RegulonDB RegulonDB 11.2: Gene Form
   

yceJ gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yceI yceJ yceO yceJp2 yceJp2 yceJp yceJp yceIp5 yceIp5

Gene      
Name: yceJ    Texpresso search in the literature
Synonym(s): ECK1042, G6554, b1057
Genome position(nucleotides): 1118480 <-- 1119046
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.15
External database links:  
ASAP:
 ABE-0003585
ECHOBASE:
 EB2526
ECOLIHUB:
 yceJ
OU-MICROARRAY:
 b1057
STRING:
 511145.b1057
COLOMBOS: yceJ


Product      
Name: putative cytochrome b561 YceJ
Synonym(s): YceJ
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 20.736
Isoelectric point: 9.209
Motif(s):
 
Type Positions Sequence Comment
9 -> 180 RYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLG
16 -> 36 AFHWLSAIIVYGMFALGLWMV UniProt: Helical.
92 -> 112 AGHLALYLLLFAIGISGYLIS UniProt: Helical.
144 -> 164 LHFWLAWSVVVLSVMHGFMAL UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.6 - biosynthesis of macromolecules (cellular constituents) --> 1.6.15 - large molecule carriers --> 1.6.15.1 - cytochromes
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
molecular_function GO:0009055 - electron transfer activity
GO:0046872 - metal ion binding
GO:0020037 - heme binding
biological_process GO:0022904 - respiratory electron transport chain
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P75925
ECOCYC:
 G6554-MONOMER
ECOLIWIKI:
 b1057
INTERPRO:
 IPR011577
INTERPRO:
 IPR016174
PFAM:
 PF01292
PRIDE:
 P75925
REFSEQ:
 NP_415575
SMR:
 P75925
UNIPROT:
 P75925


Operon      
Name: yceJI         
Operon arrangement:
Transcription unit        Promoter
yceJI
yceJI
yceI


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yceIp5 1118641 reverse nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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