RegulonDB RegulonDB 11.2: Gene Form
   

insB7 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yjhU insB7 insA7 ykiE insAp13 insAp13 insAp14 insAp14 TSS_5124 TSS_5124

Gene      
Name: insB7    Texpresso search in the literature
Synonym(s): ECK0022, G0-10569, b4563, b4564, b4576
Type: Pseudo Gene
Genome position(nucleotides): 4518721 --> 4519224
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 52.58
External database links:  
ASAP:
 ABE-0285084
ASAP:
 ABE-0285109
ECOLIHUB:
 insB-7_2
ECOLIHUB:
 insB-7_1
COLOMBOS: insB7


Operon      
Name: insB7         
Operon arrangement:
Transcription unit        Promoter
insB7


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5124 4518374 forward nd [RS-EPT-CBR] [1]
  promoter insAp14 4518379 forward nd [COMP-AINF] [2]
  promoter insAp13 4518442 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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