RegulonDB

Name:

asr -> asr_mRNA

Description:

Transcription of transcription unit asr. Reaction activation by RstA-phosphate.

Type:

transcription

Pathway Components:

asr - RstA-phosphate -> asr_mRNA

Components:

Function	Name	Type
activator	RstA-phosphate	complex
reactant	asr	gene
product	asr_mRNA	RNA

Name:

narGHJI -> narGHJI_mRNA

Description:

Transcription of transcription unit narGHJI. Reaction activation by RstA-phosphate.

Type:

transcription

Pathway Components:

narGHJI - RstA-phosphate -> narGHJI_mRNA

Components:

Function	Name	Type
activator	RstA-phosphate	complex
reactant	narGHJI	gene
product	narGHJI_mRNA	RNA

Name:

csgDEFG -> csgDEFG_mRNA

Description:

Transcription of transcription unit csgDEFG. Reaction inhibition by RstA-phosphate.

Type:

transcription

Pathway Components:

csgDEFG - RstA-phosphate -> csgDEFG_mRNA

Components:

Function	Name	Type
inhibitor	RstA-phosphate	complex
reactant	csgDEFG	gene
product	csgDEFG_mRNA	RNA

Name:

ompF -> ompF_mRNA

Description:

Transcription of transcription unit ompF. Reaction inhibition by RstA-phosphate.

Type:

transcription

Pathway Components:

ompF - RstA-phosphate -> ompF_mRNA

Components:

Function	Name	Type
inhibitor	RstA-phosphate	complex
reactant	ompF	gene
product	ompF_mRNA	RNA

Name:

ompF_mRNA -> OmpF

Description:

Translation of OmpF

Type:

translation

Pathway Components:

ompF_mRNA -> OmpF

Components:

Function	Name	Type
product	OmpF	protein
reactant	ompF_mRNA	RNA

Name:

hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da

Description:

Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.

Type:

transport

Pathway Components:

hydrophilic solute or ion 600 Da_Ext - OmpF -> hydrophilic solute or ion 600 Da

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	hydrophilic solute or ion 600 Da	simple_molecule
reactant	hydrophilic solute or ion 600 Da_Ext	simple_molecule

Name:

organophosphorus compound_Ext -> organophosphorus compound

Description:

Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.

Type:

transport

Pathway Components:

organophosphorus compound_Ext - OmpF -> organophosphorus compound

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	organophosphorus compound	simple_molecule
reactant	organophosphorus compound_Ext	simple_molecule

Name:

glycoside_Ext -> glycoside

Description:

Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.

Type:

transport

Pathway Components:

glycoside_Ext - OmpF -> glycoside

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	glycoside	simple_molecule
reactant	glycoside_Ext	simple_molecule

Name:

sugar_Ext -> sugar

Description:

Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.

Type:

transport

Pathway Components:

sugar_Ext - OmpF -> sugar

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	sugar	simple_molecule
reactant	sugar_Ext	simple_molecule

Name:

beta-Neu5Ac_Ext -> beta-Neu5Ac

Description:

Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.

Type:

transport

Pathway Components:

beta-Neu5Ac_Ext - OmpF -> beta-Neu5Ac

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	beta-Neu5Ac	simple_molecule
reactant	beta-Neu5Ac_Ext	simple_molecule

Name:

N-acetylneuraminate_Ext -> N-acetylneuraminate

Description:

Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.

Type:

transport

Pathway Components:

N-acetylneuraminate_Ext - OmpF -> N-acetylneuraminate

Components:

Function	Name	Type
product	N-acetylneuraminate	simple_molecule
reactant	N-acetylneuraminate_Ext	simple_molecule
catalyzer	OmpF	protein

Name:

sugar phosphate_Ext -> sugar phosphate

Description:

Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.

Type:

transport

Pathway Components:

sugar phosphate_Ext - OmpF -> sugar phosphate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	sugar phosphate	simple_molecule
reactant	sugar phosphate_Ext	simple_molecule

Name:

aromatic compound_Ext -> aromatic compound

Description:

Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.

Type:

transport

Pathway Components:

aromatic compound_Ext - OmpF -> aromatic compound

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	aromatic compound	simple_molecule
reactant	aromatic compound_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - OmpF -> enterobactin

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

trisaccharide_Ext -> trisaccharide

Description:

Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.

Type:

transport

Pathway Components:

trisaccharide_Ext - OmpF -> trisaccharide

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	trisaccharide	simple_molecule
reactant	trisaccharide_Ext	simple_molecule

Name:

disaccharide_Ext -> disaccharide

Description:

Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.

Type:

transport

Pathway Components:

disaccharide_Ext - OmpF -> disaccharide

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	disaccharide	simple_molecule
reactant	disaccharide_Ext	simple_molecule

Name:

maltose_Ext -> maltose

Description:

Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.

Type:

transport

Pathway Components:

maltose_Ext - OmpF -> maltose

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	maltose	simple_molecule
reactant	maltose_Ext	simple_molecule

Name:

chitobiose_Ext -> chitobiose

Description:

Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.

Type:

transport

Pathway Components:

chitobiose_Ext - OmpF -> chitobiose

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	chitobiose	simple_molecule
reactant	chitobiose_Ext	simple_molecule

Name:

oligopeptide_Ext -> oligopeptide

Description:

Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.

Type:

transport

Pathway Components:

oligopeptide_Ext - OmpF -> oligopeptide

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	oligopeptide	simple_molecule
reactant	oligopeptide_Ext	simple_molecule

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - OmpF -> nucleoside

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

nucleotide_Ext -> nucleotide

Description:

Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.

Type:

transport

Pathway Components:

nucleotide_Ext - OmpF -> nucleotide

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	nucleotide	simple_molecule
reactant	nucleotide_Ext	simple_molecule

Name:

nucleotide sugar_Ext -> nucleotide sugar

Description:

Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.

Type:

transport

Pathway Components:

nucleotide sugar_Ext - OmpF -> nucleotide sugar

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	nucleotide sugar	simple_molecule
reactant	nucleotide sugar_Ext	simple_molecule

Name:

RCHO_Ext -> RCHO

Description:

Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.

Type:

transport

Pathway Components:

RCHO_Ext - OmpF -> RCHO

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	RCHO	simple_molecule
reactant	RCHO_Ext	simple_molecule

Name:

lactone_Ext -> lactone

Description:

Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.

Type:

transport

Pathway Components:

lactone_Ext - OmpF -> lactone

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	lactone	simple_molecule
reactant	lactone_Ext	simple_molecule

Name:

amide_Ext -> amide

Description:

Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.

Type:

transport

Pathway Components:

amide_Ext - OmpF -> amide

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	amide	simple_molecule
reactant	amide_Ext	simple_molecule

Name:

amine_Ext -> amine

Description:

Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.

Type:

transport

Pathway Components:

amine_Ext - OmpF -> amine

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	amine	simple_molecule
reactant	amine_Ext	simple_molecule

Name:

hydroxy carboxylate_Ext -> hydroxy carboxylate

Description:

Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.

Type:

transport

Pathway Components:

hydroxy carboxylate_Ext - OmpF -> hydroxy carboxylate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	hydroxy carboxylate	simple_molecule
reactant	hydroxy carboxylate_Ext	simple_molecule

Name:

aldonate_Ext -> aldonate

Description:

Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.

Type:

transport

Pathway Components:

aldonate_Ext - OmpF -> aldonate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	aldonate	simple_molecule
reactant	aldonate_Ext	simple_molecule

Name:

MCFA_Ext -> MCFA

Description:

Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.

Type:

transport

Pathway Components:

MCFA_Ext - OmpF -> MCFA

Components:

Function	Name	Type
product	MCFA	simple_molecule
reactant	MCFA_Ext	simple_molecule
catalyzer	OmpF	protein

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - OmpF -> caprate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

monocarboxylate_Ext -> monocarboxylate

Description:

Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.

Type:

transport

Pathway Components:

monocarboxylate_Ext - OmpF -> monocarboxylate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	monocarboxylate	simple_molecule
reactant	monocarboxylate_Ext	simple_molecule

Name:

betaine_Ext -> betaine

Description:

Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.

Type:

transport

Pathway Components:

betaine_Ext - OmpF -> betaine

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	betaine	simple_molecule
reactant	betaine_Ext	simple_molecule

Name:

dicarboxylate_Ext -> dicarboxylate

Description:

Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.

Type:

transport

Pathway Components:

dicarboxylate_Ext - OmpF -> dicarboxylate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	dicarboxylate	simple_molecule
reactant	dicarboxylate_Ext	simple_molecule

Name:

5-methylthioribose_Ext -> 5-methylthioribose

Description:

Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.

Type:

transport

Pathway Components:

5-methylthioribose_Ext - OmpF -> 5-methylthioribose

Components:

Function	Name	Type
product	5-methylthioribose	simple_molecule
reactant	5-methylthioribose_Ext	simple_molecule
catalyzer	OmpF	protein

Name:

inositol_Ext -> inositol

Description:

Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.

Type:

transport

Pathway Components:

inositol_Ext - OmpF -> inositol

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	inositol	simple_molecule
reactant	inositol_Ext	simple_molecule

Name:

amino acid_Ext -> amino acid

Description:

Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.

Type:

transport

Pathway Components:

amino acid_Ext - OmpF -> amino acid

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	amino acid	simple_molecule
reactant	amino acid_Ext	simple_molecule

Name:

base(2)_Ext -> base(2)

Description:

Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.

Type:

transport

Pathway Components:

base(2)_Ext - OmpF -> base(2)

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	base(2)	simple_molecule
reactant	base(2)_Ext	simple_molecule

Name:

polyol_Ext -> polyol

Description:

Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.

Type:

transport

Pathway Components:

polyol_Ext - OmpF -> polyol

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	polyol	simple_molecule
reactant	polyol_Ext	simple_molecule

Name:

short-chain alcohol_Ext -> short-chain alcohol

Description:

Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.

Type:

transport

Pathway Components:

short-chain alcohol_Ext - OmpF -> short-chain alcohol

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	short-chain alcohol	simple_molecule
reactant	short-chain alcohol_Ext	simple_molecule

Name:

short-chain acid anion_Ext -> short-chain acid anion

Description:

Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.

Type:

transport

Pathway Components:

short-chain acid anion_Ext - OmpF -> short-chain acid anion

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	short-chain acid anion	simple_molecule
reactant	short-chain acid anion_Ext	simple_molecule

Name:

organosulfur compound_Ext -> organosulfur compound

Description:

Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.

Type:

transport

Pathway Components:

organosulfur compound_Ext - OmpF -> organosulfur compound

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	organosulfur compound	simple_molecule
reactant	organosulfur compound_Ext	simple_molecule

Name:

sulfadiazine_Ext -> sulfadiazine

Description:

Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.

Type:

transport

Pathway Components:

sulfadiazine_Ext - OmpF -> sulfadiazine

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	sulfadiazine	simple_molecule
reactant	sulfadiazine_Ext	simple_molecule

Name:

ion_Ext -> ion

Description:

Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.

Type:

transport

Pathway Components:

ion_Ext - OmpF -> ion

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	ion	simple_molecule
reactant	ion_Ext	simple_molecule

Name:

glycerol 1-phosphate_Ext -> glycerol 1-phosphate

Description:

Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.

Type:

transport

Pathway Components:

glycerol 1-phosphate_Ext - OmpF -> glycerol 1-phosphate

Components:

Function	Name	Type
catalyzer	OmpF	protein
product	glycerol 1-phosphate	simple_molecule
reactant	glycerol 1-phosphate_Ext	simple_molecule

Name:

OmpF + TolB -> TolB-OmpF

Description:

Reaction transforming OmpF, TolB into TolB-OmpF

Type:

state transition

Pathway Components:

OmpF + TolB -> TolB-OmpF

Components:

Function	Name	Type
reactant	OmpF	protein
reactant	TolB	protein
product	TolB-OmpF	complex

Name:

asr_mRNA -> Asr

Description:

Translation of Asr

Type:

translation

Pathway Components:

asr_mRNA -> Asr

Components:

Function	Name	Type
product	Asr	protein
reactant	asr_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgD

Description:

Translation of CsgD

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgD

Components:

Function	Name	Type
product	CsgD	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgE

Description:

Translation of CsgE

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgE

Components:

Function	Name	Type
product	CsgE	protein
reactant	csgDEFG_mRNA	RNA

Name:

CsgG + CsgE -> CsgE-CsgG

Description:

Reaction transforming CsgG, CsgE into CsgE-CsgG

Type:

state transition

Pathway Components:

CsgG + CsgE -> CsgE-CsgG

Components:

Function	Name	Type
reactant	CsgE	protein
product	CsgE-CsgG	complex
reactant	CsgG	protein

Name:

CsgA_Ext -> CsgA

Description:

Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.

Type:

transport

Pathway Components:

CsgA_Ext - CsgE-CsgG -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	CsgA_Ext	simple_molecule
catalyzer	CsgE-CsgG	complex

Name:

csgDEFG_mRNA -> CsgF

Description:

Translation of CsgF

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgF

Components:

Function	Name	Type
product	CsgF	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgG

Description:

Translation of CsgG

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgG

Components:

Function	Name	Type
product	CsgG	protein
reactant	csgDEFG_mRNA	RNA

Name:

narGHJI_mRNA -> NarG

Description:

Translation of NarG

Type:

translation

Pathway Components:

narGHJI_mRNA -> NarG

Components:

Function	Name	Type
product	NarG	protein
reactant	narGHJI_mRNA	RNA

Name:

NarI + NarH + NarG -> NarG-NarH-NarI

Description:

Reaction transforming NarI, NarH, NarG into NarG-NarH-NarI

Type:

state transition

Pathway Components:

NarI + NarH + NarG -> NarG-NarH-NarI

Components:

Function	Name	Type
reactant	NarG	protein
product	NarG-NarH-NarI	complex
reactant	NarH	protein
reactant	NarI	protein

Name:

menaquinol_Ext + nitrate_Ext -> vitamin K2 + nitrite

Description:

Transport of menaquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of vitamin K2, nitrite inside the cell.

Type:

transport

Pathway Components:

menaquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> vitamin K2 + nitrite

Components:

Function	Name	Type
catalyzer	NarG-NarH-NarI	complex
reactant	menaquinol_Ext	simple_molecule
reactant	nitrate_Ext	simple_molecule
product	nitrite	simple_molecule
product	vitamin K2	simple_molecule

Name:

ubiquinol_Ext + nitrate_Ext -> ubiquinone + nitrite

Description:

Transport of ubiquinol_Ext, nitrate_Ext through a bacterial membrane, leading to the presence of ubiquinone, nitrite inside the cell.

Type:

transport

Pathway Components:

ubiquinol_Ext + nitrate_Ext - NarG-NarH-NarI -> ubiquinone + nitrite

Components:

Function	Name	Type
catalyzer	NarG-NarH-NarI	complex
reactant	nitrate_Ext	simple_molecule
product	nitrite	simple_molecule
reactant	ubiquinol_Ext	simple_molecule
product	ubiquinone	simple_molecule

Name:

A(H2) + TeO2 -> acceptors + Te0

Description:

Reaction transforming A(H2), TeO2 into acceptors, Te0

Type:

state transition

Pathway Components:

A(H2) + TeO2 - NarG-NarH-NarI -> acceptors + Te0

Components:

Function	Name	Type
reactant	A(H2)	simple_molecule
catalyzer	NarG-NarH-NarI	complex
product	Te0	simple_molecule
reactant	TeO2	simple_molecule
product	acceptors	simple_molecule

Name:

narGHJI_mRNA -> NarH

Description:

Translation of NarH

Type:

translation

Pathway Components:

narGHJI_mRNA -> NarH

Components:

Function	Name	Type
product	NarH	protein
reactant	narGHJI_mRNA	RNA

Name:

narGHJI_mRNA -> NarJ

Description:

Translation of NarJ

Type:

translation

Pathway Components:

narGHJI_mRNA -> NarJ

Components:

Function	Name	Type
product	NarJ	protein
reactant	narGHJI_mRNA	RNA

Name:

narGHJI_mRNA -> NarI

Description:

Translation of NarI

Type:

translation

Pathway Components:

narGHJI_mRNA -> NarI

Components:

Function	Name	Type
product	NarI	protein
reactant	narGHJI_mRNA	RNA

Gensor Unit Map