RegulonDB

Name:

acrD -> acrD_mRNA

Description:

Transcription of transcription unit acrD. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

acrD - CpxR-phosphate -> acrD_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	acrD	gene
product	acrD_mRNA	RNA

Name:

aroG -> aroG_mRNA

Description:

Transcription of transcription unit aroG. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

aroG - CpxR-phosphate -> aroG_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	aroG	gene
product	aroG_mRNA	RNA

Name:

bacA -> bacA_mRNA

Description:

Transcription of transcription unit bacA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

bacA - CpxR-phosphate -> bacA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	bacA	gene
product	bacA_mRNA	RNA

Name:

cpxPQ -> cpxPQ_mRNA

Description:

Transcription of transcription unit cpxPQ. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

cpxPQ - CpxR-phosphate -> cpxPQ_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	cpxPQ	gene
product	cpxPQ_mRNA	RNA

Name:

cpxRA -> cpxRA_mRNA

Description:

Transcription of transcription unit cpxRA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

cpxRA - CpxR-phosphate -> cpxRA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	cpxRA	gene
product	cpxRA_mRNA	RNA

Name:

degP -> degP_mRNA

Description:

Transcription of transcription unit degP. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

degP - CpxR-phosphate -> degP_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	degP	gene
product	degP_mRNA	RNA

Name:

dgcZ -> dgcZ_mRNA

Description:

Transcription of transcription unit dgcZ. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

dgcZ - CpxR-phosphate -> dgcZ_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	dgcZ	gene
product	dgcZ_mRNA	RNA

Name:

dsbC -> dsbC_mRNA

Description:

Transcription of transcription unit dsbC. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

dsbC - CpxR-phosphate -> dsbC_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	dsbC	gene
product	dsbC_mRNA	RNA

Name:

ftnB -> ftnB_mRNA

Description:

Transcription of transcription unit ftnB. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

ftnB - CpxR-phosphate -> ftnB_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	ftnB	gene
product	ftnB_mRNA	RNA

Name:

ldtC -> ldtC_mRNA

Description:

Transcription of transcription unit ldtC. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

ldtC - CpxR-phosphate -> ldtC_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	ldtC	gene
product	ldtC_mRNA	RNA

Name:

ldtD -> ldtD_mRNA

Description:

Transcription of transcription unit ldtD. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

ldtD - CpxR-phosphate -> ldtD_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	ldtD	gene
product	ldtD_mRNA	RNA

Name:

marRAB -> marRAB_mRNA

Description:

Transcription of transcription unit marRAB. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

marRAB - CpxR-phosphate -> marRAB_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	marRAB	gene
product	marRAB_mRNA	RNA

Name:

mdtABCD-baeSR -> mdtABCD-baeSR_mRNA

Description:

Transcription of transcription unit mdtABCD-baeSR. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

mdtABCD-baeSR - CpxR-phosphate -> mdtABCD-baeSR_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	mdtABCD-baeSR	gene
product	mdtABCD-baeSR_mRNA	RNA

Name:

ompC -> ompC_mRNA

Description:

Transcription of transcription unit ompC. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

ompC - CpxR-phosphate -> ompC_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	ompC	gene
product	ompC_mRNA	RNA

Name:

ppiA -> ppiA_mRNA

Description:

Transcription of transcription unit ppiA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

ppiA - CpxR-phosphate -> ppiA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	ppiA	gene
product	ppiA_mRNA	RNA

Name:

ppiD -> ppiD_mRNA

Description:

Transcription of transcription unit ppiD. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

ppiD - CpxR-phosphate -> ppiD_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	ppiD	gene
product	ppiD_mRNA	RNA

Name:

rpoH -> rpoH_mRNA

Description:

Transcription of transcription unit rpoH. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

rpoH - CpxR-phosphate -> rpoH_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	rpoH	gene
product	rpoH_mRNA	RNA

Name:

rprA -> rprA_mRNA

Description:

Transcription of transcription unit rprA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

rprA - CpxR-phosphate -> rprA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	rprA	gene
product	rprA_mRNA	RNA

Name:

sbmA-yaiW -> sbmA-yaiW_mRNA

Description:

Transcription of transcription unit sbmA-yaiW. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

sbmA-yaiW - CpxR-phosphate -> sbmA-yaiW_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	sbmA-yaiW	gene
product	sbmA-yaiW_mRNA	RNA

Name:

skp-lpxD-fabZ-lpxA -> skp-lpxD-fabZ-lpxA_mRNA

Description:

Transcription of transcription unit skp-lpxD-fabZ-lpxA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

skp-lpxD-fabZ-lpxA - CpxR-phosphate -> skp-lpxD-fabZ-lpxA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	skp-lpxD-fabZ-lpxA	gene
product	skp-lpxD-fabZ-lpxA_mRNA	RNA

Name:

slt -> slt_mRNA

Description:

Transcription of transcription unit slt. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

slt - CpxR-phosphate -> slt_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	slt	gene
product	slt_mRNA	RNA

Name:

spy -> spy_mRNA

Description:

Transcription of transcription unit spy. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

spy - CpxR-phosphate -> spy_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	spy	gene
product	spy_mRNA	RNA

Name:

srkA-dsbA -> srkA-dsbA_mRNA

Description:

Transcription of transcription unit srkA-dsbA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

srkA-dsbA - CpxR-phosphate -> srkA-dsbA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	srkA-dsbA	gene
product	srkA-dsbA_mRNA	RNA

Name:

tomB-hha -> tomB-hha_mRNA

Description:

Transcription of transcription unit tomB-hha. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

tomB-hha - CpxR-phosphate -> tomB-hha_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	tomB-hha	gene
product	tomB-hha_mRNA	RNA

Name:

yccA -> yccA_mRNA

Description:

Transcription of transcription unit yccA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

yccA - CpxR-phosphate -> yccA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	yccA	gene
product	yccA_mRNA	RNA

Name:

yebE -> yebE_mRNA

Description:

Transcription of transcription unit yebE. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

yebE - CpxR-phosphate -> yebE_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	yebE	gene
product	yebE_mRNA	RNA

Name:

yidQ -> yidQ_mRNA

Description:

Transcription of transcription unit yidQ. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

yidQ - CpxR-phosphate -> yidQ_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	yidQ	gene
product	yidQ_mRNA	RNA

Name:

yqaE -> yqaE_mRNA

Description:

Transcription of transcription unit yqaE. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

yqaE - CpxR-phosphate -> yqaE_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	yqaE	gene
product	yqaE_mRNA	RNA

Name:

yqaE-kbp -> yqaE-kbp_mRNA

Description:

Transcription of transcription unit yqaE-kbp. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

yqaE-kbp - CpxR-phosphate -> yqaE-kbp_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	yqaE-kbp	gene
product	yqaE-kbp_mRNA	RNA

Name:

yqjA-mzrA -> yqjA-mzrA_mRNA

Description:

Transcription of transcription unit yqjA-mzrA. Reaction activation by CpxR-phosphate.

Type:

transcription

Pathway Components:

yqjA-mzrA - CpxR-phosphate -> yqjA-mzrA_mRNA

Components:

Function	Name	Type
activator	CpxR-phosphate	complex
reactant	yqjA-mzrA	gene
product	yqjA-mzrA_mRNA	RNA

Name:

bamE -> bamE_mRNA

Description:

Transcription of transcription unit bamE. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

bamE - CpxR-phosphate -> bamE_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	bamE	gene
product	bamE_mRNA	RNA

Name:

csgBAC -> csgBAC_mRNA

Description:

Transcription of transcription unit csgBAC. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

csgBAC - CpxR-phosphate -> csgBAC_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	csgBAC	gene
product	csgBAC_mRNA	RNA

Name:

csgDEFG -> csgDEFG_mRNA

Description:

Transcription of transcription unit csgDEFG. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

csgDEFG - CpxR-phosphate -> csgDEFG_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	csgDEFG	gene
product	csgDEFG_mRNA	RNA

Name:

cyaR -> cyaR_mRNA

Description:

Transcription of transcription unit cyaR. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

cyaR - CpxR-phosphate -> cyaR_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	cyaR	gene
product	cyaR_mRNA	RNA

Name:

efeU_1U_2 -> efeU_1U_2_mRNA

Description:

Transcription of transcription unit efeU_1U_2. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

efeU_1U_2 - CpxR-phosphate -> efeU_1U_2_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	efeU_1U_2	gene
product	efeU_1U_2_mRNA	RNA

Name:

motAB-cheAW -> motAB-cheAW_mRNA

Description:

Transcription of transcription unit motAB-cheAW. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

motAB-cheAW - CpxR-phosphate -> motAB-cheAW_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	motAB-cheAW	gene
product	motAB-cheAW_mRNA	RNA

Name:

ompF -> ompF_mRNA

Description:

Transcription of transcription unit ompF. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

ompF - CpxR-phosphate -> ompF_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	ompF	gene
product	ompF_mRNA	RNA

Name:

psd-mscM -> psd-mscM_mRNA

Description:

Transcription of transcription unit psd-mscM. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

psd-mscM - CpxR-phosphate -> psd-mscM_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	psd-mscM	gene
product	psd-mscM_mRNA	RNA

Name:

rseD-rpoE-rseABC -> rseD-rpoE-rseABC_mRNA

Description:

Transcription of transcription unit rseD-rpoE-rseABC. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

rseD-rpoE-rseABC - CpxR-phosphate -> rseD-rpoE-rseABC_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	rseD-rpoE-rseABC	gene
product	rseD-rpoE-rseABC_mRNA	RNA

Name:

tsr -> tsr_mRNA

Description:

Transcription of transcription unit tsr. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

tsr - CpxR-phosphate -> tsr_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	tsr	gene
product	tsr_mRNA	RNA

Name:

ung -> ung_mRNA

Description:

Transcription of transcription unit ung. Reaction inhibition by CpxR-phosphate.

Type:

transcription

Pathway Components:

ung - CpxR-phosphate -> ung_mRNA

Components:

Function	Name	Type
inhibitor	CpxR-phosphate	complex
reactant	ung	gene
product	ung_mRNA	RNA

Name:

cpxPQ_mRNA -> CpxP

Description:

Translation of CpxP

Type:

translation

Pathway Components:

cpxPQ_mRNA -> CpxP

Components:

Function	Name	Type
product	CpxP	protein
reactant	cpxPQ_mRNA	RNA

Name:

cpxPQ_mRNA -> RNA:CpxQ

Description:

Translation of RNA:CpxQ

Type:

translation

Pathway Components:

cpxPQ_mRNA -> RNA:CpxQ

Components:

Function	Name	Type
product	RNA:CpxQ	protein
reactant	cpxPQ_mRNA	RNA

Name:

yccA_mRNA -> YccA

Description:

Translation of YccA

Type:

translation

Pathway Components:

yccA_mRNA -> YccA

Components:

Function	Name	Type
product	YccA	protein
reactant	yccA_mRNA	RNA

Name:

ppiD_mRNA -> PpiD

Description:

Translation of PpiD

Type:

translation

Pathway Components:

ppiD_mRNA -> PpiD

Components:

Function	Name	Type
product	PpiD	protein
reactant	ppiD_mRNA	RNA

Name:

ftnB_mRNA -> FtnB

Description:

Translation of FtnB

Type:

translation

Pathway Components:

ftnB_mRNA -> FtnB

Components:

Function	Name	Type
product	FtnB	protein
reactant	ftnB_mRNA	RNA

Name:

ompF_mRNA -> OmpF

Description:

Translation of OmpF

Type:

translation

Pathway Components:

ompF_mRNA -> OmpF

Components:

Function	Name	Type
product	OmpF	protein
reactant	ompF_mRNA	RNA

Name:

hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da

Description:

Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.

Type:

transport

Pathway Components:

hydrophilic solute or ion 600 Da_Ext - OmpC - OmpF -> hydrophilic solute or ion 600 Da

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	hydrophilic solute or ion 600 Da	simple_molecule
reactant	hydrophilic solute or ion 600 Da_Ext	simple_molecule

Name:

organophosphorus compound_Ext -> organophosphorus compound

Description:

Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.

Type:

transport

Pathway Components:

organophosphorus compound_Ext - OmpC - OmpF -> organophosphorus compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	organophosphorus compound	simple_molecule
reactant	organophosphorus compound_Ext	simple_molecule

Name:

glycoside_Ext -> glycoside

Description:

Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.

Type:

transport

Pathway Components:

glycoside_Ext - OmpC - OmpF -> glycoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	glycoside	simple_molecule
reactant	glycoside_Ext	simple_molecule

Name:

sugar_Ext -> sugar

Description:

Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.

Type:

transport

Pathway Components:

sugar_Ext - OmpC - OmpF -> sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sugar	simple_molecule
reactant	sugar_Ext	simple_molecule

Name:

beta-Neu5Ac_Ext -> beta-Neu5Ac

Description:

Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.

Type:

transport

Pathway Components:

beta-Neu5Ac_Ext - OmpC - OmpF -> beta-Neu5Ac

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	beta-Neu5Ac	simple_molecule
reactant	beta-Neu5Ac_Ext	simple_molecule

Name:

N-acetylneuraminate_Ext -> N-acetylneuraminate

Description:

Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.

Type:

transport

Pathway Components:

N-acetylneuraminate_Ext - OmpC - OmpF -> N-acetylneuraminate

Components:

Function	Name	Type
product	N-acetylneuraminate	simple_molecule
reactant	N-acetylneuraminate_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

sugar phosphate_Ext -> sugar phosphate

Description:

Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.

Type:

transport

Pathway Components:

sugar phosphate_Ext - OmpC - OmpF -> sugar phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sugar phosphate	simple_molecule
reactant	sugar phosphate_Ext	simple_molecule

Name:

aromatic compound_Ext -> aromatic compound

Description:

Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.

Type:

transport

Pathway Components:

aromatic compound_Ext - OmpC - OmpF -> aromatic compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	aromatic compound	simple_molecule
reactant	aromatic compound_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - OmpC - OmpF -> enterobactin

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

trisaccharide_Ext -> trisaccharide

Description:

Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.

Type:

transport

Pathway Components:

trisaccharide_Ext - OmpC - OmpF -> trisaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	trisaccharide	simple_molecule
reactant	trisaccharide_Ext	simple_molecule

Name:

disaccharide_Ext -> disaccharide

Description:

Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.

Type:

transport

Pathway Components:

disaccharide_Ext - OmpC - OmpF -> disaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	disaccharide	simple_molecule
reactant	disaccharide_Ext	simple_molecule

Name:

maltose_Ext -> maltose

Description:

Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.

Type:

transport

Pathway Components:

maltose_Ext - OmpC - OmpF -> maltose

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	maltose	simple_molecule
reactant	maltose_Ext	simple_molecule

Name:

chitobiose_Ext -> chitobiose

Description:

Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.

Type:

transport

Pathway Components:

chitobiose_Ext - OmpC - OmpF -> chitobiose

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	chitobiose	simple_molecule
reactant	chitobiose_Ext	simple_molecule

Name:

oligopeptide_Ext -> oligopeptide

Description:

Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.

Type:

transport

Pathway Components:

oligopeptide_Ext - OmpC - OmpF -> oligopeptide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	oligopeptide	simple_molecule
reactant	oligopeptide_Ext	simple_molecule

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - OmpC - OmpF -> nucleoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

nucleotide_Ext -> nucleotide

Description:

Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.

Type:

transport

Pathway Components:

nucleotide_Ext - OmpC - OmpF -> nucleotide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleotide	simple_molecule
reactant	nucleotide_Ext	simple_molecule

Name:

nucleotide sugar_Ext -> nucleotide sugar

Description:

Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.

Type:

transport

Pathway Components:

nucleotide sugar_Ext - OmpC - OmpF -> nucleotide sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleotide sugar	simple_molecule
reactant	nucleotide sugar_Ext	simple_molecule

Name:

RCHO_Ext -> RCHO

Description:

Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.

Type:

transport

Pathway Components:

RCHO_Ext - OmpC - OmpF -> RCHO

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	RCHO	simple_molecule
reactant	RCHO_Ext	simple_molecule

Name:

lactone_Ext -> lactone

Description:

Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.

Type:

transport

Pathway Components:

lactone_Ext - OmpC - OmpF -> lactone

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	lactone	simple_molecule
reactant	lactone_Ext	simple_molecule

Name:

amide_Ext -> amide

Description:

Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.

Type:

transport

Pathway Components:

amide_Ext - OmpC - OmpF -> amide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amide	simple_molecule
reactant	amide_Ext	simple_molecule

Name:

amine_Ext -> amine

Description:

Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.

Type:

transport

Pathway Components:

amine_Ext - OmpC - OmpF -> amine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amine	simple_molecule
reactant	amine_Ext	simple_molecule

Name:

hydroxy carboxylate_Ext -> hydroxy carboxylate

Description:

Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.

Type:

transport

Pathway Components:

hydroxy carboxylate_Ext - OmpC - OmpF -> hydroxy carboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	hydroxy carboxylate	simple_molecule
reactant	hydroxy carboxylate_Ext	simple_molecule

Name:

aldonate_Ext -> aldonate

Description:

Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.

Type:

transport

Pathway Components:

aldonate_Ext - OmpC - OmpF -> aldonate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	aldonate	simple_molecule
reactant	aldonate_Ext	simple_molecule

Name:

MCFA_Ext -> MCFA

Description:

Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.

Type:

transport

Pathway Components:

MCFA_Ext - OmpC - OmpF -> MCFA

Components:

Function	Name	Type
product	MCFA	simple_molecule
reactant	MCFA_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - OmpC - OmpF -> caprate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

monocarboxylate_Ext -> monocarboxylate

Description:

Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.

Type:

transport

Pathway Components:

monocarboxylate_Ext - OmpC - OmpF -> monocarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	monocarboxylate	simple_molecule
reactant	monocarboxylate_Ext	simple_molecule

Name:

betaine_Ext -> betaine

Description:

Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.

Type:

transport

Pathway Components:

betaine_Ext - OmpC - OmpF -> betaine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	betaine	simple_molecule
reactant	betaine_Ext	simple_molecule

Name:

dicarboxylate_Ext -> dicarboxylate

Description:

Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.

Type:

transport

Pathway Components:

dicarboxylate_Ext - OmpC - OmpF -> dicarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	dicarboxylate	simple_molecule
reactant	dicarboxylate_Ext	simple_molecule

Name:

5-methylthioribose_Ext -> 5-methylthioribose

Description:

Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.

Type:

transport

Pathway Components:

5-methylthioribose_Ext - OmpC - OmpF -> 5-methylthioribose

Components:

Function	Name	Type
product	5-methylthioribose	simple_molecule
reactant	5-methylthioribose_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

inositol_Ext -> inositol

Description:

Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.

Type:

transport

Pathway Components:

inositol_Ext - OmpC - OmpF -> inositol

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	inositol	simple_molecule
reactant	inositol_Ext	simple_molecule

Name:

amino acid_Ext -> amino acid

Description:

Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.

Type:

transport

Pathway Components:

amino acid_Ext - OmpC - OmpF -> amino acid

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amino acid	simple_molecule
reactant	amino acid_Ext	simple_molecule

Name:

base(2)_Ext -> base(2)

Description:

Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.

Type:

transport

Pathway Components:

base(2)_Ext - OmpC - OmpF -> base(2)

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	base(2)	simple_molecule
reactant	base(2)_Ext	simple_molecule

Name:

polyol_Ext -> polyol

Description:

Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.

Type:

transport

Pathway Components:

polyol_Ext - OmpC - OmpF -> polyol

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	polyol	simple_molecule
reactant	polyol_Ext	simple_molecule

Name:

short-chain alcohol_Ext -> short-chain alcohol

Description:

Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.

Type:

transport

Pathway Components:

short-chain alcohol_Ext - OmpC - OmpF -> short-chain alcohol

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	short-chain alcohol	simple_molecule
reactant	short-chain alcohol_Ext	simple_molecule

Name:

short-chain acid anion_Ext -> short-chain acid anion

Description:

Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.

Type:

transport

Pathway Components:

short-chain acid anion_Ext - OmpC - OmpF -> short-chain acid anion

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	short-chain acid anion	simple_molecule
reactant	short-chain acid anion_Ext	simple_molecule

Name:

organosulfur compound_Ext -> organosulfur compound

Description:

Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.

Type:

transport

Pathway Components:

organosulfur compound_Ext - OmpC - OmpF -> organosulfur compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	organosulfur compound	simple_molecule
reactant	organosulfur compound_Ext	simple_molecule

Name:

sulfadiazine_Ext -> sulfadiazine

Description:

Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.

Type:

transport

Pathway Components:

sulfadiazine_Ext - OmpC - OmpF -> sulfadiazine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sulfadiazine	simple_molecule
reactant	sulfadiazine_Ext	simple_molecule

Name:

ion_Ext -> ion

Description:

Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.

Type:

transport

Pathway Components:

ion_Ext - OmpC - OmpF -> ion

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	ion	simple_molecule
reactant	ion_Ext	simple_molecule

Name:

glycerol 1-phosphate_Ext -> glycerol 1-phosphate

Description:

Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.

Type:

transport

Pathway Components:

glycerol 1-phosphate_Ext - OmpC - OmpF -> glycerol 1-phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	glycerol 1-phosphate	simple_molecule
reactant	glycerol 1-phosphate_Ext	simple_molecule

Name:

TolB + OmpF -> TolB-OmpF

Description:

Reaction transforming TolB, OmpF into TolB-OmpF

Type:

state transition

Pathway Components:

TolB + OmpF -> TolB-OmpF

Components:

Function	Name	Type
reactant	OmpF	protein
reactant	TolB	protein
product	TolB-OmpF	complex

Name:

psd-mscM_mRNA -> Psd

Description:

Translation of Psd

Type:

translation

Pathway Components:

psd-mscM_mRNA -> Psd

Components:

Function	Name	Type
product	Psd	protein
reactant	psd-mscM_mRNA	RNA

Name:

Psd -> Psd-Psd

Description:

Reaction transforming Psd into Psd-Psd

Type:

state transition

Pathway Components:

Psd -> Psd-Psd

Components:

Function	Name	Type
reactant	Psd	protein
product	Psd-Psd	complex

Name:

psd-mscM_mRNA -> MscM

Description:

Translation of MscM

Type:

translation

Pathway Components:

psd-mscM_mRNA -> MscM

Components:

Function	Name	Type
product	MscM	protein
reactant	psd-mscM_mRNA	RNA

Name:

bamE_mRNA -> BamE

Description:

Translation of BamE

Type:

translation

Pathway Components:

bamE_mRNA -> BamE

Components:

Function	Name	Type
product	BamE	protein
reactant	bamE_mRNA	RNA

Name:

BamB + BamA + BamC + BamE + BamD -> BamE-BamC-BamD-BamA-BamB

Description:

Reaction transforming BamB, BamA, BamC, BamE, BamD into BamE-BamC-BamD-BamA-BamB

Type:

state transition

Pathway Components:

BamB + BamA + BamC + BamE + BamD -> BamE-BamC-BamD-BamA-BamB

Components:

Function	Name	Type
reactant	BamA	protein
reactant	BamB	protein
reactant	BamC	protein
reactant	BamD	protein
reactant	BamE	protein
product	BamE-BamC-BamD-BamA-BamB	complex

Name:

yqaE-kbp_mRNA -> YqaE

Description:

Translation of YqaE

Type:

translation

Pathway Components:

yqaE-kbp_mRNA -> YqaE

Components:

Function	Name	Type
product	YqaE	protein
reactant	yqaE-kbp_mRNA	RNA

Name:

yqaE-kbp_mRNA -> Kbp

Description:

Translation of Kbp

Type:

translation

Pathway Components:

yqaE-kbp_mRNA -> Kbp

Components:

Function	Name	Type
product	Kbp	protein
reactant	yqaE-kbp_mRNA	RNA

Name:

slt_mRNA -> Slt

Description:

Translation of Slt

Type:

translation

Pathway Components:

slt_mRNA -> Slt

Components:

Function	Name	Type
product	Slt	protein
reactant	slt_mRNA	RNA

Name:

mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide -> mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

Description:

Reaction transforming mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide into mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide, GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

Type:

state transition

Pathway Components:

mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide - Slt -> mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

Components:

Function	Name	Type
product	GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala	simple_molecule
catalyzer	Slt	protein
product	mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide	simple_molecule
reactant	mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide	simple_molecule

Name:

a mature peptidoglycan (meso-diaminopimelate containing) -> a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus + a mature peptidoglycan strand with GlcNAc terminus

Description:

Reaction transforming a mature peptidoglycan (meso-diaminopimelate containing) into a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus, a mature peptidoglycan strand with GlcNAc terminus

Type:

state transition

Pathway Components:

a mature peptidoglycan (meso-diaminopimelate containing) - Slt -> a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus + a mature peptidoglycan strand with GlcNAc terminus

Components:

Function	Name	Type
catalyzer	Slt	protein
reactant	a mature peptidoglycan (meso-diaminopimelate containing)	simple_molecule
product	a mature peptidoglycan strand with 1,6-anhydro-MurNAc terminus	simple_molecule
product	a mature peptidoglycan strand with GlcNAc terminus	simple_molecule

Name:

peptidoglycan dimer (generic) -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II

Description:

Reaction transforming peptidoglycan dimer (generic) into GlcNAc-1,6-anhydro-MurNAc-pentapeptide, lipid II

Type:

state transition

Pathway Components:

peptidoglycan dimer (generic) - Slt -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II

Components:

Function	Name	Type
product	GlcNAc-1,6-anhydro-MurNAc-pentapeptide	simple_molecule
catalyzer	Slt	protein
product	lipid II	simple_molecule
reactant	peptidoglycan dimer (generic)	simple_molecule

Name:

ppiA_mRNA -> PpiA

Description:

Translation of PpiA

Type:

translation

Pathway Components:

ppiA_mRNA -> PpiA

Components:

Function	Name	Type
product	PpiA	protein
reactant	ppiA_mRNA	RNA

Name:

peptidylproline (ω = 180) -> peptidylproline (ω = 0)

Description:

Reaction transforming peptidylproline (ω = 180) into peptidylproline (ω = 0)

Type:

state transition

Pathway Components:

peptidylproline (ω = 180) - PpiA -> peptidylproline (ω = 0)

Components:

Function	Name	Type
catalyzer	PpiA	protein
product	peptidylproline (ω = 0)	simple_molecule
reactant	peptidylproline (ω = 180)	simple_molecule

Name:

tomB-hha_mRNA -> TomB

Description:

Translation of TomB

Type:

translation

Pathway Components:

tomB-hha_mRNA -> TomB

Components:

Function	Name	Type
product	TomB	protein
reactant	tomB-hha_mRNA	RNA

Name:

tomB-hha_mRNA -> Hha

Description:

Translation of Hha

Type:

translation

Pathway Components:

tomB-hha_mRNA -> Hha

Components:

Function	Name	Type
product	Hha	protein
reactant	tomB-hha_mRNA	RNA

Name:

bacA_mRNA -> BacA

Description:

Translation of BacA

Type:

translation

Pathway Components:

bacA_mRNA -> BacA

Components:

Function	Name	Type
product	BacA	protein
reactant	bacA_mRNA	RNA

Name:

UPP (ambiguous) -> ditrans,polycis-undecaprenyl phosphate + phosphate

Description:

Reaction transforming UPP (ambiguous) into ditrans,polycis-undecaprenyl phosphate, phosphate

Type:

state transition

Pathway Components:

UPP (ambiguous) - BacA -> ditrans,polycis-undecaprenyl phosphate + phosphate

Components:

Function	Name	Type
catalyzer	BacA	protein
reactant	UPP (ambiguous)	simple_molecule
product	ditrans,polycis-undecaprenyl phosphate	simple_molecule
product	phosphate	simple_molecule

Name:

farnesyl-PP -> (E,E)-farnesyl phosphate + phosphate

Description:

Reaction transforming farnesyl-PP into (E,E)-farnesyl phosphate, phosphate

Type:

state transition

Pathway Components:

farnesyl-PP - BacA -> (E,E)-farnesyl phosphate + phosphate

Components:

Function	Name	Type
product	(E,E)-farnesyl phosphate	simple_molecule
catalyzer	BacA	protein
reactant	farnesyl-PP	simple_molecule
product	phosphate	simple_molecule

Name:

yqjA-mzrA_mRNA -> YqjA

Description:

Translation of YqjA

Type:

translation

Pathway Components:

yqjA-mzrA_mRNA -> YqjA

Components:

Function	Name	Type
product	YqjA	protein
reactant	yqjA-mzrA_mRNA	RNA

Name:

yqjA-mzrA_mRNA -> MzrA

Description:

Translation of MzrA

Type:

translation

Pathway Components:

yqjA-mzrA_mRNA -> MzrA

Components:

Function	Name	Type
product	MzrA	protein
reactant	yqjA-mzrA_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgD

Description:

Translation of CsgD

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgD

Components:

Function	Name	Type
product	CsgD	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgE

Description:

Translation of CsgE

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgE

Components:

Function	Name	Type
product	CsgE	protein
reactant	csgDEFG_mRNA	RNA

Name:

CsgG + CsgE -> CsgE-CsgG

Description:

Reaction transforming CsgG, CsgE into CsgE-CsgG

Type:

state transition

Pathway Components:

CsgG + CsgE -> CsgE-CsgG

Components:

Function	Name	Type
reactant	CsgE	protein
product	CsgE-CsgG	complex
reactant	CsgG	protein

Name:

CsgA_Ext -> CsgA

Description:

Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.

Type:

transport

Pathway Components:

CsgA_Ext - CsgE-CsgG -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	CsgA_Ext	simple_molecule
catalyzer	CsgE-CsgG	complex

Name:

csgDEFG_mRNA -> CsgF

Description:

Translation of CsgF

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgF

Components:

Function	Name	Type
product	CsgF	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgG

Description:

Translation of CsgG

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgG

Components:

Function	Name	Type
product	CsgG	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgBAC_mRNA -> CsgB

Description:

Translation of CsgB

Type:

translation

Pathway Components:

csgBAC_mRNA -> CsgB

Components:

Function	Name	Type
product	CsgB	protein
reactant	csgBAC_mRNA	RNA

Name:

csgBAC_mRNA -> CsgA

Description:

Translation of CsgA

Type:

translation

Pathway Components:

csgBAC_mRNA -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	csgBAC_mRNA	RNA

Name:

csgBAC_mRNA -> CsgC

Description:

Translation of CsgC

Type:

translation

Pathway Components:

csgBAC_mRNA -> CsgC

Components:

Function	Name	Type
product	CsgC	protein
reactant	csgBAC_mRNA	RNA

Name:

srkA-dsbA_mRNA -> SrkA

Description:

Translation of SrkA

Type:

translation

Pathway Components:

srkA-dsbA_mRNA -> SrkA

Components:

Function	Name	Type
product	SrkA	protein
reactant	srkA-dsbA_mRNA	RNA

Name:

[protein]-L-serine/L-threonine -> [protein] (L-serine/L-threonine) phosphate

Description:

Reaction transforming [protein]-L-serine/L-threonine into [protein] (L-serine/L-threonine) phosphate

Type:

state transition

Pathway Components:

[protein]-L-serine / L-threonine - SrkA -> [protein] (L-serine / L-threonine) phosphate

Components:

Function	Name	Type
catalyzer	SrkA	protein
product	[protein] (L-serine/L-threonine) phosphate	simple_molecule
reactant	[protein]-L-serine/L-threonine	simple_molecule

Name:

srkA-dsbA_mRNA -> Dsf

Description:

Translation of Dsf

Type:

translation

Pathway Components:

srkA-dsbA_mRNA -> Dsf

Components:

Function	Name	Type
product	Dsf	protein
reactant	srkA-dsbA_mRNA	RNA

Name:

protein with reduced SH groups -> protein with oxidized disulfide bonds

Description:

Reaction transforming protein with reduced SH groups into protein with oxidized disulfide bonds

Type:

state transition

Pathway Components:

protein with reduced SH groups - DsbC - Dsf -> protein with oxidized disulfide bonds

Components:

Function	Name	Type
catalyzer	DsbC	protein
catalyzer	Dsf	protein
product	protein with oxidized disulfide bonds	simple_molecule
reactant	protein with reduced SH groups	simple_molecule

Name:

srkA-dsbA_mRNA -> PpfA

Description:

Translation of PpfA

Type:

translation

Pathway Components:

srkA-dsbA_mRNA -> PpfA

Components:

Function	Name	Type
product	PpfA	protein
reactant	srkA-dsbA_mRNA	RNA

Name:

tsr_mRNA -> Tsr

Description:

Translation of Tsr

Type:

translation

Pathway Components:

tsr_mRNA -> Tsr

Components:

Function	Name	Type
product	Tsr	protein
reactant	tsr_mRNA	RNA

Name:

CheW + CheA + Tsr -> CheW-CheA-Tsr

Description:

Reaction transforming CheW, CheA, Tsr into CheW-CheA-Tsr

Type:

state transition

Pathway Components:

CheW + CheA + Tsr -> CheW-CheA-Tsr

Components:

Function	Name	Type
reactant	CheA	protein
reactant	CheW	protein
product	CheW-CheA-Tsr	complex
reactant	Tsr	protein

Name:

aroG_mRNA -> AroG

Description:

Translation of AroG

Type:

translation

Pathway Components:

aroG_mRNA -> AroG

Components:

Function	Name	Type
product	AroG	protein
reactant	aroG_mRNA	RNA

Name:

P-enol-pyruvate + erythrose-4P -> phosphate + DAHP

Description:

Reaction transforming P-enol-pyruvate, erythrose-4P into phosphate, DAHP

Type:

state transition

Pathway Components:

P-enol-pyruvate + erythrose-4P - AroG - DAHP -> phosphate + DAHP

Components:

Function	Name	Type
catalyzer	AroG	protein
inhibitor	DAHP	simple_molecule
product	DAHP	simple_molecule
reactant	P-enol-pyruvate	simple_molecule
reactant	erythrose-4P	simple_molecule
product	phosphate	simple_molecule

Name:

sbmA-yaiW_mRNA -> SbmA

Description:

Translation of SbmA

Type:

translation

Pathway Components:

sbmA-yaiW_mRNA -> SbmA

Components:

Function	Name	Type
product	SbmA	protein
reactant	sbmA-yaiW_mRNA	RNA

Name:

Peptide Antibiotic_Ext -> Peptide Antibiotic

Description:

Transport of Peptide Antibiotic_Ext through a bacterial membrane, leading to the presence of Peptide Antibiotic inside the cell.

Type:

transport

Pathway Components:

Peptide Antibiotic_Ext - SbmA -> Peptide Antibiotic

Components:

Function	Name	Type
product	Peptide Antibiotic	simple_molecule
reactant	Peptide Antibiotic_Ext	simple_molecule
catalyzer	SbmA	protein

Name:

sbmA-yaiW_mRNA -> YaiW

Description:

Translation of YaiW

Type:

translation

Pathway Components:

sbmA-yaiW_mRNA -> YaiW

Components:

Function	Name	Type
product	YaiW	protein
reactant	sbmA-yaiW_mRNA	RNA

Name:

degP_mRNA -> DegP

Description:

Translation of DegP

Type:

translation

Pathway Components:

degP_mRNA -> DegP

Components:

Function	Name	Type
product	DegP	protein
reactant	degP_mRNA	RNA

Name:

protein -> peptide

Description:

Reaction transforming protein into peptide

Type:

state transition

Pathway Components:

protein - DegP -> peptide

Components:

Function	Name	Type
catalyzer	DegP	protein
product	peptide	simple_molecule
reactant	protein	simple_molecule

Name:

rseD-rpoE-rseABC_mRNA -> RseD

Description:

Translation of RseD

Type:

translation

Pathway Components:

rseD-rpoE-rseABC_mRNA -> RseD

Components:

Function	Name	Type
product	RseD	protein
reactant	rseD-rpoE-rseABC_mRNA	RNA

Name:

rseD-rpoE-rseABC_mRNA -> RpoE

Description:

Translation of RpoE

Type:

translation

Pathway Components:

rseD-rpoE-rseABC_mRNA -> RpoE

Components:

Function	Name	Type
product	RpoE	protein
reactant	rseD-rpoE-rseABC_mRNA	RNA

Name:

RpoC + RpoE + RpoB + RpoA -> RpoB-RpoC-RpoA-RpoE

Description:

Reaction transforming RpoC, RpoE, RpoB, RpoA into RpoB-RpoC-RpoA-RpoE

Type:

state transition

Pathway Components:

RpoC + RpoE + RpoB + RpoA -> RpoB-RpoC-RpoA-RpoE

Components:

Function	Name	Type
reactant	RpoA	protein
reactant	RpoB	protein
product	RpoB-RpoC-RpoA-RpoE	complex
reactant	RpoC	protein
reactant	RpoE	protein

Name:

rseD-rpoE-rseABC_mRNA -> RseA

Description:

Translation of RseA

Type:

translation

Pathway Components:

rseD-rpoE-rseABC_mRNA -> RseA

Components:

Function	Name	Type
product	RseA	protein
reactant	rseD-rpoE-rseABC_mRNA	RNA

Name:

rseD-rpoE-rseABC_mRNA -> RseB

Description:

Translation of RseB

Type:

translation

Pathway Components:

rseD-rpoE-rseABC_mRNA -> RseB

Components:

Function	Name	Type
product	RseB	protein
reactant	rseD-rpoE-rseABC_mRNA	RNA

Name:

rseD-rpoE-rseABC_mRNA -> RseC

Description:

Translation of RseC

Type:

translation

Pathway Components:

rseD-rpoE-rseABC_mRNA -> RseC

Components:

Function	Name	Type
product	RseC	protein
reactant	rseD-rpoE-rseABC_mRNA	RNA

Name:

motAB-cheAW_mRNA -> MotA

Description:

Translation of MotA

Type:

translation

Pathway Components:

motAB-cheAW_mRNA -> MotA

Components:

Function	Name	Type
product	MotA	protein
reactant	motAB-cheAW_mRNA	RNA

Name:

FliN + MotA + FlgF + FlgH + FlgG + FlgC + FlgB + MotB + FliF + FliL + FliE + FlgI + FliG + FliM -> FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL

Description:

Reaction transforming FliN, MotA, FlgF, FlgH, FlgG, FlgC, FlgB, MotB, FliF, FliL, FliE, FlgI, FliG, FliM into FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL

Type:

state transition

Pathway Components:

FliN + MotA + FlgF + FlgH + FlgG + FlgC + FlgB + MotB + FliF + FliL + FliE + FlgI + FliG + FliM -> FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL

Components:

Show/Hide Components Table

Function	Name	Type
reactant	FlgB	protein
reactant	FlgC	protein
reactant	FlgF	protein
reactant	FlgG	protein
reactant	FlgH	protein
reactant	FlgI	protein
reactant	FliE	protein
reactant	FliF	protein
reactant	FliG	protein
reactant	FliL	protein
reactant	FliM	protein
reactant	FliN	protein
product	FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL	complex
reactant	MotA	protein
reactant	MotB	protein

Name:

motAB-cheAW_mRNA -> MotB

Description:

Translation of MotB

Type:

translation

Pathway Components:

motAB-cheAW_mRNA -> MotB

Components:

Function	Name	Type
product	MotB	protein
reactant	motAB-cheAW_mRNA	RNA

Name:

motAB-cheAW_mRNA -> CheA

Description:

Translation of CheA

Type:

translation

Pathway Components:

motAB-cheAW_mRNA -> CheA

Components:

Function	Name	Type
product	CheA	protein
reactant	motAB-cheAW_mRNA	RNA

Name:

CheW + CheA + Trg -> CheA-CheW-Trg

Description:

Reaction transforming CheW, CheA, Trg into CheA-CheW-Trg

Type:

state transition

Pathway Components:

CheW + CheA + Trg -> CheA-CheW-Trg

Components:

Function	Name	Type
reactant	CheA	protein
product	CheA-CheW-Trg	complex
reactant	CheW	protein
reactant	Trg	protein

Name:

CheA + CheW + Tap -> CheA-CheW-Tap

Description:

Reaction transforming CheA, CheW, Tap into CheA-CheW-Tap

Type:

state transition

Pathway Components:

CheA + CheW + Tap -> CheA-CheW-Tap

Components:

Function	Name	Type
reactant	CheA	protein
product	CheA-CheW-Tap	complex
reactant	CheW	protein
reactant	Tap	protein

Name:

CheA + CheW + Tar -> CheA-CheW-Tar

Description:

Reaction transforming CheA, CheW, Tar into CheA-CheW-Tar

Type:

state transition

Pathway Components:

CheA + CheW + Tar -> CheA-CheW-Tar

Components:

Function	Name	Type
reactant	CheA	protein
product	CheA-CheW-Tar	complex
reactant	CheW	protein
reactant	Tar	protein

Name:

motAB-cheAW_mRNA -> CheW

Description:

Translation of CheW

Type:

translation

Pathway Components:

motAB-cheAW_mRNA -> CheW

Components:

Function	Name	Type
product	CheW	protein
reactant	motAB-cheAW_mRNA	RNA

Name:

efeU_1U_2_mRNA -> NP

Description:

Translation of NP

Type:

translation

Pathway Components:

efeU_1U_2_mRNA -> NP

Components:

Function	Name	Type
product	NP	protein
reactant	efeU_1U_2_mRNA	RNA

Name:

ldtC_mRNA -> LdtC

Description:

Translation of LdtC

Type:

translation

Pathway Components:

ldtC_mRNA -> LdtC

Components:

Function	Name	Type
product	LdtC	protein
reactant	ldtC_mRNA	RNA

Name:

nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + glycine -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + ala

Description:

Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, glycine into nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide, ala

Type:

state transition

Pathway Components:

nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + glycine - LdtC - LdtD -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + ala

Components:

Function	Name	Type
catalyzer	LdtC	protein
catalyzer	LdtD	protein
product	ala	simple_molecule
reactant	glycine	simple_molecule
reactant	nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide	simple_molecule
product	nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide	simple_molecule

Name:

nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide + ala

Description:

Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide into nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide, ala

Type:

state transition

Pathway Components:

nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide - LdtC - LdtD -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide + ala

Components:

Function	Name	Type
catalyzer	LdtC	protein
catalyzer	LdtD	protein
product	ala	simple_molecule
product	nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide	simple_molecule
reactant	nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide	simple_molecule

Name:

peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + MlpA -> peptidoglycan tripeptide-Lpp crosslink + ala

Description:

Reaction transforming peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, MlpA into peptidoglycan tripeptide-Lpp crosslink, ala

Type:

state transition

Pathway Components:

peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + MlpA - LdtC -> peptidoglycan tripeptide-Lpp crosslink + ala

Components:

Function	Name	Type
catalyzer	LdtC	protein
reactant	MlpA	simple_molecule
product	ala	simple_molecule
product	peptidoglycan tripeptide-Lpp crosslink	simple_molecule
reactant	peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide	simple_molecule

Name:

acrD_mRNA -> AcrD

Description:

Translation of AcrD

Type:

translation

Pathway Components:

acrD_mRNA -> AcrD

Components:

Function	Name	Type
product	AcrD	protein
reactant	acrD_mRNA	RNA

Name:

AcrA + TolC + AcrD -> AcrD-AcrA-TolC

Description:

Reaction transforming AcrA, TolC, AcrD into AcrD-AcrA-TolC

Type:

state transition

Pathway Components:

AcrA + TolC + AcrD -> AcrD-AcrA-TolC

Components:

Function	Name	Type
reactant	AcrA	protein
reactant	AcrD	protein
product	AcrD-AcrA-TolC	complex
reactant	TolC	protein

Name:

drug_Ext -> drug

Description:

Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.

Type:

transport

Pathway Components:

drug_Ext - AcrD-AcrA-TolC - TolC-MdtC-MdtB-MdtA -> drug

Components:

Function	Name	Type
catalyzer	AcrD-AcrA-TolC	complex
catalyzer	TolC-MdtC-MdtB-MdtA	complex
product	drug	simple_molecule
reactant	drug_Ext	simple_molecule

Name:

dsbC_mRNA -> DsbC

Description:

Translation of DsbC

Type:

translation

Pathway Components:

dsbC_mRNA -> DsbC

Components:

Function	Name	Type
product	DsbC	protein
reactant	dsbC_mRNA	RNA

Name:

protein with incorrect disulfide bonds -> protein with correct disulfide bonds

Description:

Reaction transforming protein with incorrect disulfide bonds into protein with correct disulfide bonds

Type:

state transition

Pathway Components:

protein with incorrect disulfide bonds - DsbC -> protein with correct disulfide bonds

Components:

Function	Name	Type
catalyzer	DsbC	protein
product	protein with correct disulfide bonds	simple_molecule
reactant	protein with incorrect disulfide bonds	simple_molecule

Name:

yebE_mRNA -> YebE

Description:

Translation of YebE

Type:

translation

Pathway Components:

yebE_mRNA -> YebE

Components:

Function	Name	Type
product	YebE	protein
reactant	yebE_mRNA	RNA

Name:

ung_mRNA -> Ung

Description:

Translation of Ung

Type:

translation

Pathway Components:

ung_mRNA -> Ung

Components:

Function	Name	Type
product	Ung	protein
reactant	ung_mRNA	RNA

Name:

DNA with uracil -> DNA containing an apyrimidinic site + uracil

Description:

Reaction transforming DNA with uracil into DNA containing an apyrimidinic site, uracil

Type:

state transition

Pathway Components:

DNA with uracil - Ung -> DNA containing an apyrimidinic site + uracil

Components:

Function	Name	Type
product	DNA containing an apyrimidinic site	simple_molecule
reactant	DNA with uracil	simple_molecule
catalyzer	Ung	protein
product	uracil	simple_molecule

Name:

ompC_mRNA -> OmpC

Description:

Translation of OmpC

Type:

translation

Pathway Components:

ompC_mRNA -> OmpC

Components:

Function	Name	Type
product	OmpC	protein
reactant	ompC_mRNA	RNA

Name:

yidQ_mRNA -> YidQ

Description:

Translation of YidQ

Type:

translation

Pathway Components:

yidQ_mRNA -> YidQ

Components:

Function	Name	Type
product	YidQ	protein
reactant	yidQ_mRNA	RNA

Name:

cyaR_mRNA -> RNA:CyaR

Description:

Translation of RNA:CyaR

Type:

translation

Pathway Components:

cyaR_mRNA -> RNA:CyaR

Components:

Function	Name	Type
product	RNA:CyaR	protein
reactant	cyaR_mRNA	RNA

Name:

cpxRA_mRNA -> CpxR

Description:

Translation of CpxR

Type:

translation

Pathway Components:

cpxRA_mRNA -> CpxR

Components:

Function	Name	Type
product	CpxR	protein
reactant	cpxRA_mRNA	RNA

Name:

cpxRA_mRNA -> CpxA

Description:

Translation of CpxA

Type:

translation

Pathway Components:

cpxRA_mRNA -> CpxA

Components:

Function	Name	Type
product	CpxA	protein
reactant	cpxRA_mRNA	RNA

Name:

yqaE_mRNA -> YqaE

Description:

Translation of YqaE

Type:

translation

Pathway Components:

yqaE_mRNA -> YqaE

Components:

Function	Name	Type
product	YqaE	protein
reactant	yqaE_mRNA	RNA

Name:

marRAB_mRNA -> MarR

Description:

Translation of MarR

Type:

translation

Pathway Components:

marRAB_mRNA -> MarR

Components:

Function	Name	Type
product	MarR	protein
reactant	marRAB_mRNA	RNA

Name:

marRAB_mRNA -> MarA

Description:

Translation of MarA

Type:

translation

Pathway Components:

marRAB_mRNA -> MarA

Components:

Function	Name	Type
product	MarA	protein
reactant	marRAB_mRNA	RNA

Name:

marRAB_mRNA -> MarB

Description:

Translation of MarB

Type:

translation

Pathway Components:

marRAB_mRNA -> MarB

Components:

Function	Name	Type
product	MarB	protein
reactant	marRAB_mRNA	RNA

Name:

mdtABCD-baeSR_mRNA -> MdtA

Description:

Translation of MdtA

Type:

translation

Pathway Components:

mdtABCD-baeSR_mRNA -> MdtA

Components:

Function	Name	Type
product	MdtA	protein
reactant	mdtABCD-baeSR_mRNA	RNA

Name:

MdtB + MdtC + TolC + MdtA -> TolC-MdtC-MdtB-MdtA

Description:

Reaction transforming MdtB, MdtC, TolC, MdtA into TolC-MdtC-MdtB-MdtA

Type:

state transition

Pathway Components:

MdtB + MdtC + TolC + MdtA -> TolC-MdtC-MdtB-MdtA

Components:

Function	Name	Type
reactant	MdtA	protein
reactant	MdtB	protein
reactant	MdtC	protein
reactant	TolC	protein
product	TolC-MdtC-MdtB-MdtA	complex

Name:

novobiocin_Ext -> novobiocin

Description:

Transport of novobiocin_Ext through a bacterial membrane, leading to the presence of novobiocin inside the cell.

Type:

transport

Pathway Components:

novobiocin_Ext - TolC-MdtC-MdtB-MdtA -> novobiocin

Components:

Function	Name	Type
catalyzer	TolC-MdtC-MdtB-MdtA	complex
product	novobiocin	simple_molecule
reactant	novobiocin_Ext	simple_molecule

Name:

deoxycholate_Ext -> deoxycholate

Description:

Transport of deoxycholate_Ext through a bacterial membrane, leading to the presence of deoxycholate inside the cell.

Type:

transport

Pathway Components:

deoxycholate_Ext - TolC-MdtC-MdtB-MdtA -> deoxycholate

Components:

Function	Name	Type
catalyzer	TolC-MdtC-MdtB-MdtA	complex
product	deoxycholate	simple_molecule
reactant	deoxycholate_Ext	simple_molecule

Name:

mdtABCD-baeSR_mRNA -> MdtB

Description:

Translation of MdtB

Type:

translation

Pathway Components:

mdtABCD-baeSR_mRNA -> MdtB

Components:

Function	Name	Type
product	MdtB	protein
reactant	mdtABCD-baeSR_mRNA	RNA

Name:

mdtABCD-baeSR_mRNA -> MdtC

Description:

Translation of MdtC

Type:

translation

Pathway Components:

mdtABCD-baeSR_mRNA -> MdtC

Components:

Function	Name	Type
product	MdtC	protein
reactant	mdtABCD-baeSR_mRNA	RNA

Name:

mdtABCD-baeSR_mRNA -> MdtD

Description:

Translation of MdtD

Type:

translation

Pathway Components:

mdtABCD-baeSR_mRNA -> MdtD

Components:

Function	Name	Type
product	MdtD	protein
reactant	mdtABCD-baeSR_mRNA	RNA

Name:

mdtABCD-baeSR_mRNA -> BaeS

Description:

Translation of BaeS

Type:

translation

Pathway Components:

mdtABCD-baeSR_mRNA -> BaeS

Components:

Function	Name	Type
product	BaeS	protein
reactant	mdtABCD-baeSR_mRNA	RNA

Name:

mdtABCD-baeSR_mRNA -> BaeR

Description:

Translation of BaeR

Type:

translation

Pathway Components:

mdtABCD-baeSR_mRNA -> BaeR

Components:

Function	Name	Type
product	BaeR	protein
reactant	mdtABCD-baeSR_mRNA	RNA

Name:

dgcZ_mRNA -> DgcZ

Description:

Translation of DgcZ

Type:

translation

Pathway Components:

dgcZ_mRNA -> DgcZ

Components:

Function	Name	Type
product	DgcZ	protein
reactant	dgcZ_mRNA	RNA

Name:

guanosine-triphosphate -> diphosphate + c-di-GMP

Description:

Reaction transforming guanosine-triphosphate into diphosphate, c-di-GMP

Type:

state transition

Pathway Components:

guanosine-triphosphate - DgcZ - c-di-GMP -> diphosphate + c-di-GMP

Components:

Function	Name	Type
catalyzer	DgcZ	protein
inhibitor	c-di-GMP	simple_molecule
product	c-di-GMP	simple_molecule
product	diphosphate	simple_molecule
reactant	guanosine-triphosphate	simple_molecule

Name:

spy_mRNA -> Spy

Description:

Translation of Spy

Type:

translation

Pathway Components:

spy_mRNA -> Spy

Components:

Function	Name	Type
product	Spy	protein
reactant	spy_mRNA	RNA

Name:

skp-lpxD-fabZ-lpxA_mRNA -> Skp

Description:

Translation of Skp

Type:

translation

Pathway Components:

skp-lpxD-fabZ-lpxA_mRNA -> Skp

Components:

Function	Name	Type
product	Skp	protein
reactant	skp-lpxD-fabZ-lpxA_mRNA	RNA

Name:

skp-lpxD-fabZ-lpxA_mRNA -> LpxD

Description:

Translation of LpxD

Type:

translation

Pathway Components:

skp-lpxD-fabZ-lpxA_mRNA -> LpxD

Components:

Function	Name	Type
product	LpxD	protein
reactant	skp-lpxD-fabZ-lpxA_mRNA	RNA

Name:

UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + beta-hydroxymyristoyl-[acp] -> UDP-2,3-diacyl-glucosamine + AcpP

Description:

Reaction transforming UDP-3-O-(3-hydroxytetradecanoyl)glucosamine, beta-hydroxymyristoyl-[acp] into UDP-2,3-diacyl-glucosamine, AcpP

Type:

state transition

Pathway Components:

UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + beta-hydroxymyristoyl-[acp] - LpxD - AcpP -> UDP-2,3-diacyl-glucosamine + AcpP

Components:

Function	Name	Type
inhibitor	AcpP	simple_molecule
product	AcpP	simple_molecule
catalyzer	LpxD	protein
product	UDP-2,3-diacyl-glucosamine	simple_molecule
reactant	UDP-3-O-(3-hydroxytetradecanoyl)glucosamine	simple_molecule
reactant	beta-hydroxymyristoyl-[acp]	simple_molecule

Name:

skp-lpxD-fabZ-lpxA_mRNA -> FabZ

Description:

Translation of FabZ

Type:

translation

Pathway Components:

skp-lpxD-fabZ-lpxA_mRNA -> FabZ

Components:

Function	Name	Type
product	FabZ	protein
reactant	skp-lpxD-fabZ-lpxA_mRNA	RNA

Name:

(3R)-3-hydroxyglutaryl-[acp] methyl ester -> enoylglutaryl-[acp] methyl ester

Description:

Reaction transforming (3R)-3-hydroxyglutaryl-[acp] methyl ester into enoylglutaryl-[acp] methyl ester

Type:

state transition

Pathway Components:

(3R)-3-hydroxyglutaryl-[acp] methyl ester - FabZ -> enoylglutaryl-[acp] methyl ester

Components:

Function	Name	Type
reactant	(3R)-3-hydroxyglutaryl-[acp] methyl ester	simple_molecule
catalyzer	FabZ	protein
product	enoylglutaryl-[acp] methyl ester	simple_molecule

Name:

3-hydroxypimeloyl-[acp] methyl ester -> enoylpimelyl-[acp] methyl ester

Description:

Reaction transforming 3-hydroxypimeloyl-[acp] methyl ester into enoylpimelyl-[acp] methyl ester

Type:

state transition

Pathway Components:

3-hydroxypimeloyl-[acp] methyl ester - FabZ -> enoylpimelyl-[acp] methyl ester

Components:

Function	Name	Type
reactant	3-hydroxypimeloyl-[acp] methyl ester	simple_molecule
catalyzer	FabZ	protein
product	enoylpimelyl-[acp] methyl ester	simple_molecule

Name:

(3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp] -> Trans-D2-cis-D7-tetradecenoyl-ACPs

Description:

Reaction transforming (3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp] into Trans-D2-cis-D7-tetradecenoyl-ACPs

Type:

state transition

Pathway Components:

(3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp] - FabZ -> Trans-D2-cis-D7-tetradecenoyl-ACPs

Components:

Function	Name	Type
reactant	(3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp]	simple_molecule
catalyzer	FabZ	protein
product	Trans-D2-cis-D7-tetradecenoyl-ACPs	simple_molecule

Name:

(3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp] -> trans-Δ3-cis-Δ9-hexadecenoyl-[acp]

Description:

Reaction transforming (3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp] into trans-Δ3-cis-Δ9-hexadecenoyl-[acp]

Type:

state transition

Pathway Components:

(3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp] - FabZ -> trans-Δ3-cis-Δ9-hexadecenoyl-[acp]

Components:

Function	Name	Type
reactant	(3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp]	simple_molecule
catalyzer	FabZ	protein
product	trans-Δ3-cis-Δ9-hexadecenoyl-[acp]	simple_molecule

Name:

beta-OH-acyl-ACP -> CH3(CH2)xCH=CHCO-S-ACP

Description:

Reaction transforming beta-OH-acyl-ACP into CH3(CH2)xCH=CHCO-S-ACP

Type:

state transition

Pathway Components:

beta-OH-acyl-ACP - FabZ -> CH3(CH2)xCH=CHCO-S-ACP

Components:

Function	Name	Type
product	CH3(CH2)xCH=CHCO-S-ACP	simple_molecule
catalyzer	FabZ	protein
reactant	beta-OH-acyl-ACP	simple_molecule

Name:

(3R)-3-hydroxy-cis-vaccenoyl-[acp] -> (2E,11Z)-octadeca-2,11-dienoyl-[acp]

Description:

Reaction transforming (3R)-3-hydroxy-cis-vaccenoyl-[acp] into (2E,11Z)-octadeca-2,11-dienoyl-[acp]

Type:

state transition

Pathway Components:

(3R)-3-hydroxy-cis-vaccenoyl-[acp] - FabZ -> (2E,11Z)-octadeca-2,11-dienoyl-[acp]

Components:

Function	Name	Type
product	(2E,11Z)-octadeca-2,11-dienoyl-[acp]	simple_molecule
reactant	(3R)-3-hydroxy-cis-vaccenoyl-[acp]	simple_molecule
catalyzer	FabZ	protein

Name:

AcpP -> crotonyl-[acp]

Description:

Reaction transforming AcpP into crotonyl-[acp]

Type:

state transition

Pathway Components:

AcpP - FabZ -> crotonyl-[acp]

Components:

Function	Name	Type
reactant	AcpP	simple_molecule
catalyzer	FabZ	protein
product	crotonyl-[acp]	simple_molecule

Name:

beta-hydroxymyristoyl-[acp] -> trans tetradec-2-enoyl-[acp]

Description:

Reaction transforming beta-hydroxymyristoyl-[acp] into trans tetradec-2-enoyl-[acp]

Type:

state transition

Pathway Components:

beta-hydroxymyristoyl-[acp] - FabZ -> trans tetradec-2-enoyl-[acp]

Components:

Function	Name	Type
catalyzer	FabZ	protein
reactant	beta-hydroxymyristoyl-[acp]	simple_molecule
product	trans tetradec-2-enoyl-[acp]	simple_molecule

Name:

beta-hydroxydodecanoyl-[acp] -> (2E)-dodec-2-enoyl-[acp]

Description:

Reaction transforming beta-hydroxydodecanoyl-[acp] into (2E)-dodec-2-enoyl-[acp]

Type:

state transition

Pathway Components:

beta-hydroxydodecanoyl-[acp] - FabZ -> (2E)-dodec-2-enoyl-[acp]

Components:

Function	Name	Type
product	(2E)-dodec-2-enoyl-[acp]	simple_molecule
catalyzer	FabZ	protein
reactant	beta-hydroxydodecanoyl-[acp]	simple_molecule

Name:

beta-hydroxyhexanoyl-[acp] -> trans hex-2-enoyl-[acp]

Description:

Reaction transforming beta-hydroxyhexanoyl-[acp] into trans hex-2-enoyl-[acp]

Type:

state transition

Pathway Components:

beta-hydroxyhexanoyl-[acp] - FabZ -> trans hex-2-enoyl-[acp]

Components:

Function	Name	Type
catalyzer	FabZ	protein
reactant	beta-hydroxyhexanoyl-[acp]	simple_molecule
product	trans hex-2-enoyl-[acp]	simple_molecule

Name:

beta-hydroxydecanoyl-[acp] -> (2E)-dec-2-enoyl-[acp]

Description:

Reaction transforming beta-hydroxydecanoyl-[acp] into (2E)-dec-2-enoyl-[acp]

Type:

state transition

Pathway Components:

beta-hydroxydecanoyl-[acp] - FabZ -> (2E)-dec-2-enoyl-[acp]

Components:

Function	Name	Type
product	(2E)-dec-2-enoyl-[acp]	simple_molecule
catalyzer	FabZ	protein
reactant	beta-hydroxydecanoyl-[acp]	simple_molecule

Name:

AcpP -> trans hexadecenoyl-[acp]

Description:

Reaction transforming AcpP into trans hexadecenoyl-[acp]

Type:

state transition

Pathway Components:

AcpP - FabZ -> trans hexadecenoyl-[acp]

Components:

Function	Name	Type
reactant	AcpP	simple_molecule
catalyzer	FabZ	protein
product	trans hexadecenoyl-[acp]	simple_molecule

Name:

skp-lpxD-fabZ-lpxA_mRNA -> LpxA

Description:

Translation of LpxA

Type:

translation

Pathway Components:

skp-lpxD-fabZ-lpxA_mRNA -> LpxA

Components:

Function	Name	Type
product	LpxA	protein
reactant	skp-lpxD-fabZ-lpxA_mRNA	RNA

Name:

beta-hydroxymyristoyl-[acp] + UDP-GlcNAc -> UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine + AcpP

Description:

Reaction transforming beta-hydroxymyristoyl-[acp], UDP-GlcNAc into UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine, AcpP

Type:

state transition

Pathway Components:

beta-hydroxymyristoyl-[acp] + UDP-GlcNAc - LpxA -> UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine + AcpP

Components:

Function	Name	Type
product	AcpP	simple_molecule
catalyzer	LpxA	protein
product	UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine	simple_molecule
reactant	UDP-GlcNAc	simple_molecule
reactant	beta-hydroxymyristoyl-[acp]	simple_molecule

Name:

rprA_mRNA -> RNA:RprA

Description:

Translation of RNA:RprA

Type:

translation

Pathway Components:

rprA_mRNA -> RNA:RprA

Components:

Function	Name	Type
product	RNA:RprA	protein
reactant	rprA_mRNA	RNA

Name:

rpoH_mRNA -> RpoH

Description:

Translation of RpoH

Type:

translation

Pathway Components:

rpoH_mRNA -> RpoH

Components:

Function	Name	Type
product	RpoH	protein
reactant	rpoH_mRNA	RNA

Name:

RpoH + RpoC + RpoA + RpoB -> RpoB-RpoC-RpoA-RpoH

Description:

Reaction transforming RpoH, RpoC, RpoA, RpoB into RpoB-RpoC-RpoA-RpoH

Type:

state transition

Pathway Components:

RpoH + RpoC + RpoA + RpoB -> RpoB-RpoC-RpoA-RpoH

Components:

Function	Name	Type
reactant	RpoA	protein
reactant	RpoB	protein
product	RpoB-RpoC-RpoA-RpoH	complex
reactant	RpoC	protein
reactant	RpoH	protein

Name:

ldtD_mRNA -> LdtD

Description:

Translation of LdtD

Type:

translation

Pathway Components:

ldtD_mRNA -> LdtD

Components:

Function	Name	Type
product	LdtD	protein
reactant	ldtD_mRNA	RNA

Name:

nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide -> nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing) + ala

Description:

Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide into nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing), ala

Type:

state transition

Pathway Components:

nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide - LdtD -> nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing) + ala

Components:

Function	Name	Type
catalyzer	LdtD	protein
product	ala	simple_molecule
reactant	nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide	simple_molecule
product	nascent peptidoglycan with L,D cross links (meso-diaminopimelate containing)	simple_molecule
reactant	peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide	simple_molecule

Name:

peptidoglycan tetrapeptide, glycan chain 1 + peptidoglycan tetrapeptide, glycan chain 2 -> peptidoglycan DAP-DAP crosslink + ala

Description:

Reaction transforming peptidoglycan tetrapeptide, glycan chain 1, peptidoglycan tetrapeptide, glycan chain 2 into peptidoglycan DAP-DAP crosslink, ala

Type:

state transition

Pathway Components:

peptidoglycan tetrapeptide, glycan chain 1 + peptidoglycan tetrapeptide, glycan chain 2 - LdtD -> peptidoglycan DAP-DAP crosslink + ala

Components:

Function	Name	Type
catalyzer	LdtD	protein
product	ala	simple_molecule
product	peptidoglycan DAP-DAP crosslink	simple_molecule
reactant	peptidoglycan tetrapeptide, glycan chain 1	simple_molecule
reactant	peptidoglycan tetrapeptide, glycan chain 2	simple_molecule

Name:

UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine -> UDP-3-O-(3-hydroxytetradecanoyl)glucosamine

Description:

Transformation of UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine into UDP-3-O-(3-hydroxytetradecanoyl)glucosamine by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine / UDPACYLGLCNACDEACETYL-RXN / UDP-3-O-(3-hydroxytetradecanoyl)glucosamine

Components:

Function	Name	Type
reactant	UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine	simple_molecule
product	UDP-3-O-(3-hydroxytetradecanoyl)glucosamine	simple_molecule

Name:

enoylglutaryl-[acp] methyl ester -> 3-hydroxypimeloyl-[acp] methyl ester

Description:

Transformation of enoylglutaryl-[acp] methyl ester into 3-hydroxypimeloyl-[acp] methyl ester by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

enoylglutaryl-[acp] methyl ester / RXN-11478 / RXN-11479 / RXN-11480 / 3-hydroxypimeloyl-[acp] methyl ester

Components:

Function	Name	Type
product	3-hydroxypimeloyl-[acp] methyl ester	simple_molecule
reactant	enoylglutaryl-[acp] methyl ester	simple_molecule

Name:

Trans-D2-cis-D7-tetradecenoyl-ACPs -> (3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp]

Description:

Transformation of Trans-D2-cis-D7-tetradecenoyl-ACPs into (3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

Trans-D2-cis-D7-tetradecenoyl-ACPs / RXN-10657 / RXN-10658 / RXN-10659 / (3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp]

Components:

Function	Name	Type
product	(3R)-3-hydroxy cis Δ9-hexadecenoyl-[acp]	simple_molecule
reactant	Trans-D2-cis-D7-tetradecenoyl-ACPs	simple_molecule

Name:

AcpP -> (3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp]

Description:

Transformation of AcpP into (3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

AcpP / RXN0-2145 / RXN-10654 / RXN-10655 / (3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp]

Components:

Function	Name	Type
product	(3R)-3-hydroxy cis Δ7-tetradecenoyl-[acp]	simple_molecule
reactant	AcpP	simple_molecule

Name:

trans-Δ3-cis-Δ9-hexadecenoyl-[acp] -> (3R)-3-hydroxy-cis-vaccenoyl-[acp]

Description:

Transformation of trans-Δ3-cis-Δ9-hexadecenoyl-[acp] into (3R)-3-hydroxy-cis-vaccenoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

trans-Δ3-cis-Δ9-hexadecenoyl-[acp] / RXN-10661 / 2.3.1.179-RXN / RXN-9556 / (3R)-3-hydroxy-cis-vaccenoyl-[acp]

Components:

Function	Name	Type
product	(3R)-3-hydroxy-cis-vaccenoyl-[acp]	simple_molecule
reactant	trans-Δ3-cis-Δ9-hexadecenoyl-[acp]	simple_molecule

Name:

(2E)-dec-2-enoyl-[acp] -> AcpP

Description:

Transformation of (2E)-dec-2-enoyl-[acp] into AcpP by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

(2E)-dec-2-enoyl-[acp] / 5.3.3.14-RXN / RXN0-2141 / RXN0-2142 / AcpP

Components:

Function	Name	Type
reactant	(2E)-dec-2-enoyl-[acp]	simple_molecule
product	AcpP	simple_molecule

Name:

CH3(CH2)xCH=CHCO-S-ACP -> beta-hydroxydecanoyl-[acp]

Description:

Transformation of CH3(CH2)xCH=CHCO-S-ACP into beta-hydroxydecanoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

CH3(CH2)xCH=CHCO-S-ACP / ENOYL-ACP-REDUCT-NADH-RXN / 3-OXOACYL-ACP-SYNTH-RXN / 3-OXOACYL-ACP-REDUCT-RXN / beta-hydroxydecanoyl-[acp]

Components:

Function	Name	Type
reactant	CH3(CH2)xCH=CHCO-S-ACP	simple_molecule
product	beta-hydroxydecanoyl-[acp]	simple_molecule

Name:

crotonyl-[acp] -> beta-hydroxyhexanoyl-[acp]

Description:

Transformation of crotonyl-[acp] into beta-hydroxyhexanoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

crotonyl-[acp] / RXN-9657 / RXN-9516 / RXN-9518 / beta-hydroxyhexanoyl-[acp]

Components:

Function	Name	Type
product	beta-hydroxyhexanoyl-[acp]	simple_molecule
reactant	crotonyl-[acp]	simple_molecule

Name:

(2E)-dodec-2-enoyl-[acp] -> beta-hydroxymyristoyl-[acp]

Description:

Transformation of (2E)-dodec-2-enoyl-[acp] into beta-hydroxymyristoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

(2E)-dodec-2-enoyl-[acp] / RXN-9661 / RXN-9535 / RXN-9536 / beta-hydroxymyristoyl-[acp]

Components:

Function	Name	Type
reactant	(2E)-dodec-2-enoyl-[acp]	simple_molecule
product	beta-hydroxymyristoyl-[acp]	simple_molecule

Name:

trans tetradec-2-enoyl-[acp] -> AcpP

Description:

Transformation of trans tetradec-2-enoyl-[acp] into AcpP by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

trans tetradec-2-enoyl-[acp] / RXN-9662 / RXN-9539 / RXN-9540 / AcpP

Components:

Function	Name	Type
product	AcpP	simple_molecule
reactant	trans tetradec-2-enoyl-[acp]	simple_molecule

Name:

(2E)-dec-2-enoyl-[acp] -> beta-hydroxydodecanoyl-[acp]

Description:

Transformation of (2E)-dec-2-enoyl-[acp] into beta-hydroxydodecanoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

(2E)-dec-2-enoyl-[acp] / RXN-9660 / RXN-9531 / RXN-9532 / beta-hydroxydodecanoyl-[acp]

Components:

Function	Name	Type
reactant	(2E)-dec-2-enoyl-[acp]	simple_molecule
product	beta-hydroxydodecanoyl-[acp]	simple_molecule

Name:

trans hex-2-enoyl-[acp] -> beta-hydroxydecanoyl-[acp]

Description:

Transformation of trans hex-2-enoyl-[acp] into beta-hydroxydecanoyl-[acp] by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

trans hex-2-enoyl-[acp] / RXN-9658 / RXN-9523 / RXN-9524 / 4.2.1.59-RXN / RXN-9659 / RXN-9527 / RXN-9528 / beta-hydroxydecanoyl-[acp]

Components:

Function	Name	Type
product	beta-hydroxydecanoyl-[acp]	simple_molecule
reactant	trans hex-2-enoyl-[acp]	simple_molecule

Gensor Unit Map