;Computational Prediction of Promoters in the Escherichia coli genome. ;Author: Araceli M. Huerta (amhuerta@ccg.unam.mx) ;Pleace cite: A.M. Huerta, J. Collado-Vides, J Mol Biol. 333:261-78 (2003). ;File Title: Sigma70, Sigma24, Sigma28, Sigma32, Sigma38, & Sigma54 promoter predictions in E. coli K12. ;Predictions were done in E. coli K12 from the NCBI version: NC_000913.2 (13-FEB-2011) ;Predictions were calibrated using RegulonDB Version 7.0 (http://regulondb.ccg.unam.mx), ;that does correspond to Ecocyc version 14.5 ;The data would be distributed following the Licence: http://regulondb.ccg.unam.mx/menu/download/full_version/license_regulondb_registration.jsp ; ;The data contain 4342 Sigma70 promoter predictions: lowest score = 1.334 (P-value = 0.000850233109777606), highest score = 6.726 (P-value = 1.44124966379965e-06) ;The data contain 3964 Sigma38 promoter predictions: lowest score = 2.48 (P-value = 0.0139817831594055), highest score = 7.31 (P-value = 1.34034288573999e-05) ;The data contain 752 Sigma32 promoter predictions: lowest score = 1.865 (P-value = 0.000248516827317573), highest score = 10.953 (P-value = 6.30082606126306e-08) ;The data contain 524 Sigma24 promoter predictions: lowest score = -3.810 (P-value = 0.000106219802845229), highest score = 9.705 (P-value = 1.01563147242684e-06) ;The data contain 212 Sigma28 promoter predictions: lowest score = 2.996 (P-value = 8.87222371802212e-05), highest score = 14.789 (P-value = 6.00904502872066e-09) ;The data contain 79 Sigma54 promoter predictions: lowest score = 0.480 (P-value = 3.58052901567964e-06), highest score = 12.405 (P-value = 1.83692991299296e-07) ;Promoter Predictions can be read in http://www.ccg.unam.mx/Computational_Genomics/PromoterTools ;--------------------------------------------------------------------------------------- ;(1)Lend (2)Rend (3)Strand (4)Gene (5)Promoter_Name (6)Sigma (7)-35Box_Lend (8)-35Box_Rend (9)-35Box (10)Spacer (11)-10Box_Lend (12)-10Box_Rend (13)-10Box (14)Pos_1 (15)Score (16)Homology_Level (17)P-value (18)Signicance_Level (19)Evidence (20)EvidenceType (21)Sequence 5234 5530 F yaaX yaaXp1 Sigma70 5161 5166 ATAACA 18 5185 5190 TAATCT 5195 3.018 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagaATAACAaccgccgttctcatcgagTAATCTccggAtatcg 5234 5530 F yaaX yaaXp2 Sigma70 5006 5011 ATGAAT 17 5029 5034 CATTAT 5039 3.156 good homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgATGAATcatcagtaaaatctattCATTATctcaAtcagg 5234 5530 F yaaX yaaXp3 Sigma70 5051 5056 TTGCTT 19 5076 5081 TATGAA 5088 3.25 good homology 0.000101039 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggtTTGCTTttatgcagcccggctttttTATGAAgaaattAtggag 5234 5530 F yaaX yaaXp4 Sigma70 4991 4996 TTGCGT 21 5018 5023 TAAAAT 5030 4.513 high homology 2.30E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTGCGTaaattgatgatgaatcatcagTAAAATctattcAttatc 5683 6459 R yaaA yaaAp2 Sigma70 6511 6516 ATCAAC 17 6488 6493 TAAAGT 6483 2.916 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatcgATCAACtcattctcatttttTGcTAAAGTcggcAtaaat 5683 6459 R yaaA yaaAp4 Sigma70 6674 6679 TTTACT 18 6650 6655 TACCAT 6644 3.708 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccatTTTACTgctctcgcctgtggttcaTACCATtgccaGtgatt 5683 6459 R yaaA yaaAp5 Sigma70 6645 6650 TTGCCA 19 6620 6625 TAAACT 6615 5.38 high homology 3.14E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taccaTTGCCAgtgattatctacgccagcgTAAACTcggcGtgcgc 6529 7959 R yaaJ yaaJp1 Sigma70 8015 8020 TTAAAC 20 7989 7994 GAAAGT 7984 1.904 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttcTTAAACaattggtaacgtttacacagGAAAGTcatcGcgacc 6529 7959 R yaaJ yaaJp4 Sigma70 8045 8050 TTATCA 16 8023 8028 TATACT 8017 4.043 high homology 3.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaagTTATCAagtacctcgtagcgtaTATACTtcttaAacaat 9306 9893 F mog mogp1 Sigma70 9240 9245 CTGTCT 18 9264 9269 TATCAT 9274 2.828 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaagcCTGTCTgtcactcccttcgcagtgTATCATtctgTttaac 9306 9893 F mog mogp2 Sigma70 9142 9147 TTGCTA 17 9165 9170 GAAAAA 9177 3.826 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTGCTAttgaccaggaaaaactgGAAAAAatgatcGgcgat 9928 10494 R yaaH yaaHp2 Sigma70 10618 10623 TTTTCA 21 10591 10596 GACACT 10585 2.313 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTTTCAttttcccctcaaaagatcgtaGACACTgccccActggc 9928 10494 R yaaH yaaHp4 Sigma70 10556 10561 CTGAAA 18 10532 10537 GAAATT 10526 2.748 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgccCTGAAAacactacagttattcaggGAAATTatttcAccatt 9928 10494 R yaaH yaaHp5 Sigma70 10571 10576 TTATTA 19 10546 10551 TACAGT 10540 2.77 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaTTATTAtgccgcgccctgaaaacacTACAGTtattcAgggaa 9928 10494 R yaaH yaaHp6 Sigma70 10593 10598 TAGACA 17 10570 10575 TATTAT 10564 3.236 good homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgTAGACActgccccactggctgatTATTATgccgcGccctg 10643 11356 R yaaW yaaWp1 Sigma70 11400 11405 CTGAAA 21 11373 11378 CAGAAT 11367 1.793 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacgCTGAAAattatcggcgacgactaacgcCAGAATatagaAgccac 11382 11786 R yaaI yaaIp1 Sigma70 11841 11846 TTATCA 16 11819 11824 TATTCA 11812 2.103 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctctTTATCAgcagtaaactagtgggTATTCAtcccccTacctc 11382 11786 R yaaI yaaIp2 Sigma70 11968 11973 TTCGCG 18 11944 11949 TAAAAT 11938 3.628 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatTTCGCGatatggcaggacaagacgTAAAATtgacaGcaatt 11382 11786 R yaaI yaaIp3 Sigma70 11939 11944 TTGACA 15 11918 11923 TAAAGA 11913 4.17 high homology 1.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTGACAgcaattttattcataTAAAGAatgaAtcgca 11382 11786 R yaaI yaaIp4 Sigma70 11854 11859 CTGAAT 17 11831 11836 TAAACT 11825 4.956 high homology 4.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgcCTGAATcttctctttatcagcagTAAACTagtggGtattc 15445 16557 F insL insLp1 Sigma70 15403 15408 TTAAGG 19 15428 15433 TATGAT 15439 2.51 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctaacTTAAGGgttgtggtattacgccTGaTATGATttaacGtgccg 15445 16557 F insL insLp5 Sigma70 15348 15353 TTGAAG 15 15369 15374 TAAAGT 15380 4.88 high homology 1.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcgTTGAAGatatgcgagcacctgTAAAGTggcggGgatca 16751 16903 R hokC hokCp4 Sigma70 16980 16985 TTACCA 18 16956 16961 TATGCT 16951 4.208 high homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTACCAtcaacccgaggcctcctaTATGCTgaacAcatgt 16952 17006 F sokC sokCp1 Sigma70 16831 16836 TTACCA 19 16856 16861 GATACA 16866 1.96 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctcgTTACCAgcgccgccactacggcggtGATACAgatgAcgatc 16952 17006 F sokC sokCp2 Sigma70 16831 16836 TTACCA 21 16858 16863 TACAGA 16869 2.273 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tctcgTTACCAgcgccgccactacggcggTGaTACAGAtgacgAtcagg 16952 17006 F sokC sokCp3 Sigma70 16903 16908 TTGCTC 15 16924 16929 TACGGT 16935 2.95 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcaTTGCTCtcttctccttgacctTACGGTcagtaAgaggc 19811 20314 R insB insBp2 Sigma70 20363 20368 TTCTCA 15 20342 20347 GAAAAT 20336 2.83 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTCTCAacccggtacgcaccaGAAAATcattgAtatgg 19811 20314 R insB insBp3 Sigma70 20551 20556 CTGCCA 16 20529 20534 TATGAT 20524 3.453 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgCTGCCAacttactgatttagtgTATGATggtgTttttg 27293 28207 F rihC rihCp1 Sigma70 27066 27071 GTGACT 20 27092 27097 TATTCT 27103 2.444 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcggcGTGACTgcgggcgcatcggctccggaTATTCTggtgcAgaatg 27293 28207 F rihC rihCp2 Sigma70 27224 27229 TTAAGT 21 27251 27256 GAAAAT 27261 2.473 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtcgaTTAAGTcattagcagcctaagttaTGcGAAAATgccgGtcttg 34781 35371 R caiE caiEp2 Sigma70 35509 35514 ATGCCG 18 35485 35490 TATATT 35480 3.338 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgaaATGCCGgtagaagaagcgtatcgcTATATTcgcaGcggcg 47246 47776 F kefF kefFp1 Sigma70 47143 47148 TTCAGA 21 47170 47175 TATTAT 47181 3.543 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattgTTCAGAtttctctcttttctgaatcaaTATTATtgactAtaagc 50380 51222 R apaH apaHp1 Sigma70 51294 51299 ATGAAA 20 51268 51273 GACATT 51262 1.894 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgATGAAAatggcgtccctttcagcatcGACATTcccgtAttccg 50380 51222 R apaH apaHp3 Sigma70 51319 51324 ATGCAG 21 51292 51297 GAAAAT 51287 2.343 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaccATGCAGggtcactacgaaatgatcgatGAAAATggcgTccctt 57364 58179 F djlA djlAp1 Sigma70 57255 57260 ATGCAA 16 57277 57282 CACAAT 57288 1.963 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataATGCAAattataggcgatgtccCACAATtgaccGcagcc 57364 58179 F djlA djlAp2 Sigma70 57142 57147 TTGCGC 19 57167 57172 TAACGT 57177 2.08 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacgTTGCGCgtgacaaacggtcagagacTAACGTactcGtcatc 57364 58179 F djlA djlAp3 Sigma70 57236 57241 TTGAAT 16 57258 57263 CAAATT 57268 3.073 poor homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTGAATgacaggtatgataatgCAAATTatagGcgatg 59687 60346 R rluA rluAp2 Sigma70 60552 60557 TTGATG 20 60526 60531 GAAAAA 60519 2.034 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgaTTGATGcagcgcgtaacgaagccgacGAAAAActgtctGccgag 59687 60346 R rluA rluAp3 Sigma70 60398 60403 TTGGCG 18 60374 60379 GATCGT 60369 2.268 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaggTTGGCGtctggatgccctgcgtttGATCGTtgtaAcgcat 72229 72927 R thiQ thiQp1 Sigma70 73087 73092 TTGGCG 20 73061 73066 GATGAT 73056 2.354 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGGCGtggtggcgttgttcggtaacGATGATttccGcaccc 72229 72927 R thiQ thiQp2 Sigma70 73114 73119 TTGCAT 17 73091 73096 GATTTT 73085 4.266 high homology 7.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcctTTGCATgcgtgctgtcgattggtGATTTTggcgtGgtggc 88028 89032 F fruR fruRp1 Sigma70 87943 87948 TTAATT 16 87965 87970 TAATGA 87976 1.913 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgcagTTAATTttctgcgcttagaTGtTAATGAatttaAcccat 88028 89032 F fruR fruRp2 Sigma70 87919 87924 CTGGAA 19 87944 87949 TAATTT 87955 2.19 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaacCTGGAAtaaaagcagttgccgcagtTAATTTtctgcGcttag 88028 89032 F fruR fruRp7 Sigma70 87972 87977 TTTAAC 18 87996 88001 TATGGT 88006 3.418 good homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaTTTAACccataccagtacaatggcTATGGTttttAcattt 88028 89032 F fruR fruRp9 Sigma70 87964 87969 TTAATG 17 87987 87992 TACAAT 87997 4.496 high homology 0.000118571 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agatgTTAATGaatttaacccataccagTACAATggctAtggtt 107705 108217 F secM secMp1 Sigma70 107623 107628 TTCATT 21 107650 107655 TAATGA 107660 1.863 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTCATTcgtgctgtggactgcaggcttTAATGAtaagAtttgt 107705 108217 F secM secMp2 Sigma70 107546 107551 TTTTTT 19 107571 107576 TAAAAA 107582 2.19 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgtTTTTTTttgaattttataagagctaTAAAAAacggtGcgaac 107705 108217 F secM secMp3 Sigma70 107592 107597 TTTTCT 21 107619 107624 TATCTT 107630 2.333 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTTTCTtaagcacttttccgcacaactTATCTTcattcGtgctg 107705 108217 F secM secMp4 Sigma70 107648 107653 TTTAAT 20 107674 107679 TACGTT 107685 2.534 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTTAATgataagatttgtgcgctaaaTACGTTtgaatAtgatc 107705 108217 F secM secMp5 Sigma70 107648 107653 TTTAAT 16 107670 107675 TAAATA 107681 2.643 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTTAATgataagatttgtgcgcTAAATAcgtttGaatat 107705 108217 F secM secMp8 Sigma70 107546 107551 TTTTTT 17 107569 107574 TATAAA 107580 3.546 good homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgtTTTTTTttgaattttataagagcTATAAAaaacgGtgcga 113444 114487 F guaC guaCp1 Sigma70 113198 113203 TTAAGG 20 113224 113229 TATATT 113235 2.284 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcccgTTAAGGcaactatatacctcataattTATATTcccggGaattc 113444 114487 F guaC guaCp2 Sigma70 113222 113227 TTTATA 15 113243 113248 CATGAT 113254 2.39 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cataaTTTATAttcccgggaattcatCATGATtatcaAaacgt 113444 114487 F guaC guaCp3 Sigma70 113383 113388 ATGATA 21 113410 113415 TACCCT 113420 2.683 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgtATGATAgcgtcactggagttgcgctctTACCCTtataGccatt 113444 114487 F guaC guaCp4 Sigma70 113308 113313 TTACCA 18 113332 113337 TAGCGT 113343 2.688 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actatTTACCAggtaaatttatgggattgTAGCGTaaaaaAagaca 113444 114487 F guaC guaCp6 Sigma70 113360 113365 TTGCGC 16 113382 113387 TATGAT 113394 3.233 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtcTTGCGCcgcattgattagtgcgTATGATagcgtcActgga 113444 114487 F guaC guaCp7 Sigma70 113222 113227 TTTATA 18 113246 113251 GATTAT 113256 3.618 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cataaTTTATAttcccgggaattcatcatGATTATcaaaAcgtta 114522 115724 R hofC hofCp1 Sigma70 115943 115948 TTGTGT 19 115918 115923 TATGGT 115912 2.76 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccggTTGTGTacattgctaccacggttttTATGGTcgtacGgcctt 117752 118645 R nadC nadCp3 Sigma70 118693 118698 TTCAGA 17 118670 118675 TATGAT 118664 4.256 high homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccggTTCAGAgtagcatgtttctacctTATGATtcgttAgctat 118733 119284 F ampD ampDp1 Sigma70 118489 118494 TTTCCG 15 118510 118515 TAATAT 118520 3.49 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTTCCGgtaaaagttttgccgTAATATcattGttggc 118733 119284 F ampD ampDp2 Sigma70 118489 118494 TTTCCG 18 118513 118518 TATCAT 118524 3.508 good homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTTCCGgtaaaagttttgccgtaaTATCATtgttgGcatcg 118733 119284 F ampD ampDp3 Sigma70 118647 118652 TTAAAA 21 118674 118679 TAAGGT 118684 3.583 good homology 0.00012465 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatgTTAAAActccagatagctaacgaatcaTAAGGTagaaAcatgc 129407 131260 R yacH yacHp1 Sigma70 131446 131451 CTGAAT 18 131422 131427 GATTGT 131416 2.518 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtggCTGAATcgttaaggatggtctagaGATTGTttcccTccgta 129407 131260 R yacH yacHp2 Sigma70 131504 131509 ATAGCA 17 131481 131486 TAATCT 131476 2.866 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcagaATAGCAggattttgacgaggTGtTAATCTgtttAcaaaa 129407 131260 R yacH yacHp4 Sigma70 131361 131366 ATCCCA 15 131340 131345 TAAACT 131335 2.97 poor homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgaATCCCAagattagtcaaaattTAAACTaccgCctctt 129407 131260 R yacH yacHp5 Sigma70 131493 131498 TTGACG 15 131472 131477 TACAAA 131466 3.6 good homology 9.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggattTTGACGaggtgttaatctgttTACAAAaaagcAacata 142779 143705 F yadG yadGp1 Sigma70 142665 142670 TTTCAT 16 142687 142692 TAACCA 142697 1.883 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtcTTTCATggaggttaacgacctgTAACCAaataAttacg 142779 143705 F yadG yadGp3 Sigma70 142734 142739 TTAAAC 21 142761 142766 TAAGGT 142772 2.663 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgatTTAAACcacagataaagtgtaagaacgTAAGGTaagtaAaaatt 142779 143705 F yadG yadGp4 Sigma70 142684 142689 CTGTAA 19 142709 142714 TAATAT 142720 2.87 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgacCTGTAAccaaataattacgtttggcTAATATagggcAactcc 142779 143705 F yadG yadGp5 Sigma70 142704 142709 TTGGCT 18 142728 142733 GACGAT 142738 2.968 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgtTTGGCTaatatagggcaactccggGACGATttaaAccaca 142779 143705 F yadG yadGp6 Sigma70 142676 142681 TTAACG 17 142699 142704 TACGTT 142710 3.106 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaggTTAACGacctgtaaccaaataatTACGTTtggctAatata 144577 145017 F yadI yadIp1 Sigma70 144384 144389 CTACCT 19 144409 144414 TATTGT 144419 1.79 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtcaCTACCTttggcgtactggtggtcttTATTGTggcgTtttat 145081 146310 F yadE yadEp1 Sigma70 145002 145007 TTTGTA 15 145023 145028 GATTCT 145033 2.42 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cataaTTTGTAtgagtattaacccgcGATTCTgatgGcgctt 145081 146310 F yadE yadEp2 Sigma70 144895 144900 ATGACC 20 144921 144926 TATTGT 144933 2.434 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaccATGACCagttcagagtttcgcgagcgTATTGTcgaactGggtgc 146314 146694 R panD panDp1 Sigma70 146888 146893 TTGTTT 21 146861 146866 TATCAA 146854 2.523 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTGTTTaccgagcagcgttcagagaaaTATCAAttcgttAcaggc 146968 147870 F yadD yadDp2 Sigma70 146905 146910 CTGACG 17 146928 146933 GATACT 146940 3.386 good homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtggCTGACGatagcgcgccttgactgGATACTgccttcAcgcaa 146968 147870 F yadD yadDp3 Sigma70 146861 146866 TTGATA 20 146887 146892 TAAACA 146898 3.814 good homology 3.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgaaTTGATAtttctctgaacgctgctcggTAAACAataaaGaggtg 147944 148795 R panC panCp4 Sigma70 148941 148946 TTGGTA 19 148916 148921 TAAATT 148910 4.1 high homology 5.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcctTTGGTAttaccggcggtcacattccTAAATTcgctaAaaatt 152829 155426 R htrE htrEp2 Sigma70 155580 155585 TTGCAC 19 155555 155560 GAAAGT 155549 2.98 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTGCACcatttagtgatgaggtcatGAAAGTcaatgGcctta 152829 155426 R htrE htrEp5 Sigma70 155469 155474 ATGCCA 19 155444 155449 TATAAT 155438 4.43 high homology 1.24E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtaATGCCAggctgtaatcaggcaaggaTATAATtccgcAggaag 156299 156883 R yadN yadNp4 Sigma70 156937 156942 ATGAAT 18 156913 156918 TAGTCT 156907 3.388 good homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgtcATGAATagtcattcttcaaacatgTAGTCTgactaAtggaa 156299 156883 R yadN yadNp5 Sigma70 157102 157107 TTGCAC 19 157077 157082 TAATTT 157070 3.41 good homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaTTGCACttgtgaacttatttttactTAATTTtgaattAagtaa 156299 156883 R yadN yadNp6 Sigma70 157083 157088 TTTACT 21 157056 157061 TAATTT 157050 3.413 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTACTtaattttgaattaagtaaattTAATTTgttcaAaagct 156299 156883 R yadN yadNp7 Sigma70 157083 157088 TTTACT 15 157062 157067 TAAATT 157055 4.11 high homology 8.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTACTtaattttgaattaagTAAATTtaatttGttcaa 156299 156883 R yadN yadNp8 Sigma70 157058 157063 TTTAAT 15 157037 157042 TAAAGT 157031 4.43 high homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaTTTAATttgttcaaaagcttcTAAAGTgcacaAtaggc 157253 157732 R folK folKp1 Sigma70 157958 157963 ATGGAA 15 157937 157942 TAAGTT 157932 2.37 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcATGGAAactgctggagcatccTAAGTTccgtGcggct 159186 160112 R yadB yadBp2 Sigma70 160344 160349 CTGCGT 17 160321 160326 TAAGCT 160315 2.796 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgaaCTGCGTaaccgcgatcgcgagcgTAAGCTgatcaAaaaga 161501 162031 R ligT ligTp2 Sigma70 162083 162088 TTAACA 17 162060 162065 TAGCAT 162055 4.146 high homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagggTTAACAttcttcgcgccacattgTAGCATcgcgGtaatt 162105 164534 F hrpB hrpBp1 Sigma70 161859 161864 TTCTCT 20 161885 161890 TAAAAA 161896 1.974 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgccTTCTCTttctcggcgctcacttcgccTAAAAAtgccaGagtca 175107 176528 F clcA clcAp1 Sigma70 175001 175006 ATAAAA 20 175027 175032 TACGCT 175038 1.774 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagtATAAAAgttttgtgcatttgaaacatTACGCTttgcaAaggat 175107 176528 F clcA clcAp2 Sigma70 174970 174975 TTGTAC 21 174997 175002 GAGTAT 175007 1.863 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgcTTGTACtggtgcaatcctgatttcttaGAGTATaaaaGttttg 175107 176528 F clcA clcAp3 Sigma70 174978 174983 GTGCAA 16 175000 175005 TATAAA 175012 2.133 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactgGTGCAAtcctgatttcttagagTATAAAagttttGtgcat 175107 176528 F clcA clcAp4 Sigma70 174970 174975 TTGTAC 19 174995 175000 TAGAGT 175006 2.99 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgcTTGTACtggtgcaatcctgatttctTAGAGTataaaAgtttt 175107 176528 F clcA clcAp7 Sigma70 174896 174901 TTCGTA 18 174920 174925 TATTCT 174931 3.688 good homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cctgaTTCGTAgaaaaagtgaatggcTGcTATTCTatgttAttcat 175107 176528 F clcA clcAp10 Sigma70 175018 175023 TTGAAA 17 175041 175046 GATTTT 175052 4.756 high homology 9.17E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcatTTGAAAcattacgctttgcaaagGATTTTcatggAacgtg 177001 177624 R yadS yadSp3 Sigma70 177732 177737 CTGGTT 18 177708 177713 TATTAT 177703 3.208 good homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgaCTGGTTtgaacgtgcaagcccacgTATTATcctcGctgca 177001 177624 R yadS yadSp5 Sigma70 177817 177822 TTACAG 19 177792 177797 TAAAAT 177786 3.81 good homology 5.22E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcaTTACAGgcggaccggaccaaattccTAAAATcaaacAatact 177001 177624 R yadS yadSp6 Sigma70 177727 177732 TTGAAC 16 177705 177710 TATCCT 177700 4.143 high homology 4.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTGAACgtgcaagcccacgtatTATCCTcgctGcacaa 183709 184095 R yaeH yaeHp1 Sigma70 184241 184246 TTATCA 15 184220 184225 TAATTT 184215 2.78 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaattTTATCAccagaataaagcaggTAATTTtttgAttttt 192872 193429 F frr frrp1 Sigma70 192790 192795 TTTAAT 15 192811 192816 CACACT 192823 2.46 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatgTTTAATcagggctatacttagCACACTtccactGtgtgt 192872 193429 F frr frrp3 Sigma70 192776 192781 TTACCC 20 192802 192807 TATACT 192812 3.384 good homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgaTTACCCgtaatatgtttaatcagggcTATACTtagcAcactt 192872 193429 F frr frrp4 Sigma70 192760 192765 CTAATA 17 192783 192788 TAATAT 192794 3.386 good homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atagcCTAATAatccagacgattacccgTAATATgtttaAtcagg 192872 193429 F frr frrp5 Sigma70 192728 192733 CTGCCC 17 192751 192756 TAAAAT 192762 4.066 high homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaCTGCCCggggccaaaatggcaaaTAAAATagcctAataat 193521 194717 F dxr dxrp2 Sigma70 193434 193439 TTGAAC 20 193460 193465 GATCCT 193471 2.594 poor homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttcTTGAACgacaaaaacgccgctcagtaGATCCTtgcggAtcggc 193521 194717 F dxr dxrp3 Sigma70 193298 193303 TTGAAA 21 193325 193330 GACGAT 193335 3.663 good homology 9.83E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgTTGAAAgataaagagatcagcgaagacGACGATcgccGttctc 195677 196534 F cdsA cdsAp1 Sigma70 195528 195533 TTGCCT 20 195554 195559 GATGTT 195565 2.594 poor homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTGCCTatgccgaactttactttacaGATGTTctctgGcccga 195677 196534 F cdsA cdsAp2 Sigma70 195528 195533 TTGCCT 16 195550 195555 TACAGA 195561 3.153 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTGCCTatgccgaactttacttTACAGAtgttcTctggc 195677 196534 F cdsA cdsAp3 Sigma70 195520 195525 TTGGCA 19 195545 195550 TACTTT 195555 3.4 good homology 9.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTGGCAaattgcctatgccgaacttTACTTTacagAtgttc 211877 212266 F yaeR yaeRp3 Sigma70 211822 211827 TTGCCA 18 211846 211851 TAACGT 211858 4.428 high homology 3.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacTTGCCAgagcggcttccgggcgagTAACGTgctgttAacaaa 212331 213629 F tilS tilSp1 Sigma70 212285 212290 TTGCCC 20 212311 212316 TACTGT 212323 2.944 poor homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgcatTTGCCCggtaacgtgccgggcatTGcTACTGTaaaatcGcacca 212331 213629 F tilS tilSp2 Sigma70 212270 212275 TTGTCA 17 212293 212298 TAACGT 212304 4.456 high homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaggcTTGTCAtcgccgcatttgcccggTAACGTgccggGcattg 213678 213932 R rof rofp3 Sigma70 214135 214140 CTGACA 18 214111 214116 TATTGT 214105 3.848 good homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtgCTGACAggagggcatgtggaaaaaTATTGTgagttAatacg 214291 214836 F yaeQ yaeQp1 Sigma70 214160 214165 ATGCAA 15 214181 214186 GATAAA 214191 2.14 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtggATGCAAgtctaagcctacgaaGATAAActctGtttcg 214291 214836 F yaeQ yaeQp6 Sigma70 214160 214165 ATGCAA 17 214183 214188 TAAACT 214195 5.086 high homology 3.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtggATGCAAgtctaagcctacgaagaTAAACTctgtttCgcaag 216179 217003 R yaeF yaeFp2 Sigma70 217204 217209 ATGGAA 20 217178 217183 TATTGT 217172 2.674 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatATGGAActgatcggtattccgcacacTATTGTgctggGcgacc 216179 217003 R yaeF yaeFp3 Sigma70 217105 217110 TTAATT 18 217081 217086 GAATAT 217075 3.028 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacagTTAATTaagactggtgacatcgtcGAATATctggtGaaaca 218887 219594 R yaeB yaeBp1 Sigma70 219626 219631 CTGTAT 16 219604 219609 TAACAT 219599 2.233 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaggCTGTATgtatcggttctgcgctTAACATtacgGcgaaa 220113 220928 R metQ metQp2 Sigma70 221052 221057 ATGAAT 20 221026 221031 CATTCT 221020 1.624 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtgATGAATacggtactggtattgctggtCATTCTggtttAtttaa 220113 220928 R metQ metQp3 Sigma70 221093 221098 TTGGCT 20 221067 221072 TATAAC 221061 2.244 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagaTTGGCTatcagtatggctacatcggcTATAACgcgacGgtgat 229967 230881 R yafC yafCp1 Sigma70 230953 230958 ATGACA 20 230927 230932 TAATGA 230921 1.674 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcATGACAtatcacgcatcctgatggttTAATGAcaaatAaattc 229967 230881 R yafC yafCp2 Sigma70 231044 231049 CTCACT 19 231019 231024 TATTGT 231013 2 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttagCTCACTctttcaacgagcaattgtaTATTGTtatgtAagcaa 229967 230881 R yafC yafCp3 Sigma70 230918 230923 ATAAAT 15 230897 230902 TATTTT 230891 2.38 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacaaATAAATtcaaaatatctcttcTATTTTgcaacAggagc 229967 230881 R yafC yafCp4 Sigma70 231037 231042 TTTCAA 18 231013 231018 TATGTA 231007 2.428 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cactcTTTCAAcgagcaattgtatatTGtTATGTAagcaaGtgctt 229967 230881 R yafC yafCp5 Sigma70 231048 231053 TTAGCT 21 231021 231026 TATATT 231015 3.393 good homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggattTTAGCTcactctttcaacgagcaattgTATATTgttatGtaagc 232597 233955 R mltD mltDp1 Sigma70 234068 234073 CTGAAG 15 234047 234052 TAAGGT 234041 2.41 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaacCTGAAGagcgttttgcatggtTAAGGTcaaagAaagat 232597 233955 R mltD mltDp3 Sigma70 234056 234061 TTGCAT 19 234031 234036 TAGGTT 234025 3.24 good homology 7.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgttTTGCATggttaaggtcaaagaaagaTAGGTTctgatAaaact 232597 233955 R mltD mltDp4 Sigma70 234011 234016 TTGTCA 17 233988 233993 TATGAT 233982 5.546 high homology 2.08E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttcTTGTCAtcggctccgttcgccgtTATGATcggtcGtcttt 234027 234782 R gloB gloBp1 Sigma70 234816 234821 TTTCAT 15 234795 234800 CACACT 234789 2.17 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccggTTTCATcacaaccttccgtttCACACTgagagGtaatc 234027 234782 R gloB gloBp2 Sigma70 234977 234982 TTGATT 16 234955 234960 CAATCT 234949 2.793 poor homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgcaaTTGATTtctgcgcttaaatTGcCAATCTtaagcAgatga 234027 234782 R gloB gloBp3 Sigma70 234984 234989 TTCGCA 15 234963 234968 TAAATT 234958 3.37 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgcTTCGCAattgatttctgcgctTAAATTgccaAtctta 234027 234782 R gloB gloBp5 Sigma70 234959 234964 TTGCCA 21 234932 234937 TACATT 234926 4.533 high homology 2.28E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaaaTTGCCAatcttaagcagatgaaaaccaTACATTttagtGaacca 234816 235538 F yafS yafSp2 Sigma70 234748 234753 TTGTCA 19 234773 234778 TAAGAT 234784 4.19 high homology 3.75E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgtaaTTGTCAtcaaaggcgggaatacTGtTAAGATtcataGattac 237335 238120 F yafT yafTp1 Sigma70 237249 237254 TTATTA 19 237274 237279 TAGAGT 237285 2.49 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttgTTATTAtttaagtgaggtatataatTAGAGTccgttAtcaat 237335 238120 F yafT yafTp2 Sigma70 237273 237278 TTAGAG 18 237297 237302 TATTCT 237307 3.328 good homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tataaTTAGAGtccgttatcaatgctaaaTATTCTaatcAttatg 237335 238120 F yafT yafTp4 Sigma70 237204 237209 TTTATA 15 237225 237230 TATATT 237235 4.38 high homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTTATAttgattaaatgaatgTATATTtcaaAttgat 237335 238120 F yafT yafTp5 Sigma70 237229 237234 TTTCAA 15 237250 237255 TATTAT 237260 4.63 high homology 2.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtataTTTCAAattgattttgttTGtTATTATttaaGtgagg 237335 238120 F yafT yafTp6 Sigma70 237246 237251 TTGTTA 16 237268 237273 TATAAT 237278 5.143 high homology 4.33E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtTTGTTAttatttaagtgaggtaTATAATtagaGtccgt 240343 240816 F ivy ivyp1 Sigma70 240234 240239 TTATCA 21 240261 240266 TAAATT 240271 3.203 good homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaccTTATCAggcagttgccttagcgcagaaTAAATTgataAcaaat 240343 240816 F ivy ivyp3 Sigma70 240245 240250 TTGCCT 18 240269 240274 TAACAA 240280 3.398 good homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggcagTTGCCTtagcgcagaataaatTGaTAACAAatgctGatatt 240343 240816 F ivy ivyp4 Sigma70 240284 240289 TTGGAA 17 240307 240312 TATCGT 240319 4.936 high homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTGGAAatatctgatttgcaaatTATCGTgttatcGccagg 243543 244121 F lpcA lpcAp2 Sigma70 243354 243359 TTGTAG 19 243379 243384 CAATAT 243389 1.82 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatggTTGTAGtggatgtaaaaacatttagCAATATgtttAcaata 243543 244121 F lpcA lpcAp3 Sigma70 243340 243345 TTGTGA 20 243366 243371 TAAAAA 243377 2.394 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTGTGAtgatatggttgtagtggatgTAAAAAcatttAgcaat 243543 244121 F lpcA lpcAp4 Sigma70 243317 243322 TTACTT 21 243344 243349 GATGAT 243356 2.403 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gccccTTACTTgtaggaggtctgaccactTGtGATGATatggttGtagtg 243543 244121 F lpcA lpcAp8 Sigma70 243363 243368 ATGTAA 19 243388 243393 TACAAT 243400 3.29 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtggATGTAAaaacatttagcaatatgttTACAATataattAcaaca 243543 244121 F lpcA lpcAp9 Sigma70 243503 243508 CTGCAT 15 243524 243529 TATGCT 243535 3.31 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtacaCTGCATtttgtctattacattTATGCTgaaggAtatcc 243543 244121 F lpcA lpcAp10 Sigma70 243476 243481 TTCTCG 17 243499 243504 TACACT 243511 3.576 good homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtacTTCTCGcttttggcggtatccggTACACTgcatttTgtcta 244327 245094 F yafJ yafJp1 Sigma70 244175 244180 ATGCCT 20 244201 244206 TATCAT 244211 2.914 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgATGCCTgatgcgacgctgacgcgtctTATCATgcctAcaaat 245065 245805 R yafK yafKp1 Sigma70 245845 245850 TTGCCG 21 245818 245823 TATCAA 245812 2.763 poor homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattTTGCCGtcctggcgtgtgtaaccgtttTATCAAggaatAagcag 245065 245805 R yafK yafKp2 Sigma70 246034 246039 CTGGAT 21 246007 246012 TAAACT 246001 3.213 good homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggaCTGGATcctgatttacaaacttaccgaTAAACTtttacGatttg 245065 245805 R yafK yafKp3 Sigma70 245913 245918 TTGCGT 16 245891 245896 TAATGT 245885 3.373 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caggcTTGCGTaaaactcttttggTGaTAATGTgagccTtccaa 245065 245805 R yafK yafKp6 Sigma70 246023 246028 TTTACA 18 245999 246004 TACGAT 245993 4.148 high homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaTTTACAaacttaccgataaactttTACGATttgagAgaact 245961 246239 R yafQ yafQp2 Sigma70 246292 246297 TTGATG 20 246266 246271 GATGAT 246259 2.894 poor homology 0.00016826 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTGATGttcataaggccaaagacgccGATGATttatttGataaa 245961 246239 R yafQ yafQp3 Sigma70 246352 246357 TTGATT 18 246328 246333 TAACCA 246323 3.268 good homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgtTTGATTtacgcgagcctaatcaatTAACCAttcaAtcaat 245961 246239 R yafQ yafQp5 Sigma70 246359 246364 TTGCCG 17 246336 246341 TAATCA 246331 3.746 good homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTGCCGtttgatttacgcgagccTAATCAattaAccatt 246712 247461 F yafL yafLp2 Sigma70 246610 246615 CTGAAA 17 246633 246638 TAATAA 246645 3.426 good homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaCTGAAAtatatatgttaattttaTAATAAtggtttAttaag 246712 247461 F yafL yafLp3 Sigma70 246652 246657 TTGTTC 15 246673 246678 TACACT 246684 3.54 good homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTGTTCagaaacgatccgggaTACACTgcaacAttaaa 246712 247461 F yafL yafLp4 Sigma70 246624 246629 TTAATT 17 246647 246652 TAAGTT 246658 3.806 good homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatgTTAATTttataataatggtttatTAAGTTtgttcAgaaac 246712 247461 F yafL yafLp6 Sigma70 246606 246611 TTAACT 19 246631 246636 TATAAT 246641 4.86 high homology 6.93E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cataaTTAACTgaaatatatatgttaatttTATAATaatgGtttat 247637 248134 F yafM yafMp2 Sigma70 247556 247561 TTGCGA 15 247577 247582 TAAAAC 247589 2.15 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTGCGAgccgctttcccgataTAAAACaacctcAttgcc 247637 248134 F yafM yafMp3 Sigma70 247529 247534 TTATCA 15 247550 247555 GAATAT 247561 2.35 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtcTTATCAtgcctacgagcccgcGAATATttgcgAgccgc 247637 248134 F yafM yafMp4 Sigma70 247508 247513 CTGATG 16 247530 247535 TATCAT 247540 2.523 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgcCTGATGcgacgctggcgcgtctTATCATgcctAcgagc 247637 248134 F yafM yafMp5 Sigma70 247599 247604 TTTCCT 17 247622 247627 GAAAAA 247634 2.836 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caaccTTTCCTtttcttcttaccgtTGaGAAAAAggagtcGccatg 247637 248134 F yafM yafMp8 Sigma70 247590 247595 TTGCCA 17 247613 247618 TACCGT 247624 4.686 high homology 5.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctcaTTGCCAacctttccttttcttctTACCGTtgagaAaaagg 259612 260715 F proB proBp1 Sigma70 259525 259530 TTGCTC 20 259551 259556 GACAGT 259563 2.054 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgctTTGCTCgcagatggttggcaaccgacGACAGTcctgctAaaacg 259612 260715 F proB proBp3 Sigma70 259437 259442 TTAAAA 21 259464 259469 TAATAA 259474 3.013 poor homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTAAAAtgtggtaatttattaaatctgTAATAAaagcGtaaac 259612 260715 F proB proBp5 Sigma70 259539 259544 TTGGCA 17 259562 259567 TAAAAC 259572 3.476 good homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatggTTGGCAaccgacgacagtccTGcTAAAACgttcGtttga 259612 260715 F proB proBp6 Sigma70 259392 259397 TTTAAC 16 259414 259419 TATATT 259424 3.603 good homology 0.000103081 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttTTTAACctgagattgttaaagaTATATTacagAttaat 259612 260715 F proB proBp8 Sigma70 259404 259409 TTGTTA 19 259429 259434 TAATAT 259440 4.23 high homology 4.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgagaTTGTTAaagatatattacagattaaTAATATtcttaAaatgt 259612 260715 F proB proBp9 Sigma70 259425 259430 TTAATA 17 259448 259453 TAATTT 259459 4.266 high homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acagaTTAATAatattcttaaaatgTGgTAATTTattaaAtctgt 262552 262893 R ykfI ykfIp2 Sigma70 263000 263005 TTACCC 15 262979 262984 TAACCT 262973 2.53 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTACCCtgtaccacaacgattTAACCTgcgaaGccgac 262552 262893 R ykfI ykfIp5 Sigma70 263085 263090 CTGGAT 17 263062 263067 TATCCT 263057 3.426 good homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaagCTGGATgaaacattcccgcacttTATCCTccagAtggaa 273325 274341 R insH insHp1 Sigma70 274429 274434 TTAATA 21 274402 274407 GATACA 274396 2.123 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgcTTAATAgcgggtggggattaataatcaGATACAaaaagGgccgc 273325 274341 R insH insHp2 Sigma70 274429 274434 TTAATA 15 274408 274413 TAATCA 274402 2.63 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgcTTAATAgcgggtggggattaaTAATCAgatacAaaaag 273325 274341 R insH insHp5 Sigma70 274549 274554 TTGCAT 15 274528 274533 TATGGA 274522 3.24 good homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgtTTGCATataaccttctaaacgTATGGAcatctAaacat 274549 275952 F mmuP mmuPp3 Sigma70 274407 274412 CTGATT 16 274429 274434 TATTAA 274441 2.203 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtatCTGATTattaatccccacccgcTATTAAgcgcccGgcgcg 274549 275952 F mmuP mmuPp5 Sigma70 274475 274480 TTGCAT 19 274500 274505 TAACAA 274511 3.03 poor homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgactTTGCATtctgttaacaaacgcggtaTAACAAaccttCtttgg 274549 275952 F mmuP mmuPp7 Sigma70 274475 274480 TTGCAT 17 274498 274503 TATAAC 274509 4.136 high homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgactTTGCATtctgttaacaaacgcggTATAACaaaccTtcttt 276980 278026 R afuC afuCp1 Sigma70 278132 278137 TTCCAT 21 278105 278110 GATTAT 278100 2.893 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacggTTCCATtctgatcgtggtgatgctggcGATTATtttcAtcttt 276980 278026 R afuC afuCp2 Sigma70 278125 278130 CTGATC 17 278102 278107 TATTTT 278095 3.076 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattCTGATCgtggtgatgctggcgatTATTTTcatcttTgactg 281481 282410 F yagE yagEp1 Sigma70 281410 281415 TTACCT 15 281431 281436 CATAGT 281443 2.28 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgatTTACCTctccttgttctgcgtCATAGTatgatcGttaaa 281481 282410 F yagE yagEp3 Sigma70 281410 281415 TTACCT 20 281436 281441 TATGAT 281447 3.494 good homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgatTTACCTctccttgttctgcgtcatagTATGATcgttaAataaa 281481 282410 F yagE yagEp5 Sigma70 281410 281415 TTACCT 17 281433 281438 TAGTAT 281443 4.156 high homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgatTTACCTctccttgttctgcgtcaTAGTATgatcGttaaa 281481 282410 F yagE yagEp6 Sigma70 281444 281449 TTAAAT 17 281467 281472 TAATGT 281478 4.616 high homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgTTAAATaaacgaacgctgttctaTAATGTagaacAaaatg 281481 282410 F yagE yagEp8 Sigma70 281444 281449 TTAAAT 15 281465 281470 TATAAT 281476 5.18 high homology 5.90E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgTTAAATaaacgaacgctgttcTATAATgtagaAcaaaa 284619 286001 F yagG yagGp1 Sigma70 284572 284577 TTAACA 21 284599 284604 TACATA 284610 2.323 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctccaTTAACAcgatgttgtaattcggcacacTACATAagggtGtaatt 284619 286001 F yagG yagGp3 Sigma70 284444 284449 TTGTTT 16 284466 284471 TAAACA 284476 3.063 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttgTTGTTTttgaaatttattaattTAAACAattaGttgag 284619 286001 F yagG yagGp5 Sigma70 284397 284402 TTTAAG 17 284420 284425 GAATAT 284431 3.486 good homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTTAAGagataaaaccgtctgcgGAATATttcccGcagac 284619 286001 F yagG yagGp6 Sigma70 284464 284469 TTTAAA 15 284485 284490 TATCGT 284495 3.86 good homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTTAAAcaattagttgagataTATCGTtggcGtcaca 284619 286001 F yagG yagGp7 Sigma70 284539 284544 TTGCTG 18 284563 284568 TACACT 284574 4.508 high homology 6.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaccaTTGCTGgttaattgaatagctcatTACACTccattAacacg 287628 288386 R yagI yagIp1 Sigma70 288444 288449 TTGATT 17 288421 288426 TACGTT 288416 4.556 high homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTGATTtttcatcccgaaaaaggTACGTTttcgCcttaa 289873 290376 R insB insBp2 Sigma70 290425 290430 TTCTCA 15 290404 290409 GAAAAT 290398 2.83 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTCTCAacccggtacgcaccaGAAAATcattgAtatgg 289873 290376 R insB insBp3 Sigma70 290613 290618 CTGCCA 16 290591 290596 TATGAT 290586 3.453 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgCTGCCAacttactgatttagtgTATGATggtgTttttg 291546 292172 R yagK yagKp1 Sigma70 292329 292334 TTACTA 20 292303 292308 TAGTAA 292298 1.434 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactcTTACTAcctgtattcaccagtaagagTAGTAAtcagAtcagt 291546 292172 R yagK yagKp2 Sigma70 292222 292227 ATGGCA 16 292200 292205 TATAGA 292194 2.073 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cctgtATGGCAtccctgtacggtcTGcTATAGAccgtaGgacca 291546 292172 R yagK yagKp3 Sigma70 292410 292415 TTAACA 18 292386 292391 TACCTT 292379 3.018 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTAACAgccatcacaggctggggcTACCTTcgtctcAaattt 291546 292172 R yagK yagKp5 Sigma70 292377 292382 CTCAAA 17 292354 292359 TATTAT 292348 3.906 good homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgtCTCAAAtttagatgttggataggTATTATataatGgcatt 291546 292172 R yagK yagKp6 Sigma70 292370 292375 TTAGAT 15 292349 292354 TATAAT 292342 4.41 high homology 1.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatTTAGATgttggataggtattaTATAATggcattGtgtac 292444 293142 R yagL yagLp1 Sigma70 293230 293235 TTCCAA 21 293203 293208 CATCAT 293197 1.843 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatgtTTCCAAccgtgttaatgtaccggaTGaCATCATtataaAcccat 292444 293142 R yagL yagLp2 Sigma70 293316 293321 ATGCCT 21 293289 293294 GATATT 293284 2.313 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttATGCCTtatccggttgtttgttggattGATATTtaccAtgtca 292444 293142 R yagL yagLp4 Sigma70 293219 293224 TTAATG 16 293197 293202 TATAAA 293191 2.753 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgTTAATGtaccggatgacatcatTATAAAcccatActcac 292444 293142 R yagL yagLp7 Sigma70 293284 293289 TTACCA 18 293260 293265 TATGCT 293255 4.208 high homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTACCAtgtcaatgaaatggtggtTATGCTgccaGtgctc 294363 294803 R yagN yagNp1 Sigma70 295007 295012 TTAGAT 20 294981 294986 GAAAAT 294976 2.414 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccgTTAGATctgttacgaaaatggcacgaGAAAATtgagAcatgg 294363 294803 R yagN yagNp2 Sigma70 294874 294879 TTGATC 16 294852 294857 TATCGT 294846 3.473 good homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactaTTGATCaagatagattttcatgTATCGTaatacAcagtt 294363 294803 R yagN yagNp3 Sigma70 294918 294923 TTGATT 21 294891 294896 CAAAAT 294884 3.583 good homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTGATTccattaaaaatcaacatattaCAAAATatcatcAactat 294363 294803 R yagN yagNp5 Sigma70 294918 294923 TTGATT 19 294893 294898 TACAAA 294887 3.71 good homology 5.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTGATTccattaaaaatcaacatatTACAAAatatcAtcaac 294363 294803 R yagN yagNp8 Sigma70 294909 294914 TTAAAA 17 294886 294891 TATCAT 294880 5.156 high homology 5.22E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccaTTAAAAatcaacatattacaaaaTATCATcaactAttgat 294920 296320 R intF intFp1 Sigma70 296478 296483 TTTAAT 19 296453 296458 GAACCT 296448 2.27 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgatTTTAATggtgccgataataggagtcGAACCTacgaCcttcg 294920 296320 R intF intFp2 Sigma70 296391 296396 ATCAAA 16 296369 296374 TATAAA 296363 2.293 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaATCAAAacaacatactttatatTATAAAacaccAagtta 294920 296320 R intF intFp3 Sigma70 296503 296508 TTTAAA 16 296481 296486 GATTTT 296476 2.743 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgtaTTTAAAtatggggtaactctttGATTTTaatgGtgccg 294920 296320 R intF intFp4 Sigma70 296395 296400 ATCAAT 15 296374 296379 TATATT 296368 2.86 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaATCAATcaaaacaacatacttTATATTataaaAcacca 294920 296320 R intF intFp6 Sigma70 296395 296400 ATCAAT 17 296372 296377 TATTAT 296366 3.926 good homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaATCAATcaaaacaacatactttaTATTATaaaacAccaag 296994 297950 R paoD paoDp3 Sigma70 297999 298004 ATCACT 17 297976 297981 TAAGCT 297970 3.086 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcccATCACTctggataagctgctcgaTAAGCTgccggAtgtgg 296994 297950 R paoD paoDp4 Sigma70 298135 298140 TTTCCT 17 298112 298117 TATCCT 298106 4.476 high homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgatTTTCCTggatgataccgaccccaTATCCTccccgAtgaag 302215 302829 F yagU yagUp1 Sigma70 302043 302048 CTGCAA 19 302068 302073 TAAAAA 302079 2.62 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccCTGCAAatctctgtcacttctaataTAAAAAtagggAgaaat 302215 302829 F yagU yagUp2 Sigma70 302067 302072 ATAAAA 21 302094 302099 TATATT 302105 3.003 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaatATAAAAatagggagaaatgatggagctTATATTcattgGcgatt 302215 302829 F yagU yagUp4 Sigma70 302122 302127 TTGTTA 20 302148 302153 TACATT 302160 3.384 good homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctatcTTGTTAtacaaaacaatacagttcttTACATTtgccttGtttta 302215 302829 F yagU yagUp5 Sigma70 302102 302107 TTGGCG 18 302126 302131 TATACA 302137 3.518 good homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attcaTTGGCGattaggaaactatctTGtTATACAaaacaAtacag 302215 302829 F yagU yagUp6 Sigma70 302043 302048 CTGCAA 17 302066 302071 TATAAA 302077 3.976 good homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccCTGCAAatctctgtcacttctaaTATAAAaatagGgagaa 302215 302829 F yagU yagUp7 Sigma70 302165 302170 ATGAAT 17 302188 302193 TAACAT 302198 4.326 high homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttATGAATactcctgaagaggtgtaTAACATaatgGtacaa 303077 303406 R ykgJ ykgJp1 Sigma70 303455 303460 TTACAT 21 303428 303433 TACGAT 303422 3.283 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttcTTACATacgatgtaccgctgttctcttTACGATttttaGctgta 303719 304429 R yagV yagVp1 Sigma70 304652 304657 TTACCC 20 304626 304631 TACGAT 304620 2.124 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTACCCgcaacggagctacaaaaaccTACGATgccggGtgcga 303719 304429 R yagV yagVp2 Sigma70 304661 304666 TTTCCT 19 304636 304641 TACAAA 304630 2.63 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacacTTTCCTttattacccgcaacggagcTACAAAaacctAcgatg 309308 309895 R matB matBp1 Sigma70 309972 309977 TTCAGT 21 309945 309950 TAAAAA 309940 2.223 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttggTTCAGTaaactccaggcaagttagtttTAAAAAatgaCtcact 309308 309895 R matB matBp2 Sigma70 309992 309997 CTCAAA 19 309967 309972 TAAACT 309962 2.9 poor homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaCTCAAAaatatataagttggttcagTAAACTccagGcaagt 309308 309895 R matB matBp4 Sigma70 310078 310083 ATGCAA 21 310051 310056 GAAAAT 310046 3.103 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaATGCAAcctaaatcgattgccagaattGAAAATtgtaGtgtga 309308 309895 R matB matBp5 Sigma70 310053 310058 TTGAAA 20 310027 310032 TATACC 310021 3.104 poor homology 1.20E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTGAAAattgtagtgtgaagacagtgTATACCcatcgGcgtaa 309970 310560 R matA matAp2 Sigma70 310648 310653 TTAACC 19 310623 310628 TATCTT 310618 2.29 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgtTTAACCtttattgatatgtactacgTATCTTatttActtcc 309970 310560 R matA matAp3 Sigma70 310642 310647 TTTATT 18 310618 310623 TATTTA 310612 2.468 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaccTTTATTgatatgtactacgtatctTATTTActtccGgttta 309970 310560 R matA matAp6 Sigma70 310619 310624 TTATTT 17 310596 310601 GAAACT 310591 3.116 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatcTTATTTacttccggtttactaagGAAACTgaatGcacct 309970 310560 R matA matAp7 Sigma70 310738 310743 TTGAAT 20 310712 310717 GACACT 310706 3.734 good homology 1.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTGAATtccttttccgttcacatattGACACTcatcgGgaaaa 309970 310560 R matA matAp8 Sigma70 310794 310799 TTTTCT 17 310771 310776 TATTTT 310765 3.806 good homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtctTTTTCTtcttatcaaaaaagcaaTATTTTcagttTttcta 309970 310560 R matA matAp9 Sigma70 310685 310690 TTTAAG 16 310663 310668 TAAACT 310656 4.053 high homology 3.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTTAAGcccaatcgaaaataatTAAACTtaatctCgttta 309970 310560 R matA matAp10 Sigma70 310714 310719 TTGACA 19 310689 310694 TAAATT 310684 5.09 high homology 3.65E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acataTTGACActcatcgggaaaaaaaacaTAAATTtaagCccaat 311336 311563 F ykgL ykgLp2 Sigma70 311261 311266 TTCCTG 15 311282 311287 TATGTT 311294 2.33 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gactgTTCCTGtggcgtaaacgttttTATGTTagtaccAacaga 311336 311563 F ykgL ykgLp3 Sigma70 311286 311291 TTAGTA 19 311311 311316 TATCAT 311321 3.01 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatgTTAGTAccaacagatttaccacattTATCATcttaAcagtt 311336 311563 F ykgL ykgLp4 Sigma70 311184 311189 CTGCAT 18 311208 311213 TACTCT 311219 3.148 good homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggcaCTGCATtcagttatctgtgcgcgtTACTCTaactgGcactc 311598 311738 R ykgO ykgOp1 Sigma70 311854 311859 ATGTCT 20 311828 311833 TATACA 311822 1.804 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattgATGTCTcttctaaatcgcacccgttcTATACAgggaaGctgag 311598 311738 R ykgO ykgOp2 Sigma70 311941 311946 TTGATG 19 311916 311921 GACTAT 311911 2.76 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtgTTGATGagtactttaaaatcggctcGACTATcaaaAcagac 314515 314814 F insE insEp1 Sigma70 314335 314340 TTGGCG 20 314361 314366 TATTAT 314371 3.834 good homology 4.68E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagcTTGGCGcaagcctgatgtatgaacagTATTATggcgAtgaag 316950 317543 R ykgB ykgBp1 Sigma70 317613 317618 CTGGAA 19 317588 317593 GATAAT 317582 2.61 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcCTGGAAagtcacatcgatgcgaattGATAATaattcAaccgc 316950 317543 R ykgB ykgBp2 Sigma70 317580 317585 TTCAAC 16 317558 317563 TATAAA 317552 2.823 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTCAACcgcaacagcagtattgTATAAAtaaggAtgttc 316950 317543 R ykgB ykgBp4 Sigma70 317653 317658 ATACCA 20 317627 317632 TATAAT 317621 3.064 poor homology 4.15E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaggATACCAttgctgatatagccagaaaaTATAATgcttcAtcctg 316950 317543 R ykgB ykgBp7 Sigma70 317741 317746 ATGGCA 20 317715 317720 TAAAAT 317708 3.404 good homology 6.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgttATGGCAttttccaccaatgcagaTGaTAAAATaattctGaaaca 316950 317543 R ykgB ykgBp9 Sigma70 317782 317787 TTAAAA 21 317755 317760 TATTAT 317749 4.683 high homology 2.04E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgtTTAAAAaatctgttttatttgcaacacTATTATctggcGttatg 316950 317543 R ykgB ykgBp10 Sigma70 317590 317595 TTGATA 21 317563 317568 TATTGT 317558 4.933 high homology 1.20E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgaaTTGATAataattcaaccgcaacagcagTATTGTataaAtaagg 317900 319225 R ykgC ykgCp2 Sigma70 319279 319284 TTGCTC 15 319258 319263 CATGAT 319252 2.19 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttatTTGCTCttttgcgtctatagtCATGATgtcaaAtgaac 317900 319225 R ykgC ykgCp3 Sigma70 319357 319362 TTGTTT 15 319336 319341 GAAAAA 319331 2.21 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGTTTtgtgattctgattaaGAAAAAgaaaAtatca 317900 319225 R ykgC ykgCp4 Sigma70 319425 319430 TTGATT 20 319399 319404 TAAATA 319394 3.024 poor homology 7.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtttTTGATTacaaacaccaacaatcttagTAAATAactaAtctaa 317900 319225 R ykgC ykgCp5 Sigma70 319286 319291 ATGTTA 16 319264 319269 TATAGT 319259 3.133 poor homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaATGTTAtttgctcttttgcgtcTATAGTcatgAtgtca 317900 319225 R ykgC ykgCp6 Sigma70 319357 319362 TTGTTT 21 319330 319335 GAAAAT 319324 3.463 good homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGTTTtgtgattctgattaagaaaaaGAAAATatcagAcgata 317900 319225 R ykgC ykgCp7 Sigma70 319425 319430 TTGATT 17 319402 319407 TAGTAA 319395 3.956 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtttTTGATTacaaacaccaacaatctTAGTAAataactAatcta 319451 320305 F ykgD ykgDp1 Sigma70 319368 319373 ATGATT 16 319390 319395 TAGATT 319400 2.643 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcATGATTaactatttgatggtatTAGATTagttAtttac 319451 320305 F ykgD ykgDp2 Sigma70 319380 319385 TTGATG 20 319406 319411 TAAGAT 319417 3.824 good homology 5.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actatTTGATGgtattagattagttatttacTAAGATtgttgGtgttt 319451 320305 F ykgD ykgDp3 Sigma70 319305 319310 TTGATA 18 319329 319334 TATTTT 319340 5.058 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aacgcTTGATAttttgtcttatcgtcTGaTATTTTcttttTcttaa 320832 321551 F ykgE ykgEp1 Sigma70 320729 320734 TTGCTA 19 320754 320759 CATATT 320765 2.9 poor homology 0.00012465 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgTTGCTAgccaattaaaaaagaacgcCATATTtattgAtgatt 320832 321551 F ykgE ykgEp2 Sigma70 320688 320693 ATGAAA 15 320709 320714 TACAAA 320720 3 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttggATGAAAgattatcatttgtcaTACAAAtgaggGgtggt 320832 321551 F ykgE ykgEp3 Sigma70 320729 320734 TTGCTA 21 320756 320761 TATTTA 320767 3.023 poor homology 0.000122182 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgTTGCTAgccaattaaaaaagaacgccaTATTTAttgatGattga 320832 321551 F ykgE ykgEp6 Sigma70 320740 320745 TTAAAA 18 320764 320769 GATGAT 320775 3.568 good homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccaaTTAAAAaagaacgccatatttattGATGATtgatcCcccgg 320832 321551 F ykgE ykgEp7 Sigma70 320703 320708 TTGTCA 16 320725 320730 TATGTT 320735 3.753 good homology 7.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atcatTTGTCAtacaaatgaggggTGgTATGTTgctaGccaat 320832 321551 F ykgE ykgEp8 Sigma70 320671 320676 TTGCAT 20 320697 320702 TATCAT 320708 4.454 high homology 1.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttaTTGCATttgacgtttggatgaaagatTATCATttgtcAtacaa 320832 321551 F ykgE ykgEp9 Sigma70 320671 320676 TTGCAT 17 320694 320699 GATTAT 320705 5.056 high homology 3.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttaTTGCATttgacgtttggatgaaaGATTATcatttGtcata 323920 324588 R ykgH ykgHp1 Sigma70 324657 324662 TTTAAC 18 324633 324638 GACTAT 324628 2.358 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTTAACccgaacattcctgatacaGACTATtaatAcaacc 323920 324588 R ykgH ykgHp2 Sigma70 324657 324662 TTTAAC 21 324630 324635 TATTAA 324625 2.483 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTTAACccgaacattcctgatacagacTATTAAtacaAcctta 323920 324588 R ykgH ykgHp3 Sigma70 324625 324630 ATACAA 19 324600 324605 TATTCT 324595 2.65 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaATACAAccttatctgcgacagatttTATTCTctggAtatat 324801 326471 R betA betAp1 Sigma70 326527 326532 GTGAAG 20 326501 326506 TAAATT 326496 1.654 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccagGTGAAGtccatccaggttgagatggcTAAATTccagTccata 324801 326471 R betA betAp2 Sigma70 326511 326516 TTGAGA 16 326489 326494 CATATT 326482 2.503 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaggTTGAGAtggctaaattccagtcCATATTctaaccAggagg 324801 326471 R betA betAp7 Sigma70 326511 326516 TTGAGA 18 326487 326492 TATTCT 326481 4.898 high homology 2.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaggTTGAGAtggctaaattccagtccaTATTCTaaccaGgaggt 332725 333657 R yahB yahBp2 Sigma70 333830 333835 TTTCTG 19 333805 333810 TAATTT 333800 2.25 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgggtTTTCTGgcgggtaactgcgtgggggTAATTTcagaAtatgg 332725 333657 R yahB yahBp5 Sigma70 333747 333752 TTAAAA 20 333721 333726 TATCTT 333715 3.044 poor homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtaTTAAAAgttattcaaaaatgattatcTATCTTtaaccGatacc 332725 333657 R yahB yahBp6 Sigma70 333726 333731 TTATCT 18 333702 333707 TACAGT 333697 3.248 good homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTATCTatctttaaccgatacctcTACAGTcataGctgga 333749 334246 R yahC yahCp1 Sigma70 334461 334466 TTGAGA 16 334439 334444 GATAAA 334434 2.653 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaTTGAGAatagcaacgataatctGATAAAagaaCccgct 333749 334246 R yahC yahCp2 Sigma70 334471 334476 TTTCGA 18 334447 334452 GATAAT 334441 3.138 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgtTTTCGAtgaattgagaatagcaacGATAATctgatAaaaga 333749 334246 R yahC yahCp3 Sigma70 334322 334327 TTCACT 21 334295 334300 TAGTCT 334290 3.193 good homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accctTTCACTcaatcaggttttatttctctaTAGTCTgcacAtgtaa 333749 334246 R yahC yahCp4 Sigma70 334466 334471 ATGAAT 15 334445 334450 TAATCT 334439 3.79 good homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcgATGAATtgagaatagcaacgaTAATCTgataaAagaac 333749 334246 R yahC yahCp5 Sigma70 334322 334327 TTCACT 19 334297 334302 TATAGT 334292 4.22 high homology 3.10E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accctTTCACTcaatcaggttttatttctcTATAGTctgcAcatgt 334504 335109 F yahD yahDp1 Sigma70 334420 334425 TTAAAT 20 334446 334451 GATTAT 334456 2.914 poor homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgaaTTAAATttaagcgggttcttttatcaGATTATcgttGctatt 334504 335109 F yahD yahDp3 Sigma70 334425 334430 TTTAAG 18 334449 334454 TATCGT 334459 3.328 good homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaaaTTTAAGcgggttcttttatcagatTATCGTtgctAttctc 334504 335109 F yahD yahDp5 Sigma70 334435 334440 TTCTTT 17 334458 334463 TATTCT 334470 3.996 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgggTTCTTTtatcagattatcgtTGcTATTCTcaattcAtcgaa 342108 343157 F yahK yahKp1 Sigma70 342004 342009 CTGGAT 20 342030 342035 TATATT 342041 2.574 poor homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggggCTGGATcgggtggtttaaatattggcTATATTcaatgGacgcg 342108 343157 F yahK yahKp2 Sigma70 342057 342062 ATGACA 17 342080 342085 TACACA 342091 3.546 good homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcgATGACAtatcaggcgttgccaaaTACACAtagctAatcag 343400 344215 F yahL yahLp2 Sigma70 343358 343363 TTTATT 18 343382 343387 TATTTA 343393 2.468 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagcTTTATTatctgcgacgtttattttTATTTAagagaGatcgc 343400 344215 F yahL yahLp3 Sigma70 343182 343187 TTAACA 20 343208 343213 TAACTT 343218 2.664 poor homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTAACAtattaacttcgctctccactTAACTTtttaGttaag 343400 344215 F yahL yahLp4 Sigma70 343338 343343 GTGCCT 16 343360 343365 TATTAT 343371 2.673 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataGTGCCTggtttaatcagagcttTATTATctgcgAcgttt 343400 344215 F yahL yahLp6 Sigma70 343275 343280 TTGTTA 16 343297 343302 TACACA 343309 2.903 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaaaTTGTTAaattaacgccctccagTACACAatacttCacacg 343400 344215 F yahL yahLp7 Sigma70 343275 343280 TTGTTA 18 343299 343304 CACAAT 343310 2.918 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaaaTTGTTAaattaacgccctccagtaCACAATacttcAcacgt 343400 344215 F yahL yahLp9 Sigma70 343163 343168 TTAATA 17 343186 343191 CATATT 343198 3.146 good homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTAATAaataccctgtggtttaaCATATTaacttcGctctc 343400 344215 F yahL yahLp10 Sigma70 343212 343217 TTTTTA 16 343234 343239 TAATAT 343244 3.283 good homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaacTTTTTAgttaaggagagcgaaaTAATATcaaaGtagca 343400 344215 F yahL yahLp11 Sigma70 343307 343312 TTCACA 21 343334 343339 GATAGT 343345 3.293 good homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatacTTCACAcgttagttatgagcgatttctGATAGTgcctgGtttaa 344628 344873 F yahM yahMp1 Sigma70 344427 344432 TTGTGA 19 344452 344457 TATGAA 344462 2.13 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgttTTGTGAatgtgttggttgacattcaTATGAAaaaaAtcata 344628 344873 F yahM yahMp2 Sigma70 344522 344527 CTGACA 21 344549 344554 TATCAA 344560 2.143 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caagcCTGACAgaaaatatgctgtaaggctcaTATCAAaaaccGccatt 344628 344873 F yahM yahMp3 Sigma70 344509 344514 ATCGCA 18 344533 344538 TATGCT 344544 2.208 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgcATCGCActcaagcctgacagaaaaTATGCTgtaagGctcat 344628 344873 F yahM yahMp4 Sigma70 344442 344447 TTGACA 16 344464 344469 CATAAT 344476 4.263 high homology 1.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttggTTGACAttcatatgaaaaaaatCATAATtccatcAtgttt 344890 345561 R yahN yahNp1 Sigma70 345707 345712 TTCATA 21 345680 345685 CACACT 345675 2.033 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTCATAttacggctccagagttgttatCACACTatcaCccacc 344890 345561 R yahN yahNp2 Sigma70 345687 345692 TTGTTA 19 345662 345667 CATTAT 345655 2.56 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagagTTGTTAtcacactatcacccacccaCATTATtgggttGattaa 344890 345561 R yahN yahNp4 Sigma70 345595 345600 TTGTGA 17 345572 345577 TATTTT 345566 4.046 high homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acactTTGTGAtctctctcgcacccgatTATTTTtggtaGaaata 360473 361084 R lacA lacAp1 Sigma70 361309 361314 TTTATG 21 361282 361287 TATGAA 361275 2.073 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTTATGtctgtactggcgggcaatatgTATGAAagcatcGgtttc 375996 376535 F yaiL yaiLp2 Sigma70 375824 375829 TTGTTG 16 375846 375851 TATTTT 375857 3.033 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTGTTGctgggttggcggtgttTATTTTgatgaGccgga 375996 376535 F yaiL yaiLp4 Sigma70 375948 375953 TTTACA 18 375972 375977 TATTCA 375982 3.468 good homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTTACAggtatactcgctaaaaatTATTCAgcggGtttgg 376759 377592 R frmB frmBp1 Sigma70 377831 377836 TTCCCA 16 377809 377814 GAAGAT 377803 2.423 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtcgTTCCCAgttaccgggcatggttGAAGATgcgatGaaagg 376759 377592 R frmB frmBp2 Sigma70 377811 377816 TTGAAG 16 377789 377794 TATCGA 377783 2.563 poor homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence catggTTGAAGatgcgatgaaaggTGaTATCGAtctggAaccgt 376759 377592 R frmB frmBp3 Sigma70 377772 377777 TTGTCA 20 377746 377751 GAAATT 377741 2.744 poor homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgtTTGTCAcgcataccatgagcctggatGAAATTaatgAcgcct 379293 380066 R yaiO yaiOp1 Sigma70 380145 380150 TTGGCC 19 380120 380125 TAATTT 380115 2.85 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaacTTGGCCcgcgcgtgattgtagaacgTAATTTacctAccgga 379293 380066 R yaiO yaiOp2 Sigma70 380207 380212 TTCACG 18 380183 380188 TATTTT 380177 3.338 good homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcgTTCACGccttggcgtacaagttatTATTTTgcctgGgcgaa 379293 380066 R yaiO yaiOp4 Sigma70 380207 380212 TTCACG 15 380186 380191 TATTAT 380181 3.9 good homology 8.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcgTTCACGccttggcgtacaagtTATTATtttgCctggg 380575 380940 F insC insCp1 Sigma70 380496 380501 CTGAAT 21 380523 380528 TAAATA 380533 2.013 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccccCTGAATctccagacaaccaatatcactTAAATAagtgAtagtc 380575 380940 F insC insCp2 Sigma70 380522 380527 TTAAAT 18 380546 380551 TAGTTT 380556 3.138 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcacTTAAATaagtgatagtcttaatacTAGTTTttagActagt 380575 380940 F insC insCp3 Sigma70 380343 380348 TTGCAA 15 380364 380369 TAAAAC 380375 3.21 good homology 5.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTGCAActaccgagtcggcaaTAAAACattgcGgacca 380575 380940 F insC insCp4 Sigma70 380530 380535 GTGATA 17 380553 380558 TAGACT 380563 3.376 good homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaGTGATAgtcttaatactagttttTAGACTagtcAttgga 380575 380940 F insC insCp6 Sigma70 380385 380390 TTGCTT 21 380412 380417 TAATCT 380423 4.493 high homology 2.30E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTGCTTccgcttcaataaccgcattttTAATCTcggtgGcaaaa 381963 383159 R yaiP yaiPp1 Sigma70 383358 383363 TTTATG 20 383332 383337 TAAAGA 383326 1.694 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTTATGcctcaggtttttgaatccgtTAAAGAagaatAtttca 381963 383159 R yaiP yaiPp3 Sigma70 383319 383324 TTCACA 16 383297 383302 TAAAAA 383291 3.363 good homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTCACAgtcaaacttgctgcatTAAAAAaacatAaaagc 383283 383840 R yaiS yaiSp1 Sigma70 383926 383931 TTTATA 21 383899 383904 GAGATT 383893 2.103 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacaTTTATAaattaacatctggctgcgccaGAGATTacgtcTctgag 383283 383840 R yaiS yaiSp6 Sigma70 383951 383956 TTTCAG 21 383924 383929 TATAAA 383918 2.903 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTTCAGttattagcaacatttaacattTATAAAttaacAtctgg 383283 383840 R yaiS yaiSp7 Sigma70 383942 383947 TTAGCA 19 383917 383922 TAACAT 383910 2.95 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttaTTAGCAacatttaacatttataaatTAACATctggctGcgcca 383283 383840 R yaiS yaiSp10 Sigma70 383875 383880 TTGTGC 15 383854 383859 TAAAAT 383848 3.35 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcgTTGTGCttgtagtataataaaTAAAATggagtGtcatt 383283 383840 R yaiS yaiSp11 Sigma70 383945 383950 TTATTA 17 383922 383927 TAAATT 383917 3.956 good homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcagTTATTAgcaacatttaacatttaTAAATTaacaTctggc 383283 383840 R yaiS yaiSp12 Sigma70 383956 383961 TTGCTT 19 383931 383936 TAACAT 383925 4.1 high homology 3.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcccTTGCTTttcagttattagcaacattTAACATttataAattaa 383283 383840 R yaiS yaiSp14 Sigma70 384084 384089 TTGACA 18 384060 384065 TACAAT 384054 5.978 high homology 1.52E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTGACAaactaaatcacatctaaaTACAATgtataAaacaa 387977 388951 R hemB hemBp1 Sigma70 389091 389096 ATAAAA 16 389069 389074 TAAAAA 389064 2.083 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaatATAAAAttattgctgtttctatTAAAAAgatgTcctgg 387977 388951 R hemB hemBp2 Sigma70 389011 389016 GTAAAA 20 388985 388990 TATACT 388979 2.174 poor homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttcGTAAAAcatccctaccctgcttcaggTATACTatgccCctcga 387977 388951 R hemB hemBp3 Sigma70 389113 389118 ATTAAA 15 389092 389097 TATAAA 389085 2.64 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaagATTAAAaatattttcagtgaaTATAAAattattGctgtt 387977 388951 R hemB hemBp4 Sigma70 389034 389039 TTGTCA 18 389010 389015 TAAAAC 389003 2.768 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttcTTGTCAacatcgcgacaactttcgTAAAACatccctAccctg 387977 388951 R hemB hemBp7 Sigma70 389112 389117 TTAAAA 16 389090 389095 TAAAAT 389085 4.923 high homology 1.06E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaTTAAAAatattttcagtgaataTAAAATtattGctgtt 390963 391829 R insF insFp1 Sigma70 392071 392076 CTGAAT 16 392049 392054 GAAGCT 392043 1.923 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgcCTGAATttcgcagtgaagccctGAAGCTtgctgAacgca 390963 391829 R insF insFp2 Sigma70 391892 391897 CTGGCA 20 391866 391871 TATCCT 391860 2.224 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccagCTGGCAgaacgggatgaagagctggcTATCCTccaaaAggccg 393730 394353 F yaiV yaiVp3 Sigma70 393648 393653 TTCACT 15 393669 393674 TAATTT 393680 3.37 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tattcTTCACTccgaagaaatacTGgTAATTTaatctAaataa 393730 394353 F yaiV yaiVp4 Sigma70 393648 393653 TTCACT 20 393674 393679 TAATCT 393685 3.474 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTCACTccgaagaaatactggtaattTAATCTaaataAtgccc 398249 398557 R yaiY yaiYp1 Sigma70 398653 398658 TTACCA 15 398632 398637 CAATCT 398626 1.98 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcaatTTACCAtgattctgatatTGaCAATCTaaatgAcctgt 398249 398557 R yaiY yaiYp2 Sigma70 398741 398746 TTCGTA 19 398716 398721 TAAGGT 398711 2.33 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acattTTCGTAattgttaataaatttaactTAAGGTtgccAttttg 398249 398557 R yaiY yaiYp3 Sigma70 398667 398672 TTCCCA 21 398640 398645 GATATT 398635 2.773 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTCCCAacatcaatttaccatgattctGATATTgacaAtctaa 398249 398557 R yaiY yaiYp4 Sigma70 398667 398672 TTCCCA 15 398646 398651 GATTCT 398639 2.94 poor homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTCCCAacatcaatttaccatGATTCTgatattGacaat 398249 398557 R yaiY yaiYp5 Sigma70 398711 398716 TTGCCA 16 398689 398694 GAAGAT 398684 3.613 good homology 5.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTGCCAttttgtgactcacaacGAAGATtcacGcttcg 398249 398557 R yaiY yaiYp6 Sigma70 398801 398806 TTAACG 18 398777 398782 TATTCT 398771 3.998 good homology 9.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctccgTTAACGaaaaacaacatccttgcaTATTCTgcaacAaccgt 398817 399029 F yaiZ yaiZp1 Sigma70 398751 398756 TTGTCT 19 398776 398781 CAGAAT 398787 2.21 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGTCTacaccacagacggttgttgCAGAATatgcaAggatg 398817 399029 F yaiZ yaiZp2 Sigma70 398609 398614 ATGGCA 16 398631 398636 TAGATT 398641 2.303 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcttATGGCAagtctgacaggtcattTAGATTgtcaAtatca 398817 399029 F yaiZ yaiZp3 Sigma70 398719 398724 TTAAGT 19 398744 398749 GAAAAT 398754 2.38 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaccTTAAGTtaaatttattaacaattacGAAAATgttgTctaca 398817 399029 F yaiZ yaiZp4 Sigma70 398696 398701 TTGTGA 18 398720 398725 TAAGTT 398732 2.888 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcgTTGTGAgtcacaaaatggcaacctTAAGTTaaatttAttaac 398817 399029 F yaiZ yaiZp5 Sigma70 398751 398756 TTGTCT 21 398778 398783 GAATAT 398789 3.123 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGTCTacaccacagacggttgttgcaGAATATgcaagGatgtt 398817 399029 F yaiZ yaiZp6 Sigma70 398635 398640 TTGTCA 15 398656 398661 TAAATT 398668 4.45 high homology 3.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttagaTTGTCAatatcagaatcaTGgTAAATTgatgttGggaat 399053 400147 R ddlA ddlAp2 Sigma70 400281 400286 TTGAGA 20 400255 400260 TACGTT 400250 2.684 poor homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctTTGAGAtaacgcactttcttcaccagTACGTTgcacGctttg 404988 405446 F yaiI yaiIp1 Sigma70 404826 404831 TTCCCA 15 404847 404852 TAAAAC 404858 1.93 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcttTTCCCAtattgccgcagccaaTAAAACcgattTtcttt 404988 405446 F yaiI yaiIp2 Sigma70 404862 404867 TTTCCA 18 404886 404891 GAAATT 404896 3.028 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttctTTTCCAttgcctcactcctgccgtGAAATTcattGttttg 404988 405446 F yaiI yaiIp6 Sigma70 404899 404904 TTGATA 16 404921 404926 TAAACA 404932 4.133 high homology 3.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTGATAatcgctggcagaagcaTAAACAgaactAtgccg 408332 409243 R rdgC rdgCp1 Sigma70 409376 409381 ATACCT 19 409351 409356 TATTTT 409345 1.77 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgATACCTatacgcacggtactctcctTATTTTtttcaAtatca 408332 409243 R rdgC rdgCp4 Sigma70 409304 409309 ATGCAA 17 409281 409286 TATCAT 409276 4.526 high homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaATGCAAggccgccgacaattcgtTATCATgcccGctaaa 409368 410276 F mak makp1 Sigma70 409242 409247 ATGATA 19 409267 409272 TAAATT 409278 3.42 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagcATGATAatttccacggccttgtcgtTAAATTtagcgGgcatg 409368 410276 F mak makp2 Sigma70 409222 409227 TTAAAT 18 409246 409251 TAATTT 409257 3.768 good homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaccaTTAAATttttgaaccacagcaTGaTAATTTccacgGccttg 409368 410276 F mak makp3 Sigma70 409222 409227 TTAAAT 16 409244 409249 GATAAT 409254 3.793 good homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTAAATttttgaaccacagcatGATAATttccAcggcc 409368 410276 F mak makp4 Sigma70 409309 409314 TTGCCA 17 409332 409337 TACGCT 409342 5.276 high homology 2.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTGCCAatccggttgtccgtctcTACGCTattgAtattg 423561 424142 R acpH acpHp1 Sigma70 424225 424230 CTGACT 21 424198 424203 TAGTCT 424191 2.713 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacaCTGACTcagactaaaataagaggcgggTAGTCTagtgccGgggcg 423561 424142 R acpH acpHp3 Sigma70 424256 424261 TTCAAA 21 424229 424234 GACACT 424223 3.093 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcaaTTCAAAggagaaatcggtaacgcgcatGACACTgactcAgacta 423561 424142 R acpH acpHp4 Sigma70 424381 424386 TTGAGC 17 424358 424363 GAAAGT 424352 3.276 good homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggggTTGAGCttatcaagtaaatcggtGAAAGTaccgtGcgtca 423561 424142 R acpH acpHp6 Sigma70 424174 424179 CTGCAA 18 424150 424155 TAGAAT 424143 3.838 good homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctccCTGCAAcctttacccccttttggaTAGAATataatcGatgaa 429829 430176 F yajD yajDp2 Sigma70 429745 429750 TTTTTT 18 429769 429774 GAAAAT 429779 2.818 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgggaTTTTTTttgatgtatggagatTGcGAAAATccccGcatct 429829 430176 F yajD yajDp3 Sigma70 429712 429717 TTGATG 16 429734 429739 GAAGAT 429744 2.923 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcccgTTGATGttgaaaatcccggtcaGAAGATcgggAttttt 429829 430176 F yajD yajDp4 Sigma70 429784 429789 TTGGGA 15 429805 429810 TACATT 429817 3.22 good homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatcTTGGGAaactgcgcgtaacccTACATTtcatccAggtaa 429829 430176 F yajD yajDp5 Sigma70 429718 429723 TTGAAA 19 429743 429748 GATTTT 429754 3.69 good homology 9.17E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTGAAAatcccggtcagaagatcggGATTTTttttgAtgtat 429829 430176 F yajD yajDp7 Sigma70 429765 429770 TTGCGA 17 429788 429793 GAAACT 429798 4.256 high homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggagaTTGCGAaaatccccgcatctTGgGAAACTgcgcGtaacc 431536 432075 R yajI yajIp1 Sigma70 432125 432130 TTCGCT 18 432101 432106 TAGGCT 432096 2.528 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgctTTCGCTgcttttaccctctaccatTAGGCTaattGcgacg 431536 432075 R yajI yajIp4 Sigma70 432212 432217 CTGACC 18 432188 432193 TATTTT 432182 2.688 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtcCTGACCaggtggttaacggaaatcTATTTTaccctGaactg 431536 432075 R yajI yajIp5 Sigma70 432130 432135 ATGCTT 17 432107 432112 TACCAT 432100 3.356 good homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgATGCTTtcgctgcttttaccctcTACCATtaggctAattgc 440773 442221 F thiI thiIp1 Sigma70 440697 440702 ATGCAG 19 440722 440727 TATTTT 440733 2.41 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggATGCAGccgcaggtgtgggctgctgTATTTTtccctAtacaa 440773 442221 F thiI thiIp3 Sigma70 440556 440561 TTTCTT 17 440579 440584 GACTCT 440589 2.886 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTTCTTcggcataatgaatgtctGACTCTcaatAttttt 442275 442865 R yajL yajLp1 Sigma70 442999 443004 TTGCAG 18 442975 442980 CACACT 442968 2.848 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgatgTTGCAGgatatccgcgcgctgcgcCACACTgaaatcGactat 446039 446929 R cyoE cyoEp1 Sigma70 447064 447069 ATGAAT 20 447038 447043 GAACAT 447033 1.784 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcacATGAATaccaaatcagatgaaggctgGAACATgacgGcgttt 446039 446929 R cyoE cyoEp2 Sigma70 446991 446996 TTGTAG 19 446966 446971 GAACCT 446960 1.85 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggTTGTAGgctccatctggattatgtgGAACCTcaactAcaaca 446039 446929 R cyoE cyoEp3 Sigma70 447024 447029 TTGTCT 19 446999 447004 TATCCT 446994 3.84 good homology 7.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTGTCTtcaccgtgctaatcatcgcTATCCTggttGtaggc 451294 452769 R ampG ampGp1 Sigma70 452831 452836 TTCATC 15 452810 452815 TAATTT 452804 2.43 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgaaTTCATCaagcagaacgcgcgtTAATTTctgccCtctgg 451294 452769 R ampG ampGp2 Sigma70 452977 452982 ATGGCA 17 452954 452959 TATCGT 452949 3.396 good homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaATGGCAacaaaatgaccaaaaacTATCGTgccaGctaca 452813 453391 R yajG yajGp1 Sigma70 453514 453519 TTACCA 19 453489 453494 CATGAT 453482 1.99 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcttTTACCAggggcgattatttcgtcaaCATGATgaatttAcatgc 452813 453391 R yajG yajGp2 Sigma70 453625 453630 TTCCAT 21 453598 453603 TAGGTT 453591 2.143 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgtTTCCATtgcagcttaacaacaaatattTAGGTTtcgtccTggttt 452813 453391 R yajG yajGp3 Sigma70 453626 453631 TTTCCA 18 453602 453607 TATTTA 453595 2.598 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taccgTTTCCAttgcagcttaacaacaaaTATTTAggtttcGtcctg 452813 453391 R yajG yajGp4 Sigma70 453450 453455 TTGGCA 15 453429 453434 GAATTT 453423 2.77 poor homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccgTTGGCAatgttatgatggcggGAATTTttaccAaacac 452813 453391 R yajG yajGp5 Sigma70 453462 453467 TTCCCC 16 453440 453445 TATGAT 453434 3.013 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cccacTTCCCCtcgccgttggcaaTGtTATGATggcggGaattt 463161 463532 F ybaV ybaVp2 Sigma70 463077 463082 TTCCAT 21 463104 463109 TACTGT 463114 2.913 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccttTTCCATttctgaacattgccatttgttTACTGTtttcActgcc 463161 463532 F ybaV ybaVp3 Sigma70 462940 462945 TTGAAG 19 462965 462970 TAAAGA 462976 3.27 good homology 8.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtctTTGAAGctctgatgagtaacctgcgTAAAGAggcgaAaatca 463161 463532 F ybaV ybaVp4 Sigma70 463099 463104 TTGTTT 17 463122 463127 TAAGGT 463134 4.286 high homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccatTTGTTTactgttttcactgccgtTAAGGTgattccActgtt 463626 464024 F fadM fadMp2 Sigma70 463493 463498 TTCGCT 20 463519 463524 TATTAA 463529 1.814 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcaaTTCGCTggtggaacgtaatctggcggTATTAAccctGtaatt 463626 464024 F fadM fadMp3 Sigma70 463396 463401 TTGGCC 16 463418 463423 GATTGT 463429 2.223 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgTTGGCCtgaagaaagcgcaggcGATTGTcagttAtcgcg 463626 464024 F fadM fadMp4 Sigma70 463584 463589 ATGACC 21 463611 463616 TAAGGT 463621 2.233 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagttATGACCtctgtacttataacaacaacgTAAGGTtattGcgcta 464076 464771 R queC queCp1 Sigma70 464813 464818 ATCGCA 19 464788 464793 TATTGT 464783 1.66 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaATCGCAggcgttaccataacgctttTATTGTtcaaGcagga 464076 464771 R queC queCp2 Sigma70 464992 464997 CTGAAA 16 464970 464975 TAATGA 464964 1.863 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgccCTGAAAgcggtttttagccagtTAATGAcagatGcgacg 464836 466536 R ybaE ybaEp1 Sigma70 466765 466770 ATGACG 20 466739 466744 TAATGT 466734 2.304 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgcATGACGccccgtggcaaaagtgagggTAATGTcgcgTtcacg 464836 466536 R ybaE ybaEp2 Sigma70 466691 466696 CTAAAT 16 466669 466674 TAAAGT 466664 2.493 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcacCTAAATgatggtcgggcatcaaTAAAGTgccaTccata 466636 467454 F cof cofp1 Sigma70 466530 466535 ATCGCA 16 466552 466557 TATTAT 466564 2.273 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaATCGCAtataaacccggaacaaTATTATttaactAttcac 466636 467454 F cof cofp2 Sigma70 466514 466519 TTAAGA 16 466536 466541 TATAAA 466547 2.763 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actggTTAAGAcggttgagcaatcgcaTATAAAcccggAacaat 466636 467454 F cof cofp3 Sigma70 466572 466577 TTACTT 15 466593 466598 GATACT 466604 3.15 good homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactaTTACTTccgtatatatcaggtGATACTcaatcAccatt 466636 467454 F cof cofp4 Sigma70 466558 466563 TTAACT 17 466581 466586 TATATA 466591 3.746 good homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTAACTattcactattacttccgTATATAtcagGtgata 474603 475175 F ybaY ybaYp1 Sigma70 474513 474518 GTGCCA 16 474535 474540 TATTTT 474545 2.083 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgtGTGCCAcacttgttgacgttacTATTTTgttaAccact 474603 475175 F ybaY ybaYp2 Sigma70 474539 474544 TTGTTA 17 474562 474567 GAAAGT 474574 4.076 high homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctattTTGTTAaccactcttccggcgagGAAAGTtagcccGctggt 475206 475595 R ybaZ ybaZp2 Sigma70 475656 475661 TTGAGA 15 475635 475640 CATTAT 475630 2.91 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcgTTGAGAaccaacgcgcaggcgCATTATcactGctgcc 475672 475785 F ffs ffsp1 Sigma70 475520 475525 TTTCTT 18 475544 475549 CATAAT 475555 2.938 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctTTTCTTcctgaggtaatttttcagCATAATctggaAaaacg 475672 475785 F ffs ffsp3 Sigma70 475520 475525 TTTCTT 20 475546 475551 TAATCT 475557 3.144 good homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctTTTCTTcctgaggtaatttttcagcaTAATCTggaaaAacgcc 475672 475785 F ffs ffsp4 Sigma70 475511 475516 TTTCCA 16 475533 475538 TAATTT 475543 3.293 good homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcttTTTCCAtcttttcttcctgaggTAATTTttcaGcataa 475672 475785 F ffs ffsp6 Sigma70 475479 475484 TTGCCA 16 475501 475506 GAATCT 475512 3.673 good homology 5.55E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgatTTGCCAgacgcgttggggaaatGAATCTtctttTtccat 475672 475785 F ffs ffsp7 Sigma70 475611 475616 TTGCAA 17 475634 475639 GATAAT 475646 5.816 high homology 9.35E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgggTTGCAAttagccggggcagcagtGATAATgcgcctGcgcgt 475896 476249 F ybaA ybaAp1 Sigma70 475803 475808 TTTCGT 19 475828 475833 TAAACT 475840 3.2 good homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caccgTTTCGTcaaaaaatcccaacatggcTAAACTttaaccAcaact 478591 479142 R maa maap1 Sigma70 479263 479268 TTTATA 19 479238 479243 TACCCT 479232 3.03 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTTATActttttcgccatgaagacaTACCCTatgtgAtcttt 478591 479142 R maa maap3 Sigma70 479198 479203 TTCTCT 17 479175 479180 TACTGT 479168 3.216 good homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacgTTCTCTtcactgacttttcgtctTACTGTgttgccGcattt 479314 479532 R hha hhap1 Sigma70 479601 479606 TTGTTT 16 479579 479584 GAGAAT 479573 2.803 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccgTTGTTTtgtcaatgcgacgaaaGAGAATcctgcGagttt 479314 479532 R hha hhap2 Sigma70 479678 479683 TTTATG 20 479652 479657 TAATAT 479646 3.074 poor homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaccTTTATGttgttcagtagttatggtatTAATATgcaggAtcttc 479314 479532 R hha hhap3 Sigma70 479686 479691 ATGACA 20 479660 479665 TATGGT 479655 3.094 poor homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggATGACAcctttatgttgttcagtagtTATGGTattaAtatgc 479314 479532 R hha hhap4 Sigma70 479678 479683 TTTATG 17 479655 479660 TATTAA 479649 3.306 good homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acaccTTTATGttgttcagtagttaTGgTATTAAtatgcAggatc 479314 479532 R hha hhap6 Sigma70 479756 479761 TTCGCA 18 479732 479737 TATAAT 479727 4.678 high homology 1.67E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaccTTCGCActtaattacaaaattaagTATAATgaagAcaata 489334 489495 R ybaM ybaMp2 Sigma70 489718 489723 TTGCCC 16 489696 489701 TATTCA 489690 2.873 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTGCCCgctggcagcgtaaacgTATTCAgcatcAggatt 490106 490483 F ybaN ybaNp2 Sigma70 490045 490050 CTCAAT 15 490066 490071 TATGCT 490077 2.41 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aagacCTCAATgaaaatgataatTGtTATGCTaaagtAgccac 490106 490483 F ybaN ybaNp3 Sigma70 490030 490035 TTTTCA 15 490051 490056 GAAAAT 490061 3.01 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcggTTTTCAcgataagacctcaatGAAAATgataAttgtt 490106 490483 F ybaN ybaNp4 Sigma70 490030 490035 TTTTCA 21 490057 490062 GATAAT 490067 3.163 good homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcggTTTTCAcgataagacctcaatgaaaatGATAATtgttAtgcta 490106 490483 F ybaN ybaNp6 Sigma70 490062 490067 TTGTTA 19 490087 490092 TAAGCT 490097 3.77 good homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gataaTTGTTAtgctaaagtagccactctgTAAGCTgacaAcactc 490106 490483 F ybaN ybaNp8 Sigma70 490049 490054 ATGAAA 16 490071 490076 TAAAGT 490081 4.023 high homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cctcaATGAAAatgataattgttaTGcTAAAGTagccActctg 499349 500653 F gsk gskp1 Sigma70 499242 499247 ATGAAA 19 499267 499272 TATTGA 499278 2.31 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctgccATGAAAatgcgatcccgcctgcTGaTATTGAaactgGctgcg 502700 503920 R fsr fsrp1 Sigma70 503984 503989 ATGTTA 19 503959 503964 TAAGAT 503953 2.52 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggtATGTTAgtctggtaataatcacaaaTAAGATcattcTttaca 502700 503920 R fsr fsrp2 Sigma70 504117 504122 CTGATT 16 504095 504100 TAGTAT 504089 2.663 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgacCTGATTtcaacgtgttgaaaaaTAGTATgacgcGacatc 502700 503920 R fsr fsrp3 Sigma70 504004 504009 TTCAGA 18 503980 503985 TAGTCT 503975 2.788 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cttccTTCAGAcgacgcatacaggtaTGtTAGTCTggtaAtaatc 502700 503920 R fsr fsrp5 Sigma70 504103 504108 TTGAAA 15 504082 504087 CATCAT 504076 3.46 good homology 1.29E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtgTTGAAAaatagtatgacgcgaCATCATagacaAgtctg 502700 503920 R fsr fsrp6 Sigma70 504103 504108 TTGAAA 20 504077 504082 TAGACA 504071 3.494 good homology 8.81E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtgTTGAAAaatagtatgacgcgacatcaTAGACAagtctGcgtcc 502700 503920 R fsr fsrp7 Sigma70 504008 504013 TTCCTT 17 503985 503990 TATGTT 503979 3.726 good homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagacTTCCTTcagacgacgcatacaggTATGTTagtctGgtaat 504138 505790 F ushA ushAp1 Sigma70 503962 503967 TTATTT 16 503984 503989 TAACAT 503994 2.483 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatcTTATTTgtgattattaccagacTAACATacctGtatgc 504138 505790 F ushA ushAp5 Sigma70 504060 504065 TTCACC 15 504081 504086 TATGAT 504092 3.47 good homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTCACCggacgcagacttgtcTATGATgtcgcGtcata 504138 505790 F ushA ushAp6 Sigma70 504076 504081 TTGTCT 17 504099 504104 TATTTT 504110 4.816 high homology 8.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagacTTGTCTatgatgtcgcgtcatacTATTTTtcaacAcgttg 505827 506306 R ybaK ybaKp2 Sigma70 506365 506370 TTTTTT 17 506342 506347 TATGCT 506335 3.916 good homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actctTTTTTTtggaccgccatcaggcgTATGCTtgcttcGttttt 506510 507304 R ybaP ybaPp1 Sigma70 507424 507429 TTGCTT 20 507398 507403 GAACAT 507392 2.624 poor homology 0.000139144 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactgTTGCTTccttgtgaatagcgatgcaaGAACATactgaAtcata 506510 507304 R ybaP ybaPp2 Sigma70 507404 507409 ATGCAA 15 507383 507388 TACAAA 507376 2.71 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcgATGCAAgaacatactgaatcaTACAAAcacattAaacaa 506510 507304 R ybaP ybaPp3 Sigma70 507519 507524 TTGATT 21 507492 507497 TATTCA 507486 3.693 good homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcaTTGATTttcaaatcgagcggttccagaTATTCAtagagAagaat 506510 507304 R ybaP ybaPp4 Sigma70 507519 507524 TTGATT 19 507494 507499 GATATT 507488 3.74 good homology 5.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcaTTGATTttcaaatcgagcggttccaGATATTcatagAgaaga 507442 507783 F ybaQ ybaQp1 Sigma70 507299 507304 ATCCAT 19 507324 507329 TATCAT 507334 2.07 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacagATCCATacgacctccctttgtgaaaTATCATgctaGcgcgc 507442 507783 F ybaQ ybaQp2 Sigma70 507388 507393 ATGATT 19 507413 507418 TATTCA 507424 2.14 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtATGATTcagtatgttcttgcatcgcTATTCAcaaggAagcaa 507442 507783 F ybaQ ybaQp3 Sigma70 507363 507368 TTGGAG 18 507387 507392 TATGAT 507398 4.378 high homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggagTTGGAGacttgtttaatgtgtttgTATGATtcagtAtgttc 507442 507783 F ybaQ ybaQp4 Sigma70 507374 507379 TTTAAT 17 507397 507402 TATGTT 507408 4.506 high homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttgTTTAATgtgtttgtatgattcagTATGTTcttgcAtcgct 513217 513624 F cueR cueRp1 Sigma70 513027 513032 ATTATT 20 513053 513058 TATTGT 513063 1.924 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatggATTATTggctcactcttactcagcctTATTGTggcaAtggtc 513217 513624 F cueR cueRp2 Sigma70 513142 513147 TTCGCA 19 513167 513172 GAATAT 513178 2.15 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTCGCActggcaaaaaaacgtgcttGAATATctgttGaaacc 513217 513624 F cueR cueRp5 Sigma70 513069 513074 ATGAAG 15 513090 513095 TAACAT 513102 2.93 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtcATGAAGcgcaataaaaccgtaTAACATctctctGtgcgc 513217 513624 F cueR cueRp6 Sigma70 513165 513170 TTGAAT 16 513187 513192 TAACAA 513198 3.383 good homology 3.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgcTTGAATatctgttgaaacccttTAACAAagcacAggagg 513217 513624 F cueR cueRp7 Sigma70 512967 512972 TTGGTG 15 512988 512993 TACAGT 512999 3.46 good homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttgTTGGTGatcgttggctttatcTACAGTctgtgGtccca 515143 515820 F ybbL ybbLp1 Sigma70 515091 515096 TTCCTG 21 515118 515123 TAAAAA 515129 2.123 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTCCTGcgaaggataaactgtttttagTAAAAAtcagaAaaagg 515143 515820 F ybbL ybbLp2 Sigma70 515037 515042 TTGCTG 15 515058 515063 TATACC 515069 2.23 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaTTGCTGcttgattaaacaaatTATACCtgattActgaa 515143 515820 F ybbL ybbLp6 Sigma70 515081 515086 TTCCCC 17 515104 515109 TAAACT 515116 4.336 high homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagagTTCCCCcttattcctgcgaaggaTAAACTgtttttAgtaaa 517564 518373 R ybbO ybbOp1 Sigma70 518512 518517 TTGATG 19 518487 518492 TATGGA 518482 2.43 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagtTTGATGttccgctgctgccctttttTATGGAagagGtctac 517564 518373 R ybbO ybbOp3 Sigma70 518597 518602 TTAATG 21 518570 518575 TATGGT 518565 2.803 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattgTTAATGcaaatacgtctgcctgcaaacTATGGTcgccGttata 517564 518373 R ybbO ybbOp4 Sigma70 518582 518587 CTGCCT 18 518558 518563 TATAAT 518553 4.468 high homology 2.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgtCTGCCTgcaaactatggtcgccgtTATAATgaagCcttta 518957 519643 F ybbA ybbAp1 Sigma70 518765 518770 TTGTTG 15 518786 518791 GATGCT 518798 2.31 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtccTTGTTGcgaggtgtcgccgctGATGCTggcattAactac 518957 519643 F ybbA ybbAp2 Sigma70 518790 518795 CTGGCA 16 518812 518817 TACTCT 518822 2.393 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgCTGGCAttaactaccgacgtttTACTCTgccaCttatc 522485 526765 F rhsD rhsDp1 Sigma70 522293 522298 ATGAAT 19 522318 522323 TAGTTT 522329 2.34 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgatgATGAATtcatctgtgctaaaaaTGtTAGTTTaataaAatatt 522485 526765 F rhsD rhsDp2 Sigma70 522321 522326 TTTAAT 20 522347 522352 TAATAA 522358 2.564 poor homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttagTTTAATaaaatattgaaagtgacctgTAATAAcagttGttgtt 522485 526765 F rhsD rhsDp3 Sigma70 522362 522367 TTGATT 20 522388 522393 GAAAAA 522399 2.594 poor homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgttgTTGATTgagaacaaataagtttaTGtGAAAAAtatatAaatac 522485 526765 F rhsD rhsDp4 Sigma70 522381 522386 TTTATG 15 522402 522407 TACATT 522413 2.97 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataagTTTATGtgaaaaatatataaaTACATTagctgGtcttg 522485 526765 F rhsD rhsDp7 Sigma70 522287 522292 TTGATG 16 522309 522314 TAAAAA 522320 3.573 good homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atttgTTGATGatgaattcatctgTGcTAAAAAtgttaGtttaa 522485 526765 F rhsD rhsDp8 Sigma70 522256 522261 TTGAAT 18 522280 522285 GAATTT 522290 3.658 good homology 3.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTGAATggatattatccatatagtGAATTTgttgAtgatg 522485 526765 F rhsD rhsDp9 Sigma70 522406 522411 TTAGCT 17 522429 522434 TATTTT 522440 3.806 good homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacaTTAGCTggtcttgtgtgtcatttTATTTTtttttGttgct 529356 530450 R selU selUp1 Sigma70 530511 530516 ATCAAG 20 530485 530490 TAAAAT 530479 2.314 poor homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATCAAGtttccttgcgcgttggcgcgTAAAATagcgcGcaagc 529356 530450 R selU selUp3 Sigma70 530543 530548 TTAGAA 21 530516 530521 TAAAAA 530511 2.793 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTAGAAattttcggcaacccacgcagtTAAAAAtcaaGtttcc 529356 530450 R selU selUp4 Sigma70 530614 530619 TTGGCA 19 530589 530594 TATTGT 530582 4.29 high homology 3.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatTTGGCAgcggcaaagcggtagaagaTATTGTgaccttGtttac 529356 530450 R selU selUp5 Sigma70 530614 530619 TTGGCA 17 530591 530596 GATATT 530586 4.456 high homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatTTGGCAgcggcaaagcggtagaaGATATTgtgaCcttgt 545904 547571 F fdrA fdrAp1 Sigma70 545724 545729 TTTAAA 21 545751 545756 TAATGA 545762 2.553 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTTAAAacaacaacgcttattaaaaaaTAATGAgtaatAgcctg 545904 547571 F fdrA fdrAp2 Sigma70 545723 545728 TTTTAA 15 545744 545749 TAAAAA 545755 2.93 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTTTAAaacaacaacgcttatTAAAAAataatGagtaa 545904 547571 F fdrA fdrAp3 Sigma70 545718 545723 CTGATT 17 545741 545746 TATTAA 545752 3.206 good homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaacCTGATTtttaaaacaacaacgctTATTAAaaaatAatgag 545904 547571 F fdrA fdrAp4 Sigma70 545695 545700 TTGATA 19 545720 545725 GATTTT 545730 3.38 good homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTGATAatccgctcacttttaacctGATTTTtaaaAcaaca 545904 547571 F fdrA fdrAp5 Sigma70 545690 545695 TTTATT 18 545714 545719 TAACCT 545726 3.648 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagaaTTTATTtgataatccgctcactttTAACCTgattttTaaaac 550750 551817 R purK purKp1 Sigma70 551991 551996 ATGCCG 17 551968 551973 TACGCT 551963 3.066 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaATGCCGcgcggcattccggtgggTACGCTggcgAttggt 552441 553163 R lpxH lpxHp1 Sigma70 553276 553281 TTGACG 16 553254 553259 CAAAAT 553248 3.213 good homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtggTTGACGgcatggacgtggtagaCAAAATcaaagGtgttg 555255 555776 R ybcI ybcIp1 Sigma70 555942 555947 CTGCAA 15 555921 555926 GACAGT 555914 2.1 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaacgCTGCAAaatcgtcgccggtcaGACAGTgagtttTgcagg 555255 555776 R ybcI ybcIp4 Sigma70 555832 555837 TTGCCC 17 555809 555814 CATGCT 555804 3.036 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacttTTGCCCtctacgccccgttcatcCATGCTgataGcatcg 555255 555776 R ybcI ybcIp5 Sigma70 555886 555891 TTGCCT 18 555862 555867 TATCAA 555855 3.688 good homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttgTTGCCTgatccctttcccggcctgTATCAAcaggccGgttct 555884 556096 R ybcJ ybcJp3 Sigma70 556223 556228 TTGAAG 20 556197 556202 TACATT 556190 3.804 good homology 3.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgtTTGAAGacgcggctaaacgcgcctcaTACATTacgcctGttccc 555884 556096 R ybcJ ybcJp4 Sigma70 556145 556150 TTGAAA 20 556119 556124 GAATAT 556114 3.934 good homology 6.14E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaTTGAAAacacgctacaggcgtgcgttGAATATcatgAtccac 555884 556096 R ybcJ ybcJp7 Sigma70 556277 556282 TTGATG 17 556254 556259 GAAAAT 556248 4.746 high homology 9.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTGATGtcggcatcaaccgtctgGAAAATggcaaAgttgt 557435 557977 F sfmA sfmAp1 Sigma70 557334 557339 TTCTTA 20 557360 557365 TACTAT 557370 2.434 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacaTTCTTAgaggataaaaaggaatttacTACTATcagtGtctta 557435 557977 F sfmA sfmAp2 Sigma70 557276 557281 ATTCAT 21 557303 557308 TAGAAT 557314 2.483 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaagtATTCATctaacggggctctctatttttTAGAATagagtGcatat 557435 557977 F sfmA sfmAp3 Sigma70 557320 557325 TTTCAA 19 557345 557350 TAAAAA 557355 3.28 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatTTTCAAttaagacattcttagaggaTAAAAAggaaTttact 557435 557977 F sfmA sfmAp4 Sigma70 557253 557258 TTGAAT 16 557275 557280 TATTCA 557285 3.973 good homology 1.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtgTTGAATatattttgcgcggaagTATTCAtctaAcgggg 557435 557977 F sfmA sfmAp6 Sigma70 557355 557360 TTTACT 17 557378 557383 TAAAGT 557389 5.176 high homology 5.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggaaTTTACTactatcagtgtcttaaaTAAAGTaatcgGttata 558197 558889 F sfmC sfmCp1 Sigma70 558100 558105 TTAAAT 20 558126 558131 TAAGAA 558137 2.204 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTAAATgaaaagggaatgatgtgttgTAAGAAaccaaAgcaat 558197 558889 F sfmC sfmCp2 Sigma70 558058 558063 ATGTAA 21 558085 558090 TATCAT 558095 2.973 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaATGTAAatcgaaatcatgttcactttgTATCATgccgCtttat 558197 558889 F sfmC sfmCp3 Sigma70 558155 558160 TTCCTT 17 558178 558183 TACACA 558188 3.096 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTCCTTatttttgccgtcaggaaTACACAaggcGtatta 558197 558889 F sfmC sfmCp4 Sigma70 557994 557999 TTGAAT 19 558019 558024 CAAAGT 558030 3.25 good homology 3.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTGAATtatatatcacgtcttataaCAAAGTaatgtAccggt 558197 558889 F sfmC sfmCp5 Sigma70 557994 557999 TTGAAT 16 558016 558021 TAACAA 558026 3.383 good homology 3.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTGAATtatatatcacgtcttaTAACAAagtaAtgtac 561559 562542 F sfmH sfmHp1 Sigma70 561520 561525 ATAAAG 16 561542 561547 TAATCT 561552 1.953 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggctcATAAAGgaaattatcaataagaTAATCTgcagAttatt 561559 562542 F sfmH sfmHp2 Sigma70 561513 561518 CTGGCT 21 561540 561545 GATAAT 561551 2.403 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatcCTGGCTcataaaggaaattatcaataaGATAATctgcaGattat 561559 562542 F sfmH sfmHp3 Sigma70 561502 561507 TTGCAC 18 561526 561531 GAAATT 561536 3.208 good homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagtTTGCACacatcctggctcataaagGAAATTatcaAtaaga 563071 563703 R fimZ fimZp1 Sigma70 563757 563762 ATCAAA 21 563730 563735 GAAAAT 563724 2.203 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgtATCAAAgtacaatttcccgacctaacgGAAAATtgtccGctcct 563071 563703 R fimZ fimZp2 Sigma70 563866 563871 TTGCTG 21 563839 563844 GATTTT 563834 2.423 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTGCTGaacaagtgaacgaccgcgtctGATTTTctgaTttatt 564038 565201 R intD intDp1 Sigma70 565325 565330 ATGGCG 15 565304 565309 GATAAT 565298 2.21 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaATGGCGatgacgcatcctcacGATAATatccgGgtacc 564038 565201 R intD intDp2 Sigma70 565401 565406 TTGACG 20 565375 565380 GAAAAA 565370 2.254 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagttTTGACGagatggtgccggagttcatcGAAAAAatggAcgagg 564038 565201 R intD intDp3 Sigma70 565266 565271 TTGCGG 19 565241 565246 TACTGT 565236 2.39 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcaTTGCGGcgcttcagtctccgctgcaTACTGTccagGtgagc 564038 565201 R intD intDp4 Sigma70 565266 565271 TTGCGG 17 565243 565248 CATACT 565237 3.046 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcaTTGCGGcgcttcagtctccgctgCATACTgtccaGgtgag 564038 565201 R intD intDp5 Sigma70 565325 565330 ATGGCG 17 565302 565307 TAATAT 565297 3.416 good homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaATGGCGatgacgcatcctcacgaTAATATccggGtacct 566065 566364 F insE insEp2 Sigma70 565971 565976 TTGCCG 18 565995 566000 TAATCT 566007 4.528 high homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggacgTTGCCGcggtaacaggcgcaaccgTAATCTgatcttAcccag 568125 569651 F ybcK ybcKp2 Sigma70 567986 567991 ATGGCG 20 568012 568017 TATTGT 568023 1.834 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agattATGGCGtaagaaaattgcaatacgatTATTGTtgtatAttcaa 568125 569651 F ybcK ybcKp5 Sigma70 568000 568005 TTGCAA 16 568022 568027 TATTCA 568033 3.883 good homology 2.67E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTGCAAtacgattattgttgtaTATTCAagataAtgtga 568125 569651 F ybcK ybcKp6 Sigma70 567908 567913 TTATAT 17 567931 567936 TATGCT 567941 4.126 high homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggctcTTATATttatatgagcctcgtttTATGCTttttGttaat 568125 569651 F ybcK ybcKp7 Sigma70 567939 567944 TTGTTA 18 567963 567968 TATTCT 567974 4.778 high homology 2.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGTTAatgtctttattttttatgTATTCTtttgtGctttc 570116 570667 F ybcL ybcLp1 Sigma70 570051 570056 TTTATG 15 570072 570077 GAATAT 570083 2.34 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgccTTTATGcataatgagataaagGAATATcaaatAaaata 570116 570667 F ybcL ybcLp2 Sigma70 570033 570038 TTGCAT 20 570059 570064 TAATGA 570070 2.724 poor homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcttTTGCATgaacattgcgcctttatgcaTAATGAgataaAggaat 570116 570667 F ybcL ybcLp3 Sigma70 570027 570032 TTGCTT 20 570053 570058 TATGCA 570064 2.784 poor homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTGCTTttgcatgaacattgcgccttTATGCAtaatgAgataa 570116 570667 F ybcL ybcLp4 Sigma70 569991 569996 TTGTGG 19 570016 570021 TACAAT 570026 2.92 poor homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtataTTGTGGcaaataattgggttgggggTACAATtgtgAttgct 570116 570667 F ybcL ybcLp5 Sigma70 569961 569966 TTTAGA 20 569987 569992 TATATT 569998 3.144 good homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagttTTTAGAtagtatcaatgtgctttgtgTATATTgtggcAaataa 570116 570667 F ybcL ybcLp6 Sigma70 569962 569967 TTAGAT 21 569989 569994 TATTGT 570000 3.163 good homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtttTTAGATagtatcaatgtgctttgtgtaTATTGTggcaaAtaatt 570116 570667 F ybcL ybcLp7 Sigma70 570033 570038 TTGCAT 18 570057 570062 CATAAT 570068 4.258 high homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcttTTGCATgaacattgcgcctttatgCATAATgagatAaagga 571689 572144 F ybcN ybcNp1 Sigma70 571481 571486 TTTAAG 16 571503 571508 GATTTT 571515 1.983 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgtTTTAAGaaggagcaattctatcGATTTTgattttGggaaa 571689 572144 F ybcN ybcNp2 Sigma70 571507 571512 TTGATT 19 571532 571537 TAATTA 571542 2.73 poor homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgattTTGATTttgggaaatcaacacggcaTAATTAtgtcAccgga 571689 572144 F ybcN ybcNp5 Sigma70 571507 571512 TTGATT 17 571530 571535 CATAAT 571542 4.846 high homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgattTTGATTttgggaaatcaacacggCATAATtatgtcAccgga 573179 573562 F quuD quuDp1 Sigma70 573090 573095 ATGAAG 21 573117 573122 TACTGT 573129 2.383 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagtATGAAGtcagagataacaatcaactaaTACTGTtttgttGatttt 573179 573562 F quuD quuDp2 Sigma70 573134 573139 TTGCTT 19 573159 573164 GATTTT 573170 2.88 poor homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGCTTgtaattggcgttctggtctGATTTTtgtggAgtaag 573960 574976 R insH insHp1 Sigma70 575160 575165 TTGCTT 16 575138 575143 TAAGGA 575132 2.463 poor homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccgTTGCTTacctgcaatctaaaggTAAGGAtcttgGagtat 573960 574976 R insH insHp2 Sigma70 575075 575080 TTACTT 15 575054 575059 TACTTT 575048 2.58 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctaTTACTTcaacaaaaatatgtcTACTTTcgttgAttaca 573960 574976 R insH insHp4 Sigma70 575025 575030 TTGACA 17 575002 575007 GAAGGT 574997 4.356 high homology 2.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgcTTGACAaaaatgacttcactaagGAAGGTgcgaAcaagt 578407 578817 R ybcV ybcVp1 Sigma70 579062 579067 TTAAAA 20 579036 579041 TATGAA 579030 2.694 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcggTTAAAAtattacttcaaatctttctgTATGAAggtttGagcac 578407 578817 R ybcV ybcVp3 Sigma70 578874 578879 TTGAAG 17 578851 578856 CAAACT 578846 4.106 high homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagaTTGAAGcgataaaaacgataatgCAAACTacgcGccctc 579103 579309 F ybcW ybcWp1 Sigma70 578954 578959 TTGCGT 21 578981 578986 CATTCT 578992 2.073 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attggTTGCGTaacaaagtgcggtcctgcTGgCATTCTggaggGaaata 579103 579309 F ybcW ybcWp2 Sigma70 578935 578940 TTTCAA 21 578962 578967 CAAAGT 578972 2.243 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgtTTTCAAttaatagtattggttgcgtaaCAAAGTgcggTcctgc 579103 579309 F ybcW ybcWp3 Sigma70 578936 578941 TTCAAT 17 578959 578964 TAACAA 578970 3.196 good homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgttTTCAATtaatagtattggttgcgTAACAAagtgcGgtcct 579103 579309 F ybcW ybcWp5 Sigma70 578854 578859 TTGCAT 17 578877 578882 CAATCT 578888 3.816 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtagtTTGCATtatcgtttttatcgcttCAATCTggtctGacctc 579103 579309 F ybcW ybcWp6 Sigma70 579036 579041 TTCATA 18 579060 579065 TATTTT 579070 3.868 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaccTTCATAcagaaagatttgaagtaaTATTTTaaccGctaga 579103 579309 F ybcW ybcWp7 Sigma70 579036 579041 TTCATA 15 579057 579062 TAATAT 579067 4.14 high homology 7.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaccTTCATAcagaaagatttgaagTAATATtttaAccgct 580057 580602 F nohD nohDp1 Sigma70 579888 579893 TTCGCT 21 579915 579920 TAAGGT 579927 2.443 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggttTTCGCTatttatgaaaattttccggttTAAGGTgtttccGttctt 580057 580602 F nohD nohDp2 Sigma70 579934 579939 TTCGTC 19 579959 579964 TAAAAT 579971 2.79 poor homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttcTTCGTCgtaacttaatgtatttattTAAAATacccccTgaaaa 580057 580602 F nohD nohDp3 Sigma70 579922 579927 TTTCCG 18 579946 579951 TAATGT 579956 3.168 good homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtgTTTCCGttcttcttcgtcgtaactTAATGTatttAtttaa 586314 587204 R ybcH ybcHp2 Sigma70 587366 587371 TTGGCG 16 587344 587349 GAATAT 587339 2.643 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagcTTGGCGgagtcggggtccgctgGAATATctggAccggc 587205 590177 R nfrA nfrAp1 Sigma70 590248 590253 TTACAA 19 590223 590228 TACTCA 590217 2.07 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgaaTTACAAgtttcgatgcaatcactatTACTCAaagcaGgttta 592551 593993 R cusS cusSp1 Sigma70 594118 594123 ATGAAT 20 594092 594097 TATTGA 594087 1.854 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gggacATGAATtttgacagcgataccaaTGcTATTGAtgtgGcggtg 592551 593993 R cusS cusSp2 Sigma70 594217 594222 ATCACT 17 594194 594199 TACTCT 594188 2.986 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcATCACTttgaccagtaaagagttTACTCTgctggAgttct 602639 603886 R mscM mscMp3 Sigma70 603937 603942 TTGCAT 17 603914 603919 CATCAT 603908 3.806 good homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTGCATaaccctgtttcagccgtCATCATaggctGctgtt 604741 605109 R ybdF ybdFp1 Sigma70 605285 605290 ATGGAT 19 605260 605265 TATTGT 605255 2.73 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctgATGGATcttagtcagctttacacttTATTGTtttgTctgtg 604741 605109 R ybdF ybdFp2 Sigma70 605243 605248 TTTTTA 18 605219 605224 TATTTT 605213 3.178 good homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggTTTTTAgtgctgggcgctattgagTATTTTgttctGcgctt 604741 605109 R ybdF ybdFp4 Sigma70 605294 605299 TTCCAT 21 605267 605272 TACACT 605261 3.823 good homology 0.000103081 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccatgTTCCATctgatggatcttagtcagcttTACACTttattGttttg 605174 605422 R ybdJ ybdJp2 Sigma70 605659 605664 CTGGAA 20 605633 605638 TAAAAT 605628 3.284 good homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgCTGGAAaaaatcgccccttccgcacaTAAAATtggtGcatcg 605174 605422 R ybdJ ybdJp4 Sigma70 605474 605479 TTGCCT 17 605451 605456 GACAAT 605446 4.876 high homology 5.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggaaTTGCCTtacagaagaatatccctGACAATggtgTtttaa 605488 606606 R ybdK ybdKp1 Sigma70 606746 606751 TTGTCA 15 606725 606730 CAAATT 606719 2.48 poor homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacTTGTCAcattgcaaaagtagcCAAATTgcttcAggcac 607288 608400 F insL insLp1 Sigma70 607246 607251 TTAAGG 19 607271 607276 TATGAT 607282 2.51 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctaacTTAAGGgttgtggtattacgccTGaTATGATttaacGtgccg 607288 608400 F insL insLp3 Sigma70 607171 607176 TTGAGT 17 607194 607199 TACGAA 607205 3.216 good homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTGAGTttaaggctgttctcgctTACGAAccgaaGaagta 608682 609311 R entD entDp2 Sigma70 609391 609396 TTGCCA 16 609369 609374 GACCAT 609364 3.013 poor homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTGCCAattcaatatattgcagGACCATgtagGcctga 608682 609311 R entD entDp4 Sigma70 609402 609407 CTACAA 17 609379 609384 TATATT 609373 3.466 good homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggcCTACAAaaatcttgccaattcaaTATATTgcaggAccatg 618607 619422 R fepC fepCp1 Sigma70 619456 619461 TTACCT 19 619431 619436 GAGTCT 619425 1.67 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtatTTACCTtatcgtcttgttaattcagGAGTCTcgcaaAaaatg 631612 632700 R ybdH ybdHp1 Sigma70 632783 632788 TTGCGT 19 632758 632763 GATGCT 632753 2.47 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaagTTGCGTgttgaaggcactataacacGATGCTagtaTttggc 631612 632700 R ybdH ybdHp4 Sigma70 632747 632752 TTGGCA 19 632722 632727 TAAATA 632716 2.93 poor homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtatTTGGCAatcaagacgtttagatgtcTAAATAaaacaAtaagg 631612 632700 R ybdH ybdHp5 Sigma70 632890 632895 TTGCTG 21 632863 632868 GAAAAT 632858 3.483 good homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtgTTGCTGcgccagcgcgctcatctgggtGAAAATagtgGtgcca 631612 632700 R ybdH ybdHp7 Sigma70 632776 632781 TTGAAG 17 632753 632758 TAGTAT 632747 5.086 high homology 4.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgtgTTGAAGgcactataacacgaTGcTAGTATttggcAatcaa 632809 633969 F ybdL ybdLp2 Sigma70 632690 632695 TTGTGA 18 632714 632719 TATTGT 632724 3.678 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taggaTTGTGAggcatgttgtgttgtcctTATTGTtttaTttaga 632809 633969 F ybdL ybdLp3 Sigma70 632746 632751 TTGCCA 16 632768 632773 TATAGT 632780 5.383 high homology 3.80E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cttgaTTGCCAaatactagcatcgTGtTATAGTgccttcAacacg 633970 634599 R ybdM ybdMp1 Sigma70 634688 634693 ATAACG 18 634664 634669 TATCAT 634659 2.248 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcaATAACGattactggtgtcgggcatTATCATttagCcccac 635939 636841 R ybdO ybdOp1 Sigma70 636884 636889 TTGATT 19 636859 636864 GAAAAA 636854 2.85 poor homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaacaTTGATTaagtgaatatatcatggaaGAAAAAtataAccgga 641311 642549 F ybdR ybdRp1 Sigma70 641130 641135 ATGATT 15 641151 641156 GATATT 641162 2.51 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgccATGATTataatatttatccctGATATTtgtctGgttct 641311 642549 F ybdR ybdRp2 Sigma70 641170 641175 TTCCTT 18 641194 641199 GAATAT 641206 2.658 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctttTTCCTTacgaactgtttctgtgatGAATATattctcActgaa 641311 642549 F ybdR ybdRp4 Sigma70 641174 641179 TTACGA 19 641199 641204 TATTCT 641210 3.04 poor homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttccTTACGAactgtttctgtgatgaataTATTCTcactgAacacc 641311 642549 F ybdR ybdRp5 Sigma70 641170 641175 TTCCTT 21 641197 641202 TATATT 641209 3.573 good homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctttTTCCTTacgaactgtttctgtgatgaaTATATTctcactGaacac 641311 642549 F ybdR ybdRp6 Sigma70 641112 641117 ATGAAC 17 641135 641140 TATAAT 641145 4.956 high homology 2.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatcATGAACaaatcattcgccatgatTATAATatttAtccct 642780 643190 R rnk rnkp1 Sigma70 643255 643260 CTGACG 19 643230 643235 TATGTT 643224 2.14 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgcCTGACGgtgagggttttcttttgggTATGTTtatctGcgaca 642780 643190 R rnk rnkp3 Sigma70 643383 643388 TTCCAT 20 643357 643362 TATACA 643352 2.734 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtcTTCCATaaaccaaggcgattaagattTATACAtaatGcgctg 642780 643190 R rnk rnkp4 Sigma70 643241 643246 TTTCTT 18 643217 643222 GACACT 643212 2.838 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agggtTTTCTTttgggtatgtttatcTGcGACACTcgcaGcaccg 642780 643190 R rnk rnkp6 Sigma70 643307 643312 TTCAAA 17 643284 643289 TATCAT 643278 5.076 high homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcacTTCAAAgagtgagcaacagtcagTATCATcatgtGagtta 644340 645803 R citT citTp2 Sigma70 645874 645879 TTACCT 21 645847 645852 TATTTA 645842 1.933 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatccTTACCTggtttttagcacagatttaatTATTTAagcaCttgat 644340 645803 R citT citTp3 Sigma70 645845 645850 TTTAAG 19 645820 645825 TATTAA 645814 2.55 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTTAAGcacttgataaatttggaaaTATTAAttttcGgagaa 644340 645803 R citT citTp6 Sigma70 645853 645858 TTTAAT 15 645832 645837 TAAATT 645826 4.2 high homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acagaTTTAATtatttaagcactTGaTAAATTtggaaAtatta 656778 657161 R crcB crcBp1 Sigma70 657222 657227 TTCGCC 19 657197 657202 TACACT 657192 2.45 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTCGCCaacgacgattattcggcgtTACACTtatcActcat 656778 657161 R crcB crcBp3 Sigma70 657249 657254 TTGCCA 16 657227 657232 TAAAAT 657221 5.653 high homology 2.47E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaTTGCCAcctcctgtcagagtcgTAAAATtcgccAacgac 658170 658373 F tatE tatEp1 Sigma70 658048 658053 TTTACT 20 658074 658079 TACAGA 658085 2.114 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttttTTTACTcggcgcttgattcacctTGtTACAGAttgctAttgtg 658170 658373 F tatE tatEp2 Sigma70 658086 658091 TTGTGT 19 658111 658116 TAATAT 658122 3.28 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaTTGTGTgcgcgcgtcgaatgaccgtTAATATtctctGgtttt 658170 658373 F tatE tatEp3 Sigma70 658060 658065 TTGATT 18 658084 658089 TATTGT 658094 5.098 high homology 1.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggcgcTTGATTcaccttgttacagatTGcTATTGTgtgcGcgcgt 659648 660601 R ybeF ybeFp1 Sigma70 660800 660805 ATGCTT 21 660773 660778 TATTTT 660768 2.743 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaATGCTTtacatctccttcgcgtttgtaTATTTTctttAtcact 659648 660601 R ybeF ybeFp2 Sigma70 660667 660672 TTCCAA 18 660643 660648 TAATTT 660637 3.598 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccgTTCCAAttagacataagattattgTAATTTtttaaAtatta 659648 660601 R ybeF ybeFp4 Sigma70 660715 660720 TTGATT 20 660689 660694 TATGGT 660683 4.124 high homology 2.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccccaTTGATTaacctattgaaatagttgatTATGGTgagcaAaagcg 659648 660601 R ybeF ybeFp5 Sigma70 660796 660801 TTTACA 15 660775 660780 TATATT 660768 4.6 high homology 2.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcTTTACAtctccttcgcgtttgTATATTttctttAtcact 659648 660601 R ybeF ybeFp7 Sigma70 660637 660642 TTTAAA 17 660614 660619 TAAAAT 660609 6.026 high homology 7.89E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTTAAAtattatttttccatgaaTAAAATtggaGtaagt 660860 661501 R lipB lipBp1 Sigma70 661640 661645 ATGAAG 16 661618 661623 TATTGT 661613 3.003 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgtATGAAGaactgggcaaaatcgaTATTGTccgcAtggtt 660860 661501 R lipB lipBp3 Sigma70 661652 661657 TTGAAA 19 661627 661632 CAAAAT 661622 4 good homology 7.21E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaggTTGAAAcactgtatgaagaactgggCAAAATcgatAttgtc 661975 663186 R dacA dacAp3 Sigma70 663253 663258 ATGCCT 17 663230 663235 TATAGT 663224 4.736 high homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtcagATGCCTgccggtagtgcattTGcTATAGTagggcActttt 663325 664413 R rlpA rlpAp1 Sigma70 664487 664492 CTGATG 16 664465 664470 TAATGT 664458 2.183 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtgCTGATGgctgggttcgggattgTAATGTcaatccAcaccc 663325 664413 R rlpA rlpAp4 Sigma70 664577 664582 TTCGTA 20 664551 664556 TATTCT 664546 2.974 poor homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtcTTCGTAaatattggtatggtaagcggTATTCTgccgGttgta 663325 664413 R rlpA rlpAp6 Sigma70 664616 664621 ATGGCT 16 664594 664599 TATTAT 664587 3.253 good homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgtcATGGCTggcggcttaatgcTGaTATTATtcgtttAtgtct 663325 664413 R rlpA rlpAp7 Sigma70 664468 664473 TTGTAA 19 664443 664448 GAAAAT 664436 3.88 good homology 6.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggaTTGTAAtgtcaatccacacccacagGAAAATgttgtcGaaaag 668519 669130 R cobC cobCp1 Sigma70 669199 669204 TTGCCG 20 669173 669178 TAACCA 669167 1.924 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTGCCGgaaccggtactgacttacatTAACCAacaagGcttgt 668519 669130 R cobC cobCp3 Sigma70 669284 669289 TTATCT 18 669260 669265 TAACAT 669255 3.098 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTATCTggctgaaacgccgtggttTAACATctcgGcgacc 668519 669130 R cobC cobCp5 Sigma70 669199 669204 TTGCCG 15 669178 669183 TACATT 669172 3.91 good homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTGCCGgaaccggtactgactTACATTaaccaAcaagg 674793 675770 R ybeQ ybeQp2 Sigma70 675980 675985 TTTCCA 19 675955 675960 CAATAT 675949 2.06 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaTTTCCAtcggagtggaaagtgcaaaCAATATtttttGcgact 674793 675770 R ybeQ ybeQp3 Sigma70 675947 675952 TTTGCG 19 675922 675927 TATCCT 675916 2.38 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTTGCGactccatgtccatataattTATCCTtaaatAttcat 674793 675770 R ybeQ ybeQp4 Sigma70 675991 675996 TTCATT 19 675966 675971 GAAAGT 675961 2.49 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaTTCATTgcgtatttccatcggagtgGAAAGTgcaaAcaata 674793 675770 R ybeQ ybeQp5 Sigma70 675828 675833 TTACGC 20 675802 675807 TATAAT 675795 2.624 poor homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaggcTTACGCaaaaatggaacacataaaaaTATAATatgtttTatctg 674793 675770 R ybeQ ybeQp8 Sigma70 675895 675900 TTAGCC 21 675868 675873 TATACT 675862 3.263 good homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTAGCCgcattgcgaggctcgtttattTATACTtttctGacgcg 674793 675770 R ybeQ ybeQp9 Sigma70 675979 675984 TTCCAT 21 675952 675957 TATTTT 675946 3.323 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtatTTCCATcggagtggaaagtgcaaacaaTATTTTttgcgActcca 674793 675770 R ybeQ ybeQp11 Sigma70 675950 675955 TTTTTT 15 675929 675934 TATAAT 675923 4.1 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTTTTTgcgactccatgtccaTATAATttatcCttaaa 674793 675770 R ybeQ ybeQp12 Sigma70 675863 675868 TTTTCT 18 675839 675844 TAAAAT 675834 4.258 high homology 5.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatacTTTTCTgacgcgacataatacgcaTAAAATaaggCttacg 675934 676641 F ybeR ybeRp2 Sigma70 675871 675876 ATAAAT 21 675898 675903 TAATAT 675910 2.743 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagtATAAATaaacgagcctcgcaatgcggcTAATATtcatttAatgaa 675934 676641 F ybeR ybeRp3 Sigma70 675717 675722 TTCGAT 15 675738 675743 TAAATT 675749 3.25 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcacgTTCGATaatctcatctatTGaTAAATTatcgcAgcaac 675934 676641 F ybeR ybeRp5 Sigma70 675776 675781 TTTCCT 19 675801 675806 TATTAT 675813 4.11 high homology 4.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTTCCTtatggttgcagataaaacaTATTATatttttAtgtgt 675934 676641 F ybeR ybeRp6 Sigma70 675826 675831 TTGCGT 17 675849 675854 TATTAT 675860 5.216 high homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTGCGTaagccttattttatgcgTATTATgtcgcGtcaga 678075 678629 R ybeT ybeTp1 Sigma70 678702 678707 TTAACT 21 678675 678680 GAGTAT 678668 2.253 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcaTTAACTgactacttttttattattgatGAGTATaaacttGacgct 678075 678629 R ybeT ybeTp2 Sigma70 678694 678699 CTACTT 18 678670 678675 TAAACT 678665 2.638 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaCTACTTttttattattgatgagtaTAAACTtgacGctttc 678075 678629 R ybeT ybeTp3 Sigma70 678698 678703 CTGACT 20 678672 678677 TATAAA 678667 2.654 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaCTGACTacttttttattattgatgagTATAAActtgAcgctt 678075 678629 R ybeT ybeTp5 Sigma70 678707 678712 GTGCAT 16 678685 678690 TATTAT 678679 2.763 poor homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttaaGTGCATtaactgactactttttTATTATtgatgAgtata 678075 678629 R ybeT ybeTp6 Sigma70 678680 678685 TTGATG 19 678655 678660 CAAAAT 678649 2.93 poor homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTGATGagtataaacttgacgctttCAAAATaaaaaGaaaat 678075 678629 R ybeT ybeTp8 Sigma70 678665 678670 TTGACG 15 678644 678649 GAAAAT 678639 4.13 high homology 5.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaacTTGACGctttcaaaataaaaaGAAAATcgaaGcattc 678731 679438 F ybeU ybeUp1 Sigma70 678584 678589 CTGCAA 20 678610 678615 TACATT 678621 2.604 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattgCTGCAActataaaaattgcgaatataTACATTaatttTttatt 678731 679438 F ybeU ybeUp2 Sigma70 678581 678586 TTGCTG 19 678606 678611 TATATA 678617 2.72 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaTTGCTGcaactataaaaattgcgaaTATATAcattaAttttt 678731 679438 F ybeU ybeUp4 Sigma70 678652 678657 TTTATT 16 678674 678679 TATACT 678685 4.593 high homology 1.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcttTTTATTttgaaagcgtcaagttTATACTcatcaAtaata 680946 682616 R hscC hscCp1 Sigma70 682727 682732 TTACTG 18 682703 682708 TACGCT 682698 2.578 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgatTTACTGgctgatcgtctgaaatttTACGCTtaacAcacgt 680946 682616 R hscC hscCp3 Sigma70 682849 682854 TTGGCG 17 682826 682831 TATACC 682821 2.816 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgggTTGGCGtggaaacacaggggaaaTATACCcaggGtatga 680946 682616 R hscC hscCp4 Sigma70 682705 682710 TTTACG 19 682680 682685 TAAGAT 682675 3.3 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatTTTACGcttaacacacgtcattgatTAAGATcaccAcgcgt 680946 682616 R hscC hscCp5 Sigma70 682732 682737 TTGATT 16 682710 682715 GAAATT 682705 3.513 good homology 7.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttgTTGATTtactggctgatcgtctGAAATTttacGcttaa 683753 684478 R gltL gltLp1 Sigma70 684549 684554 TTGCCG 19 684524 684529 TAGTCT 684519 3.44 good homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgtTTGCCGgatttgtttatttcgttatTAGTCTtagcGcgtcg 687220 688236 R insH insHp1 Sigma70 688293 688298 TTACAT 21 688266 688271 TAAGGA 688261 1.703 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctTTACATttagccaaactaaatgttaccTAAGGAaggtGcgaac 687220 688236 R insH insHp5 Sigma70 688462 688467 TTGGCA 15 688441 688446 TATACA 688435 4.04 high homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caactTTGGCAcatctattgcttTGtTATACAaggcaAaccct 688566 690104 R lnt lntp1 Sigma70 690220 690225 TTACCA 19 690195 690200 GACAGT 690190 2.34 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacggTTACCAgttcaaagtggcgatggccGACAGTcggcGtatta 692754 694178 R miaB miaBp1 Sigma70 694275 694280 TTTACC 19 694250 694255 CATACT 694245 2.07 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggattTTTACCcctaagggctgataacgctCATACTggtcAcaacg 692754 694178 R miaB miaBp4 Sigma70 694223 694228 TTACAC 21 694196 694201 TACTAT 694190 2.833 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTACACtatgcgccctgcattcctggcTACTATttcgcAagagc 692754 694178 R miaB miaBp5 Sigma70 694320 694325 ATGGTC 17 694297 694302 TATGCT 694292 2.866 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtcATGGTCaatcatcctgttagcaaTATGCTttaaGtttac 694324 695499 F ubiF ubiFp2 Sigma70 694135 694140 TTCATC 16 694157 694162 TAATAT 694167 3.053 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcgTTCATCtgacagccccaggtttTAATATggagTttttt 695653 695727 R glnX glnXp1 Sigma70 695782 695787 TTCGAA 20 695756 695761 TATTCA 695751 1.904 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaggTTCGAAtcctcgtaccccagccaattTATTCAagacGcttac 695653 695727 R glnX glnXp2 Sigma70 695943 695948 TTGGTT 15 695922 695927 TAATGA 695917 2.42 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcagTTGGTTagagcacatcactcaTAATGAtgggGtcaca 711261 712025 R ybfF ybfFp2 Sigma70 712157 712162 ATGAAT 16 712135 712140 TAGCGT 712130 2.133 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtatATGAATaaatcccggcagcggaTAGCGTcaagCctggc 711261 712025 R ybfF ybfFp4 Sigma70 712088 712093 TTGCAG 20 712062 712067 CATAAT 712056 2.984 poor homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttgTTGCAGccctgtggcacaatggtcaaCATAATaccctAacccg 711261 712025 R ybfF ybfFp6 Sigma70 712181 712186 CTGAAT 17 712158 712163 TATGAA 712153 3.256 good homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttagCTGAATacaagtcgccaggagtaTATGAAtaaaTcccgg 714635 715129 F ybfP ybfPp1 Sigma70 714387 714392 TTGAGA 16 714409 714414 GAAAAA 714420 2.363 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcggTTGAGAttgttagcgaagttctGAAAAAcgcgtAaacac 714635 715129 F ybfP ybfPp2 Sigma70 714407 714412 CTGAAA 16 714429 714434 TAATAA 714440 2.423 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttCTGAAAaacgcgtaaacacattTAATAAaaaaaGggcgg 714635 715129 F ybfP ybfPp3 Sigma70 714407 714412 CTGAAA 19 714432 714437 TAAAAA 714442 2.91 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttCTGAAAaacgcgtaaacacatttaaTAAAAAaaggGcggtc 714635 715129 F ybfP ybfPp4 Sigma70 714503 714508 TTATCA 20 714529 714534 TATATT 714541 3.144 good homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgcTTATCAggcctacgaggatggtgcaaTATATTgaatttAagcga 716169 717488 R potE potEp2 Sigma70 717598 717603 TTGCAC 19 717573 717578 TATCGA 717567 2.05 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggttTTGCACcggagctgcagggtgtctaTATCGAagaacAtgatg 720279 720956 R kdpE kdpEp2 Sigma70 721093 721098 TTGGAC 16 721071 721076 GATAGT 721066 2.863 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggcTTGGACtggcaatttgtcgggcGATAGTggatGtacac 720279 720956 R kdpE kdpEp3 Sigma70 721144 721149 TTGATA 16 721122 721127 TAAAGA 721117 3.783 good homology 4.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTGATAagtttgctcgcgggaaTAAAGAgtcgGcagta 723630 724202 R kdpC kdpCp1 Sigma70 724360 724365 TTCCCC 20 724334 724339 TATAAA 724327 2.124 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaTTCCCCtggcgttaaaaggcgtgagtTATAAAccgcttAccgct 728357 728563 F ybfA ybfAp1 Sigma70 728211 728216 ATGAAT 16 728233 728238 TAAGCA 728244 1.973 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaggATGAATgtaaataaaccatcaaTAAGCAaaaatAagtgg 728357 728563 F ybfA ybfAp2 Sigma70 728312 728317 TTTCCG 19 728337 728342 TACAAA 728348 2.07 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTTCCGgtgccattcaccgggtagaTACAAAaggggGagaaa 728357 728563 F ybfA ybfAp3 Sigma70 728145 728150 ATGGCA 16 728167 728172 TAATGT 728178 2.613 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATGGCAaaagccatgatttaacTAATGTttagtAttaat 728357 728563 F ybfA ybfAp6 Sigma70 728162 728167 TTAACT 17 728185 728190 TAACTT 728195 3.786 good homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgatTTAACTaatgtttagtattaattTAACTTttgtGtaact 728806 732999 F rhsC rhsCp1 Sigma70 728616 728621 TTGTAT 20 728642 728647 TATTTA 728654 2.204 poor homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGTATcaggaagatgttcagaggaaTATTTAgacatcGttata 728806 732999 F rhsC rhsCp4 Sigma70 728616 728621 TTGTAT 17 728639 728644 GAATAT 728649 4.186 high homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGTATcaggaagatgttcagagGAATATttagAcatcg 728806 732999 F rhsC rhsCp5 Sigma70 728556 728561 TTTATT 17 728579 728584 TACATT 728589 4.366 high homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTTATTgattgctgagttttgaaTACATTgaaaAccgcc 734873 735442 F ybfC ybfCp1 Sigma70 734660 734665 TTCCCA 15 734681 734686 TACAAA 734691 2.88 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgaTTCCCAgtatccagggatggaTACAAAgacaGcaagt 734873 735442 F ybfC ybfCp3 Sigma70 734815 734820 ATGATT 16 734837 734842 TAAGAT 734848 3.243 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatagATGATTtgggtgaaattttagcTAAGATgaaacAgagaa 737315 738076 F ybfD ybfDp1 Sigma70 737268 737273 TTGCTT 20 737294 737299 TACATA 737305 2.364 poor homology 0.00016826 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTGCTTatacatgatcaaatacttctTACATAattaaGgagaa 737315 738076 F ybfD ybfDp2 Sigma70 737233 737238 TTGAGA 15 737254 737259 GAAGCT 737266 2.9 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTGAGAtattccttattacctGAAGCTgtttttTattgc 737315 738076 F ybfD ybfDp3 Sigma70 737199 737204 TTGTAC 16 737221 737226 TATGTT 737232 2.923 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGTACtaaataattcgcatttTATGTTtaaaaAttgag 737315 738076 F ybfD ybfDp4 Sigma70 737248 737253 TTACCT 19 737273 737278 TATACA 737284 2.98 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTACCTgaagctgttttttattgctTATACAtgatcAaatac 737315 738076 F ybfD ybfDp5 Sigma70 737069 737074 TTAATA 18 737093 737098 TATTCA 737104 3.148 good homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctaTTAATAttttaacgaatgataaggTATTCAaggcaGggtta 740298 741779 R dtpD dtpDp2 Sigma70 741892 741897 ATGCAA 21 741865 741870 TAATCA 741859 2.173 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttATGCAAtcagacagcatattgcataaaTAATCAgatctGtatca 740298 741779 R dtpD dtpDp3 Sigma70 741892 741897 ATGCAA 17 741869 741874 TAAATA 741863 3.116 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttATGCAAtcagacagcatattgcaTAAATAatcagAtctgt 740298 741779 R dtpD dtpDp5 Sigma70 741874 741879 TTGCAT 18 741850 741855 CAAAGT 741845 3.418 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcataTTGCATaaataatcagatctgtatCAAAGTtttaActtta 740298 741779 R dtpD dtpDp6 Sigma70 741874 741879 TTGCAT 15 741853 741858 TATCAA 741846 3.55 good homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcataTTGCATaaataatcagatctgTATCAAagttttAacttt 740298 741779 R dtpD dtpDp7 Sigma70 741925 741930 TTTATA 15 741904 741909 TAATGT 741897 3.77 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattgTTTATAtcatcacgcttcagcTAATGTatatttAtgcaa 740298 741779 R dtpD dtpDp8 Sigma70 741925 741930 TTTATA 20 741899 741904 TATATT 741893 3.894 good homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattgTTTATAtcatcacgcttcagctaatgTATATTtatgcAatcag 745946 746992 R abrB abrBp1 Sigma70 747053 747058 TTTCCT 21 747026 747031 TATCGA 747019 1.763 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTTCCTggcccagctttctttatgctgTATCGAtacaccAaagag 745946 746992 R abrB abrBp2 Sigma70 747082 747087 TTTCCC 18 747058 747063 TATTTT 747052 3.058 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctgatTTTCCCcttttccttgattgcTGtTATTTTttcctGgccca 745946 746992 R abrB abrBp3 Sigma70 747160 747165 TTTTAA 18 747136 747141 TACCAT 747131 3.128 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgctTTTTAAgattaactataactgattTACCATgatgCccttt 745946 746992 R abrB abrBp4 Sigma70 747122 747127 TTGCCG 21 747095 747100 GAAAAT 747089 3.703 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccctTTGCCGccggaaagggcatctctttcaGAAAATtgctgAttttc 745946 746992 R abrB abrBp5 Sigma70 747056 747061 TTTTTT 17 747033 747038 TATGCT 747027 3.916 good homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaTTTTTTcctggcccagctttcttTATGCTgtatcGataca 747144 748205 R ybgO ybgOp1 Sigma70 748433 748438 CTGAAA 20 748407 748412 GACCAT 748401 1.404 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacaCTGAAAaatcctaccgcgtattatctGACCATtgcctAtctgg 747144 748205 R ybgO ybgOp2 Sigma70 748253 748258 ATGACG 16 748231 748236 GACAAT 748226 2.153 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgcATGACGacgctcaactgcagcgGACAATgccgTttaca 747144 748205 R ybgO ybgOp3 Sigma70 748439 748444 CTGACA 18 748415 748420 TATTAT 748408 4.398 high homology 5.66E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaCTGACActgaaaaatcctaccgcgTATTATctgaccAttgcc 751452 752018 R ybgD ybgDp1 Sigma70 752101 752106 TTTTAA 20 752075 752080 TAATCA 752069 1.684 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTTTAAgcaaaactaaaaactagcaaTAATCAaatacGatatt 751452 752018 R ybgD ybgDp2 Sigma70 752089 752094 CTAAAA 16 752067 752072 TACGAT 752061 2.073 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaCTAAAAactagcaataatcaaaTACGATattctGgcgta 751452 752018 R ybgD ybgDp3 Sigma70 752236 752241 TTAAAA 19 752211 752216 TATAAC 752205 2.45 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcaaTTAAAAacttcatggtagtcgcattTATAACcctatGaaaat 751452 752018 R ybgD ybgDp4 Sigma70 752089 752094 CTAAAA 21 752062 752067 TATTCT 752056 2.813 poor homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaCTAAAAactagcaataatcaaatacgaTATTCTggcgtAgctat 751452 752018 R ybgD ybgDp5 Sigma70 752196 752201 ATGACG 18 752172 752177 TATTTT 752167 3.068 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaATGACGtctatctatacccccctaTATTTTattcAtcata 751452 752018 R ybgD ybgDp6 Sigma70 752196 752201 ATGACG 16 752174 752179 TATATT 752167 3.233 good homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaATGACGtctatctataccccccTATATTttattcAtcata 751452 752018 R ybgD ybgDp7 Sigma70 752121 752126 TTTAAT 17 752098 752103 TAAGCA 752092 3.416 good homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTTAATaaaactaacaatattttTAAGCAaaactAaaaac 773419 773532 F ybgT ybgTp1 Sigma70 773250 773255 ATGCAA 19 773275 773280 TAACGT 773285 2.61 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgggATGCAActtccagccagctgacgctTAACGTcatgAcctgg 773419 773532 F ybgT ybgTp2 Sigma70 773376 773381 TTGAAC 17 773399 773404 TACTAA 773410 3.816 good homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTGAACgtaacacccactctctgTACTAAgtaagGagcta 773532 773825 F ybgE ybgEp3 Sigma70 773376 773381 TTGAAC 17 773399 773404 TACTAA 773410 3.816 good homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTGAACgtaacacccactctctgTACTAAgtaagGagcta 773975 774379 F ybgC ybgCp1 Sigma70 773846 773851 ATTATG 16 773868 773873 TAAATT 773879 1.713 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaATTATGggccgctccaggcccaTAAATTtttacGctccc 773975 774379 F ybgC ybgCp3 Sigma70 773764 773769 TTTTTT 16 773786 773791 TATTGT 773796 2.823 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaTTTTTTgcccattgcttgccgaTATTGTtctcAttgtc 773975 774379 F ybgC ybgCp5 Sigma70 773899 773904 TTCCCA 17 773922 773927 TATAGT 773932 5.196 high homology 3.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctcaTTCCCAaacctcaatcgcgcgcgTATAGTagcaGcgttt 776963 778255 F tolB tolBp1 Sigma70 776902 776907 TTTAGT 20 776928 776933 TATCGT 776939 2.114 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtatTTTAGTttgttaacattctgctaaatTATCGTgggccAtcggt 776963 778255 F tolB tolBp2 Sigma70 776885 776890 CTGGTA 21 776912 776917 TAACAT 776924 2.253 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gggttCTGGTAgttttgtgtattttagttTGtTAACATtctgctAaatta 776963 778255 F tolB tolBp4 Sigma70 776902 776907 TTTAGT 15 776923 776928 TAAATT 776934 3.14 good homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgtatTTTAGTttgttaacattcTGcTAAATTatcgtGggcca 776963 778255 F tolB tolBp6 Sigma70 776725 776730 TTGTCA 18 776749 776754 TAAACT 776760 5.258 high homology 8.63E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcactTTGTCAggctgcgttggcagcagcTAAACTtgcgaAgatcc 780291 780366 F valZ valZp1 Sigma70 780119 780124 TTCGAA 21 780146 780151 TAACAT 780157 3.053 poor homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaggTTCGAAtcctgcacgacccaccagtttTAACATcgaagAcagat 780592 780667 F lysZ lysZp1 Sigma70 780423 780428 TTCGAA 21 780450 780455 TAACAT 780460 3.053 poor homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaggTTCGAAtcctgcacgacccaccagtttTAACATcaaaCtcaga 783105 784046 R zitB zitBp1 Sigma70 784104 784109 TTCACT 21 784077 784082 TAAAGT 784071 4.023 high homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTCACTtctaaaagcagtatgatgtcaTAAAGTtaagtGagaat 783105 784046 R zitB zitBp2 Sigma70 784112 784117 TTTAAT 19 784087 784092 TATGAT 784081 4.23 high homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccctTTTAATttttcacttctaaaagcagTATGATgtcatAaagtt 784160 784540 R ybgS ybgSp3 Sigma70 784657 784662 TTTCAA 19 784632 784637 TAACCT 784626 3.41 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTTCAAgattctctgctgcgtttcaTAACCTggctgAaatct 784160 784540 R ybgS ybgSp5 Sigma70 784624 784629 CTGAAA 16 784602 784607 TATATT 784596 3.863 good homology 7.34E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggCTGAAAtcttaaaccaatgcctTATATTcacctGcaaat 784160 784540 R ybgS ybgSp7 Sigma70 784719 784724 TTGTCG 19 784694 784699 TACAAT 784688 3.89 good homology 6.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagaTTGTCGcgaaaaacgagatctctccTACAATttctaActgta 787020 788060 R galM galMp1 Sigma70 788207 788212 ATGACC 20 788181 788186 TATCGT 788174 1.924 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgcATGACCggcggcggatttggcggctgTATCGTcgcgctGatccc 787020 788060 R galM galMp3 Sigma70 788285 788290 TTCGAA 18 788261 788266 GACACT 788255 2.698 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgatTTCGAAatcaccgtgccgcaaattGACACTctggtAgaaat 791539 793011 R modF modFp1 Sigma70 793234 793239 TTGAGC 21 793207 793212 TATTAA 793202 2.433 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTGAGCgcggcgcagagcagtgcgaagTATTAAtggcGctacc 793996 794145 F ybhT ybhTp1 Sigma70 793940 793945 GTGCTT 16 793962 793967 TAGAAT 793974 2.083 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaGTGCTTttctgtgcttagcggtTAGAATagtctcAtgact 793996 794145 F ybhT ybhTp3 Sigma70 793866 793871 ATAACA 18 793890 793895 TATTGT 793901 2.958 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgcATAACAatgtcctggcaaaagtctTATTGTgacggAaaacg 793996 794145 F ybhT ybhTp4 Sigma70 793944 793949 TTTTCT 17 793967 793972 TAGTCT 793977 3.476 good homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgcTTTTCTgtgcttagcggttagaaTAGTCTcatgActata 796836 797654 R ybhA ybhAp1 Sigma70 797718 797723 TTGTCC 16 797696 797701 TACCAT 797691 2.733 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaattTTGTCCgatagtggtatcggtgTACCATtcgcGcagac 796836 797654 R ybhA ybhAp5 Sigma70 797733 797738 TTAAAA 15 797712 797717 GATAGT 797705 3.6 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTAAAAcgcagaattttgtccGATAGTggtatcGgtgta 796836 797654 R ybhA ybhAp6 Sigma70 797845 797850 TTGCTG 19 797820 797825 TAAACT 797815 4.4 high homology 2.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaatTTGCTGgctctcagggctggcgataTAAACTgtttGcttca 796836 797654 R ybhA ybhAp7 Sigma70 797845 797850 TTGCTG 17 797822 797827 TATAAA 797815 4.576 high homology 0.000141955 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaatTTGCTGgctctcagggctggcgaTATAAActgtttGcttca 796836 797654 R ybhA ybhAp10 Sigma70 797793 797798 TTGCAT 21 797766 797771 TAAAAT 797760 5.573 high homology 2.82E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcctTTGCATttagcaactgactgtaacagcTAAAATtagtcGctttt 798845 799798 R ybhD ybhDp2 Sigma70 799961 799966 TTAAAA 16 799939 799944 TATGGT 799932 3.843 good homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTAAAAacataacttattgcgaTATGGTtacattAagggc 798845 799798 R ybhD ybhDp3 Sigma70 799891 799896 TTAATA 17 799868 799873 TAAGTT 799862 4.006 good homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgaTTAATAacattttttcattaattTAAGTTggctaAatgca 798845 799798 R ybhD ybhDp5 Sigma70 799874 799879 TTAATT 19 799849 799854 TAAAAT 799843 4.35 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTAATTtaagttggctaaatgcagtTAAAATttttaAcggcc 799982 801034 F ybhH ybhHp1 Sigma70 799852 799857 TTAACT 19 799877 799882 TAATGA 799887 2.07 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaattTTAACTgcatttagccaacttaaatTAATGAaaaaAtgtta 799982 801034 F ybhH ybhHp3 Sigma70 799925 799930 TTGCCC 20 799951 799956 TAAGTT 799962 2.804 poor homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgctTTGCCCttaatgtaaccatatcgcaaTAAGTTatgttTttaaa 799982 801034 F ybhH ybhHp5 Sigma70 799773 799778 TTCATA 17 799796 799801 CATTAT 799808 3.306 good homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgccTTCATActtgataattcatgcttCATTATtactccGgaaaa 799982 801034 F ybhH ybhHp6 Sigma70 799850 799855 TTTTAA 16 799872 799877 TAAATT 799883 3.363 good homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTTTAActgcatttagccaactTAAATTaatgaAaaaat 799982 801034 F ybhH ybhHp7 Sigma70 799879 799884 ATGAAA 21 799906 799911 TAAAGT 799917 4.053 high homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaATGAAAaaatgttattaatcgttgagcTAAAGTcattaGagatg 801110 802543 F ybhI ybhIp2 Sigma70 801031 801036 CTGAAA 20 801057 801062 GACAAT 801068 2.464 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttccCTGAAAaaattcgttgtcaggataagGACAATcaataAaggac 801110 802543 F ybhI ybhIp3 Sigma70 800982 800987 CTGTTA 18 801006 801011 TATTTT 801017 2.518 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcatCTGTTAttcggacgaccagaaaaaTATTTTccggtGaagtt 802726 804987 F ybhJ ybhJp1 Sigma70 802635 802640 TTGTCG 18 802659 802664 TATTTA 802669 2.268 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgcTTGTCGccttcctgcaactcgaatTATTTAgagtAtatcc 802726 804987 F ybhJ ybhJp2 Sigma70 802520 802525 CTGATC 19 802545 802550 TATTCT 802555 2.6 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatgCTGATCggctggaacatgctgtaaaTATTCTcgtcAtactt 802726 804987 F ybhJ ybhJp3 Sigma70 802585 802590 TTCGCT 21 802612 802617 TAAGCT 802623 2.793 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTCGCTcaccccagtcacttacttatgTAAGCTcctggGgattc 802726 804987 F ybhJ ybhJp4 Sigma70 802657 802662 ATTATT 15 802678 802683 TATTAT 802690 2.96 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgaATTATTtagagtatatccattTATTATctttctGcgcac 806656 807132 R ybhB ybhBp2 Sigma70 807285 807290 TTACCT 15 807264 807269 TATTCT 807258 4.04 high homology 6.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTACCTgatgccgccctatatTATTCTcccgcAacagt 806656 807132 R ybhB ybhBp3 Sigma70 807290 807295 CTGATT 17 807267 807272 TATTAT 807260 4.586 high homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaCTGATTtacctgatgccgccctaTATTATtctcccGcaaca 819107 819811 F ybhL ybhLp1 Sigma70 819011 819016 TTCACC 16 819033 819038 TACGCT 819044 2.453 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaatTTCACCgctcagtacatacgttTACGCTgcgtcGatgca 819107 819811 F ybhL ybhLp4 Sigma70 819045 819050 ATGCAC 18 819069 819074 TATCCT 819079 2.798 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtcgATGCACagcctcatcattttgcagTATCCTtaagAtattc 819107 819811 F ybhL ybhLp5 Sigma70 819063 819068 TTGCAG 20 819089 819094 TATCTT 819100 3.104 poor homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTGCAGtatccttaagatattccttaTATCTTcaggaGatcgt 820016 820729 F ybhM ybhMp1 Sigma70 819973 819978 TTGATG 20 819999 820004 TAAGGA 820010 1.884 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTGATGgtgaatattaatattttttcTAAGGAtaactAaaaga 820016 820729 F ybhM ybhMp2 Sigma70 819950 819955 TTGTAT 19 819975 819980 GATGGT 819985 2.6 poor homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtattTTGTATgcgtggttttaaatttattGATGGTgaatAttaat 820016 820729 F ybhM ybhMp3 Sigma70 819921 819926 TTTTCT 19 819946 819951 TATTTT 819956 2.74 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcgTTTTCTgtatccataaatgcaaaagTATTTTgtatGcgtgg 820016 820729 F ybhM ybhMp4 Sigma70 819950 819955 TTGTAT 15 819971 819976 TATTGA 819982 2.92 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtattTTGTATgcgtggttttaaattTATTGAtggtgAatatt 820016 820729 F ybhM ybhMp6 Sigma70 819963 819968 TTTAAA 15 819984 819989 TATTAA 819995 3.54 good homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTTAAAtttattgatggtgaaTATTAAtatttTttcta 820016 820729 F ybhM ybhMp7 Sigma70 819963 819968 TTTAAA 21 819990 819995 TATTTT 820001 3.993 good homology 5.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTTAAAtttattgatggtgaatattaaTATTTTttctaAggata 820765 821721 R ybhN ybhNp2 Sigma70 821929 821934 TTGTCA 15 821908 821913 CATGCT 821902 2.54 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaTTGTCAgcaggtggatgaaacCATGCTgcccaAacgca 824225 825331 R ybhR ybhRp1 Sigma70 825567 825572 CTGCCG 20 825541 825546 TATTTT 825536 1.854 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttCTGCCGtcgattatgctttccggcttTATTTTtcagAtcgac 824225 825331 R ybhR ybhRp2 Sigma70 825522 825527 ATGCCC 21 825495 825500 TACATT 825488 2.163 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagtATGCCCgcggtgatccgcgcggtgacgTACATTattcccGctcgt 824225 825331 R ybhR ybhRp3 Sigma70 825462 825467 CTGCAA 17 825439 825444 GAATAT 825434 3.296 good homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaccCTGCAAagcctgttcctcgccggGAATATtccaGtggtg 830095 831459 F rhlE rhlEp1 Sigma70 829943 829948 TTTAGC 15 829964 829969 GATAAT 829974 2.28 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTTAGCaacgccagtcacaggGATAATttatGcgctg 830095 831459 F rhlE rhlEp2 Sigma70 829944 829949 TTAGCA 16 829966 829971 TAATTT 829976 2.723 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaattTTAGCAacgccagtcacagggaTAATTTatgcGctgcg 830095 831459 F rhlE rhlEp3 Sigma70 829969 829974 TTTATG 20 829995 830000 TACACT 830006 3.074 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gataaTTTATGcgctgcgtcacaaaaacTGcTACACTccgctCcctca 830095 831459 F rhlE rhlEp4 Sigma70 829878 829883 TTCTTA 17 829901 829906 GATTAT 829913 3.176 good homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccaTTCTTAatcaaatgattgattaaGATTATgactccAtaggg 831691 832173 R ybiA ybiAp2 Sigma70 832294 832299 ATGCCA 20 832268 832273 TATAAA 832262 2.784 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaATGCCAtgagaaaacctgaaatactgTATAAAcagccAatatt 831691 832173 R ybiA ybiAp3 Sigma70 832294 832299 ATGCCA 15 832273 832278 TACTGT 832268 2.9 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaATGCCAtgagaaaacctgaaaTACTGTataaAcagcc 831691 832173 R ybiA ybiAp7 Sigma70 832386 832391 CTGCCG 17 832363 832368 TAAAGT 832357 3.676 good homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcatCTGCCGctgcggcgcacggggaaTAAAGTcggggAtctgt 831691 832173 R ybiA ybiAp9 Sigma70 832279 832284 CTGAAA 18 832255 832260 TATTGT 832250 3.938 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacCTGAAAtactgtataaacagccaaTATTGTggcaTttttc 835574 836659 F ybiC ybiCp1 Sigma70 835512 835517 TTCCCA 16 835534 835539 TAAAAA 835544 3.073 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaccTTCCCAcgcccggcgtgcagcaTAAAAAtacaAcaaac 836888 837148 R ybiJ ybiJp1 Sigma70 837256 837261 TTTGAA 20 837230 837235 GATTTT 837223 1.664 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTTGAAcaaggcggtcaattctcttcGATTTTatctctCgtaaa 836888 837148 R ybiJ ybiJp2 Sigma70 837198 837203 ATCACA 19 837173 837178 TATACA 837166 1.94 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactcATCACAtcgacgaaacaacgtcactTATACAaaaatcAcctgc 836888 837148 R ybiJ ybiJp3 Sigma70 837238 837243 TTCTCT 16 837216 837221 TAAAAA 837210 2.293 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcaaTTCTCTtcgattttatctctcgTAAAAAaacgtGatact 836888 837148 R ybiJ ybiJp4 Sigma70 837349 837354 TTTAAC 21 837322 837327 TATAAA 837317 3.033 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgccTTTAACgctgctgtgactgccacgcggTATAAAacaaGttcat 836888 837148 R ybiJ ybiJp5 Sigma70 837228 837233 TTTTAT 17 837205 837210 GATACT 837200 3.816 good homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgaTTTTATctctcgtaaaaaaacgtGATACTcatcAcatcg 837413 837679 R ybiI ybiIp1 Sigma70 837812 837817 GTGAAG 16 837790 837795 TAATCT 837784 2.003 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaaaGTGAAGagatcctgtcgctgctTAATCTttatcAtaatc 837413 837679 R ybiI ybiIp2 Sigma70 837739 837744 CTGCCC 20 837713 837718 TACACT 837707 2.184 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgaaCTGCCCgagttcgtccctggattagcTACACTtaactGtacaa 837413 837679 R ybiI ybiIp3 Sigma70 837912 837917 TTTATG 21 837885 837890 GATGAT 837879 2.233 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaTTTATGtggatccagtcgatgatccgcGATGATaaaaaGcgcgc 837413 837679 R ybiI ybiIp4 Sigma70 837801 837806 CTGTCG 17 837778 837783 TAATCT 837772 2.896 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agatcCTGTCGctgcttaatctttatcaTAATCTgctgcGggaat 841019 841279 R mcbA mcbAp1 Sigma70 841464 841469 TTAACA 21 841437 841442 CATCAT 841432 2.123 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaccTTAACAtggctatggtttatggcaattCATCATaaaaAtcagc 841019 841279 R mcbA mcbAp2 Sigma70 841476 841481 TTCCCC 16 841454 841459 TATGGT 841448 2.463 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTCCCCaaaaccttaacatggcTATGGTttatgGcaatt 841019 841279 R mcbA mcbAp3 Sigma70 841414 841419 ATGTCA 18 841390 841395 TAAAAA 841383 2.628 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcATGTCAttgatttgtcttattttgTAAAAAtatatcGttcaa 841019 841279 R mcbA mcbAp4 Sigma70 841393 841398 TTGTAA 19 841368 841373 TAAGCA 841361 2.69 poor homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTGTAAaaatatatcgttcaaaaaaTAAGCAcatctcTgtcaa 841019 841279 R mcbA mcbAp5 Sigma70 841408 841413 TTGATT 20 841382 841387 TATCGT 841376 3.874 good homology 3.50E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcaTTGATTtgtcttattttgtaaaaataTATCGTtcaaaAaataa 841555 842481 F rlmF rlmFp3 Sigma70 841481 841486 ATGATA 16 841503 841508 TACCCT 841514 2.653 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaATGATAaacgcagccagatattTACCCTgtcgcGttatg 841555 842481 F rlmF rlmFp4 Sigma70 841440 841445 ATGAAT 21 841467 841472 TAAGGT 841478 3.043 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttatgATGAATtgccataaaccatagccaTGtTAAGGTtttggGgaatg 841555 842481 F rlmF rlmFp5 Sigma70 841501 841506 TTTACC 17 841524 841529 TATCTT 841535 3.456 good homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTTACCctgtcgcgttatgcgggTATCTTacgccGctgct 841555 842481 F rlmF rlmFp7 Sigma70 841413 841418 ATGACA 17 841436 841441 TATGAT 841447 4.966 high homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaATGACAtgcataatgctgattttTATGATgaattGccata 842478 844703 R ybiO ybiOp2 Sigma70 844764 844769 TTTAAA 20 844738 844743 TATACT 844732 4.784 high homology 5.03E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctcaTTTAAAatcgcccctcctccagcatcTATACTtatctTtttgc 848433 849320 R rhtA rhtAp1 Sigma70 849486 849491 TTCCCT 21 849459 849464 TAATCA 849454 2.143 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgttTTCCCTgtcattcatccagattattccTAATCAccagActaat 848433 849320 R rhtA rhtAp8 Sigma70 849556 849561 TTTCCA 16 849534 849539 TAAATT 849527 3.853 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacgTTTCCAtacaccgctatccatcTAAATTtaaatcActttt 850237 851820 R ybiP ybiPp1 Sigma70 851895 851900 TTTCCA 21 851868 851873 TATTGA 851862 2.463 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accccTTTCCActcttcacgcactcttgcaggTATTGAcccttGacgcc 850237 851820 R ybiP ybiPp4 Sigma70 851966 851971 TTGACC 17 851943 851948 TATCTT 851937 4.466 high homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtagTTGACCtgaacggcggctcgctcTATCTTcttgcAgccct 851894 852163 F yliL yliLp1 Sigma70 851811 851816 TTAAAT 16 851833 851838 TAACAA 851844 2.273 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagggTTAAATtcatatgccactatcgTAACAAacgccAtgtgc 851894 852163 F yliL yliLp3 Sigma70 851804 851809 TTGAGG 18 851828 851833 TATCGT 851839 3.278 good homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGAGGgttaaattcatatgccacTATCGTaacaaAcgcca 852175 852263 R rybA rybAp7 Sigma70 852316 852321 TTAACG 17 852293 852298 TAATAT 852287 4.516 high homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTAACGttttagcaatagctataTAATATagcctGtgcta 852175 852263 R rybA rybAp8 Sigma70 852316 852321 TTAACG 15 852295 852300 TATAAT 852290 4.53 high homology 1.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTAACGttttagcaatagctaTATAATatagCctgtg 852406 852873 F mntR mntRp1 Sigma70 852160 852165 TTAACC 21 852187 852192 TAAACA 852198 2.353 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaTTAACCgtactttaaagggagaatgacTAAACAcgcgcAtacac 852406 852873 F mntR mntRp4 Sigma70 852326 852331 TTGTAC 16 852348 852353 TACAAT 852358 3.883 good homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attttTTGTACcttcgcaactctggttTACAATgtgcGcacga 852406 852873 F mntR mntRp5 Sigma70 852269 852274 TTACAT 19 852294 852299 TATTAT 852306 4.1 high homology 4.63E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTACATacagatatagcacaggctaTATTATatagctAttgct 852406 852873 F mntR mntRp6 Sigma70 852269 852274 TTACAT 17 852292 852297 TATATT 852303 4.936 high homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTACATacagatatagcacaggcTATATTatataGctatt 855186 856778 F ybiT ybiTp1 Sigma70 854987 854992 CTGGCA 20 855013 855018 TAGAGT 855024 2.004 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgcCTGGCAggccattgggttgagaatatTAGAGTattggAagcgc 855186 856778 F ybiT ybiTp2 Sigma70 854950 854955 TTTCAA 19 854975 854980 GAGATT 854985 2.03 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgtTTTCAAtttcatattcatgttaagcGAGATTttgtGcctgg 855186 856778 F ybiT ybiTp3 Sigma70 854950 854955 TTTCAA 21 854977 854982 GATTTT 854989 2.483 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgtTTTCAAtttcatattcatgttaagcgaGATTTTgtgcctGgcagg 857019 858284 R ybiU ybiUp1 Sigma70 858504 858509 ATGATA 19 858479 858484 GAATGT 858473 1.88 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taccgATGATAataatcatgaaggcgcgctGAATGTgattcAggcgg 857019 858284 R ybiU ybiUp2 Sigma70 858383 858388 CTGTAC 15 858362 858367 TAAACT 858355 2.53 poor homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatcCTGTACatcacatcaaatcatTAAACTtgcattAactta 857019 858284 R ybiU ybiUp3 Sigma70 858363 858368 TTAAAC 17 858340 858345 TAACTT 858334 3.156 good homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTAAACttgcattaacttatttaTAACTTatattGtcaca 857019 858284 R ybiU ybiUp6 Sigma70 858357 858362 TTGCAT 16 858335 858340 TATATT 858329 5.043 high homology 7.89E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaacTTGCATtaacttatttataactTATATTgtcacAtgcaa 857019 858284 R ybiU ybiUp7 Sigma70 858357 858362 TTGCAT 18 858333 858338 TATTGT 858327 5.118 high homology 1.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaacTTGCATtaacttatttataacttaTATTGTcacatGcaaat 858436 859251 R ybiV ybiVp1 Sigma70 859311 859316 TTTGTG 19 859286 859291 TACACT 859280 2.57 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tataaTTTGTGctctgcgtcacattgttatTACACTgttacGgtttc 858436 859251 R ybiV ybiVp3 Sigma70 859340 859345 TTTCAT 20 859314 859319 TAATTT 859307 2.864 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcaaTTTCATccttactttcattcgaaataTAATTTgtgctcTgcgtc 858436 859251 R ybiV ybiVp4 Sigma70 859353 859358 TTCACA 16 859331 859336 TACTTT 859325 3.043 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTCACAtcatcaatttcatcctTACTTTcattcGaaata 858436 859251 R ybiV ybiVp5 Sigma70 859340 859345 TTTCAT 18 859316 859321 TATAAT 859311 5.218 high homology 7.81E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcaaTTTCATccttactttcattcgaaaTATAATttgtGctctg 859397 861829 R ybiW ybiWp1 Sigma70 862017 862022 TTGCCG 20 861991 861996 GAAATT 861985 2.564 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgattTTGCCGccgacgagctgcacgttggcGAAATTcatttTctgcc 862865 863527 F fsaA fsaAp1 Sigma70 862821 862826 GTGATA 20 862847 862852 TACATT 862858 1.744 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcccGTGATAgtctacattcagacaaaaagTACATTttgagGatggt 862865 863527 F fsaA fsaAp2 Sigma70 862805 862810 TTCAGA 19 862830 862835 TACATT 862841 2.57 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactgTTCAGAgagttttcccgtgatagtcTACATTcagacAaaaag 862865 863527 F fsaA fsaAp3 Sigma70 862788 862793 TTGATG 15 862809 862814 GAGAGT 862821 2.72 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagaTTGATGtgcgtcaactgttcaGAGAGTtttcccGtgata 862865 863527 F fsaA fsaAp5 Sigma70 862761 862766 TTAAAA 17 862784 862789 TAGATT 862795 4.506 high homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTAAAAtactttcgaatgaaagtTAGATTgatgtGcgtca 863603 864352 R moeB moeBp1 Sigma70 864473 864478 TTCACA 15 864452 864457 TAGCCT 864446 3.03 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggTTCACAtatatttagctccttTAGCCTcggcaActgct 872202 874550 F yliE yliEp1 Sigma70 872095 872100 TTTCTG 19 872120 872125 TAATTT 872131 2.25 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaacTTTCTGctgattttgtagaatcgggTAATTTggttaAaaagc 872202 874550 F yliE yliEp3 Sigma70 872107 872112 TTGTAG 16 872129 872134 TAAAAA 872140 3.013 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGTAGaatcgggtaatttggtTAAAAAgccgcAgcaag 872202 874550 F yliE yliEp4 Sigma70 871988 871993 TTTACG 15 872009 872014 GAAAAT 872020 3.13 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatggTTTACGcgatgcgctggatccGAAAATtaaagGatagt 872202 874550 F yliE yliEp5 Sigma70 872038 872043 TTGCTT 21 872065 872070 GAAATT 872075 3.243 good homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTGCTTgaaagggtaatcacctcacagGAAATTattgCcctaa 872202 874550 F yliE yliEp6 Sigma70 872155 872160 TTGCAG 20 872181 872186 TATTTT 872192 3.604 good homology 6.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTGCAGcggcacagcgttcagatagtTATTTTgttaaAtgtat 872202 874550 F yliE yliEp7 Sigma70 872124 872129 TTGGTT 17 872147 872152 GACAAT 872157 4.176 high homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTGGTTaaaaagccgcagcaaggGACAATttttGcagcg 877471 877854 F bssR bssRp1 Sigma70 877277 877282 TTACAG 16 877299 877304 GATTCT 877310 2.183 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcagTTACAGgaaaggtcagggcaggGATTCTacagaGttctg 877471 877854 F bssR bssRp2 Sigma70 877410 877415 TTGCTC 15 877431 877436 TATTTA 877442 2.24 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTGCTCaaaaaatagccatacTATTTAattgcAacaag 877471 877854 F bssR bssRp3 Sigma70 877246 877251 TTACTT 18 877270 877275 TATTCA 877281 2.658 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggagTTACTTtgctcatagcttaaaaaaTATTCAgttacAggaaa 877471 877854 F bssR bssRp4 Sigma70 877340 877345 TTCGCT 19 877365 877370 TAAATT 877376 2.93 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctcaTTCGCTggcggaggcgaaggaaatgTAAATTttgttAattcg 877471 877854 F bssR bssRp5 Sigma70 877438 877443 TTGCAA 15 877459 877464 GAGGAT 877469 3.24 good homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTGCAAcaaggctgggaagagGAGGATcgaaGtatgt 877471 877854 F bssR bssRp7 Sigma70 877371 877376 TTGTTA 17 877394 877399 GATCCT 877405 3.656 good homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaattTTGTTAattcggcgtgaagaattGATCCTggacaGcattt 877965 879080 F yliI yliIp1 Sigma70 877754 877759 CTGTTA 16 877776 877781 TAAGCT 877787 2.163 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccgaCTGTTAttaccgtcaacgccgaTAAGCTtgaaaAttgtc 877965 879080 F yliI yliIp2 Sigma70 877788 877793 TTGTCT 15 877809 877814 GAGTAT 877820 2.63 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTGTCTgatgagcttaacgctGAGTATccagaGcctgc 877965 879080 F yliI yliIp3 Sigma70 877906 877911 ATGAAT 20 877932 877937 TACGCT 877942 2.684 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATGAATttgttatctcctccactgacTACGCTttaaGccaga 877965 879080 F yliI yliIp4 Sigma70 877788 877793 TTGTCT 18 877812 877817 TATCCA 877824 2.908 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTGTCTgatgagcttaacgctgagTATCCAgagcctGcagaa 877965 879080 F yliI yliIp7 Sigma70 877760 877765 TTACCG 17 877783 877788 GAAAAT 877794 3.566 good homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaTTACCGtcaacgccgataagcttGAAAATtgtctGatgag 884169 884453 R ybjH ybjHp1 Sigma70 884504 884509 CTGAAT 19 884479 884484 GAAATT 884473 2.09 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcCTGAATgaaggctgcataattcgcgGAAATTaacccGctgca 884539 885354 R ybjI ybjIp1 Sigma70 885447 885452 ATGCTG 17 885424 885429 TATTCT 885419 3.756 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcaATGCTGgttgtactggcgctggtTATTCTcgcgGctatt 886646 887182 F ybjK ybjKp1 Sigma70 886552 886557 TTTACG 19 886577 886582 TAAGAA 886588 1.92 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaTTTACGgtcatagatcacgtcaaaaTAAGAAgagggAagaca 886646 887182 F ybjK ybjKp2 Sigma70 886418 886423 TTTCAG 15 886439 886444 GAATAT 886450 2.36 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcccaTTTCAGcgatcgagacagagaGAATATcgcggAtagca 886646 887182 F ybjK ybjKp3 Sigma70 886481 886486 TTAACA 16 886503 886508 GAACAT 886514 2.553 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaTTAACAggcctggcaaaaagaaGAACATaaacaGcgccc 886646 887182 F ybjK ybjKp4 Sigma70 886481 886486 TTAACA 21 886508 886513 TAAACA 886520 3.273 good homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaTTAACAggcctggcaaaaagaagaacaTAAACAgcgcccAggttc 886646 887182 F ybjK ybjKp5 Sigma70 886530 886535 TTTCAA 18 886554 886559 TACGGT 886565 3.398 good homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTTCAAtgcattacgtgaagaattTACGGTcatagAtcacg 887357 889042 R ybjL ybjLp2 Sigma70 889150 889155 TTACTA 19 889125 889130 GAATCT 889118 2.28 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttactTTACTAtcgtttaggtgcgctgaatGAATCTgcgcccTgaatt 887357 889042 R ybjL ybjLp6 Sigma70 889176 889181 TTACAC 21 889149 889154 TACTAT 889143 2.833 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTACACtagtaaaatatattgttacttTACTATcgtttAggtgc 887357 889042 R ybjL ybjLp7 Sigma70 889114 889119 CTGAAT 15 889093 889098 TATCGT 889087 3 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgccCTGAATtctggtaaaaaacatTATCGTaaattAccatt 887357 889042 R ybjL ybjLp8 Sigma70 889114 889119 CTGAAT 20 889088 889093 TAAATT 889083 3.054 poor homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgccCTGAATtctggtaaaaaacattatcgTAAATTaccaTttctt 887357 889042 R ybjL ybjLp9 Sigma70 889273 889278 TTTTTC 17 889250 889255 TAAGAT 889243 3.106 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacaTTTTTCgccagtgtggcgttcagTAAGATaaagccGcttcg 887357 889042 R ybjL ybjLp10 Sigma70 889192 889197 TTGATA 16 889170 889175 TAGTAA 889164 3.153 good homology 7.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccgTTGATAcctaatgtgattacacTAGTAAaatatAttgtt 887357 889042 R ybjL ybjLp11 Sigma70 889127 889132 ATGAAT 18 889103 889108 TAAAAA 889097 3.388 good homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gctgaATGAATctgcgccctgaattcTGgTAAAAAacattAtcgta 887357 889042 R ybjL ybjLp12 Sigma70 889192 889197 TTGATA 19 889167 889172 TAAAAT 889161 5.66 high homology 2.07E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccgTTGATAcctaatgtgattacactagTAAAATatattGttact 889312 889689 F ybjM ybjMp1 Sigma70 889205 889210 ATGAAT 15 889226 889231 TAGCAT 889237 2.86 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatATGAATtgcgttggcctatatTAGCATggaatGcgaag 889312 889689 F ybjM ybjMp2 Sigma70 889225 889230 TTAGCA 18 889249 889254 TATCTT 889260 2.908 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctataTTAGCAtggaatgcgaagcggcttTATCTTactgaAcgcca 889312 889689 F ybjM ybjMp3 Sigma70 889169 889174 TTTACT 17 889192 889197 TATCAA 889203 3.576 good homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatTTTACTagtgtaatcacattaggTATCAAcggctAtatga 889312 889689 F ybjM ybjMp4 Sigma70 889128 889133 TTCATT 19 889153 889158 TAAAGT 889163 3.71 good homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaTTCATTcagcgcacctaaacgatagTAAAGTaacaAtatat 889312 889689 F ybjM ybjMp8 Sigma70 889074 889079 TTGAAA 17 889097 889102 TAATGT 889108 5.926 high homology 2.84E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctgTTGAAAgaaatggtaatttacgaTAATGTtttttAccaga 897212 897700 F ybjO ybjOp5 Sigma70 897136 897141 GTGCAA 17 897159 897164 TAAAAT 897170 4.236 high homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagcGTGCAAgacgtggctgaagacacTAAAATttgccAacctg 904963 905976 R ybjS ybjSp1 Sigma70 906074 906079 ATTAAT 15 906053 906058 TATTCT 906047 3.07 poor homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacagATTAATcgacaaaacctgcgtTATTCTttcatGtttcc 904963 905976 R ybjS ybjSp3 Sigma70 906150 906155 TTGATG 17 906127 906132 TATTTT 906121 4.906 high homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTGATGatccccgcgcatctgttTATTTTtcgcgGaatgg 906075 907505 R ybjT ybjTp1 Sigma70 907707 907712 ATGTGA 16 907685 907690 TATGCT 907680 1.923 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcggATGTGAtgcgtcaggacaccaaTATGCTgtttGttcgc 910405 911373 R hcr hcrp1 Sigma70 911529 911534 CTGCTT 17 911506 911511 TATCGT 911500 3.236 good homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacgCTGCTTtctctgggcgtgaaaaaTATCGTcaccgGcccga 913181 914080 R ybjE ybjEp1 Sigma70 914203 914208 ATGAAA 20 914177 914182 TATGCA 914172 2.144 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaATGAAAacgaatactctactgctcctTATGCAtaacAtttcc 913181 914080 R ybjE ybjEp2 Sigma70 914233 914238 TTTGTA 15 914212 914217 TATCTT 914206 2.55 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcagTTTGTAattaaagcgcaagaaTATCTTtaaatGaaaac 913181 914080 R ybjE ybjEp4 Sigma70 914148 914153 TTTACT 17 914125 914130 TAGTGT 914118 3.996 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaacTTTACTcgtccttccgctttcagTAGTGTgtcatcGcgcat 914575 915270 R aqpZ aqpZp1 Sigma70 915327 915332 TTTACG 20 915301 915306 TATTTT 915295 2.804 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTTACGacgaccctataaaacgaccaTATTTTtcacaGggtca 914575 915270 R aqpZ aqpZp3 Sigma70 915383 915388 GTGAAT 16 915361 915366 TAAAAT 915356 3.323 good homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctgGTGAATgactcgccttcgttttTAAAATagccGcgcat 915696 917354 F ybjD ybjDp1 Sigma70 915543 915548 TTGCAG 19 915568 915573 TATAAC 915580 2.51 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTGCAGacttatcagcaagagggagTATAACgcgattAttcgc 915696 917354 F ybjD ybjDp2 Sigma70 915543 915548 TTGCAG 16 915565 915570 GAGTAT 915576 2.573 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTGCAGacttatcagcaagaggGAGTATaacgcGattat 915696 917354 F ybjD ybjDp3 Sigma70 915624 915629 ATCACG 21 915651 915656 TATACT 915661 2.663 poor homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtcATCACGtattagcaaggcctttcccgtTATACTgccaGcgtaa 915696 917354 F ybjD ybjDp6 Sigma70 915482 915487 TTTAAT 20 915508 915513 TAATTT 915519 3.154 good homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaTTTAATcctttaggcgtaataaaaaaTAATTTatcatGctaat 915696 917354 F ybjD ybjDp7 Sigma70 915490 915495 TTTAGG 17 915513 915518 TATCAT 915523 3.436 good homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccTTTAGGcgtaataaaaaataattTATCATgctaAttatt 918458 919573 F macA macAp1 Sigma70 918352 918357 TTAACC 21 918379 918384 TAACGT 918391 2.323 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatcTTAACCaaacatcaatagtgtgattacTAACGTaaatttTagggt 918458 919573 F macA macAp2 Sigma70 918362 918367 ATCAAT 16 918384 918389 TAAATT 918395 2.403 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaacATCAATagtgtgattactaacgTAAATTttaggGttttg 918458 919573 F macA macAp3 Sigma70 918412 918417 TTGAAG 19 918437 918442 TATGGA 918449 2.74 poor homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcgTTGAAGttaatgacccggattggcaTATGGAgtattcAgaaaa 918458 919573 F macA macAp5 Sigma70 918343 918348 TTGCGT 18 918367 918372 TAGTGT 918377 3.138 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caccaTTGCGTatcttaaccaaacatcaaTAGTGTgattActaac 922136 922456 F clpS clpSp2 Sigma70 921976 921981 TTGAAG 19 922001 922006 GAATGT 922012 2.88 poor homology 0.00012341 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTGAAGcagttaacgctattgacagGAATGTgacagAtgtcg 922136 922456 F clpS clpSp5 Sigma70 922034 922039 ATGATA 18 922058 922063 TAGATT 922069 3.248 good homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatagATGATAgttatctatcatgtggagTAGATTggtcaGgcaaa 922136 922456 F clpS clpSp6 Sigma70 921940 921945 TTGACA 16 921962 921967 TATGAA 921973 4.033 high homology 1.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcatTTGACAggggacaaggggcaggTATGAAtcaaaAatttg 925951 926655 R aat aatp3 Sigma70 926709 926714 TTCAAG 17 926686 926691 TATTGA 926681 2.886 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accagTTCAAGcagggtttgtaagctatTATTGAacgaTccgac 925951 926655 R aat aatp4 Sigma70 926716 926721 TTACCA 16 926694 926699 TAAGCT 926687 3.523 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaTTACCAgttcaagcagggtttgTAAGCTattattGaacga 925951 926655 R aat aatp5 Sigma70 926716 926721 TTACCA 21 926689 926694 TATTAT 926683 4.303 high homology 3.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaTTACCAgttcaagcagggtttgtaagcTATTATtgaacGatccg 926697 928418 R cydC cydCp1 Sigma70 928541 928546 TTGCTG 19 928516 928521 TATGCA 928510 2.49 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agatcTTGCTGactgggatgtcatttgggtTATGCAggatgGccgga 926697 928418 R cydC cydCp2 Sigma70 928522 928527 TTGGGT 15 928501 928506 GATTAT 928495 2.68 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcatTTGGGTtatgcaggatggccgGATTATtgagcAaggac 926697 928418 R cydC cydCp6 Sigma70 928656 928661 TTGGAT 18 928632 928637 GATGCT 928627 3.508 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactgTTGGATgaacccgctgccagccttGATGCTcacaGtgaac 936595 937206 F lolA lolAp1 Sigma70 936500 936505 TTCAGT 21 936527 936532 GATTAT 936539 2.123 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTCAGTattttcttctttcctcaagctGATTATtagcctGgaata 936595 937206 F lolA lolAp2 Sigma70 936508 936513 TTTCTT 19 936533 936538 TAGCCT 936544 2.27 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtatTTTCTTctttcctcaagctgattatTAGCCTggaatAgagag 945094 946242 F ycaD ycaDp2 Sigma70 944993 944998 ATAATA 19 945018 945023 TATTTT 945029 2.04 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgATAATAccgccgctgggatatcgcgTATTTTcacccAttgac 945094 946242 F ycaD ycaDp3 Sigma70 944879 944884 ATGAAA 20 944905 944910 TATGAA 944915 2.354 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaccATGAAAtttttcgactgaacgaagcgTATGAAatttGtgtta 945094 946242 F ycaD ycaDp4 Sigma70 944957 944962 TTCAGC 18 944981 944986 TAATAT 944992 2.698 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctcTTCAGCattagcgttatgaatgagTAATATaaatcGataat 945094 946242 F ycaD ycaDp5 Sigma70 944906 944911 ATGAAA 15 944927 944932 TAAAAA 944938 3.36 good homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgtATGAAAtttgtgttagttcaaTAAAAAcaatcAgatga 945094 946242 F ycaD ycaDp6 Sigma70 945030 945035 TTGACA 16 945052 945057 CATGAT 945062 3.453 good homology 2.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acccaTTGACAatgtttttggcggTGgCATGATgcgcAtgaaa 946452 947882 F ycaM ycaMp2 Sigma70 946307 946312 TTGCTT 20 946333 946338 TAAAAA 946343 3.514 good homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgacTTGCTTtattccaaattttattcgttTAAAAAtaaaAtgtgc 946452 947882 F ycaM ycaMp3 Sigma70 946331 946336 TTTAAA 21 946358 946363 TAATTT 946368 3.703 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgTTTAAAaataaaatgtgcagcaggttaTAATTTtgcaTttcgc 946452 947882 F ycaM ycaMp4 Sigma70 946315 946320 TTCCAA 18 946339 946344 TAAAAT 946350 4.948 high homology 1.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTCCAAattttattcgtttaaaaaTAAAATgtgcaGcaggt 946452 947882 F ycaM ycaMp5 Sigma70 946331 946336 TTTAAA 19 946356 946361 TATAAT 946367 5.25 high homology 2.90E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgTTTAAAaataaaatgtgcagcaggtTATAATtttgcAtttcg 947883 948791 R ycaN ycaNp1 Sigma70 948891 948896 CTGCAT 16 948869 948874 TAAGTT 948863 2.263 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagaCTGCATaattttacctccacgtTAAGTTctggaGcgcac 947883 948791 R ycaN ycaNp2 Sigma70 948976 948981 TTGCCC 18 948952 948957 CAATAT 948946 2.608 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctccaTTGCCCgctgatggatcgcatcagCAATATgtgcgGtcaat 948891 949481 F ycaK ycaKp1 Sigma70 948675 948680 TTTAAT 19 948700 948705 GAGGAT 948712 2.09 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgtTTTAATactatggctaatggcggacGAGGATaagcctAactca 948891 949481 F ycaK ycaKp2 Sigma70 948654 948659 TTTAAG 20 948680 948685 TACTAT 948691 3.034 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaatTTTAAGacgttgttccagtgttttaaTACTATggctaAtggcg 948891 949481 F ycaK ycaKp3 Sigma70 948738 948743 TTGATT 15 948759 948764 GAAAGT 948770 3.91 good homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagctTTGATTacgggccacggcaaaGAAAGTggcaaAgtcag 948891 949481 F ycaK ycaKp5 Sigma70 948831 948836 TTTACA 17 948854 948859 TAAAGT 948866 5.376 high homology 3.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgTTTACAggattatgccgcctgcgTAAAGTgcgctcCagaac 949563 950303 R pflA pflAp3 Sigma70 950489 950494 TTAGAT 18 950465 950470 TAAAAA 950460 2.958 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtaaTTAGATttgactgaaatcgtacagTAAAAAgcgtAcaata 949563 950303 R pflA pflAp4 Sigma70 950409 950414 TTTTTT 17 950386 950391 TAAGGT 950381 3.276 good homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagccTTTTTTgtcagctatctatacttTAAGGTgactGccaaa 949563 950303 R pflA pflAp8 Sigma70 950483 950488 TTGACT 21 950456 950461 TACAAT 950451 5.413 high homology 3.80E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagatTTGACTgaaatcgtacagtaaaaagcgTACAATaaagGctcca 954095 955855 R ycaO ycaOp1 Sigma70 955887 955892 ATTATT 18 955863 955868 TAAAGT 955856 2.898 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccgtATTATTgcgcgctttccgtacgacTAAAGTgattttCatgac 954095 955855 R ycaO ycaOp2 Sigma70 955915 955920 GTGATA 21 955888 955893 TATTAT 955882 2.973 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgGTGATAgcgcctttgagataaaacccgTATTATtgcgcGctttc 955985 956677 F ycaP ycaPp2 Sigma70 955760 955765 TTCAAT 16 955782 955787 GAAAGT 955792 2.863 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctcTTCAATctgaaagccgaggtctGAAAGTttttGctgga 955985 956677 F ycaP ycaPp3 Sigma70 955830 955835 TTGCCG 20 955856 955861 GAAAAT 955868 3.354 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctTTGCCGgggataaatgtttgcgtcatGAAAATcactttAgtcgt 959487 960251 F ycaL ycaLp2 Sigma70 959411 959416 TTAATG 19 959436 959441 TAAGTT 959446 2.18 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaTTAATGgtagcgtcgcttgtcaatgTAAGTTgttgAtacat 959487 960251 F ycaL ycaLp3 Sigma70 959427 959432 TTGTCA 21 959454 959459 TATTTA 959465 2.663 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTGTCAatgtaagttgttgatacataaTATTTAtatatGattaa 959487 960251 F ycaL ycaLp5 Sigma70 959427 959432 TTGTCA 16 959449 959454 CATAAT 959459 3.393 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTGTCAatgtaagttgttgataCATAATatttAtatat 959487 960251 F ycaL ycaLp6 Sigma70 959443 959448 TTGATA 19 959468 959473 TAATCA 959478 3.51 good homology 5.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttgTTGATAcataatatttatatatgatTAATCAacggAtgatt 959487 960251 F ycaL ycaLp9 Sigma70 959427 959432 TTGTCA 18 959451 959456 TAATAT 959461 4.908 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTGTCAatgtaagttgttgatacaTAATATttatAtatga 963543 965807 F ycaI ycaIp1 Sigma70 963485 963490 TTCCCA 16 963507 963512 CAAAGT 963518 1.943 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaTTCCCAccagacaaccgctcaaCAAAGTtgcacActttc 963543 965807 F ycaI ycaIp2 Sigma70 963435 963440 TTTTCA 20 963461 963466 GAATAT 963472 1.964 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacagTTTTCAccctttcgttaaattcttctGAATATgcctcGgggaa 963543 965807 F ycaI ycaIp3 Sigma70 963459 963464 CTGAAT 15 963480 963485 CAAAAT 963490 2.36 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcttCTGAATatgcctcggggaacgCAAAATtcccAccaga 963543 965807 F ycaI ycaIp5 Sigma70 963384 963389 TTTCAT 18 963408 963413 GAAGCT 963419 2.688 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTTCATttctctaatctggaactgGAAGCTgcctcGcagag 963543 965807 F ycaI ycaIp7 Sigma70 963427 963432 TTGAAC 17 963450 963455 TAAATT 963461 5.326 high homology 3.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagttTTGAACagttttcaccctttcgtTAAATTcttctGaatat 971845 972624 R ycbC ycbCp1 Sigma70 972804 972809 ATGTTA 19 972779 972784 TATCAT 972774 2.57 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtaaATGTTAcgggaaaacttttccgcaaTATCATcaaaAttgcg 971845 972624 R ycbC ycbCp2 Sigma70 972739 972744 TTGGCT 18 972715 972720 GACGCT 972709 2.768 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accggTTGGCTaagacgttttctgataaaGACGCTattttGtcaca 992500 993267 R ssuB ssuBp1 Sigma70 993307 993312 CTGGTT 16 993285 993290 TATCAT 993279 2.313 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcctCTGGTTgcgctggaacccggctTATCATttgaaGgaggc 992500 993267 R ssuB ssuBp3 Sigma70 993396 993401 TTGCAA 20 993370 993375 TATTAT 993364 5.154 high homology 2.65E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtttTTGCAAacggacgtggtggtagtcgcTATTATtctttAcgccc 997091 997630 F elfA elfAp1 Sigma70 997032 997037 TTAAGT 20 997058 997063 TATCAT 997068 2.574 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTAAGTctaatgtcatttaaaggcatTATCATatttAcgaag 997091 997630 F elfA elfAp2 Sigma70 996991 996996 TTAGTA 18 997015 997020 GACAAT 997025 2.658 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTAGTAtgcttgatttaaatggcgGACAATtattGttatt 997091 997630 F elfA elfAp4 Sigma70 997004 997009 TTTAAA 20 997030 997035 TATTAA 997041 3.054 poor homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttgaTTTAAAtggcggacaattattgttatTATTAAgtctaAtgtca 997091 997630 F elfA elfAp7 Sigma70 997000 997005 TTGATT 15 997021 997026 TATTGT 997031 4.87 high homology 1.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcTTGATTtaaatggcggacaatTATTGTtattAttaag 997091 997630 F elfA elfAp8 Sigma70 997000 997005 TTGATT 21 997027 997032 TATTAT 997037 5.283 high homology 6.02E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatgcTTGATTtaaatggcggacaattatTGtTATTATtaagTctaat 997713 998414 F elfD elfDp2 Sigma70 997656 997661 TTAGTA 21 997683 997688 GATATT 997693 2.153 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTAGTAcccctccagtgttctggagggGATATTcataTttttt 997713 998414 F elfD elfDp5 Sigma70 997527 997532 ATGGAG 16 997549 997554 TAAAGT 997560 2.503 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaggATGGAGatcagacgttgactttTAAAGTtgattAtatcg 997713 998414 F elfD elfDp8 Sigma70 997627 997632 TTAATA 17 997650 997655 TATTAA 997661 3.966 good homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTAATAgaactcattaattgtttTATTAAttagtAcccct 1005175 1005717 F ycbW ycbWp1 Sigma70 1005040 1005045 TTTATT 19 1005065 1005070 TATTCA 1005076 2.59 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggcTTTATTttcagccctggttgttttaTATTCAtcgctGttgct 1005175 1005717 F ycbW ycbWp2 Sigma70 1005094 1005099 TTGTAC 15 1005115 1005120 TATTAA 1005126 2.76 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acattTTGTACttttattgttgaggtTATTAAgcgaaGcgaca 1005175 1005717 F ycbW ycbWp3 Sigma70 1005101 1005106 TTTATT 21 1005128 1005133 GACAAT 1005139 2.963 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtactTTTATTgttgaggttattaagcgaagcGACAATggattGtgttg 1005175 1005717 F ycbW ycbWp4 Sigma70 1005077 1005082 TTGCTT 20 1005103 1005108 TATTGT 1005113 4.084 high homology 2.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTGCTTatttagacattttgtactttTATTGTtgagGttatt 1005175 1005717 F ycbW ycbWp6 Sigma70 1005040 1005045 TTTATT 17 1005063 1005068 TATATT 1005073 5.016 high homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggcTTTATTttcagccctggttgtttTATATTcatcGctgtt 1005714 1006823 R ycbX ycbXp1 Sigma70 1006881 1006886 TTATAG 20 1006855 1006860 TAAAGT 1006849 2.414 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcaTTATAGctaataagcgcgtcatgtcaTAAAGTtgaggGcttat 1005714 1006823 R ycbX ycbXp2 Sigma70 1006948 1006953 ATAACC 18 1006924 1006929 TAAAAT 1006918 2.858 poor homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgagcATAACCcagggccaaactgacaaaTAAAATagcctAatggg 1014938 1015105 F rmf rmfp1 Sigma70 1014824 1014829 GTGAAT 19 1014849 1014854 TATGAT 1014860 2.73 poor homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggcGTGAATtttgcgcattgacggcagtTATGATtcgcgGtattg 1014938 1015105 F rmf rmfp2 Sigma70 1014863 1014868 TTGCTT 20 1014889 1014894 TAATCA 1014900 2.754 poor homology 0.000122182 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtaTTGCTTaactgtgattgcacatttagTAATCActgttTtcttt 1014938 1015105 F rmf rmfp3 Sigma70 1014863 1014868 TTGCTT 17 1014886 1014891 TAGTAA 1014897 3.656 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtaTTGCTTaactgtgattgcacattTAGTAAtcactGttttc 1014938 1015105 F rmf rmfp4 Sigma70 1014719 1014724 TTGCCT 19 1014744 1014749 TAACGT 1014755 3.77 good homology 5.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgTTGCCTgaggcggtttttttgtctcTAACGTgcggaAaaatt 1014938 1015105 F rmf rmfp5 Sigma70 1014693 1014698 TTGTAA 16 1014715 1014720 TATGTT 1014726 3.843 good homology 6.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagatTTGTAAatataaccgtctccggTATGTTgcctgAggcgg 1015762 1017522 R ycbZ ycbZp1 Sigma70 1017749 1017754 TTCCAT 16 1017727 1017732 GATTTT 1017720 2.073 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatacTTCCATttccaaccgctttcaaGATTTTcaagttGttgat 1015762 1017522 R ycbZ ycbZp2 Sigma70 1017587 1017592 TTTCTA 19 1017562 1017567 TACGGT 1017555 2.63 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgcTTTCTAcgtgtgctgtagtgccggtTACGGTataatcGcggct 1015762 1017522 R ycbZ ycbZp3 Sigma70 1017733 1017738 TTTCAA 15 1017712 1017717 GATATT 1017706 3.18 good homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTTCAAgattttcaagttgttGATATTtcataGcgatc 1015762 1017522 R ycbZ ycbZp4 Sigma70 1017714 1017719 TTGATA 20 1017688 1017693 TACCGT 1017683 3.434 good homology 4.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agttgTTGATAtttcatagcgatctcaaTGtTACCGTgtaaCtcttt 1020361 1020990 F sxy sxyp1 Sigma70 1020296 1020301 TTTCGT 15 1020317 1020322 TAATGT 1020328 2.53 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctatTTTCGTagttaacggatccgtTAATGTgaatcAttctt 1020361 1020990 F sxy sxyp2 Sigma70 1020236 1020241 TTTGTC 18 1020260 1020265 TAAATT 1020272 2.638 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatTTTGTCgttggtgacgggaaaacaTAAATTaatcttGcccct 1020361 1020990 F sxy sxyp3 Sigma70 1020316 1020321 TTAATG 18 1020340 1020345 TATGAT 1020351 3.718 good homology 0.000166586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atccgTTAATGtgaatcattcttttaTGtTATGATtttaaAaggaa 1020361 1020990 F sxy sxyp4 Sigma70 1020270 1020275 TTGCCC 17 1020293 1020298 TATTTT 1020303 4.676 high homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatcTTGCCCcttaagaataagttgccTATTTTcgtaGttaac 1020953 1023106 R yccS yccSp1 Sigma70 1023193 1023198 TTGGTC 15 1023172 1023177 TAGAAA 1023167 2.19 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccggTTGGTCgtcgcgtggtatcggTAGAAAcagcGcaagc 1020953 1023106 R yccS yccSp2 Sigma70 1023244 1023249 TTCCTG 16 1023222 1023227 TAAAAT 1023217 3.483 good homology 7.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTCCTGtcggcattgcgaacttTAAAATtgccGctatt 1023694 1025748 F helD helDp1 Sigma70 1023642 1023647 TTCTCT 21 1023669 1023674 TAATTT 1023680 2.363 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgttTTCTCTgacggttacactgataagaaaTAATTTcgtgtGgatct 1023694 1025748 F helD helDp2 Sigma70 1023630 1023635 CTGGAG 18 1023654 1023659 TACACT 1023665 2.678 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgggCTGGAGcacgttttctctgacggtTACACTgataaGaaata 1023694 1025748 F helD helDp3 Sigma70 1023592 1023597 TTTTCA 17 1023615 1023620 TAACGT 1023627 3.446 good homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggTTTTCAgtaatgggcggcaattgTAACGTttttttGggctg 1026334 1026996 R yccT yccTp1 Sigma70 1027169 1027174 TTTCAT 21 1027142 1027147 CAAAGT 1027136 2.043 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttcTTTCATtatttcctccagactgtttaaCAAAGTgtacgAcaaag 1026334 1026996 R yccT yccTp2 Sigma70 1027169 1027174 TTTCAT 18 1027145 1027150 TAACAA 1027139 2.478 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttcTTTCATtatttcctccagactgttTAACAAagtgtAcgaca 1026334 1026996 R yccT yccTp5 Sigma70 1027047 1027052 TTAAAG 16 1027025 1027030 TATTAT 1027020 3.893 good homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgaTTAAAGaaaaattttgacacatTATTATtcggGcggtc 1027169 1027582 F yccU yccUp1 Sigma70 1027048 1027053 TTTAAT 20 1027074 1027079 CATATT 1027084 2.034 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttcTTTAATcatacttactaacatatagaCATATTtcccGctttt 1027169 1027582 F yccU yccUp2 Sigma70 1027043 1027048 TTTTCT 19 1027068 1027073 TATAGA 1027078 2.15 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTTTCTttaatcatacttactaacaTATAGAcataTttccc 1027169 1027582 F yccU yccUp3 Sigma70 1027048 1027053 TTTAAT 16 1027070 1027075 TAGACA 1027081 2.603 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttcTTTAATcatacttactaacataTAGACAtatttCccgct 1027169 1027582 F yccU yccUp4 Sigma70 1027115 1027120 ATGGTT 18 1027139 1027144 TACACT 1027150 3.138 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgcATGGTTggcatgtcggctttgtcgTACACTttgttAaacag 1027169 1027582 F yccU yccUp5 Sigma70 1027006 1027011 CTGTCA 17 1027029 1027034 TAATGT 1027040 3.296 good homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctcCTGTCAaaagaccgcccgaataaTAATGTgtcaaAatttt 1028002 1029192 R rlmI rlmIp1 Sigma70 1029290 1029295 TTTCGA 15 1029269 1029274 TATCCT 1029263 2.87 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagacTTTCGAcattgctgctctcctTATCCTtaatgGacgcg 1028002 1029192 R rlmI rlmIp4 Sigma70 1029252 1029257 TTGCAA 17 1029229 1029234 GACAAT 1029224 5.166 high homology 1.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgTTGCAAatccatggaaaactccgGACAATgacgCccatt 1029287 1029565 F yccX yccXp1 Sigma70 1029241 1029246 TTTCCA 20 1029267 1029272 TAAGGA 1029278 1.564 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagtTTTCCAtggatttgcaacgcgtccatTAAGGAtaaggAgagca 1029287 1029565 F yccX yccXp2 Sigma70 1029157 1029162 TTCGCG 21 1029184 1029189 TACACT 1029194 2.703 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTCGCGccctttggctaacactaaacgTACACTcataAtttac 1029287 1029565 F yccX yccXp4 Sigma70 1029252 1029257 TTGCAA 15 1029273 1029278 TAAGGA 1029284 3.15 good homology 5.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTGCAAcgcgtccattaaggaTAAGGAgagcaGcaatg 1029287 1029565 F yccX yccXp5 Sigma70 1029167 1029172 TTGGCT 19 1029192 1029197 TAATTT 1029203 3.56 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccctTTGGCTaacactaaacgtacactcaTAATTTactttTctgtc 1029287 1029565 F yccX yccXp6 Sigma70 1029167 1029172 TTGGCT 17 1029190 1029195 CATAAT 1029201 4.296 high homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccctTTGGCTaacactaaacgtacactCATAATttactTttctg 1029562 1029891 R yccK yccKp1 Sigma70 1030087 1030092 ATTCAT 15 1030066 1030071 TATATT 1030059 2.75 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatcATTCATggcggtgagacgaacTATATTcgtgccAcggtt 1029562 1029891 R yccK yccKp3 Sigma70 1030135 1030140 TTCATT 17 1030112 1030117 TATCTT 1030106 3.776 good homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtcTTCATTctgatctcctctggcgcTATCTTgtttgAaacca 1029562 1029891 R yccK yccKp4 Sigma70 1029946 1029951 TTTATG 18 1029922 1029927 TACACT 1029915 3.788 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctcgcTTTATGcggggctttgtttttTGtTACACTgccgccAgtctg 1029562 1029891 R yccK yccKp5 Sigma70 1029926 1029931 TTGTTA 18 1029902 1029907 TAAGGT 1029897 3.878 good homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGTTAcactgccgccagtctgatTAAGGTagtaAtaatt 1041253 1043433 R etk etkp2 Sigma70 1043561 1043566 CTGGAA 21 1043534 1043539 TATCGT 1043529 2.303 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatggCTGGAAcagaaagagatcccggatcccTATCGTaaaaGtcagg 1041253 1043433 R etk etkp3 Sigma70 1043605 1043610 TTGCTC 16 1043583 1043588 GACAAT 1043578 2.933 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcaaTTGCTCccgaggtccgcgggaaGACAATgctgTttggg 1045072 1047168 R gfcD gfcDp2 Sigma70 1047246 1047251 TTTTCT 21 1047219 1047224 TATGCT 1047213 3.163 good homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgggcTTTTCTgcgcatgtactgcccgaaaaaTATGCTgatttAaatga 1045072 1047168 R gfcD gfcDp3 Sigma70 1047371 1047376 TTGCAG 19 1047346 1047351 TATGGT 1047341 3.84 good homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgccTTGCAGgcgcggacaagaataacgtTATGGTgattAcgcct 1048662 1048967 R gfcA gfcAp2 Sigma70 1049051 1049056 CTGGAG 19 1049026 1049031 TACACT 1049020 2.22 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccaCTGGAGaacctcaaaaacaccatcaTACACTaaatcAgtaag 1049056 1049331 F insA insAp1 Sigma70 1048957 1048962 TTGTGT 16 1048979 1048984 TATTCA 1048989 2.043 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcTTGTGTttcataacttttccttTATTCAtcgcAtggac 1049056 1049331 F insA insAp3 Sigma70 1048977 1048982 TTTATT 21 1049004 1049009 GATGCT 1049014 2.593 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttccTTTATTcatcgcatggacaatacgggtGATGCTgccaActtac 1049056 1049331 F insA insAp4 Sigma70 1048946 1048951 TTGCAG 15 1048967 1048972 TAACTT 1048979 3.3 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaggaTTGCAGaaagcttgtgtttcaTAACTTttccttTattca 1049056 1049331 F insA insAp6 Sigma70 1049008 1049013 CTGCCA 16 1049030 1049035 TATGAT 1049040 3.453 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgCTGCCAacttactgatttagtgTATGATggtgTttttg 1050186 1050398 R cspH cspHp2 Sigma70 1050485 1050490 TTTATT 18 1050461 1050466 TAAATA 1050455 2.728 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatTTTATTttagccgtccggcggtctTAAATAtcgctGgcttt 1050186 1050398 R cspH cspHp3 Sigma70 1050533 1050538 TTCAAA 18 1050509 1050514 CATGAT 1050503 2.748 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtctTTCAAAccgacgcagctattaacgCATGATaattgAgatta 1050186 1050398 R cspH cspHp4 Sigma70 1050568 1050573 CTGCTT 15 1050547 1050552 TATGCT 1050542 3 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagaaCTGCTTtagtaaactactttgTATGCTgtctGtcttt 1050186 1050398 R cspH cspHp5 Sigma70 1050462 1050467 TTAAAT 16 1050440 1050445 TATTAA 1050435 3.073 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtcTTAAATatcgctggctttatttTATTAAccccGtatag 1050186 1050398 R cspH cspHp6 Sigma70 1050508 1050513 ATGATA 19 1050483 1050488 TATTTT 1050478 3.15 good homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgcATGATAattgagattaagcaaatttTATTTTagccGtccgg 1050186 1050398 R cspH cspHp7 Sigma70 1050438 1050443 TTAACC 18 1050414 1050419 TATTTT 1050408 3.248 good homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTAACCccgtatagtgcagcgcagTATTTTcagtaAggaat 1050186 1050398 R cspH cspHp9 Sigma70 1050581 1050586 CTGATA 16 1050559 1050564 TAAACT 1050553 3.843 good homology 5.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcCTGATAatgagaactgctttagTAAACTactttGtatgc 1050186 1050398 R cspH cspHp10 Sigma70 1050533 1050538 TTCAAA 21 1050506 1050511 GATAAT 1050501 3.943 good homology 8.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtctTTCAAAccgacgcagctattaacgcatGATAATtgagAttaag 1050186 1050398 R cspH cspHp11 Sigma70 1050452 1050457 CTGGCT 17 1050429 1050434 TATAGT 1050423 4.036 high homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcgCTGGCTttattttattaaccccgTATAGTgcagcGcagta 1051070 1051300 F ymcE ymcEp1 Sigma70 1050883 1050888 TTGTTA 20 1050909 1050914 TACTCA 1050920 2.034 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacgTTGTTAcgctctaaggttgccattatTACTCAacatcTccatt 1051070 1051300 F ymcE ymcEp3 Sigma70 1051014 1051019 TTGTAA 21 1051041 1051046 TAACGT 1051053 3.573 good homology 9.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attttTTGTAAatcgacgatgatcaccttTGaTAACGTcgcgctGcaaat 1051512 1052585 R yccM yccMp1 Sigma70 1052656 1052661 TTTGAA 15 1052635 1052640 TAAGAA 1052629 2.23 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgaTTTGAAtcaatatcagccagtTAAGAAcaactAgaata 1051512 1052585 R yccM yccMp2 Sigma70 1052651 1052656 ATCAAT 20 1052625 1052630 TAGAAT 1052620 2.244 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaATCAATatcagccagttaagaacaacTAGAATagtgGcattt 1051512 1052585 R yccM yccMp3 Sigma70 1052701 1052706 TTGCCG 19 1052676 1052681 TAAGAA 1052669 2.63 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtgTTGCCGctctggaagcatggttgcaTAAGAAagacctGaacgc 1052657 1055401 R torS torSp2 Sigma70 1055556 1055561 ATGCCA 19 1055531 1055536 GAAAAT 1055526 2.92 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatcATGCCAgcgcaacaggttatcagccGAAAATgccgGcaaca 1052657 1055401 R torS torSp4 Sigma70 1055480 1055485 ATGATA 21 1055453 1055458 TATGCT 1055448 3.573 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcATGATAgcctcatcaataataaggcttTATGCTagatGcattc 1052657 1055401 R torS torSp5 Sigma70 1055433 1055438 TTGCGA 16 1055411 1055416 TAAAGT 1055405 4.123 high homology 5.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgctTTGCGActcaacctttttcaccTAAAGTgcaccGaccgt 1055484 1056512 F torT torTp3 Sigma70 1055445 1055450 ATGCAT 17 1055468 1055473 TATTGA 1055478 2.886 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggaATGCATctagcataaagccttatTATTGAtgagGctatc 1055484 1056512 F torT torTp5 Sigma70 1055428 1055433 TTGAGT 18 1055452 1055457 TAGCAT 1055462 3.478 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaggTTGAGTcgcaaagcggaatgcatcTAGCATaaagCcttat 1066087 1066314 R yccJ yccJp2 Sigma70 1066353 1066358 CTGGCA 15 1066332 1066337 TAATCT 1066326 2.92 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggtCTGGCAgttaaacttaacggcTAATCTtcaacAggagg 1067304 1067477 F ymdF ymdFp1 Sigma70 1067135 1067140 TTGGAG 20 1067161 1067166 GAAGCT 1067172 1.954 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTGGAGatgatatctattctcgctaaGAAGCTgttgcAggata 1067304 1067477 F ymdF ymdFp5 Sigma70 1067206 1067211 TTCACT 19 1067231 1067236 GAAAAT 1067242 3.27 good homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcagTTCACTaagcttagtcccacgtagcGAAAATatggcAgccgc 1067304 1067477 F ymdF ymdFp6 Sigma70 1067135 1067140 TTGGAG 17 1067158 1067163 TAAGAA 1067170 3.316 good homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTGGAGatgatatctattctcgcTAAGAAgctgttGcagga 1067304 1067477 F ymdF ymdFp8 Sigma70 1067103 1067108 TTTTAA 18 1067127 1067132 GATAAT 1067138 3.618 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtttTTTTAAtcataagagcggcttatgGATAATtattgGagatg 1081466 1082593 F efeO efeOp1 Sigma70 1081427 1081432 TTGCTT 21 1081454 1081459 GATAGT 1081466 3.763 good homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactcTTGCTTagttacaacatactttaaaggGATAGTctcgtcAtgacc 1085329 1085742 R pgaD pgaDp1 Sigma70 1085924 1085929 CTGATG 20 1085898 1085903 TAATCT 1085891 2.214 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagcCTGATGatcgagaatcgctatgagcaTAATCTgacttcAtcgct 1085329 1085742 R pgaD pgaDp2 Sigma70 1085942 1085947 CTGCAA 21 1085915 1085920 GAGAAT 1085910 2.253 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaCTGCAAtttattgtcagcctgatgatcGAGAATcgctAtgagc 1085329 1085742 R pgaD pgaDp4 Sigma70 1085881 1085886 TTTTCT 19 1085856 1085861 TATTTT 1085851 2.74 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTTTCTggattatttggttcccggtTATTTTctggAtgctg 1085329 1085742 R pgaD pgaDp5 Sigma70 1085960 1085965 TTGTGT 20 1085934 1085939 TATTGT 1085927 2.764 poor homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTGTGTacgttatgtttactgcaattTATTGTcagcctGatgat 1085329 1085742 R pgaD pgaDp6 Sigma70 1085868 1085873 TTGGTT 15 1085847 1085852 GATGCT 1085840 2.97 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTGGTTcccggttattttctgGATGCTgagcctGgcaac 1085329 1085742 R pgaD pgaDp8 Sigma70 1085816 1085821 TTTACA 17 1085793 1085798 TAAAAA 1085787 4.546 high homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTTACAcgagtcatgttgatgccTAAAAAgcaacGcgccc 1093498 1094364 R insF insFp1 Sigma70 1094606 1094611 CTGAAT 16 1094584 1094589 GAAGCT 1094578 1.923 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgcCTGAATttcgcagtgaagccctGAAGCTtgctgAacgca 1093498 1094364 R insF insFp2 Sigma70 1094427 1094432 CTGGCA 20 1094401 1094406 TATCCT 1094395 2.224 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccagCTGGCAgaacgggatgaagagctggcTATCCTccaaaAggccg 1095066 1096052 F ycdU ycdUp2 Sigma70 1094906 1094911 CTGAAT 16 1094928 1094933 GAATAT 1094938 2.383 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggaCTGAATctctcgatacatttctGAATATgccaAccccg 1095066 1096052 F ycdU ycdUp3 Sigma70 1094999 1095004 TTGCTG 19 1095024 1095029 TATGCA 1095035 2.49 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGCTGgcgtggatcagcaacgagtTATGCAttgtcGtaaag 1095066 1096052 F ycdU ycdUp6 Sigma70 1094884 1094889 TTAACT 18 1094908 1094913 GAATCT 1094918 3.048 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacacTTAACTcatacggtgaaatggactGAATCTctcgAtacat 1095066 1096052 F ycdU ycdUp7 Sigma70 1094896 1094901 GTGAAA 17 1094919 1094924 TACATT 1094930 3.376 good homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacgGTGAAAtggactgaatctctcgaTACATTtctgaAtatgc 1095066 1096052 F ycdU ycdUp8 Sigma70 1094858 1094863 TTATCA 15 1094879 1094884 TACACT 1094891 3.57 good homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcaaTTATCAaagaaaatctctcatTACACTtaactcAtacgg 1097109 1098047 F ghrA ghrAp1 Sigma70 1096885 1096890 TTCCTG 18 1096909 1096914 TAATTT 1096920 2.528 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgTTCCTGtcttgctggaacgggcgcTAATTTagggaAatcat 1097109 1098047 F ghrA ghrAp4 Sigma70 1097051 1097056 TTGTAG 20 1097077 1097082 TAAATT 1097087 3.294 good homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcctTTGTAGatcataacgataagtgcgaaTAAATTtcgcAcaacg 1097109 1098047 F ghrA ghrAp5 Sigma70 1097033 1097038 TTGTTA 17 1097056 1097061 GATCAT 1097066 3.866 good homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggatTTGTTAtgctggtggcctttgtaGATCATaacgAtaagt 1097109 1098047 F ghrA ghrAp6 Sigma70 1097015 1097020 TTGCCA 16 1097037 1097042 TATGCT 1097047 4.923 high homology 1.09E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tttttTTGCCAccgaccacggattTGtTATGCTggtgGccttt 1098102 1098839 F ycdX ycdXp2 Sigma70 1097944 1097949 TTACCC 20 1097970 1097975 TACATT 1097980 2.154 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgaTTACCCgtcccgctgaagctgtggagTACATTtctcGcacca 1098102 1098839 F ycdX ycdXp3 Sigma70 1098044 1098049 CTAATA 18 1098068 1098073 TATCCT 1098079 2.368 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggctaCTAATAaagcatcaggattccTGcTATCCTtggcgGgaatt 1098102 1098839 F ycdX ycdXp6 Sigma70 1097865 1097870 TTTAAT 18 1097889 1097894 GAAAGT 1097901 3.438 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgttTTTAATcgtgaacccttaccgcctGAAAGTccgctcTggcaa 1099519 1100010 F ycdZ ycdZp1 Sigma70 1099485 1099490 ATTCAT 15 1099506 1099511 TATCAT 1099517 2.48 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atctcATTCATggccgcgttttcTGcTATCATgcgcgGcatga 1099519 1100010 F ycdZ ycdZp4 Sigma70 1099440 1099445 CTGCAA 19 1099465 1099470 TAAAAT 1099475 4.01 good homology 3.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cataaCTGCAAcggataatttgttgttgcaTAAAATgtgtGctcga 1104637 1104948 F ymdA ymdAp5 Sigma70 1104411 1104416 TTTAAA 21 1104438 1104443 GAAAAT 1104448 3.833 good homology 8.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgagTTTAAAtatttccccggacgatcgggtGAAAATagttGttact 1104637 1104948 F ymdA ymdAp7 Sigma70 1104521 1104526 TTGAAA 15 1104542 1104547 GAATCT 1104553 4.22 high homology 7.43E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttgTTGAAAtatcgagcataagatGAATCTggagaGaatgg 1104637 1104948 F ymdA ymdAp8 Sigma70 1104513 1104518 TTAATT 17 1104536 1104541 TAAGAT 1104548 4.596 high homology 0.000139144 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtcTTAATTtgttgaaatatcgagcaTAAGATgaatctGgagag 1105043 1105576 F ymdB ymdBp1 Sigma70 1104982 1104987 ATGCGA 20 1105008 1105013 TACACT 1105019 2.354 poor homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaATGCGAtttaaccaaaaagcctgctgTACACTtaagaAacaag 1105043 1105576 F ymdB ymdBp2 Sigma70 1104967 1104972 TTGCTG 17 1104990 1104995 TAACCA 1105000 3.026 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgTTGCTGagcagaaaaatgcgattTAACCAaaaaGcctgc 1105043 1105576 F ymdB ymdBp3 Sigma70 1104902 1104907 TTGATA 18 1104926 1104931 TAATGA 1104937 3.618 good homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatcTTGATAaacagaaaaagctggctgTAATGAacatcGaatat 1107007 1108164 R opgC opgCp1 Sigma70 1108309 1108314 TTCCAT 19 1108284 1108289 GATGCT 1108279 2.34 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgcTTCCATtctggttagtggtagcgatGATGCTatgcAtaaaa 1107007 1108164 R opgC opgCp2 Sigma70 1108309 1108314 TTCCAT 16 1108287 1108292 GATGAT 1108281 2.603 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgcTTCCATtctggttagtggtagcGATGATgctatGcataa 1112802 1113029 F yceK yceKp1 Sigma70 1112626 1112631 ATAAAA 19 1112651 1112656 TACGCT 1112662 2.03 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaATAAAAacgtagttgcctgatgcgcTACGCTtatcaGgccta 1112802 1113029 F yceK yceKp2 Sigma70 1112753 1112758 ATAAAA 18 1112777 1112782 TATTTT 1112788 2.808 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccaATAAAAataccggcgttatgccggTATTTTtttacGaaaga 1112802 1113029 F yceK yceKp3 Sigma70 1112600 1112605 TTGCGT 21 1112627 1112632 TAAAAA 1112637 3.123 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTGCGTaaaccggatgcggcttcgcaaTAAAAAcgtaGttgcc 1113487 1114713 R mdtG mdtGp1 Sigma70 1114892 1114897 TTCACG 20 1114866 1114871 GATGCT 1114860 1.734 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttccTTCACGctattaaatctcccatgccgGATGCTtcagaAtggca 1113487 1114713 R mdtG mdtGp2 Sigma70 1114883 1114888 TTAAAT 18 1114859 1114864 CAGAAT 1114854 2.518 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctaTTAAATctcccatgccggatgcttCAGAATggcaTccggc 1113487 1114713 R mdtG mdtGp3 Sigma70 1114797 1114802 TTGCGC 17 1114774 1114779 CATAAT 1114769 3.086 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggaTTGCGCcccctggaagtcgggcgCATAATtagtGtgctt 1117124 1117699 R yceI yceIp4 Sigma70 1117827 1117832 TTGGCT 17 1117804 1117809 TACTGT 1117798 4.506 high homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTGGCTcgcgtggagcgtcgtagTACTGTccgttAtgcac 1118530 1118670 R yceO yceOp2 Sigma70 1118898 1118903 CTGTAC 15 1118877 1118882 TATGAT 1118871 2.21 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgcCTGTACggcgctgcctgcaccTATGATaattcGcctga 1118530 1118670 R yceO yceOp3 Sigma70 1118810 1118815 TTACCG 19 1118785 1118790 TAAATT 1118778 2.93 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcaTTACCGgcctgagtgggcacggtttTAAATTtgcgtcAgtttt 1118530 1118670 R yceO yceOp4 Sigma70 1118853 1118858 TTTATT 21 1118826 1118831 GATAAT 1118820 3.613 good homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagatTTTATTatcgataccctacccggccacGATAATacactGctcat 1118530 1118670 R yceO yceOp8 Sigma70 1118876 1118881 ATGATA 19 1118851 1118856 TATTAT 1118846 3.94 good homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctATGATAattcgcctgacgaagatttTATTATcgatAcccta 1122630 1123277 R grxB grxBp2 Sigma70 1123356 1123361 TTGCTT 18 1123332 1123337 GATACT 1123325 4.478 high homology 4.45E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgtTTGCTTgaacgcgacgcctgatttGATACTccccccTgactc 1122630 1123277 R grxB grxBp4 Sigma70 1123334 1123339 TTGATA 17 1123311 1123316 CATACT 1123306 4.846 high homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTGATActcccccctgactccttCATACTgaaaGtgaac 1123341 1124549 R mdtH mdtHp1 Sigma70 1124651 1124656 ATCAAA 20 1124625 1124630 TATTGT 1124619 2.254 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctctATCAAAgcgacgttttgataaaaaaaTATTGTccccgAagtga 1123341 1124549 R mdtH mdtHp3 Sigma70 1124684 1124689 CTGCAT 15 1124663 1124668 TAAAAA 1124656 2.65 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attttCTGCATtattcacatattTGaTAAAAActctctAtcaaa 1123341 1124549 R mdtH mdtHp5 Sigma70 1124676 1124681 TTCACA 18 1124652 1124657 TATCAA 1124647 2.988 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTCACAtatttgataaaaactctcTATCAAagcgAcgttt 1125380 1126027 F yceH yceHp1 Sigma70 1125246 1125251 TTTACT 16 1125268 1125273 GAAAAA 1125278 2.123 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgaTTTACTggcgcgactgggttttGAAAAAgaagGctatg 1125380 1126027 F yceH yceHp4 Sigma70 1125266 1125271 TTGAAA 17 1125289 1125294 GACTAT 1125300 4.896 high homology 8.05E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggttTTGAAAaagaaggctatgcgaaaGACTATctgttGattga 1126029 1126952 F yceM yceMp1 Sigma70 1125869 1125874 ATGCAT 18 1125893 1125898 GAAGAT 1125904 2.448 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctacATGCATcttttcagtggtgaggttGAAGATcagccGgcggt 1127062 1128597 F murJ murJp1 Sigma70 1126825 1126830 TTGTCG 20 1126851 1126856 GAATGT 1126862 1.664 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgggtTTGTCGgctgtgcgcggcacttcattGAATGTgtgcaAaacca 1127062 1128597 F murJ murJp2 Sigma70 1126936 1126941 ATGCGA 17 1126959 1126964 TAACAT 1126970 3.176 good homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcgATGCGAtgagtgaataaaccctgTAACATctggcGgtagc 1127062 1128597 F murJ murJp3 Sigma70 1126845 1126850 TTCATT 17 1126868 1126873 GACAGT 1126879 3.196 good homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcacTTCATTgaatgtgtgcaaaaccaGACAGTtccgcAaaccg 1143725 1144045 F yceQ yceQp4 Sigma70 1143585 1143590 TTTCAT 20 1143611 1143616 TACATT 1143621 3.064 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTTCATcgtaacttactcattattctTACATTgacgActaag 1143725 1144045 F yceQ yceQp5 Sigma70 1143575 1143580 TTAACA 17 1143598 1143603 TACTCA 1143609 3.336 good homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTAACAttcttttcatcgtaactTACTCAttattCttaca 1143725 1144045 F yceQ yceQp6 Sigma70 1143571 1143576 TTGATT 16 1143593 1143598 TAACTT 1143603 3.673 good homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcgTTGATTaacattcttttcatcgTAACTTactcAttatt 1143725 1144045 F yceQ yceQp7 Sigma70 1143584 1143589 TTTTCA 15 1143605 1143610 TATTCT 1143617 3.76 good homology 0.000100034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattcTTTTCAtcgtaacttactcatTATTCTtacattGacgac 1144163 1145122 F rluC rluCp1 Sigma70 1144028 1144033 TTCACT 21 1144055 1144060 TAACCA 1144066 1.933 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTCACTtcttgctggtgattggtttaaTAACCAtcaatAaagtg 1144163 1145122 F rluC rluCp2 Sigma70 1144028 1144033 TTCACT 18 1144052 1144057 TAATAA 1144063 3.008 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTCACTtcttgctggtgattggttTAATAAccatcAataaa 1144163 1145122 F rluC rluCp3 Sigma70 1144042 1144047 GTGATT 17 1144065 1144070 TAAAGT 1144075 3.456 good homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgGTGATTggtttaataaccatcaaTAAAGTgatcAcgcag 1144163 1145122 F rluC rluCp4 Sigma70 1143976 1143981 TTGTTA 15 1143997 1144002 TACCAT 1144008 3.6 good homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagccTTGTTAtagcaagatgactttTACCATttatcAcccgc 1145234 1145818 R yceF yceFp1 Sigma70 1145913 1145918 TTTATT 15 1145892 1145897 TAACAA 1145886 2.23 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence actgcTTTATTttcgttcagtgcTGaTAACAAacatcAacctg 1145234 1145818 R yceF yceFp2 Sigma70 1145937 1145942 TTCGCA 20 1145911 1145916 TATTTT 1145905 2.614 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTCGCAcacattgcgggttactgcttTATTTTcgttcAgtgct 1145234 1145818 R yceF yceFp4 Sigma70 1146024 1146029 TTACCT 17 1146001 1146006 TATTAA 1145996 3.696 good homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTACCTtttgcatagggcgcgcaTATTAActttGtaacg 1145234 1145818 R yceF yceFp6 Sigma70 1146017 1146022 TTGCAT 21 1145990 1145995 TAACGT 1145984 3.953 good homology 4.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accttTTGCATagggcgcgcatattaactttgTAACGTcatagAgtcaa 1145234 1145818 R yceF yceFp7 Sigma70 1145878 1145883 CTGCAA 16 1145856 1145861 TAAAAT 1145851 4.073 high homology 3.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaacCTGCAAaacgaagcgcatagttTAAAATggctAtcatc 1152523 1153332 F pabC pabCp2 Sigma70 1152458 1152463 TTTATT 20 1152484 1152489 CATGCT 1152495 1.494 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagctTTTATTccgacttgttccgtagtgaaCATGCTgccacActaac 1152523 1153332 F pabC pabCp3 Sigma70 1152458 1152463 TTTATT 17 1152481 1152486 GAACAT 1152493 3.236 good homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagctTTTATTccgacttgttccgtagtGAACATgctgccAcacta 1161108 1161467 F hinT hinTp1 Sigma70 1161012 1161017 TTGAAA 15 1161033 1161038 GACCAT 1161044 3.56 good homology 1.20E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTGAAAgagcaggtttaactcGACCATactctAtactc 1161108 1161467 F hinT hinTp2 Sigma70 1161012 1161017 TTGAAA 18 1161036 1161041 CATACT 1161046 4.548 high homology 6.46E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTGAAAgagcaggtttaactcgacCATACTctatActcgc 1161108 1161467 F hinT hinTp3 Sigma70 1161012 1161017 TTGAAA 20 1161038 1161043 TACTCT 1161050 4.594 high homology 2.90E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTGAAAgagcaggtttaactcgaccaTACTCTatactcGcagtg 1166822 1167361 F ycfJ ycfJp3 Sigma70 1166598 1166603 TTGAAG 15 1166619 1166624 TACACT 1166630 4.88 high homology 1.65E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTGAAGttgcattaatcgacgTACACTggcggAtgtgg 1167423 1168055 R ycfQ ycfQp1 Sigma70 1168196 1168201 TTTTTA 19 1168171 1168176 TAAAAA 1168165 2.39 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTTTTAtaacaatcattaattaattTAAAAAtctttAaattt 1167423 1168055 R ycfQ ycfQp2 Sigma70 1168172 1168177 TTAAAA 20 1168146 1168151 TAGAAA 1168139 2.584 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatTTAAAAatctttaaatttcagttaaaTAGAAAgcaattAttttt 1167423 1168055 R ycfQ ycfQp3 Sigma70 1168113 1168118 GTGAAC 15 1168092 1168097 TATAAT 1168086 3.06 poor homology 5.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gactgGTGAACggaggtgattattttTATAATaacctTtcatt 1167423 1168055 R ycfQ ycfQp4 Sigma70 1168162 1168167 TTAAAT 21 1168135 1168140 TATTTT 1168129 3.693 good homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatctTTAAATttcagttaaatagaaagcaatTATTTTtatggGatctg 1168296 1168553 F bhsA bhsAp1 Sigma70 1168153 1168158 TTAACT 21 1168180 1168185 TAATTA 1168192 1.933 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctatTTAACTgaaatttaaagatttttaaatTAATTAatgattGttata 1168296 1168553 F bhsA bhsAp3 Sigma70 1168163 1168168 TTTAAA 15 1168184 1168189 TAATGA 1168195 2.69 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaTTTAAAgatttttaaattaatTAATGAttgttAtaaaa 1168296 1168553 F bhsA bhsAp4 Sigma70 1168163 1168168 TTTAAA 19 1168188 1168193 GATTGT 1168199 2.92 poor homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaTTTAAAgatttttaaattaattaatGATTGTtataaAaaata 1168296 1168553 F bhsA bhsAp6 Sigma70 1168174 1168179 TTAAAT 16 1168196 1168201 TAAAAA 1168208 3.333 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTAAATtaattaatgattgttaTAAAAAatatctTgtatg 1168296 1168553 F bhsA bhsAp8 Sigma70 1168173 1168178 TTTAAA 15 1168194 1168199 TATAAA 1168204 4.09 high homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agattTTTAAAttaattaatgatTGtTATAAAaaatAtcttg 1168296 1168553 F bhsA bhsAp9 Sigma70 1168207 1168212 TTGTAT 17 1168230 1168235 TATCAT 1168242 5.196 high homology 4.73E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatcTTGTATgtgatccagatcacatcTATCATttagttAtcgat 1173315 1174388 R ycfT ycfTp1 Sigma70 1174434 1174439 ATAACC 18 1174410 1174415 TAAATT 1174404 2.068 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtcATAACCcgcaggatcaaccgcatgTAAATTaaaaaAgagcg 1173315 1174388 R ycfT ycfTp2 Sigma70 1174534 1174539 ATCAAT 19 1174509 1174514 TATCAT 1174502 2.36 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtaaATCAATcggctaaattgccatgtttTATCATcaatctTgccgc 1173315 1174388 R ycfT ycfTp3 Sigma70 1174580 1174585 CTGAAC 19 1174555 1174560 TAATCT 1174549 2.62 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgtCTGAACtgtaagtgatcgtcagggcTAATCTgaaaaGccccc 1173315 1174388 R ycfT ycfTp4 Sigma70 1174510 1174515 TTATCA 20 1174484 1174489 TAATCT 1174478 2.884 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgttTTATCAtcaatcttgccgcctgatctTAATCTgaaaaAtcatc 1173315 1174388 R ycfT ycfTp5 Sigma70 1174631 1174636 TTGCTG 15 1174610 1174615 TATATA 1174604 2.95 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTGCTGtagcaaagacacgagTATATAagcgaAagcaa 1173315 1174388 R ycfT ycfTp8 Sigma70 1174551 1174556 CTGAAA 21 1174524 1174529 TAAATT 1174518 3.603 good homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaatCTGAAAagcccccgtaaatcaatcggcTAAATTgccatGtttta 1174650 1175849 F lolC lolCp1 Sigma70 1174589 1174594 TTTACC 15 1174610 1174615 TATATA 1174621 2.29 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacgTTTACCcatcttgctttcgctTATATActcgtGtcttt 1174650 1175849 F lolC lolCp2 Sigma70 1174461 1174466 CTGTCT 21 1174488 1174493 TAAGAT 1174499 2.413 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtatCTGTCTgtattggatgatttttcagatTAAGATcaggcGgcaag 1174650 1175849 F lolC lolCp3 Sigma70 1174550 1174555 TTTTCA 20 1174576 1174581 TACAGT 1174586 2.834 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggcTTTTCAgattagccctgacgatcactTACAGTtcagAcgttt 1174650 1175849 F lolC lolCp5 Sigma70 1174589 1174594 TTTACC 17 1174612 1174617 TATACT 1174622 5.096 high homology 2.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacgTTTACCcatcttgctttcgcttaTATACTcgtgTctttg 1177816 1178727 F nagK nagKp1 Sigma70 1177727 1177732 TTGGTA 21 1177754 1177759 TATTGA 1177764 2.773 poor homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaagTTGGTAtccggcgcggcgcgccagtaaTATTGAccctGcgcga 1177816 1178727 F nagK nagKp3 Sigma70 1177727 1177732 TTGGTA 18 1177751 1177756 TAATAT 1177763 4.788 high homology 3.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaagTTGGTAtccggcgcggcgcgccagTAATATtgacccTgcgcg 1179702 1180490 R ycfZ ycfZp1 Sigma70 1180683 1180688 TTATGA 15 1180662 1180667 TAAAGT 1180657 2.6 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTATGAagacagcgaaggcgaTAAAGTtaatGtttat 1179702 1180490 R ycfZ ycfZp2 Sigma70 1180681 1180686 ATGAAG 19 1180656 1180661 TAATGT 1180650 2.65 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttATGAAGacagcgaaggcgataaagtTAATGTttattAttctc 1179702 1180490 R ycfZ ycfZp3 Sigma70 1180709 1180714 TTCAAT 21 1180682 1180687 TATGAA 1180677 2.763 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTCAATtcgagtatcggcagcgattttTATGAAgacaGcgaag 1179702 1180490 R ycfZ ycfZp7 Sigma70 1180542 1180547 TTTATT 18 1180518 1180523 TAAAAA 1180512 3.518 good homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcggTTTATTaataagtatgccctcctcTAAAAAatcacGcagga 1181006 1182052 R potD potDp1 Sigma70 1182234 1182239 TTTCTT 20 1182208 1182213 TATGAA 1182202 1.994 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtagTTTCTTcgttcgtcaccggaccaagtTATGAAattctGccgtt 1181006 1182052 R potD potDp5 Sigma70 1182102 1182107 TTGCCA 19 1182077 1182082 TAAAAC 1182071 2.89 poor homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggttaTTGCCAgccagcttattgctcgTGaTAAAACgaaagGtaaca 1181006 1182052 R potD potDp6 Sigma70 1182102 1182107 TTGCCA 17 1182079 1182084 GATAAA 1182073 4.336 high homology 7.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTGCCAgccagcttattgctcgtGATAAAacgaaAggtaa 1186342 1187463 R ycfD ycfDp4 Sigma70 1187521 1187526 TTCACG 19 1187496 1187501 TATAAT 1187490 4.23 high homology 1.65E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catacTTCACGcattacgttaagcatccgtTATAATcggttGcagat 1187539 1188999 R phoQ phoQp1 Sigma70 1189224 1189229 ATCAAA 20 1189198 1189203 TATTAT 1189193 2.804 poor homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtgATCAAActgaccgcgttcgaatacacTATTATggaaAcgttg 1187539 1188999 R phoQ phoQp3 Sigma70 1189224 1189229 ATCAAA 15 1189203 1189208 TACACT 1189197 3 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtgATCAAActgaccgcgttcgaaTACACTattatGgaaac 1189839 1191209 R purB purBp2 Sigma70 1191378 1191383 CTGCAA 17 1191355 1191360 GAAAGT 1191350 3.296 good homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaCTGCAAagcccacaagtgcaggcGAAAGTtcgcGcaacc 1193050 1193511 R nudJ nudJp2 Sigma70 1193580 1193585 ATGCGA 19 1193555 1193560 TAATCT 1193549 2.41 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctATGCGAtgggtgattactctttggaTAATCTtgccaAtggtg 1193050 1193511 R nudJ nudJp4 Sigma70 1193590 1193595 CTGATT 18 1193566 1193571 TACTCT 1193561 3.128 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgaCTGATTcgctatgcgatgggtgatTACTCTttggAtaatc 1193050 1193511 R nudJ nudJp5 Sigma70 1193580 1193585 ATGCGA 17 1193557 1193562 GATAAT 1193550 3.306 good homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctATGCGAtgggtgattactctttgGATAATcttgccAatggt 1196090 1196755 R ymfD ymfDp1 Sigma70 1196875 1196880 TTTTAT 19 1196850 1196855 TATCTT 1196843 2.33 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtaaTTTTATcattctcagtgagtggtatTATCTTtgctttGacagt 1196090 1196755 R ymfD ymfDp2 Sigma70 1196897 1196902 CTGTCT 19 1196872 1196877 TATCAT 1196866 2.37 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttgCTGTCTttattcttttttgtaatttTATCATtctcaGtgagt 1196090 1196755 R ymfD ymfDp4 Sigma70 1196786 1196791 ATAAAA 17 1196763 1196768 TAACAT 1196757 3.416 good homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaATAAAAgaatttttcactaaaaaTAACATtaattGaatgg 1196090 1196755 R ymfD ymfDp5 Sigma70 1196875 1196880 TTTTAT 16 1196853 1196858 TATTAT 1196848 3.683 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgtaaTTTTATcattctcagtgagTGgTATTATctttGctttg 1196090 1196755 R ymfD ymfDp6 Sigma70 1196840 1196845 TTGACA 15 1196819 1196824 GAAAGT 1196812 4.33 high homology 1.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTGACAgttaagcccagaactGAAAGTcaagtcGgaaaa 1196090 1196755 R ymfD ymfDp7 Sigma70 1196911 1196916 TTGAAG 15 1196890 1196895 TATTCT 1196884 4.97 high homology 1.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatgTTGAAGgttctttgctgtcttTATTCTtttttGtaatt 1197918 1198811 F lit litp2 Sigma70 1197823 1197828 TTCATT 19 1197848 1197853 TAGAAA 1197859 2.25 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gataaTTCATTacgcatatagtatcgaacaTAGAAAaaactGaagat 1197918 1198811 F lit litp3 Sigma70 1197725 1197730 ATGACA 18 1197749 1197754 GATGGT 1197760 2.588 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgATGACAgagtgtccagtgggcacgGATGGTgtcttAcgaca 1197918 1198811 F lit litp4 Sigma70 1197813 1197818 ATGTCG 15 1197834 1197839 TATAGT 1197845 2.76 poor homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaacATGTCGataattcattacgcaTATAGTatcgaAcatag 1197918 1198811 F lit litp5 Sigma70 1197781 1197786 TTCCCA 21 1197808 1197813 TAAACA 1197819 2.903 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTCCCAgtgtgcctatagcagatattcTAAACAtgtcgAtaatt 1197918 1198811 F lit litp8 Sigma70 1197781 1197786 TTCCCA 16 1197803 1197808 TATTCT 1197813 3.993 good homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTCCCAgtgtgcctatagcagaTATTCTaaacAtgtcg 1197918 1198811 F lit litp9 Sigma70 1197857 1197862 CTGAAG 17 1197880 1197885 TATACT 1197891 4.696 high homology 4.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaCTGAAGattcatcttattttgtaTATACTacctaGcccaa 1198902 1200029 R intE intEp1 Sigma70 1200195 1200200 CTCCAA 20 1200169 1200174 TATGCT 1200163 1.834 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatcCTCCAAgtgtgtccacattgcgtcgtTATGCTaagcaGaattt 1198902 1200029 R intE intEp4 Sigma70 1200238 1200243 TTAACT 18 1200214 1200219 GAAAAA 1200208 2.418 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTAACTcttgaagaatgggctgctGAAAAAtacagAagtaa 1198902 1200029 R intE intEp6 Sigma70 1200178 1200183 TTGCGT 19 1200153 1200158 TATTTT 1200148 3.36 good homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacaTTGCGTcgttatgctaagcagaattTATTTTgtccAccggc 1198902 1200029 R intE intEp7 Sigma70 1200231 1200236 TTGAAG 17 1200208 1200213 TACAGA 1200203 3.976 good homology 0.000118571 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactcTTGAAGaatgggctgctgaaaaaTACAGAagtaAtcctc 1200720 1201061 F ymfI ymfIp3 Sigma70 1200655 1200660 TTTTCA 18 1200679 1200684 TATGCT 1200689 3.728 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctgtcTTTTCAccacttcaggctcggTGgTATGCTggagTtctca 1200999 1201307 R ymfJ ymfJp1 Sigma70 1201444 1201449 TTTATA 19 1201419 1201424 GATACA 1201414 2.13 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttttTTTATActtgacaatgtaccttTGaGATACAtaatGtaccc 1200999 1201307 R ymfJ ymfJp2 Sigma70 1201444 1201449 TTTATA 21 1201417 1201422 TACATA 1201412 2.203 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTTATActtgacaatgtacctttgagaTACATAatgtAcccaa 1200999 1201307 R ymfJ ymfJp3 Sigma70 1201515 1201520 TTCTCA 15 1201494 1201499 TACAAA 1201488 2.3 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTCTCAggaaaaccaagaagaTACAAAatcaaAgccta 1200999 1201307 R ymfJ ymfJp6 Sigma70 1201467 1201472 ATGAAC 19 1201442 1201447 TATACT 1201436 3.68 good homology 4.28E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttATGAACctgcttcggcaggttttttTATACTtgacaAtgtac 1200999 1201307 R ymfJ ymfJp8 Sigma70 1201437 1201442 TTGACA 16 1201415 1201420 CATAAT 1201408 4.263 high homology 1.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatacTTGACAatgtacctttgagataCATAATgtacccAagaga 1200999 1201307 R ymfJ ymfJp10 Sigma70 1201437 1201442 TTGACA 18 1201413 1201418 TAATGT 1201407 5.228 high homology 5.96E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatacTTGACAatgtacctttgagatacaTAATGTacccaAgagaa 1201482 1202156 R cohE cohEp1 Sigma70 1202274 1202279 TTCTTT 16 1202252 1202257 TACGCT 1202246 2.083 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgTTCTTTggttaaagagtcccaaTACGCTttcatAcaata 1201482 1202156 R cohE cohEp2 Sigma70 1202247 1202252 TTTCAT 21 1202220 1202225 CATATT 1202214 2.093 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgcTTTCATacaatatgtacctccggtgtaCATATTacatgAttgaa 1201482 1202156 R cohE cohEp3 Sigma70 1202246 1202251 TTCATA 18 1202222 1202227 TACATA 1202217 2.388 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgctTTCATAcaatatgtacctccggtgTACATAttacAtgatt 1201482 1202156 R cohE cohEp6 Sigma70 1202216 1202221 TTACAT 19 1202191 1202196 GATACT 1202186 3.23 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acataTTACATgattgaaatgaaccttcaaGATACTtgtaCcttaa 1201482 1202156 R cohE cohEp8 Sigma70 1202208 1202213 TTGAAA 19 1202183 1202188 TACCTT 1202178 3.76 good homology 8.72E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgaTTGAAAtgaaccttcaagatacttgTACCTTaacgGtacaa 1201482 1202156 R cohE cohEp9 Sigma70 1202266 1202271 TTAAAG 18 1202242 1202247 TACAAT 1202237 4.198 high homology 7.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttggTTAAAGagtcccaatacgctttcaTACAATatgtAcctcc 1202247 1202447 F croE croEp1 Sigma70 1202197 1202202 TTGAAG 19 1202222 1202227 TATGTA 1202233 2.51 poor homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatcTTGAAGgttcatttcaatcatgtaaTATGTAcaccgGaggta 1202247 1202447 F croE croEp3 Sigma70 1202152 1202157 TTCATA 18 1202176 1202181 TACCGT 1202186 2.958 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTCATAacgaaattaaaacccttgTACCGTtaagGtacaa 1202247 1202447 F croE croEp5 Sigma70 1202197 1202202 TTGAAG 16 1202219 1202224 TAATAT 1202229 4.713 high homology 1.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatcTTGAAGgttcatttcaatcatgTAATATgtacAccgga 1207740 1208342 R tfaE tfaEp2 Sigma70 1208536 1208541 TTAATT 21 1208509 1208514 TAAATA 1208503 2.263 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgaTTAATTtctattttgatgaaatatgggTAAATAgtggcActgac 1207740 1208342 R tfaE tfaEp3 Sigma70 1208554 1208559 TTGTGA 20 1208528 1208533 TATTTT 1208522 2.724 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgaTTGTGActgatgcaacgattaatttcTATTTTgatgaAatatg 1207740 1208342 R tfaE tfaEp5 Sigma70 1208435 1208440 TTTAAA 18 1208411 1208416 GATGGT 1208406 3.118 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaccTTTAAAacatataaacaatcagtgGATGGTttagGtgccg 1208908 1209462 F pinE pinEp1 Sigma70 1208713 1208718 TTGCCA 20 1208739 1208744 GAAAAA 1208750 2.724 poor homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcctTTGCCAgttccgggtattcttcagcaGAAAAAgcggcAccatt 1209569 1210402 F mcrA mcrAp1 Sigma70 1209371 1209376 TTGCAG 16 1209393 1209398 GAAGGT 1209403 2.393 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTGCAGcaggaactcctcgccaGAAGGTggcgAttatc 1209569 1210402 F mcrA mcrAp2 Sigma70 1209430 1209435 TTGTAT 20 1209456 1209461 TAAATA 1209467 2.464 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caactTTGTATaagaggtttcctgcaggggaTAAATAaagttAaagac 1209569 1210402 F mcrA mcrAp6 Sigma70 1209465 1209470 TTAAAG 17 1209488 1209493 GAAAGT 1209499 3.386 good homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaagTTAAAGacactttgtgtacaaaaGAAAGTaaaacAacagc 1209569 1210402 F mcrA mcrAp8 Sigma70 1209511 1209516 TTGCAA 15 1209532 1209537 TAGTAT 1209542 4.72 high homology 1.37E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttgTTGCAAttttatcaataaaagTAGTATtgtcGtgaaa 1209569 1210402 F mcrA mcrAp9 Sigma70 1209511 1209516 TTGCAA 18 1209535 1209540 TATTGT 1209546 5.318 high homology 8.05E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttgTTGCAAttttatcaataaaagtagTATTGTcgtgaAaaatt 1211926 1212330 R ycgX ycgXp1 Sigma70 1212488 1212493 TTGTAC 16 1212466 1212471 CAAAAT 1212461 2.273 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgtTTGTACcggagctggtccgttgCAAAATgctcAccggg 1211926 1212330 R ycgX ycgXp3 Sigma70 1212390 1212395 TTGAAG 17 1212367 1212372 CACACT 1212361 3.746 good homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagaTTGAAGtggtaaaaccgatcgtgCACACTacgcaGtctca 1211926 1212330 R ycgX ycgXp4 Sigma70 1212538 1212543 TTTATC 20 1212512 1212517 TATAAT 1212507 3.764 good homology 2.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcaccTTTATCccgccccttagacagaaTGtTATAATctgaAcccac 1211926 1212330 R ycgX ycgXp5 Sigma70 1212469 1212474 TTGCAA 21 1212442 1212447 GATATT 1212435 4.053 high homology 2.37E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccgTTGCAAaatgctcaccgggagaattcaGATATTccctctAtcaca 1213487 1214698 R ycgF ycgFp1 Sigma70 1214904 1214909 GTGCTA 20 1214878 1214883 TATGAT 1214872 2.074 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aattaGTGCTAatgcatataaaacaatgTGtTATGATaaaacAtattg 1213487 1214698 R ycgF ycgFp2 Sigma70 1214735 1214740 TTACCG 21 1214708 1214713 TACCCT 1214702 2.193 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctgTTACCGtcttactctcgcctcacccatTACCCTggattGttaat 1213487 1214698 R ycgF ycgFp3 Sigma70 1214798 1214803 TTATCA 15 1214777 1214782 TATGTT 1214771 2.81 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attttTTATCAatgtaaagaaacggtTATGTTttggtAttaaa 1213487 1214698 R ycgF ycgFp6 Sigma70 1214771 1214776 TTGGTA 17 1214748 1214753 GAAGAT 1214741 3.916 good homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgttTTGGTAttaaaagaaagacacaaGAAGATatgtctGttacc 1213487 1214698 R ycgF ycgFp7 Sigma70 1214864 1214869 TTGCAT 16 1214842 1214847 TATACA 1214836 4.243 high homology 2.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acataTTGCATcatttaactgacaatcTATACAagattTttcgc 1216551 1218074 F ycgG ycgGp1 Sigma70 1216377 1216382 CTTATT 15 1216398 1216403 TATGCT 1216409 2.28 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctaaCTTATTttgtactgcctacatTATGCTcaataAttaat 1216551 1218074 F ycgG ycgGp3 Sigma70 1216438 1216443 TTTTAT 19 1216463 1216468 TATGCT 1216473 3.16 good homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTTTATcttcggcgtggatatttctTATGCTctctAccatg 1216551 1218074 F ycgG ycgGp4 Sigma70 1216410 1216415 TTAATG 17 1216433 1216438 GAAAAT 1216443 3.636 good homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTAATGggttagatcaagatggaGAAAATtttaTcttcg 1218206 1218424 F ymgF ymgFp2 Sigma70 1217973 1217978 ATCACA 21 1218000 1218005 TATAAA 1218012 2.233 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatATCACAtttcagcagggttattatttcTATAAAcctgttAcatac 1218206 1218424 F ymgF ymgFp3 Sigma70 1218067 1218072 TTGAGT 19 1218092 1218097 CATAGT 1218103 2.48 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggTTGAGTgaaaattgatcagtaaggcCATAGTgcggtGtaatt 1218206 1218424 F ymgF ymgFp4 Sigma70 1218117 1218122 CTAATT 17 1218140 1218145 TACTAT 1218151 2.836 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gacagCTAATTagctcgttgcctctTGtTACTATtgttcAttatt 1218206 1218424 F ymgF ymgFp5 Sigma70 1218121 1218126 TTAGCT 16 1218143 1218148 TATTGT 1218154 3.043 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctaaTTAGCTcgttgcctcttgttacTATTGTtcattAttttg 1218206 1218424 F ymgF ymgFp7 Sigma70 1218129 1218134 TTGCCT 15 1218150 1218155 CATTAT 1218160 3.39 good homology 9.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcgTTGCCTcttgttactattgttCATTATtttgTttgct 1218206 1218424 F ymgF ymgFp8 Sigma70 1218010 1218015 TTACAT 19 1218035 1218040 TATCCT 1218046 3.4 good homology 0.00016826 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctgTTACATacatcgacctggtcaaaatTATCCTttctaAaccga 1218206 1218424 F ymgF ymgFp9 Sigma70 1217968 1217973 ATTATA 17 1217991 1217996 TATTAT 1218001 3.996 good homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaaaATTATAtcacatttcagcagggtTATTATttctAtaaac 1218206 1218424 F ymgF ymgFp10 Sigma70 1218139 1218144 TTACTA 20 1218165 1218170 TATAAT 1218176 4.294 high homology 1.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcttgTTACTAttgttcattattttgttTGcTATAATtgtttGaaagt 1218206 1218424 F ymgF ymgFp11 Sigma70 1218129 1218134 TTGCCT 18 1218153 1218158 TATTTT 1218163 4.788 high homology 2.65E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcgTTGCCTcttgttactattgttcatTATTTTgtttGctata 1221528 1221857 R ymgD ymgDp1 Sigma70 1222046 1222051 TTGGCG 20 1222020 1222025 GAAAAA 1222015 1.494 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctgTTGGCGctggtgttggtgcagtaacaGAAAAAggccGcgacg 1225823 1226191 F ycgJ ycgJp1 Sigma70 1225623 1225628 TTTCCA 16 1225645 1225650 TAAAGA 1225655 2.703 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaacTTTCCAttttttgcggcatcatTAAAGAacagAtaccc 1225823 1226191 F ycgJ ycgJp3 Sigma70 1225771 1225776 TTGATG 21 1225798 1225803 TACGGT 1225810 3.263 good homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggaTTGATGatgaaatgagcataagtgttgTACGGTtggattAtcagg 1225823 1226191 F ycgJ ycgJp5 Sigma70 1225667 1225672 TTAATA 18 1225691 1225696 TATCAT 1225701 4.238 high homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTAATAtccgccacagaattgctcTATCATagaaAccgca 1226294 1226695 R pliG pliGp2 Sigma70 1226740 1226745 TTGTTA 18 1226716 1226721 TACTCA 1226710 2.748 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaTTGTTAtattataacagttcatcgTACTCAttctgAacagg 1226294 1226695 R pliG pliGp4 Sigma70 1226761 1226766 CTGGAA 19 1226736 1226741 TATATT 1226730 3.04 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agccaCTGGAAttctcccgttagggatTGtTATATTataacAgttca 1226294 1226695 R pliG pliGp5 Sigma70 1226921 1226926 TTTAAG 16 1226899 1226904 TAAGCT 1226892 3.243 good homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactcTTTAAGatgccaggttttggcaTAAGCTaacatcAatgaa 1226294 1226695 R pliG pliGp6 Sigma70 1226915 1226920 ATGCCA 15 1226894 1226899 TAACAT 1226888 3.31 good homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaagATGCCAggttttggcataagcTAACATcaatgAaaccc 1226294 1226695 R pliG pliGp7 Sigma70 1226761 1226766 CTGGAA 21 1226734 1226739 TATTAT 1226729 3.363 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccaCTGGAAttctcccgttagggattgttaTATTATaacaGttcat 1227302 1227961 F ycgM ycgMp1 Sigma70 1227115 1227120 TTAAAC 20 1227141 1227146 TACTAT 1227152 2.774 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaggTTAAACaggcattaaccgagcaaggtTACTATttgcaGttacc 1227302 1227961 F ycgM ycgMp3 Sigma70 1227147 1227152 TTGCAG 15 1227168 1227173 GAAGAT 1227179 3.11 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actatTTGCAGttaccgccaccacccGAAGATttgctGaagca 1228038 1228499 F ycgN ycgNp3 Sigma70 1227994 1227999 TTGCAT 19 1228019 1228024 TAAGGT 1228031 4.11 high homology 3.30E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacTTGCATcgctgtgccagactggttaTAAGGTgcgtttTaacgt 1228038 1228499 F ycgN ycgNp5 Sigma70 1227941 1227946 TTGACA 15 1227962 1227967 TACTTT 1227973 4.4 high homology 1.18E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGACAactcgcgttttgtaaTACTTTttgccGcctga 1231723 1232253 R dsbB dsbBp1 Sigma70 1232312 1232317 CTGGTG 20 1232286 1232291 TAAACT 1232281 2.004 poor homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctcCTGGTGgcgcagcgaatgaattggttTAAACTgcgcActcta 1231723 1232253 R dsbB dsbBp2 Sigma70 1232297 1232302 ATGAAT 19 1232272 1232277 TATGCA 1232267 2.2 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgaATGAATtggtttaaactgcgcactcTATGCAtattGcaggg 1231723 1232253 R dsbB dsbBp4 Sigma70 1232292 1232297 TTGGTT 18 1232268 1232273 CATATT 1232262 2.678 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaTTGGTTtaaactgcgcactctatgCATATTgcaggGaaatg 1231723 1232253 R dsbB dsbBp5 Sigma70 1232371 1232376 ATGCCC 17 1232348 1232353 GATAAT 1232342 3.356 good homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tataaATGCCCggtttgccttttcgcccGATAATtgtccAattgc 1231723 1232253 R dsbB dsbBp6 Sigma70 1232397 1232402 TTGATA 15 1232376 1232381 TATAAA 1232370 4.79 high homology 1.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgctTTGATAacaacttaccgggcaTATAAAtgcccGgtttg 1232399 1233940 R nhaB nhaBp1 Sigma70 1234056 1234061 TTCATT 20 1234030 1234035 GACTAT 1234025 1.874 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaggcTTCATTttccgcatctctttccccttGACTATcaagActtgc 1232399 1233940 R nhaB nhaBp2 Sigma70 1234007 1234012 CTGCCT 19 1233982 1233987 TAAACA 1233976 2.13 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactcCTGCCTgaccgttaagctttgcgttTAAACAtaaaaAcatca 1232399 1233940 R nhaB nhaBp4 Sigma70 1233989 1233994 TTGCGT 20 1233963 1233968 GATTAT 1233957 2.674 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagctTTGCGTttaaacataaaaacatcattGATTATttgtaAggtaa 1232399 1233940 R nhaB nhaBp5 Sigma70 1234124 1234129 TTGGAC 21 1234097 1234102 TACGCT 1234092 3.003 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaagTTGGACtcatcataccagagggctaacTACGCTgataGcagac 1232399 1233940 R nhaB nhaBp7 Sigma70 1234018 1234023 TTGCCT 17 1233995 1234000 TAAGCT 1233990 5.436 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagacTTGCCTcactcctgcctgaccgtTAAGCTttgcGtttaa 1239558 1241294 R cvrA cvrAp1 Sigma70 1241361 1241366 GTAAAA 15 1241340 1241345 TAATAT 1241334 2.02 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctaaGTAAAAcgctgtctctgccgcTAATATggtagGgttta 1239558 1241294 R cvrA cvrAp4 Sigma70 1241496 1241501 TTGGTC 16 1241474 1241479 TACGCT 1241467 2.663 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgattTTGGTCatgaacaacgcacggtTACGCTgccgttGggcgc 1239558 1241294 R cvrA cvrAp6 Sigma70 1241419 1241424 TTGACG 20 1241393 1241398 TAAAAT 1241387 4.864 high homology 5.34E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcagTTGACGattagcggtcatcctgttctTAAAATgtaaaAaaatc 1241389 1242303 R ldcA ldcAp4 Sigma70 1242486 1242491 TTCGCG 16 1242464 1242469 TATAGT 1242459 2.963 poor homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaactTTCGCGttccacggcgggttcgTATAGTcatgCtttga 1242403 1243014 F emtA emtAp4 Sigma70 1242313 1242318 TTGCTG 19 1242338 1242343 TATCAT 1242348 3.84 good homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attccTTGCTGacaacagaaacgaaatgtaTATCATgccgCttagg 1243951 1244205 F ymgE ymgEp2 Sigma70 1243718 1243723 TTGTTT 16 1243740 1243745 TAATGA 1243751 2.153 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggattTTGTTTcaggaactgctcaTGgTAATGActcacGcggaa 1243951 1244205 F ymgE ymgEp3 Sigma70 1243799 1243804 TTAACA 19 1243824 1243829 GAATAT 1243835 2.99 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacagTTAACAaaacttaatacaaatgcgtGAATATtttttAcatgt 1243951 1244205 F ymgE ymgEp4 Sigma70 1243884 1243889 TTGCCT 18 1243908 1243913 TAAGCA 1243920 3.438 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcccTTGCCTatacttagagcgttgatgTAAGCAtttcttGcgtcc 1244383 1244823 F ycgY ycgYp2 Sigma70 1244182 1244187 TTCCGC 15 1244203 1244208 TAAGAT 1244213 1.92 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcataTTCCGCctcctgcgaagagaaTAAGATtttcAtaagg 1244383 1244823 F ycgY ycgYp3 Sigma70 1244295 1244300 ATCAAT 19 1244320 1244325 TAAAGT 1244331 2.57 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaATCAATatagcacttcgatatccgaTAAAGTcggttCccggt 1244383 1244823 F ycgY ycgYp5 Sigma70 1244140 1244145 TTCCTG 17 1244163 1244168 TATTCT 1244175 4.016 high homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagcTTCCTGgtggcggtggtgggagcTATTCTcgttctGggcat 1252308 1255175 R ycgV ycgVp1 Sigma70 1255235 1255240 TTCATT 16 1255213 1255218 CAAAAT 1255207 2.363 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tattaTTCATTgatttaaacaaaaTGaCAAAATccataGaccca 1252308 1255175 R ycgV ycgVp2 Sigma70 1255266 1255271 ATACAA 20 1255240 1255245 TATTAT 1255234 2.594 poor homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaccATACAAatatcatgatgataagaggaTATTATtcattGattta 1252308 1255175 R ycgV ycgVp3 Sigma70 1255277 1255282 ATGATT 18 1255253 1255258 GATGAT 1255247 2.708 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcATGATTgcaccatacaaatatcatGATGATaagagGatatt 1252308 1255175 R ycgV ycgVp4 Sigma70 1255252 1255257 ATGATA 21 1255225 1255230 TAAACA 1255219 2.713 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatgATGATAagaggatattattcattgattTAAACAaaatgAcaaaa 1252308 1255175 R ycgV ycgVp8 Sigma70 1255322 1255327 CTGATT 19 1255297 1255302 TATTCT 1255291 3.32 good homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttcCTGATTttgcccggtaatagagaatTATTCTctgagAagctc 1252308 1255175 R ycgV ycgVp9 Sigma70 1255362 1255367 TTGTAA 17 1255339 1255344 TATTAA 1255333 4.516 high homology 9.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctTTGTAAgggggatgttaaatataTATTAAttcctGtgttc 1252308 1255175 R ycgV ycgVp10 Sigma70 1255362 1255367 TTGTAA 15 1255341 1255346 TATATT 1255334 4.83 high homology 1.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctTTGTAAgggggatgttaaataTATATTaattccTgtgtt 1258347 1260026 R ychM ychMp1 Sigma70 1260253 1260258 ATCAAA 17 1260230 1260235 TACTCT 1260223 3.276 good homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaATCAAAtcactgccgaacgtgcgTACTCTgaccctGtcagg 1268391 1268498 R ldrA ldrAp2 Sigma70 1268713 1268718 ATGAAG 18 1268689 1268694 TAGTAT 1268684 3.028 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggATGAAGtgaagatgaattgagtcgTAGTATccacAccaag 1268391 1268498 R ldrA ldrAp8 Sigma70 1268730 1268735 TTGCAA 18 1268706 1268711 GAAGAT 1268700 4.098 high homology 3.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcaTTGCAAacatttcagggatgaagtGAAGATgaattGagtcg 1268546 1268612 F rdlA rdlAp1 Sigma70 1268391 1268396 TTACTT 18 1268415 1268420 GACAAT 1268425 2.938 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccTTACTTccggttacgccaccagctGACAATcgctGcggta 1268546 1268612 F rdlA rdlAp5 Sigma70 1268511 1268516 TTGTAA 17 1268534 1268539 TATTCT 1268546 5.696 high homology 1.48E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttgTTGTAAtgacaacattttgcggcTATTCTtgaattGttctg 1268926 1269033 R ldrB ldrBp1 Sigma70 1269118 1269123 GTAAAA 20 1269092 1269097 TAATCT 1269087 1.334 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagagGTAAAAcctgacaacagaacgggggcTAATCTtgaaAccaga 1268926 1269033 R ldrB ldrBp3 Sigma70 1269248 1269253 ATGAAG 18 1269224 1269229 TAGTAT 1269219 3.028 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggATGAAGtgaagatgaattgagacgTAGTATccacAccaag 1268926 1269033 R ldrB ldrBp5 Sigma70 1269265 1269270 TTGCAA 18 1269241 1269246 GAAGAT 1269235 4.098 high homology 3.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTGCAAacatttcagggatgaagtGAAGATgaattGagacg 1269081 1269146 F rdlB rdlBp2 Sigma70 1268926 1268931 TTACTT 18 1268950 1268955 GACAAT 1268960 2.938 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccTTACTTccggttacgccaccagccGACAATcgctGcggta 1269081 1269146 F rdlB rdlBp4 Sigma70 1269046 1269051 TTGTAA 17 1269069 1269074 TATTCT 1269079 5.696 high homology 1.48E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttgTTGTAAtgacaacattttgcggcTATTCTtgaaGtgtct 1269461 1269568 R ldrC ldrCp1 Sigma70 1269653 1269658 GTAAAA 20 1269627 1269632 TAATCT 1269622 1.334 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagagGTAAAAcctgacaacaaaacgggggcTAATCTtgaaAccaga 1269461 1269568 R ldrC ldrCp2 Sigma70 1269782 1269787 ATGAAG 18 1269758 1269763 TAGTAT 1269753 3.028 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggATGAAGtgaagatgaattgcgacgTAGTATccacAccaag 1269461 1269568 R ldrC ldrCp4 Sigma70 1269799 1269804 TTGCAA 18 1269775 1269780 GAAGAT 1269769 4.098 high homology 3.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcaTTGCAAacatttcagggatgaagtGAAGATgaattGcgacg 1269616 1269683 F rdlC rdlCp1 Sigma70 1269461 1269466 TTACTT 18 1269485 1269490 GACAAT 1269495 2.938 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccTTACTTccggttacgccaccagctGACAATcgctGcggta 1269616 1269683 F rdlC rdlCp3 Sigma70 1269581 1269586 TTGTAA 17 1269604 1269609 TATTCT 1269614 5.696 high homology 1.48E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttgTTGTAAtgacaacattttgcggcTATTCTtgaaGtgtct 1269972 1271072 R chaA chaAp1 Sigma70 1271133 1271138 TTTCTG 21 1271106 1271111 TACATT 1271101 2.543 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacacTTTCTGttatttttcctacctatttttTACATTttcgAtaaat 1269972 1271072 R chaA chaAp3 Sigma70 1271151 1271156 TTACCG 19 1271126 1271131 TATTTT 1271121 2.66 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaatgTTACCGatatccagacactttcTGtTATTTTtcctAcctat 1269972 1271072 R chaA chaAp4 Sigma70 1271316 1271321 TTGAAC 15 1271295 1271300 CAATAT 1271289 2.76 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaagTTGAACattaagtgtggtcaaCAATATctactCttgcc 1269972 1271072 R chaA chaAp7 Sigma70 1271122 1271127 TTTCCT 21 1271095 1271100 TAAATT 1271089 3.683 good homology 0.00012465 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTCCTacctattttttacattttcgaTAAATTcatctGcaaag 1271342 1271572 F chaB chaBp1 Sigma70 1271129 1271134 ATAACA 19 1271154 1271159 TAACAT 1271165 2.26 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaATAACAgaaagtgtctggatatcggTAACATtttacGaattt 1271342 1271572 F chaB chaBp2 Sigma70 1271249 1271254 TTAAGA 21 1271276 1271281 TATGTT 1271287 2.573 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctcTTAAGAagagtctgacctgaaaattctTATGTTttggcAagagt 1271342 1271572 F chaB chaBp3 Sigma70 1271272 1271277 TTCTTA 18 1271296 1271301 TATTGT 1271307 3.238 good homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTCTTAtgttttggcaagagtagaTATTGTtgaccAcactt 1272469 1272822 R ychN ychNp1 Sigma70 1272927 1272932 TTTTCT 20 1272901 1272906 TAAAAA 1272896 2.154 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtaTTTTCTcgcgctttcaggaaaatcctTAAAAAtgtgAccgat 1272469 1272822 R ychN ychNp2 Sigma70 1272935 1272940 TTGTCG 19 1272910 1272915 GAAAAT 1272904 3.03 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacttTTGTCGtattttctcgcgctttcagGAAAATccttaAaaatg 1272469 1272822 R ychN ychNp3 Sigma70 1272886 1272891 TTGGTC 17 1272863 1272868 TAAGAT 1272857 4.226 high homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgaTTGGTCagacgctgcagaagcagTAAGATagaagAtgagt 1274402 1275052 R narL narLp1 Sigma70 1275180 1275185 ATGATA 18 1275156 1275161 CAAAGT 1275150 2.148 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggcATGATAataatgcgcgatcgtgcgCAAAGTttacgAggcga 1286310 1286399 R tpr tprp1 Sigma70 1286439 1286444 TTCCCA 17 1286416 1286421 TATTCT 1286411 4.996 high homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaacTTCCCAacgaatccgcaattaaaTATTCTgcccAtgcgg 1287005 1287847 R purU purUp3 Sigma70 1288005 1288010 TTGAAA 20 1287979 1287984 TATTGA 1287974 3.504 good homology 8.63E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGAAAgaaaacggtcaatggtactaTATTGAcggtAcacgt 1287005 1287847 R purU purUp4 Sigma70 1288005 1288010 TTGAAA 15 1287984 1287989 TACTAT 1287979 5.29 high homology 2.15E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatttTTGAAAgaaaacggtcaaTGgTACTATattgAcggta 1287005 1287847 R purU purUp5 Sigma70 1288005 1288010 TTGAAA 18 1287981 1287986 TATATT 1287976 5.928 high homology 9.28E-07 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGAAAgaaaacggtcaatggtacTATATTgacgGtacac 1292750 1293367 F tdk tdkp2 Sigma70 1292674 1292679 CTGTTG 19 1292699 1292704 TATGAT 1292711 1.83 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcataCTGTTGagctgaaaaactgacgaatTATGATaaactcCagcca 1292750 1293367 F tdk tdkp3 Sigma70 1292563 1292568 TTACCA 19 1292588 1292593 TAACAA 1292599 2.03 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatagTTACCAgcagtcatttacccgcttaTAACAAgcgagGcagtt 1292750 1293367 F tdk tdkp4 Sigma70 1292530 1292535 TTACTT 15 1292551 1292556 GATTGT 1292562 2.25 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggctaTTACTTgcgcaacaggttaaaGATTGTgaataGttacc 1292750 1293367 F tdk tdkp6 Sigma70 1292603 1292608 TTGTAA 17 1292626 1292631 TATGCA 1292638 4.046 high homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcagTTGTAAtgatagctcagaaggatTATGCAaggcttCgtaag 1292750 1293367 F tdk tdkp8 Sigma70 1292682 1292687 CTGAAA 16 1292704 1292709 TAAACT 1292716 4.153 high homology 3.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttgagCTGAAAaactgacgaattaTGaTAAACTccagccAacttt 1297821 1298468 F ychE ychEp1 Sigma70 1297622 1297627 ATTATA 19 1297647 1297652 TAGTAT 1297658 2.01 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgccATTATAgctaacagttaataaattgTAGTATgatttGgtggc 1297821 1298468 F ychE ychEp2 Sigma70 1297614 1297619 TTTTCG 20 1297640 1297645 TAAATT 1297651 2.204 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTTTCGccattatagctaacagttaaTAAATTgtagtAtgatt 1297821 1298468 F ychE ychEp3 Sigma70 1297769 1297774 TTTCAA 16 1297791 1297796 CATTAT 1297801 2.503 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtctTTTCAAccttatttatggctaaCATTATccggCttttg 1297821 1298468 F ychE ychEp4 Sigma70 1297623 1297628 TTATAG 21 1297650 1297655 TATGAT 1297661 2.793 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaTTATAGctaacagttaataaattgtagTATGATttggtGgctac 1297821 1298468 F ychE ychEp5 Sigma70 1297755 1297760 TTGTCA 17 1297778 1297783 TATTTA 1297789 3.636 good homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaTTGTCAgcgcgtcttttcaacctTATTTAtggctAacatt 1304845 1305174 R yciU yciUp1 Sigma70 1305334 1305339 CTGACC 20 1305308 1305313 TATATT 1305303 2.534 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtgCTGACCtcgccgccgttcaggacgatTATATTtcgcGttcac 1304845 1305174 R yciU yciUp2 Sigma70 1305229 1305234 TTTACT 17 1305206 1305211 TAAAAC 1305199 3.036 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgtTTTACTtcttcagtccgttgctgTAAAACgtcgccAacaga 1304845 1305174 R yciU yciUp3 Sigma70 1305212 1305217 TTGCTG 21 1305185 1305190 TAAACA 1305180 3.113 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccgTTGCTGtaaaacgtcgccaacagaggtTAAACAggtaGtaact 1304845 1305174 R yciU yciUp4 Sigma70 1305415 1305420 TTGGCA 19 1305390 1305395 TAGTCT 1305383 3.72 good homology 7.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTGGCAcagttaaccttgatatgcgTAGTCTgtggctAaattt 1304845 1305174 R yciU yciUp6 Sigma70 1305400 1305405 TTGATA 15 1305379 1305384 TAAATT 1305373 5.1 high homology 1.09E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaccTTGATAtgcgtagtctgtggcTAAATTtcgagAttacc 1306812 1306985 F yciY yciYp1 Sigma70 1306706 1306711 TTTACG 21 1306733 1306738 TAAAAA 1306744 2.823 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgagTTTACGcatatggattcatctggcaaaTAAAAAcgcggGaaaag 1309872 1310270 R yciA yciAp1 Sigma70 1310489 1310494 CTGCCG 20 1310463 1310468 TAAAGT 1310457 2.354 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggCTGCCGcaaaatatttgggtcaacttTAAAGTctttgGcctga 1309872 1310270 R yciA yciAp2 Sigma70 1310341 1310346 CTGTAT 18 1310317 1310322 GAAAAT 1310312 2.468 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgCTGTATctcctctgttctcctcagGAAAATcataGtagca 1309872 1310270 R yciA yciAp4 Sigma70 1310465 1310470 TTTAAA 20 1310439 1310444 TACCTT 1310432 2.494 poor homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaacTTTAAAgtctttggcctgaccgccctTACCTTaatcttCacatt 1309872 1310270 R yciA yciAp7 Sigma70 1310455 1310460 TTGGCC 15 1310434 1310439 TAATCT 1310429 3.67 good homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtctTTGGCCtgaccgcccttacctTAATCTtcacAttgtt 1310375 1310914 R yciB yciBp1 Sigma70 1310962 1310967 CTGTAT 15 1310941 1310946 TAACCT 1310935 2.2 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccgcCTGTATatgttgattcgccaaTAACCTtaagcAtttga 1310375 1310914 R yciB yciBp2 Sigma70 1310983 1310988 TTGCTC 20 1310957 1310962 TATGTT 1310951 2.874 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccataTTGCTCatctatctgttccgcctgtaTATGTTgattcGccaat 1312742 1313248 R yciE yciEp1 Sigma70 1313285 1313290 ATGAAT 20 1313259 1313264 TAAAGA 1313254 2.124 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatATGAATtttaacttttagtcattttaTAAAGAggacAttttc 1312742 1313248 R yciE yciEp2 Sigma70 1313449 1313454 TTGCCA 16 1313427 1313432 GACGCT 1313421 3.053 poor homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgagaTTGCCAgttacgggacattagcGACGCTggctgAacaat 1312742 1313248 R yciE yciEp3 Sigma70 1313285 1313290 ATGAAT 18 1313261 1313266 TATAAA 1313256 3.678 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatATGAATtttaacttttagtcatttTATAAAgaggAcattt 1312742 1313248 R yciE yciEp5 Sigma70 1313326 1313331 TTAATA 17 1313303 1313308 GAAAAT 1313298 4.396 high homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggccaTTAATAacgtaaataagaaagccGAAAATaaagCctgaa 1314440 1315246 R trpA trpAp2 Sigma70 1315429 1315434 TTCAAA 20 1315403 1315408 GATCAT 1315398 2.534 poor homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagccTTCAAAacgctgtgcctgcacgaaggGATCATcccgGcgctg 1314440 1315246 R trpA trpAp4 Sigma70 1315360 1315365 TTGAAA 20 1315334 1315339 TAAAGA 1315327 3.774 good homology 6.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTGAAAatgatgcgcgaaaacccggaTAAAGAgcagctActggt 1314440 1315246 R trpA trpAp5 Sigma70 1315360 1315365 TTGAAA 18 1315336 1315341 GATAAA 1315330 4.108 high homology 9.54E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTGAAAatgatgcgcgaaaacccgGATAAAgagcaGctact 1324876 1325751 F rluB rluBp1 Sigma70 1324677 1324682 TTAATC 21 1324704 1324709 GATAGT 1324715 2.233 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTAATCgaaacaagctttaaccataaaGATAGTgtagtAtgttg 1324876 1325751 F rluB rluBp2 Sigma70 1324785 1324790 TTTACT 16 1324807 1324812 TAAGTT 1324817 3.123 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagacTTTACTatcagtgagtcagatgTAAGTTctgaCtcact 1328441 1328692 R yciN yciNp1 Sigma70 1328824 1328829 CTGATA 21 1328797 1328802 TAGCAT 1328791 2.393 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtacCTGATAaaatccgatacgcaactttatTAGCATgcaaaAtccaa 1328441 1328692 R yciN yciNp3 Sigma70 1328847 1328852 TTGACG 19 1328822 1328827 GATAAA 1328816 2.8 poor homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagaTTGACGaaagcgtcacactgtacctGATAAAatccgAtacgc 1328441 1328692 R yciN yciNp5 Sigma70 1328855 1328860 TTGCCA 15 1328834 1328839 CACACT 1328827 3.29 good homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctaTTGCCAgattgacgaaagcgtCACACTgtacctGataaa 1328441 1328692 R yciN yciNp10 Sigma70 1328741 1328746 TTGTCT 17 1328718 1328723 TAGACT 1328713 5.036 high homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatTTGTCTgcaagccatgcctggcgTAGACTaatgTccttg 1328441 1328692 R yciN yciNp11 Sigma70 1328847 1328852 TTGACG 21 1328820 1328825 TAAAAT 1328814 5.213 high homology 5.34E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccagaTTGACGaaagcgtcacactgtaccTGaTAAAATccgatAcgcaa 1333184 1333312 F ymiA ymiAp1 Sigma70 1333028 1333033 TTTCAG 15 1333049 1333054 TATTCA 1333060 2.28 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctaTTTCAGgtcaaaagattgaatTATTCActggaGacgat 1333184 1333312 F ymiA ymiAp2 Sigma70 1333139 1333144 TTCAAC 21 1333166 1333171 GATTAT 1333177 2.463 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTCAACgtcttgctgataagtgatggcGATTATatgagGttagc 1333184 1333312 F ymiA ymiAp4 Sigma70 1333065 1333070 TTCGTA 19 1333090 1333095 TAAAGT 1333102 3.14 good homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgaTTCGTAaattcgctggatttttgacTAAAGTttctttAggatt 1333184 1333312 F ymiA ymiAp5 Sigma70 1332942 1332947 TTTTTA 18 1332966 1332971 TAAATT 1332976 3.448 good homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTTTTAtccctcatatttatagggTAAATTacctGtaaag 1333184 1333312 F ymiA ymiAp6 Sigma70 1333095 1333100 TTTCTT 17 1333118 1333123 TATGAT 1333129 4.696 high homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaagTTTCTTtaggatttgtctcatcgTATGATtaattAcacca 1333184 1333312 F ymiA ymiAp7 Sigma70 1333043 1333048 TTGAAT 20 1333069 1333074 TAAATT 1333080 4.724 high homology 5.40E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaTTGAATtattcactggagacgattcgTAAATTcgctgGatttt 1337354 1338118 F pgpB pgpBp1 Sigma70 1337174 1337179 TTAAGC 16 1337196 1337201 GATAAT 1337206 2.013 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgtTTAAGCtgcatgaaattctccaGATAATgctgGttctg 1337354 1338118 F pgpB pgpBp3 Sigma70 1337297 1337302 TTTCCT 21 1337324 1337329 GATTGT 1337334 2.433 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caattTTTCCTggaactggcgttttcagttatGATTGTgggaCttatc 1337354 1338118 F pgpB pgpBp4 Sigma70 1337224 1337229 TTGCCA 19 1337249 1337254 TAATCA 1337259 3.44 good homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTGCCAtaacgagaaggggttcaccTAATCAcgacGcgtcg 1337354 1338118 F pgpB pgpBp6 Sigma70 1337148 1337153 TTGGCA 21 1337175 1337180 TAAGCT 1337186 4.183 high homology 4.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggggTTGGCAgtttggcttctgccacacgttTAAGCTgcatgAaattc 1337354 1338118 F pgpB pgpBp7 Sigma70 1337297 1337302 TTTCCT 18 1337321 1337326 TATGAT 1337332 4.308 high homology 7.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caattTTTCCTggaactggcgttttcagtTATGATtgtggGactta 1341621 1342370 R yciT yciTp5 Sigma70 1342429 1342434 TTGAGG 16 1342407 1342412 TATTTT 1342400 3.153 good homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctatTTGAGGatgcccggcgcgtcagTATTTTtttattAagtat 1341621 1342370 R yciT yciTp6 Sigma70 1342557 1342562 TTACCA 21 1342530 1342535 GATACT 1342525 3.433 good homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgaTTACCActctgcgatccataatctcgaGATACTtaaaGcagaa 1347004 1348131 R yciW yciWp1 Sigma70 1348278 1348283 CTGAAA 15 1348257 1348262 TAAAGA 1348251 2.59 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcgaaCTGAAAtaatcgttctgtTGgTAAAGAtgggcGgcgtt 1349852 1350658 R sapF sapFp1 Sigma70 1350775 1350780 TTGTCG 19 1350750 1350755 TATGCA 1350744 2.13 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attggTTGTCGtctggggccacgttgcccgTATGCAcaacgAgaatg 1349852 1350658 R sapF sapFp4 Sigma70 1350843 1350848 ATGCCG 17 1350820 1350825 TACGCT 1350814 3.066 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcgATGCCGcataaaagtcgcctcaaTACGCTgcccgGcgcta 1355447 1355692 R ymjA ymjAp1 Sigma70 1355756 1355761 ATGTAT 18 1355732 1355737 TATCAT 1355726 3.138 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaaagATGTATgacccggatcacgagTGcTATCATccgccCttatg 1360767 1362254 F puuC puuCp3 Sigma70 1360646 1360651 TTGAAG 17 1360669 1360674 GAATGT 1360680 3.946 good homology 0.00012341 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggcTTGAAGgatgaagtgtatataaaGAATGTcgccaGaaata 1368240 1369919 F ycjM ycjMp1 Sigma70 1368098 1368103 TTATTT 15 1368119 1368124 TACGCT 1368130 2.33 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atagaTTATTTgcgtcagctcacaaaTACGCTttttcCctggt 1368240 1369919 F ycjM ycjMp3 Sigma70 1368176 1368181 TTGACA 17 1368199 1368204 TAGTCT 1368209 5.556 high homology 8.63E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcaaTTGACAgtttattttctgcggagTAGTCTctcgTttcat 1379971 1380876 F ompG ompGp1 Sigma70 1379754 1379759 GTGGCA 20 1379780 1379785 TATGCT 1379790 1.614 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagcGTGGCAgaattaaccggtgcggaattTATGCTctacAccacg 1379971 1380876 F ompG ompGp2 Sigma70 1379839 1379844 TTATCA 18 1379863 1379868 TATTCA 1379874 2.498 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTATCAtgcaggagaaaatatcacTATTCAttttgAtatga 1379971 1380876 F ompG ompGp5 Sigma70 1379831 1379836 TTAAAT 15 1379852 1379857 GAAAAT 1379864 3.67 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcgTTAAATgattatcatgcaggaGAAAATatcactAttcat 1380987 1381985 R ycjW ycjWp1 Sigma70 1382085 1382090 ATGAAT 20 1382059 1382064 TATCAA 1382052 1.904 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggatATGAATgtgggggccaggccattgatTATCAActgcccGtgttg 1380987 1381985 R ycjW ycjWp2 Sigma70 1382044 1382049 TTGTCA 17 1382021 1382026 TAAGAT 1382015 5.256 high homology 3.75E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgTTGTCAtcgaccggcgaactccaTAAGATgtgcaGcattc 1387894 1388622 R mpaA mpaAp1 Sigma70 1388740 1388745 ATGCAA 20 1388714 1388719 GATACA 1388708 1.454 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaATGCAAacaacttccggcaaaaaagtGATACAagatcGatgac 1387894 1388622 R mpaA mpaAp2 Sigma70 1388691 1388696 TTGAAG 19 1388666 1388671 CAAAAT 1388661 3.24 good homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcgTTGAAGaaaaggatttgataatccgCAAAATttgcAcaaca 1387894 1388622 R mpaA mpaAp3 Sigma70 1388702 1388707 ATGACA 21 1388675 1388680 GATAAT 1388669 3.593 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgATGACAtagcgttgaagaaaaggatttGATAATccgcaAaattt 1388957 1389877 R ycjY ycjYp1 Sigma70 1390014 1390019 TTCATT 21 1389987 1389992 TAATCA 1389981 2.213 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgcTTCATTcagtatctccatgcaatctatTAATCAtttaaAtgata 1388957 1389877 R ycjY ycjYp2 Sigma70 1389946 1389951 ATCAAC 15 1389925 1389930 TATAGT 1389918 2.37 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctaATCAACttaatgatcaatatcTATAGTgatatcAccaac 1388957 1389877 R ycjY ycjYp3 Sigma70 1389981 1389986 TTTAAA 16 1389959 1389964 GATTTT 1389952 2.743 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTTAAAtgataggtctaatcatGATTTTgggtctAatcaa 1388957 1389877 R ycjY ycjYp5 Sigma70 1390014 1390019 TTCATT 18 1389990 1389995 TATTAA 1389983 3.078 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgcTTCATTcagtatctccatgcaatcTATTAAtcatttAaatga 1390015 1390914 F ycjZ ycjZp1 Sigma70 1389906 1389911 TTTAAC 21 1389933 1389938 TATTGA 1389944 1.923 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgtTTTAACggttggtgatatcactatagaTATTGAtcattAagttg 1390015 1390914 F ycjZ ycjZp2 Sigma70 1389905 1389910 TTTTAA 20 1389931 1389936 GATATT 1389941 2.114 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttcgTTTTAAcggttggtgatatcactataGATATTgatcAttaag 1390015 1390914 F ycjZ ycjZp3 Sigma70 1389951 1389956 TTAGAC 19 1389976 1389981 TATCAT 1389986 2.41 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTAGACccaaaatcatgattagaccTATCATttaaAtgatt 1390015 1390914 F ycjZ ycjZp4 Sigma70 1389905 1389910 TTTTAA 16 1389927 1389932 TATAGA 1389938 2.503 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttcgTTTTAAcggttggtgatatcacTATAGAtattgAtcatt 1390015 1390914 F ycjZ ycjZp5 Sigma70 1389843 1389848 TTGCTG 19 1389868 1389873 TATTCA 1389880 2.75 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTGCTGttagtgaagctgactttatTATTCAtcattcCgttcc 1390015 1390914 F ycjZ ycjZp6 Sigma70 1389769 1389774 TTGCCT 18 1389793 1389798 CAAATT 1389804 3.088 poor homology 0.000139144 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacaaTTGCCTgatactgacgggtttcatCAAATTttggaGggaaa 1390015 1390914 F ycjZ ycjZp9 Sigma70 1389935 1389940 TTGATC 17 1389958 1389963 CAAAAT 1389968 3.836 good homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTGATCattaagttgattagaccCAAAATcatgAttaga 1391251 1392864 F mppA mppAp1 Sigma70 1391186 1391191 TTGCAT 19 1391211 1391216 TAATTA 1391223 2.75 poor homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgtTTGCATttctttaaggcgaaacaaaTAATTAcgcatcAatttt 1391251 1392864 F mppA mppAp6 Sigma70 1391040 1391045 TTGAAC 16 1391062 1391067 TAGTGT 1391073 3.373 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggtTTGAACgtgcgaagcccgaacgTAGTGTtcggaGttcta 1391251 1392864 F mppA mppAp7 Sigma70 1391105 1391110 TTATTT 18 1391129 1391134 TATATT 1391139 3.438 good homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gactaTTATTTacactaaatctgattTGaTATATTgataCttaaa 1391251 1392864 F mppA mppAp9 Sigma70 1391125 1391130 TTGATA 20 1391151 1391156 GATGCT 1391163 3.454 good homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTGATAtattgatacttaaaacatttGATGCTtcctttGtcact 1391251 1392864 F mppA mppAp12 Sigma70 1391108 1391113 TTTACA 17 1391131 1391136 TATTGA 1391142 3.726 good homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTTACActaaatctgatttgataTATTGAtacttAaaaca 1391251 1392864 F mppA mppAp13 Sigma70 1391108 1391113 TTTACA 21 1391135 1391140 GATACT 1391145 3.823 good homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTTACActaaatctgatttgatatattGATACTtaaaAcattt 1394100 1395116 F insH insHp1 Sigma70 1393942 1393947 ATCATT 19 1393967 1393972 GATAAT 1393977 1.89 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcgATCATTgttttatcaggctcctccaGATAATtgtcGtcatg 1394100 1395116 F insH insHp2 Sigma70 1394006 1394011 TTTACC 15 1394027 1394032 GATCAT 1394038 2.19 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTTACCgcgacaattcattcaGATCATcaataGtcagg 1394100 1395116 F insH insHp5 Sigma70 1393980 1393985 ATGCCG 17 1394003 1394008 TATTTT 1394014 3.386 good homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtcATGCCGgaaacccctggcggggcTATTTTaccgcGacaat 1395389 1395646 F ynaJ ynaJp1 Sigma70 1395211 1395216 ATGAAA 19 1395236 1395241 GAATTT 1395246 1.95 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaATGAAAtgactgagtcagccgagaaGAATTTccccGcttat 1395389 1395646 F ynaJ ynaJp2 Sigma70 1395259 1395264 TTCCCT 16 1395281 1395286 GATTGT 1395293 2.223 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaccTTCCCTaactaatcaatgcgttGATTGTaaatccAgctaa 1402765 1403673 F abgR abgRp2 Sigma70 1402664 1402669 TTCACA 19 1402689 1402694 TACCCT 1402700 3.07 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTCACAgttttaaccgttcataaatTACCCTgacacAatcat 1402765 1403673 F abgR abgRp4 Sigma70 1402662 1402667 TTTTCA 16 1402684 1402689 TAAATT 1402695 3.273 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTTTCAcagttttaaccgttcaTAAATTaccctGacaca 1402765 1403673 F abgR abgRp5 Sigma70 1402688 1402693 TTACCC 18 1402712 1402717 TAAAGT 1402722 3.458 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTACCCtgacacaatcatctgcatTAAAGTagatGccagt 1402765 1403673 F abgR abgRp6 Sigma70 1402521 1402526 ATGAAA 16 1402543 1402548 GATAAT 1402554 3.653 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tagtgATGAAAatcacgtcgccagTGcGATAATtttggGgcaag 1403676 1403833 R isrA isrAp1 Sigma70 1403893 1403898 TTTTAA 20 1403867 1403872 TATTCA 1403861 1.974 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTTTAAgcaaaatacttatgcatgatTATTCAttcacGatatt 1403676 1403833 R isrA isrAp2 Sigma70 1403924 1403929 TTCCAG 21 1403897 1403902 GATATT 1403892 2.113 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatTTCCAGtaataagttccaaatattgccGATATTttaaGcaaaa 1403676 1403833 R isrA isrAp3 Sigma70 1403911 1403916 TTCCAA 15 1403890 1403895 TAAGCA 1403885 2.31 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataagTTCCAAatattgccgatatttTAAGCAaaatActtat 1403676 1403833 R isrA isrAp4 Sigma70 1403902 1403907 TTGCCG 19 1403877 1403882 TATGCA 1403871 2.71 poor homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGCCGatattttaagcaaaatactTATGCAtgattAttcat 1403676 1403833 R isrA isrAp5 Sigma70 1403892 1403897 TTTAAG 16 1403870 1403875 GATTAT 1403863 2.773 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTTAAGcaaaatacttatgcatGATTATtcattcAcgata 1403676 1403833 R isrA isrAp7 Sigma70 1403872 1403877 ATGATT 18 1403848 1403853 TAATGT 1403842 3.348 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcATGATTattcattcacgatattaaTAATGTaacttAtattt 1404003 1404566 F ydaL ydaLp2 Sigma70 1403757 1403762 TTGTCT 21 1403784 1403789 TATAAC 1403796 2.493 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cggcaTTGTCTcctctgcgccggtgactgTGtTATAACggttttAacctt 1404003 1404566 F ydaL ydaLp3 Sigma70 1403813 1403818 TTTCTT 16 1403835 1403840 GAAAAT 1403845 3.003 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaatTTTCTTcagtgacagatttcacGAAAATataaGttaca 1404003 1404566 F ydaL ydaLp4 Sigma70 1403830 1403835 TTCACG 19 1403855 1403860 TAATAT 1403866 3.38 good homology 0.000166586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagatTTCACGaaaatataagttacattatTAATATcgtgaAtgaat 1404003 1404566 F ydaL ydaLp6 Sigma70 1403944 1403949 TTGTTG 17 1403967 1403972 TATCAT 1403978 4.326 high homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacgTTGTTGgaccgacccggtctggtTATCATatcgcGctctt 1409037 1409972 R ttcA ttcAp4 Sigma70 1410113 1410118 ATGAAA 17 1410090 1410095 GAAATT 1410085 3.576 good homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggcATGAAActgcgcagatggtgtatGAAATTtacgGtatgt 1409037 1409972 R ttcA ttcAp5 Sigma70 1410039 1410044 TTGAAT 18 1410015 1410020 CAAAGT 1410009 3.708 good homology 3.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccatgTTGAATgcgcggttatcgtagttgCAAAGTttgccCccaat 1415512 1415787 R racC racCp1 Sigma70 1415861 1415866 TTTAAT 19 1415836 1415841 GAATTT 1415830 2.19 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaacTTTAATtaattgactattcgaaactGAATTTatgccAgaaat 1415512 1415787 R racC racCp3 Sigma70 1415933 1415938 TTTTAT 15 1415912 1415917 GAAAAT 1415906 2.9 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggaTTTTATcaaaagacgaaccgaGAAAATattgcAgtgaa 1415862 1416032 R ydaE ydaEp1 Sigma70 1416189 1416194 TTATGT 19 1416164 1416169 TATATT 1416158 2.23 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgaTTATGTtcttcatgaaggccggacaTATATTgcctcGgcaaa 1415862 1416032 R ydaE ydaEp2 Sigma70 1416099 1416104 ATTCAT 15 1416078 1416083 TAAAGT 1416071 2.69 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacATTCATtactgaccgcatgatTAAAGTcttcctCggtcg 1415862 1416032 R ydaE ydaEp4 Sigma70 1416142 1416147 TTAAAA 19 1416117 1416122 TAACCT 1416112 3.6 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTAAAAagcgaaaactatatattcgTAACCTgaccAcaaaa 1415862 1416032 R ydaE ydaEp5 Sigma70 1416273 1416278 TTCATT 18 1416249 1416254 TATGAT 1416243 4.198 high homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaagTTCATTtgtaaaaatggagataatTATGATtgcacAtcact 1416695 1417183 F sieB sieBp1 Sigma70 1416657 1416662 TTAACA 19 1416682 1416687 GAGAGT 1416693 2.36 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtgTTAACAtttcaatacccttacagttGAGAGTtattgAtatgt 1416695 1417183 F sieB sieBp3 Sigma70 1416529 1416534 TTTAAA 16 1416551 1416556 GACTCT 1416562 2.683 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caccaTTTAAAtttaacagacaagaccGACTCTttatgGatatc 1416695 1417183 F sieB sieBp6 Sigma70 1416652 1416657 TTGTGT 17 1416675 1416680 TACAGT 1416686 3.996 good homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagcTTGTGTtaacatttcaataccctTACAGTtgagaGttatt 1417789 1418265 R racR racRp2 Sigma70 1418314 1418319 ATGCAG 17 1418291 1418296 TAATGT 1418285 3.426 good homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctaATGCAGtaagggtagggattgccTAATGTaatgcGcatag 1417789 1418265 R racR racRp3 Sigma70 1418296 1418301 TTGCCT 16 1418274 1418279 GAGAAT 1418268 3.603 good homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaTTGCCTaatgtaatgcgcatagGAGAATattaaGcaatg 1417789 1418265 R racR racRp4 Sigma70 1418506 1418511 TTGACG 21 1418479 1418484 TACGCT 1418473 3.833 good homology 6.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcaaTTGACGtacccctttgatccattgattTACGCTtggagGtgata 1417789 1418265 R racR racRp5 Sigma70 1418296 1418301 TTGCCT 18 1418272 1418277 GAATAT 1418266 4.068 high homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaTTGCCTaatgtaatgcgcataggaGAATATtaagcAatgct 1418389 1418685 F ydaS ydaSp1 Sigma70 1418140 1418145 ATAAAT 17 1418163 1418168 TAAAGT 1418174 3.716 good homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtcATAAATtgatggtggttggacttTAAAGTggcgtGcgacc 1418389 1418685 F ydaS ydaSp2 Sigma70 1418265 1418270 TTGCTT 19 1418290 1418295 TACATT 1418301 4.01 good homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTGCTTaatattctcctatgcgcatTACATTaggcaAtccct 1418389 1418685 F ydaS ydaSp4 Sigma70 1418252 1418257 TTACCA 15 1418273 1418278 TATTCT 1418284 4.24 high homology 4.97E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtctTTACCActaagcattgcttaaTATTCTcctatGcgcat 1418389 1418685 F ydaS ydaSp6 Sigma70 1418333 1418338 TTGACA 18 1418357 1418362 TAATAT 1418367 5.778 high homology 2.57E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctaTTGACAattgcgttaggcgtcgccTAATATttctGtgtgt 1421806 1423263 F trkG trkGp1 Sigma70 1421728 1421733 ATCTAA 21 1421755 1421760 TATAAT 1421765 2.843 poor homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaagATCTAAgaggagttaaattttatacagTATAATcataAtattg 1421806 1423263 F trkG trkGp2 Sigma70 1421768 1421773 TTGCAG 20 1421794 1421799 GAATAT 1421804 2.884 poor homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTGCAGcaaggtggttataattgaaaGAATATttagAtatga 1421806 1423263 F trkG trkGp3 Sigma70 1421641 1421646 ATACAT 19 1421666 1421671 TAAAAT 1421676 2.92 poor homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaATACATaaccgagcagtgtttaaagTAAAATcttaActaca 1421806 1423263 F trkG trkGp4 Sigma70 1421740 1421745 TTAAAT 15 1421761 1421766 CATAAT 1421772 3.21 good homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggagTTAAATtttatacagtataatCATAATattgcAgcaag 1421806 1423263 F trkG trkGp5 Sigma70 1421697 1421702 ATGATT 21 1421724 1421729 TAAGAT 1421735 3.273 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttgATGATTgtttcataaggaacagtgaagTAAGATctaagAggagt 1421806 1423263 F trkG trkGp7 Sigma70 1421659 1421664 TTTAAA 18 1421683 1421688 TATGAT 1421695 4.888 high homology 2.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtgTTTAAAgtaaaatcttaactacaaTATGATtcatttTgatga 1421806 1423263 F trkG trkGp8 Sigma70 1421740 1421745 TTAAAT 17 1421763 1421768 TAATAT 1421773 5.166 high homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggagTTAAATtttatacagtataatcaTAATATtgcaGcaagg 1423401 1423664 F ynaK ynaKp3 Sigma70 1423275 1423280 TTTATA 16 1423297 1423302 TATGTT 1423308 3.393 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaTTTATAattgtgagtttaatatTATGTTgactcActcat 1423401 1423664 F ynaK ynaKp4 Sigma70 1423301 1423306 TTGACT 19 1423326 1423331 TAACTT 1423337 3.83 good homology 3.30E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatgTTGACTcactcattgatccaataccTAACTTtaccaGcaaca 1423401 1423664 F ynaK ynaKp6 Sigma70 1423234 1423239 TTGTTT 21 1423261 1423266 TAATAT 1423273 4.123 high homology 6.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTGTTTtcaggttttttttggcgctccTAATATatggctGattta 1423401 1423664 F ynaK ynaKp8 Sigma70 1423251 1423256 TTGGCG 20 1423277 1423282 TATAAT 1423288 4.394 high homology 8.98E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGGCGctcctaatatatggctgattTATAATtgtgaGtttaa 1423401 1423664 F ynaK ynaKp9 Sigma70 1423271 1423276 CTGATT 17 1423294 1423299 TATTAT 1423304 4.586 high homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatggCTGATTtataattgtgagtttaaTATTATgttgActcac 1423401 1423664 F ynaK ynaKp10 Sigma70 1423211 1423216 TTGAAA 15 1423232 1423237 TATTGT 1423243 5.38 high homology 1.93E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgccTTGAAAtttatcctgttattaTATTGTtttcaGgtttt 1425770 1426750 R insH insHp1 Sigma70 1426928 1426933 ATCAAT 20 1426902 1426907 TAAACT 1426897 2.664 poor homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaatATCAATggccacggattcggtcgggtTAAACTgcacGccagc 1431108 1431698 R pinR pinRp2 Sigma70 1431794 1431799 TTTATT 20 1431768 1431773 TATGCA 1431762 2.074 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgTTTATTttcgaacgtgtacatacaaaTATGCAcaaaaAtaatc 1431108 1431698 R pinR pinRp3 Sigma70 1431767 1431772 ATGCAC 15 1431746 1431751 TATTTT 1431740 2.48 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatATGCACaaaaataatcataatTATTTTctgagAtgcat 1431108 1431698 R pinR pinRp4 Sigma70 1431754 1431759 ATCATA 19 1431729 1431734 TATGAT 1431724 2.49 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataATCATAattattttctgagatgcatTATGATatgaAcacca 1431108 1431698 R pinR pinRp7 Sigma70 1431728 1431733 ATGATA 17 1431705 1431710 TAGAGT 1431698 4.086 high homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattATGATAtgaacaccaatttcgtaTAGAGTctcactAtgtct 1432015 1432281 R ynaE ynaEp1 Sigma70 1432386 1432391 TTCAGC 19 1432361 1432366 TAAAAT 1432355 2.8 poor homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTCAGCatttttagtcatgctctaaTAAAATtagggAttggc 1432015 1432281 R ynaE ynaEp2 Sigma70 1432469 1432474 TTGTCA 21 1432442 1432447 TACTAA 1432436 2.803 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTGTCAactatatcatatataacacatTACTAAttcgaGgctat 1433784 1434917 R ompN ompNp1 Sigma70 1435102 1435107 TTTTAT 20 1435076 1435081 TACATT 1435070 2.484 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTTTATtttgtatgtattatcttcgaTACATTcaccaGactta 1433784 1434917 R ompN ompNp3 Sigma70 1435130 1435135 ATAACG 16 1435108 1435113 TATAAT 1435103 2.913 poor homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaATAACGtatagcaaattaaaagTATAATttttAttttg 1433784 1434917 R ompN ompNp4 Sigma70 1435038 1435043 TTGATT 18 1435014 1435019 TAACAA 1435008 3.468 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTGATTaaggttttacttaaggcgTAACAAatgatAtttat 1433784 1434917 R ompN ompNp5 Sigma70 1435081 1435086 TTCGAT 17 1435058 1435063 TATCAT 1435052 4.106 high homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTCGATacattcaccagacttatTATCATttcagAggaat 1433784 1434917 R ompN ompNp6 Sigma70 1435115 1435120 TTAAAA 21 1435088 1435093 TATTAT 1435082 4.683 high homology 2.04E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTAAAAgtataatttttattttgtatgTATTATcttcgAtacat 1435284 1438808 R ydbK ydbKp1 Sigma70 1438923 1438928 CTGATG 16 1438901 1438906 GAAAAT 1438895 2.073 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttacgCTGATGtgggggacacaaaagcGAAAATgcagaAgaaag 1435284 1438808 R ydbK ydbKp4 Sigma70 1438897 1438902 ATGCAG 15 1438876 1438881 TAAAAT 1438870 3.7 good homology 7.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgaaaATGCAGaagaaagccattTGcTAAAATtgaaaGattac 1441075 1443714 F ydbH ydbHp1 Sigma70 1440932 1440937 TTTAAT 19 1440957 1440962 GAAAAA 1440969 2.15 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaaaTTTAATtgaaagctatggcgatattGAAAAAttcatcAacaac 1441075 1443714 F ydbH ydbHp3 Sigma70 1440926 1440931 TTCAAA 21 1440953 1440958 TATTGA 1440963 2.663 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTCAAAtttaattgaaagctatggcgaTATTGAaaaaTtcatc 1441075 1443714 F ydbH ydbHp4 Sigma70 1441041 1441046 TTAATT 16 1441063 1441068 TATTAA 1441075 2.763 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcTTAATTtttcgctaaatcaggaTATTAActacccAtgctg 1441075 1443714 F ydbH ydbHp7 Sigma70 1440926 1440931 TTCAAA 19 1440951 1440956 GATATT 1440962 3.06 poor homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTCAAAtttaattgaaagctatggcGATATTgaaaaAttcat 1441075 1443714 F ydbH ydbHp9 Sigma70 1440887 1440892 TTGAAT 20 1440913 1440918 TATTTT 1440924 4.454 high homology 7.66E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTGAATcacatttaagctactaaaaaTATTTTacaaaAtttca 1465945 1466850 R insD insDp1 Sigma70 1466951 1466956 TTGCTG 16 1466929 1466934 TAAAGA 1466923 2.733 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaacTTGCTGccgccatgaagcagatTAAAGAactccAgcgcc 1467382 1468533 F insI insIp1 Sigma70 1467184 1467189 ATGACT 20 1467210 1467215 GACTAT 1467221 1.834 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctccaATGACTagtctaaaaactagtattaaGACTATcacttAtttaa 1467382 1468533 F insI insIp3 Sigma70 1467276 1467281 TTACTT 16 1467298 1467303 GAAAAT 1467309 2.903 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agaacTTACTTatgctgattccggTGcGAAAATtgttaAtaaag 1467382 1468533 F insI insIp4 Sigma70 1467206 1467211 TTAAGA 17 1467229 1467234 GATATT 1467239 3.146 good homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtaTTAAGActatcacttatttaagtGATATTggttGtctgg 1472245 1473105 F ydbC ydbCp1 Sigma70 1472174 1472179 TTCGCA 21 1472201 1472206 TATACT 1472212 4.103 high homology 2.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaccTTCGCAttatttatctcttttcgtttcTATACTgatttTtctta 1475645 1476250 F ynbA ynbAp1 Sigma70 1475505 1475510 TTAATT 16 1475527 1475532 GACAGT 1475538 2.273 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgaTTAATTggggataatcattcctGACAGTgagtcCccaat 1475645 1476250 F ynbA ynbAp2 Sigma70 1475604 1475609 TTGATG 20 1475630 1475635 TATCAA 1475641 2.484 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggaaTTGATGcaccatagcgcaaaccgaatTATCAAggattGataat 1475645 1476250 F ynbA ynbAp4 Sigma70 1475493 1475498 TTAACT 17 1475516 1475521 TAATCA 1475527 3.486 good homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTAACTatctgattaattggggaTAATCAttcctGacagt 1475645 1476250 F ynbA ynbAp5 Sigma70 1475458 1475463 TTGATG 20 1475484 1475489 TAATGT 1475495 3.534 good homology 8.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacTTGATGagttgtattgatccacaacgTAATGTtttttAactat 1475645 1476250 F ynbA ynbAp7 Sigma70 1475493 1475498 TTAACT 15 1475514 1475519 GATAAT 1475526 3.87 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTAACTatctgattaattgggGATAATcattccTgacag 1480279 1480884 R azoR azoRp2 Sigma70 1481008 1481013 TTTCTA 19 1480983 1480988 GAACAT 1480976 2.08 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggcTTTCTAtgcgttgttcaataaattcGAACATaggcttCgattt 1480279 1480884 R azoR azoRp3 Sigma70 1481091 1481096 TTGTTC 21 1481064 1481069 TAGTCT 1481058 2.573 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttgTTGTTCtgtcataacgttagtgggcagTAGTCTgcctgAttaat 1480279 1480884 R azoR azoRp4 Sigma70 1480968 1480973 TTTATT 18 1480944 1480949 GATTGT 1480938 2.868 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgaTTTATTgcgctatctctgtggcagGATTGTgaataAagtgt 1480279 1480884 R azoR azoRp5 Sigma70 1481052 1481057 TTAATT 19 1481027 1481032 TAGAGT 1481021 3.16 good homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaTTAATTttcttttaaatgatagataTAGAGTaccacAtcgcg 1480279 1480884 R azoR azoRp7 Sigma70 1481052 1481057 TTAATT 17 1481029 1481034 TATAGA 1481023 3.766 good homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaTTAATTttcttttaaatgatagaTATAGAgtaccAcatcg 1481085 1484987 F hrpA hrpAp1 Sigma70 1480986 1480991 TTCGAA 16 1481008 1481013 TAGAAA 1481019 2.063 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctatgTTCGAAtttattgaacaacgcaTAGAAAgccgcGatgtg 1485259 1486059 F ydcF ydcFp2 Sigma70 1485042 1485047 TTTATT 19 1485067 1485072 TAAAAA 1485078 3.06 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtttTTTATTaattctaaaacggtaagggTAAAAAttcagGaattc 1485259 1486059 F ydcF ydcFp3 Sigma70 1485192 1485197 TTTCAG 17 1485215 1485220 TATTAT 1485226 4.706 high homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctccTTTCAGagtgctccgcttctcacTATTATctcacGcagta 1488926 1489456 F cybB cybBp1 Sigma70 1488842 1488847 CTGAAA 16 1488864 1488869 TAATGA 1488876 1.863 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtaCTGAAAacgggtgaacaatattTAATGAaattttGagaaa 1488926 1489456 F cybB cybBp2 Sigma70 1488842 1488847 CTGAAA 20 1488868 1488873 GAAATT 1488879 2.034 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtaCTGAAAacgggtgaacaatatttaatGAAATTttgagAaaagc 1488926 1489456 F cybB cybBp3 Sigma70 1488740 1488745 TTTTCT 20 1488766 1488771 GAAAAT 1488777 2.324 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catggTTTTCTcctgtcaggaacgttcggatGAAAATtgatcCtttcc 1488926 1489456 F cybB cybBp4 Sigma70 1488862 1488867 TTTAAT 21 1488889 1488894 TATGTT 1488900 3.533 good homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTTAATgaaattttgagaaaagcccgtTATGTTaacggAaaatt 1488926 1489456 F cybB cybBp6 Sigma70 1488874 1488879 TTGAGA 19 1488899 1488904 GAAAAT 1488911 3.69 good homology 9.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaattTTGAGAaaagcccgttatgttaacgGAAAATtatgttAaagca 1489701 1489874 F ydcA ydcAp1 Sigma70 1489661 1489666 TTCAAA 15 1489682 1489687 GATAAA 1489693 2.69 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacgTTCAAAtcgaacataagattcGATAAAccatgGaggtt 1489701 1489874 F ydcA ydcAp3 Sigma70 1489573 1489578 TTGCCC 16 1489595 1489600 TATTTT 1489606 3.673 good homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccTTGCCCatacgtccatctggctTATTTTtaatcAattca 1489701 1489874 F ydcA ydcAp5 Sigma70 1489542 1489547 TTTATT 17 1489565 1489570 CATAAT 1489575 3.836 good homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTTATTtgtatgataaataaaacCATAATccttGcccat 1489946 1490095 R hokB hokBp1 Sigma70 1490274 1490279 TTATTT 20 1490248 1490253 TAGGAT 1490243 1.774 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgaTTATTTtcgtccctaaggaaacctcaTAGGATgcctGcgggt 1489946 1490095 R hokB hokBp2 Sigma70 1490171 1490176 TTTCTA 19 1490146 1490151 GAACCT 1490141 1.87 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTTCTAtcaaccgaggccaacgaatGAACCTagcaAttcag 1489986 1490153 R mokB mokBp1 Sigma70 1490274 1490279 TTATTT 20 1490248 1490253 TAGGAT 1490243 1.774 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgaTTATTTtcgtccctaaggaaacctcaTAGGATgcctGcgggt 1489986 1490153 R mokB mokBp2 Sigma70 1490397 1490402 TTTTTA 16 1490375 1490380 GAAAAT 1490370 2.623 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaTTTTTAcaacaattattgcataGAAAATtaatGctatt 1489986 1490153 R mokB mokBp3 Sigma70 1490361 1490366 TTGGAA 20 1490335 1490340 TAAACT 1490329 4.734 high homology 5.84E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaTTGGAAtgaagagagtaacgaatggcTAAACTggctaAcccga 1490143 1490198 F sokB sokBp1 Sigma70 1489900 1489905 ATGAAT 20 1489926 1489931 GAAAAT 1489936 2.844 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaaaATGAATctgctagtcaaatgcgcgggGAAAATccccGcgctt 1490143 1490198 F sokB sokBp3 Sigma70 1490107 1490112 TTGCCG 17 1490130 1490135 TAAGAT 1490140 5.076 high homology 6.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctccTTGCCGgatggcgggtaagaggcTAAGATctgaAttgct 1492172 1493095 R ydcI ydcIp1 Sigma70 1493212 1493217 ATCAAT 16 1493190 1493195 TAACAT 1493185 2.133 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacATCAATattatccattttgctgTAACATaattGcttta 1492172 1493095 R ydcI ydcIp2 Sigma70 1493193 1493198 CTGTAA 21 1493166 1493171 TAATAT 1493160 2.963 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttgCTGTAAcataattgctttaattgttaaTAATATtttgcAatcaa 1492172 1493095 R ydcI ydcIp3 Sigma70 1493260 1493265 TTCACT 15 1493239 1493244 TACAAA 1493233 2.97 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcaTTCACTcttgcgggaagaattTACAAActgtgAtctcg 1492172 1493095 R ydcI ydcIp4 Sigma70 1493173 1493178 TTGTTA 20 1493147 1493152 TATCAT 1493141 3.764 good homology 5.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTGTTAataatattttgcaatcaagtTATCATaatcaAacaac 1493312 1494655 F ydcJ ydcJp1 Sigma70 1493187 1493192 ATTATG 15 1493208 1493213 TAATAT 1493218 2.11 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaATTATGttacagcaaaatggaTAATATtgatGttttc 1493312 1494655 F ydcJ ydcJp3 Sigma70 1493137 1493142 TTGTTT 19 1493162 1493167 CAAAAT 1493174 2.62 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaagTTGTTTgattatgataacttgattgCAAAATattattAacaat 1493312 1494655 F ydcJ ydcJp4 Sigma70 1493250 1493255 TTCCCG 20 1493276 1493281 TACACT 1493286 2.834 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattcTTCCCGcaagagtgaatgcggttaccTACACTccagAttact 1493312 1494655 F ydcJ ydcJp5 Sigma70 1493172 1493177 TTAACA 21 1493199 1493204 CAAAAT 1493210 2.893 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTAACAattaaagcaattatgttacagCAAAATggataAtattg 1493312 1494655 F ydcJ ydcJp6 Sigma70 1493219 1493224 TTTTCG 18 1493243 1493248 TAAATT 1493255 2.918 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTTTCGcggcgagatcacagtttgTAAATTcttcccGcaaga 1493312 1494655 F ydcJ ydcJp8 Sigma70 1493179 1493184 TTAAAG 21 1493206 1493211 GATAAT 1493216 3.263 good homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTAAAGcaattatgttacagcaaaatgGATAATattgAtgttt 1493312 1494655 F ydcJ ydcJp9 Sigma70 1493147 1493152 ATGATA 17 1493170 1493175 TATTAA 1493181 3.626 good homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattATGATAacttgattgcaaaatatTATTAAcaattAaagca 1493312 1494655 F ydcJ ydcJp10 Sigma70 1493124 1493129 CTGACA 16 1493146 1493151 TATGAT 1493157 3.743 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgCTGACAagtgaagttgtttgatTATGATaacttGattgc 1493312 1494655 F ydcJ ydcJp11 Sigma70 1493141 1493146 TTGATT 20 1493167 1493172 TATTAT 1493178 4.934 high homology 6.02E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgtTTGATTatgataacttgattgcaaaaTATTATtaacaAttaaa 1494880 1496535 F opgD opgDp1 Sigma70 1494819 1494824 TTGCCG 19 1494844 1494849 GACCAT 1494855 2.19 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttcTTGCCGctgaaaacgaccagcgcggGACCATtcacaAcacca 1494880 1496535 F opgD opgDp2 Sigma70 1494742 1494747 ATGCAT 21 1494769 1494774 GATTAT 1494780 2.633 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttATGCATattctctcagttcaacaattgGATTATtaataAatatt 1494880 1496535 F opgD opgDp3 Sigma70 1494784 1494789 TTGTCT 18 1494808 1494813 TAAGCA 1494820 2.858 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGTCTagagtgagcggtcataaaTAAGCActttctTgccgc 1494880 1496535 F opgD opgDp5 Sigma70 1494723 1494728 ATAAAA 18 1494747 1494752 TATTCT 1494757 3.398 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgacATAAAAaaaatgccgatttatgcaTATTCTctcaGttcaa 1494880 1496535 F opgD opgDp6 Sigma70 1494758 1494763 TTCAAC 18 1494782 1494787 TATTGT 1494793 3.498 good homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcagTTCAACaattggattattaataaaTATTGTctagaGtgagc 1494880 1496535 F opgD opgDp7 Sigma70 1494673 1494678 TTGCAA 15 1494694 1494699 TACAAA 1494706 4.16 high homology 2.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcctTTGCAAaaatttgcctgatttTACAAAcgaatcAggctc 1494880 1496535 F opgD opgDp9 Sigma70 1494766 1494771 TTGGAT 17 1494789 1494794 TAGAGT 1494800 4.876 high homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTGGATtattaataaatattgtcTAGAGTgagcgGtcata 1496675 1496899 F ydcH ydcHp1 Sigma70 1496598 1496603 TTTTTC 15 1496619 1496624 TAATCT 1496629 2.33 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaTTTTTCcctaagttaaatgagTAATCTgatgGtgtgt 1496675 1496899 F ydcH ydcHp2 Sigma70 1496601 1496606 TTCCCT 18 1496625 1496630 GATGGT 1496635 2.358 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTCCCTaagttaaatgagtaatctGATGGTgtgtAtttca 1496675 1496899 F ydcH ydcHp3 Sigma70 1496482 1496487 TTCCCG 21 1496509 1496514 TATGTT 1496519 2.423 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtatTTCCCGccagcgccggataaacgtcagTATGTTgacgAccgcg 1497493 1498473 R ydcK ydcKp1 Sigma70 1498570 1498575 TTTATA 21 1498543 1498548 TATGGA 1498537 2.273 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTTATAaagtatatttgaaatgcatttTATGGAattttCtcgag 1497493 1498473 R ydcK ydcKp3 Sigma70 1498590 1498595 TTCTTA 16 1498568 1498573 TATAAA 1498563 2.563 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatcTTCTTActcattttgtttaattTATAAAgtatAtttga 1497493 1498473 R ydcK ydcKp4 Sigma70 1498587 1498592 TTACTC 20 1498561 1498566 TATATT 1498556 2.584 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttcTTACTCattttgtttaatttataaagTATATTtgaaAtgcat 1497493 1498473 R ydcK ydcKp5 Sigma70 1498597 1498602 CTGCAT 18 1498573 1498578 TAATTT 1498567 2.918 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctCTGCATcttcttactcattttgttTAATTTataaaGtatat 1497493 1498473 R ydcK ydcKp6 Sigma70 1498590 1498595 TTCTTA 18 1498566 1498571 TAAAGT 1498559 3.498 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatcTTCTTActcattttgtttaatttaTAAAGTatatttGaaatg 1500481 1501149 F ydcL ydcLp1 Sigma70 1500357 1500362 TTGACT 20 1500383 1500388 GAAAAA 1500393 2.814 poor homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTGACTatgtcgtctgaaaaggggctGAAAAAtttaTtttca 1500481 1501149 F ydcL ydcLp2 Sigma70 1500305 1500310 TTAACT 18 1500329 1500334 GATGAT 1500341 3.278 good homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagcTTAACTtactgaaatttaagtactGATGATtgacttAgcccc 1500481 1501149 F ydcL ydcLp3 Sigma70 1500370 1500375 CTGAAA 15 1500391 1500396 TATTTT 1500402 3.47 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgtCTGAAAaggggctgaaaaattTATTTTcaccaAcactt 1500481 1501149 F ydcL ydcLp4 Sigma70 1500334 1500339 TTGACT 19 1500359 1500364 GACTAT 1500369 3.54 good homology 4.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgaTTGACTtagcccctttttcggcattGACTATgtcgTctgaa 1500481 1501149 F ydcL ydcLp5 Sigma70 1500436 1500441 TTGCTA 17 1500459 1500464 TAATCA 1500470 4.286 high homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGCTAtaacttagaaagtaataTAATCAtctcaGgaaac 1500481 1501149 F ydcL ydcLp6 Sigma70 1500436 1500441 TTGCTA 15 1500457 1500462 TATAAT 1500469 5.89 high homology 1.44E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGCTAtaacttagaaagtaaTATAATcatctcAggaaa 1501741 1502889 F insQ insQp1 Sigma70 1501646 1501651 TTTCTT 16 1501668 1501673 TATCAT 1501678 3.453 good homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcggTTTCTTttttcacagaccaaagTATCATttgaCctgtg 1501741 1502889 F insQ insQp3 Sigma70 1501674 1501679 TTGACC 21 1501701 1501706 TAAATT 1501713 4.263 high homology 3.99E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcatTTGACCtgtgaaacgattacaggcattTAAATTccagttAagacc 1504196 1504732 F ydcN ydcNp1 Sigma70 1504047 1504052 TTAATA 19 1504072 1504077 TAGCGT 1504083 2.3 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccaaTTAATAccgccagaaaccccgccagTAGCGTgggtgGaggaa 1504196 1504732 F ydcN ydcNp5 Sigma70 1504144 1504149 TTGTCC 18 1504168 1504173 TAAACT 1504178 4.338 high homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agcatTTGTCCgttataacgcacaagTGaTAAACTtccgTtttgc 1504805 1506766 F ydcP ydcPp2 Sigma70 1504746 1504751 TTCGCA 16 1504768 1504773 TAAAAT 1504778 3.993 good homology 4.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actatTTCGCAacgtcgcgcttgtggcTAAAATagccGccatt 1504805 1506766 F ydcP ydcPp3 Sigma70 1504647 1504652 TTGCTG 17 1504670 1504675 TATCGT 1504680 4.346 high homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgatTTGCTGcagacgtcacgcatatcTATCGTaatgGtgggg 1506858 1507088 R yncJ yncJp1 Sigma70 1507165 1507170 TTGCGC 20 1507139 1507144 TAACCT 1507133 2.184 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttctTTGCGCtaatttgcaaaactgaataaTAACCTcaagaAacgat 1506858 1507088 R yncJ yncJp2 Sigma70 1507309 1507314 TTCACA 16 1507287 1507292 GAGTAT 1507282 2.343 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtTTCACAtcgcctccctgccgctGAGTATatcaAcaaag 1506858 1507088 R yncJ yncJp3 Sigma70 1507204 1507209 ATGCAA 15 1507183 1507188 GAAGAT 1507177 2.42 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaATGCAAtgcaaaatcaggaagGAAGATtccagAatttc 1506858 1507088 R yncJ yncJp6 Sigma70 1507258 1507263 TTACCT 17 1507235 1507240 GAAAAT 1507228 4.126 high homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgtTTACCTccgtgtgtaatttgctcGAAAATagcactAaatcg 1509678 1510823 F ydcS ydcSp1 Sigma70 1509539 1509544 ATAATG 21 1509566 1509571 TAAATT 1509577 1.643 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggcATAATGcgcggtagctcacaacctgaaTAAATTttctcAggggc 1509678 1510823 F ydcS ydcSp2 Sigma70 1509492 1509497 TTTCCT 20 1509518 1509523 GAAGAT 1509530 2.084 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTTCCTaactccttgactatactccaGAAGATaaccttAcagac 1509678 1510823 F ydcS ydcSp3 Sigma70 1509444 1509449 TTTAAT 21 1509471 1509476 GAATTT 1509482 2.283 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTTAATtcctcttagattgggtaatatGAATTTcgaatAgcagt 1509678 1510823 F ydcS ydcSp4 Sigma70 1509593 1509598 CTGCAA 15 1509614 1509619 TAAACA 1509625 2.65 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgcCTGCAAgccgccgtctatggtTAAACAaggagAtattt 1509678 1510823 F ydcS ydcSp6 Sigma70 1509444 1509449 TTTAAT 18 1509468 1509473 TATGAA 1509479 3.308 good homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTTAATtcctcttagattgggtaaTATGAAtttcgAatagc 1509678 1510823 F ydcS ydcSp7 Sigma70 1509504 1509509 TTGACT 19 1509529 1509534 TACAGA 1509539 3.38 good homology 4.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actccTTGACTatactccagaagataacctTACAGAcggcAtaatg 1509678 1510823 F ydcS ydcSp9 Sigma70 1509444 1509449 TTTAAT 15 1509465 1509470 TAATAT 1509477 4.43 high homology 4.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTTAATtcctcttagattgggTAATATgaatttCgaata 1513602 1515026 F prr prrp1 Sigma70 1513413 1513418 TTTACG 19 1513438 1513443 TACCGT 1513448 2.15 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaccTTTACGgcaggtcatgaacgaacgtTACCGTtgtgGttgct 1515123 1515218 R yncL yncLp1 Sigma70 1515275 1515280 ATTATT 18 1515251 1515256 TACTAT 1515246 2.548 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgagtATTATTgcggattttcttaacccgTACTATacacAtaggg 1515123 1515218 R yncL yncLp3 Sigma70 1515271 1515276 TTGCGG 17 1515248 1515253 TATACA 1515242 3.626 good homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTGCGGattttcttaacccgtacTATACAcatagGggcaa 1515123 1515218 R yncL yncLp4 Sigma70 1515302 1515307 TTGCCC 20 1515276 1515281 TATTAT 1515270 4.144 high homology 2.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaacTTGCCCttatccatcttcagaatgagTATTATtgcggAttttc 1515413 1515586 F ydcX ydcXp2 Sigma70 1515237 1515242 TTGCCC 19 1515262 1515267 TAAGAA 1515273 2.47 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTGCCCctatgtgtatagtacgggtTAAGAAaatccGcaata 1515413 1515586 F ydcX ydcXp3 Sigma70 1515309 1515314 TTGCTG 16 1515331 1515336 CAAACT 1515342 2.503 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaagTTGCTGtttgatgattttttctCAAACTggtgaAaaaac 1515413 1515586 F ydcX ydcXp4 Sigma70 1515316 1515321 TTGATG 18 1515340 1515345 GAAAAA 1515351 2.748 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgtTTGATGattttttctcaaactggtGAAAAAacttgAtgcac 1515413 1515586 F ydcX ydcXp5 Sigma70 1515205 1515210 CTGGAA 21 1515232 1515237 TATCAT 1515244 2.863 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctaCTGGAAacattcatttttgccacctttTATCATtgccccTatgtg 1515413 1515586 F ydcX ydcXp6 Sigma70 1515348 1515353 TTGATG 17 1515371 1515376 CATATT 1515382 3.496 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacTTGATGcacgtcaaaaaatgacgCATATTtgcgcGcgttt 1515413 1515586 F ydcX ydcXp7 Sigma70 1515229 1515234 TTTTAT 15 1515250 1515255 TATAGT 1515260 3.85 good homology 7.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaccTTTTATcattgcccctatgtgTATAGTacggGttaag 1515672 1515905 F ydcY ydcYp1 Sigma70 1515620 1515625 CTTATA 17 1515643 1515648 TAAATT 1515654 3.256 good homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaCTTATAtcatttggatgaatcgaTAAATTtcacaAgtggc 1515672 1515905 F ydcY ydcYp3 Sigma70 1515602 1515607 TTGACG 16 1515624 1515629 TATCAT 1515634 4.413 high homology 2.62E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggcTTGACGgcaccacgcagacttaTATCATttggAtgaat 1517051 1518088 F yncB yncBp1 Sigma70 1516882 1516887 ATAAAA 21 1516909 1516914 TACTAT 1516920 2.593 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctcaATAAAAtaatgatgatgatgttatcaaTACTATcgaaaAcagcc 1518286 1518951 F mcbR mcbRp1 Sigma70 1518181 1518186 ATAACA 16 1518203 1518208 TATGAT 1518214 2.853 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaATAACAacaaaggtgagtggttTATGATtattcActtta 1518286 1518951 F mcbR mcbRp2 Sigma70 1518091 1518096 TTTCAA 18 1518115 1518120 TAAAAA 1518126 3.738 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaagTTTCAAcggcggcgtaagccgccaTAAAAAtccagGcaaaa 1518987 1521089 R yncD yncDp1 Sigma70 1521189 1521194 CTACAA 19 1521164 1521169 TATTGT 1521159 2.08 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgaCTACAAttttctcaattacttaacgTATTGTgccgTttcat 1518987 1521089 R yncD yncDp2 Sigma70 1521130 1521135 TTCATT 18 1521106 1521111 CATTCT 1521099 2.288 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaatTTCATTaccatgacggcgttttccCATTCTtaacctGgcttt 1518987 1521089 R yncD yncDp3 Sigma70 1521284 1521289 ATGCTT 19 1521259 1521264 TACGCT 1521252 2.33 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaATGCTTcgctaagcgtaatcatcgtTACGCTcttgttAtaaat 1518987 1521089 R yncD yncDp4 Sigma70 1521331 1521336 ATGCAT 21 1521304 1521309 GATATT 1521297 2.403 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtaaATGCATgacgactccctttgatgaaccGATATTtttgctGcttca 1518987 1521089 R yncD yncDp5 Sigma70 1521162 1521167 TTGTGC 20 1521136 1521141 TACAAT 1521129 2.504 poor homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtaTTGTGCcgtttcattttccataaattTACAATttcattAccatg 1518987 1521089 R yncD yncDp7 Sigma70 1521126 1521131 TTACCA 20 1521100 1521105 TAACCT 1521094 2.964 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTACCAtgacggcgttttcccattctTAACCTggcttTtttca 1518987 1521089 R yncD yncDp9 Sigma70 1521148 1521153 TTTCCA 17 1521125 1521130 TACCAT 1521120 4.226 high homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTTCCAtaaatttacaatttcatTACCATgacgGcgttt 1524964 1525176 F yncH yncHp1 Sigma70 1524885 1524890 TTGAGT 20 1524911 1524916 TATTTA 1524923 2.014 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attatTTGAGTgggataccagaagattaTGtTATTTAttattcAgtaac 1524964 1525176 F yncH yncHp2 Sigma70 1524824 1524829 TTGCTG 19 1524849 1524854 GAAATT 1524860 2.6 poor homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgaTTGCTGatgctgtatgtcagttaccGAAATTacaagAagtat 1524964 1525176 F yncH yncHp3 Sigma70 1524894 1524899 ATACCA 15 1524915 1524920 TATTAT 1524926 2.99 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgggATACCAgaagattatgttattTATTATtcagtAacttt 1524964 1525176 F yncH yncHp4 Sigma70 1524885 1524890 TTGAGT 15 1524906 1524911 TATGTT 1524916 3.62 good homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTGAGTgggataccagaagatTATGTTatttAttatt 1529840 1530976 F ydcC ydcCp1 Sigma70 1529773 1529778 TTACCT 19 1529798 1529803 TACACA 1529809 2.33 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTACCTaaagctgttttttattgctTACACAtgatcAaatac 1529840 1530976 F ydcC ydcCp2 Sigma70 1529793 1529798 TTGCTT 20 1529819 1529824 TACATA 1529830 2.364 poor homology 0.00016826 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTGCTTacacatgatcaaatactcctTACATAattaaGgagaa 1529840 1530976 F ydcC ydcCp3 Sigma70 1529724 1529729 TTGTAC 16 1529746 1529751 TATGTT 1529757 2.923 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTGTACtaaacaattcgcatttTATGTTtaaaaAttgag 1531076 1531309 F pptA pptAp1 Sigma70 1530838 1530843 TTCAGG 21 1530865 1530870 TATTTT 1530876 1.993 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTCAGGgatacggcacattgctattaaTATTTTgacgaAtgata 1531076 1531309 F pptA pptAp2 Sigma70 1530970 1530975 TTCGTA 16 1530992 1530997 TATTGT 1531003 2.943 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggctTTCGTAatcttgccctgggcatTATTGTcgtatAaacgc 1531076 1531309 F pptA pptAp3 Sigma70 1530861 1530866 TTAATA 18 1530885 1530890 TATTCA 1530896 3.148 good homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaTTAATAttttgacgaatgataaggTATTCAaggcaGggtta 1531076 1531309 F pptA pptAp4 Sigma70 1530836 1530841 TTTTCA 20 1530862 1530867 TAATAT 1530872 3.184 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTTTCAgggatacggcacattgctatTAATATtttgAcgaat 1531076 1531309 F pptA pptAp5 Sigma70 1530979 1530984 TTGCCC 15 1531000 1531005 TATAAA 1531012 3.8 good homology 0.00012465 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatcTTGCCCtgggcattattgtcgTATAAAcgctttAccgga 1531076 1531309 F pptA pptAp6 Sigma70 1530855 1530860 TTGCTA 19 1530880 1530885 TAAGGT 1530891 4 good homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcacaTTGCTAttaatattttgacgaaTGaTAAGGTattcaAggcag 1531306 1531875 R yddH yddHp1 Sigma70 1531925 1531930 TTACTT 20 1531899 1531904 TAAAAA 1531893 2.414 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcgTTACTTattgcgttacggactacgctTAAAAAaacctTcttcg 1531306 1531875 R yddH yddHp2 Sigma70 1532006 1532011 CTGGAA 16 1531984 1531989 TATTTT 1531978 2.543 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacCTGGAAtagacgccgcaccggcTATTTTgtgcgAtcgcg 1531306 1531875 R yddH yddHp3 Sigma70 1531929 1531934 TTCGTT 18 1531905 1531910 TACGCT 1531899 2.578 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatTTCGTTacttattgcgttacggacTACGCTtaaaaAaacct 1531306 1531875 R yddH yddHp4 Sigma70 1531954 1531959 TTCGCA 15 1531933 1531938 TAATTT 1531928 2.81 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgTTCGCAaatcgccaatcccgtTAATTTcgttActtat 1531306 1531875 R yddH yddHp5 Sigma70 1532035 1532040 TTCCCT 17 1532012 1532017 TATAAC 1532006 2.856 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTCCCTtagtggttttctcaactTATAACctggaAtagac 1531306 1531875 R yddH yddHp7 Sigma70 1532035 1532040 TTCCCT 19 1532010 1532015 TAACCT 1532004 2.94 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTCCCTtagtggttttctcaacttaTAACCTggaatAgacgc 1531306 1531875 R yddH yddHp8 Sigma70 1532080 1532085 TTAATA 17 1532057 1532062 CAGAAT 1532052 3.016 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accagTTAATAcgggcaaaatagtgattCAGAATgggcGtcatc 1532989 1533882 R yddE yddEp1 Sigma70 1533933 1533938 TTCGCT 21 1533906 1533911 GATAGT 1533900 2.323 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcccTTCGCTctccggccacttgcaggctatGATAGTtctccAgtcac 1532989 1533882 R yddE yddEp3 Sigma70 1533981 1533986 ATCAAA 15 1533960 1533965 GATAAT 1533955 2.63 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgatATCAAAttgtgcgttcgcggcGATAATttcaCcctgg 1532989 1533882 R yddE yddEp4 Sigma70 1533981 1533986 ATCAAA 17 1533958 1533963 TAATTT 1533951 3.046 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgatATCAAAttgtgcgttcgcggcgaTAATTTcaccctGgccgg 1532989 1533882 R yddE yddEp6 Sigma70 1533933 1533938 TTCGCT 18 1533909 1533914 TATGAT 1533903 3.648 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcccTTCGCTctccggccacttgcaggcTATGATagttcTccagt 1533961 1534641 R narV narVp1 Sigma70 1534877 1534882 TTGATG 18 1534853 1534858 GAAGCT 1534846 3.118 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgtTTGATGctctgctgcaactggcggGAAGCTccctttCaagtg 1533961 1534641 R narV narVp2 Sigma70 1534844 1534849 TTTCAA 21 1534817 1534822 TAAACA 1534811 3.173 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcccTTTCAAgtgacagtgtcacaaaacaagTAAACAgcgaaGagcgc 1542408 1542743 R yddJ yddJp2 Sigma70 1542937 1542942 CTGCTA 16 1542915 1542920 TATAAA 1542909 2.663 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaacgCTGCTAacaaccagttgaaataTATAAAtcttgAtttcc 1542408 1542743 R yddJ yddJp3 Sigma70 1542817 1542822 TTGGAA 15 1542796 1542801 TAAAAC 1542790 2.73 poor homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTGGAActttattccccataaTAAAACagagcAaaact 1542408 1542743 R yddJ yddJp4 Sigma70 1542806 1542811 TTCCCC 21 1542779 1542784 TAAATT 1542773 2.783 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTCCCCataataaaacagagcaaaactTAAATTttttaAatgtt 1542408 1542743 R yddJ yddJp5 Sigma70 1542881 1542886 ATCAAA 20 1542855 1542860 TAAAAT 1542849 3.074 poor homology 8.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctATCAAAagtttaagactggacaataaTAAAATaacccAcattg 1542408 1542743 R yddJ yddJp6 Sigma70 1542907 1542912 TTGATT 19 1542882 1542887 TATCAA 1542875 3.3 good homology 7.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTGATTtcctgacttatcttccatcTATCAAaagtttAagact 1550422 1550706 R yddM yddMp1 Sigma70 1550799 1550804 CTCCAA 20 1550773 1550778 TATTGT 1550767 1.744 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acactCTCCAAcatgaaatggctaaatggatTATTGTtgcgtAggaag 1550422 1550706 R yddM yddMp2 Sigma70 1550768 1550773 TTGCGT 16 1550746 1550751 GATAGT 1550739 2.993 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgTTGCGTaggaaggaacaataatGATAGTgttcccAgtgaa 1550422 1550706 R yddM yddMp3 Sigma70 1550768 1550773 TTGCGT 18 1550744 1550749 TAGTGT 1550738 3.138 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tattgTTGCGTaggaaggaacaataaTGaTAGTGTtcccaGtgaag 1550852 1551862 R adhP adhPp1 Sigma70 1551957 1551962 TTCCCT 21 1551930 1551935 CATACT 1551924 2.413 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTCCCTctccctttttcagatctcatcCATACTgggtaGtggcg 1550852 1551862 R adhP adhPp2 Sigma70 1551901 1551906 TTGCCT 16 1551879 1551884 CATCAT 1551873 2.713 poor homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcatTTGCCTcacctgctatgcagaaCATCATccgaaAaggag 1551996 1553693 R maeA maeAp1 Sigma70 1553933 1553938 TTTCTA 20 1553907 1553912 GAAGGT 1553901 1.514 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTTCTAaccagcgcaaaatagttaccGAAGGTgacaaAtccag 1551996 1553693 R maeA maeAp2 Sigma70 1553844 1553849 TTCATA 16 1553822 1553827 GACGAT 1553816 2.133 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtaaTTCATAaccatcagtcctcaatGACGATtaaacAccatt 1551996 1553693 R maeA maeAp3 Sigma70 1553796 1553801 ATGGTG 19 1553771 1553776 TATACT 1553766 2.77 poor homology 9.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcaATGGTGtttttgtttttatctgcttTATACTtgagGccgac 1555136 1556062 R ddpF ddpFp2 Sigma70 1556190 1556195 TTGCCT 18 1556166 1556171 GATCGT 1556161 3.298 good homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccatTTGCCTgacggctgcgcttttcgcGATCGTtgctAtgcgg 1555136 1556062 R ddpF ddpFp3 Sigma70 1556276 1556281 TTGGTT 17 1556253 1556258 GAACAT 1556247 3.476 good homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taccaTTGGTTtgctgcaatgcgcaccaGAACATggagtAccacg 1561358 1563757 R dosP dosPp2 Sigma70 1563944 1563949 CTGAAA 15 1563923 1563928 GATATT 1563917 2.81 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaaaCTGAAAgccgcaaacggcgaaGATATTgccctCtcact 1565528 1566847 R yddW yddWp2 Sigma70 1567029 1567034 CTGCAC 21 1567002 1567007 TATATT 1566996 2.683 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttcCTGCACccgcgtgcacgttcaccacacTATATTgtgatGaatga 1565528 1566847 R yddW yddWp3 Sigma70 1566966 1566971 CTGAAT 19 1566941 1566946 GATAAT 1566935 3.17 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgtCTGAATggttataagacaagggagcGATAATtcatcGctccc 1565528 1566847 R yddW yddWp6 Sigma70 1566903 1566908 TTGACT 16 1566881 1566886 GAGAAT 1566876 3.893 good homology 3.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtaTTGACTtaacggggataagtacGAGAATgagcGcacat 1566978 1568513 R gadC gadCp2 Sigma70 1568592 1568597 TTAGCA 20 1568566 1568571 TACGCT 1568560 2.374 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTAGCAacggaaaatattgttctgaaTACGCTtcagaAcaaaa 1566978 1568513 R gadC gadCp7 Sigma70 1568732 1568737 CTGAAA 17 1568709 1568714 GAAACT 1568703 3.936 good homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctccCTGAAAtatctcagcgatcacccGAAACTgcaggGtattg 1566978 1568513 R gadC gadCp8 Sigma70 1568602 1568607 TTCACT 18 1568578 1568583 TATTGT 1568572 4.128 high homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctgTTCACTggcattagcaacggaaaaTATTGTtctgaAtacgc 1570431 1573226 R pqqL pqqLp1 Sigma70 1573262 1573267 TTCGGA 15 1573241 1573246 TAAATT 1573235 2.4 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatagTTCGGAttttacttaaccgggTAAATTcgcccGgtttt 1573271 1575643 R yddB yddBp1 Sigma70 1575700 1575705 TTGTGA 16 1575678 1575683 TAAAAA 1575672 2.713 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTGTGAcattagcgcggttttaTAAAAAcaataAaagcc 1573271 1575643 R yddB yddBp4 Sigma70 1575707 1575712 ATGATA 21 1575680 1575685 TATAAA 1575675 3.203 good homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggccgATGATAtttgtgacattagcgcggtttTATAAAaacaAtaaaa 1573271 1575643 R yddB yddBp5 Sigma70 1575864 1575869 TTAATT 17 1575841 1575846 GATATT 1575835 3.696 good homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgaTTAATTttacgacgtccgaaatgGATATTtcttgAcgaaa 1577657 1578814 R ydeM ydeMp1 Sigma70 1579000 1579005 TTGCCG 19 1578975 1578980 TAAAGA 1578969 2.89 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaccTTGCCGccgccaatccgcaggtcgtTAAAGAgatgcAaggcg 1577657 1578814 R ydeM ydeMp3 Sigma70 1579028 1579033 CTGACG 17 1579005 1579010 TAACCT 1579000 3.266 good homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaaaCTGACGgatctacagcaaaaagaTAACCTtgccGccgcc 1578866 1580548 R ydeN ydeNp1 Sigma70 1580581 1580586 TTACTT 15 1580560 1580565 TAAGAA 1580554 2.09 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTACTTtggaattaagtacaaTAAGAAgaggaAcattt 1578866 1580548 R ydeN ydeNp2 Sigma70 1580706 1580711 ATTACT 15 1580685 1580690 TAATGT 1580680 2.34 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagaaATTACTtaatagaacagaaagTAATGTcaacGcttta 1578866 1580548 R ydeN ydeNp3 Sigma70 1580785 1580790 ATGATC 20 1580759 1580764 TAAAAT 1580753 3.034 poor homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttATGATCtcaattctgcattttgtcagTAAAATgcaatAattta 1578866 1580548 R ydeN ydeNp4 Sigma70 1580590 1580595 TTCGTA 19 1580565 1580570 TACAAT 1580559 3.34 good homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcTTCGTAaaattactttggaattaagTACAATaagaaGaggaa 1578866 1580548 R ydeN ydeNp5 Sigma70 1580766 1580771 TTGTCA 16 1580744 1580749 TATTAA 1580738 3.423 good homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTGTCAgtaaaatgcaataattTATTAAatatcAataaa 1578866 1580548 R ydeN ydeNp6 Sigma70 1580755 1580760 ATGCAA 18 1580731 1580736 TAAATT 1580726 3.898 good homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaATGCAAtaatttattaaatatcaaTAAATTagttGtttat 1578866 1580548 R ydeN ydeNp7 Sigma70 1580609 1580614 TTACAT 17 1580586 1580591 TAAAAT 1580579 5.436 high homology 2.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcacTTACATccacttatttctcttcgTAAAATtactttGgaatt 1585817 1586320 R ydeR ydeRp2 Sigma70 1586450 1586455 ATCCCA 20 1586424 1586429 TATTTT 1586418 1.634 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtggATCCCActggtaccagaacagaacaaTATTTTgccttActccg 1585817 1586320 R ydeR ydeRp4 Sigma70 1586507 1586512 TTGGAC 17 1586484 1586489 GAAACT 1586478 3.926 good homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGGACgcaaatatgcgtccggtGAAACTgaatgAtcttc 1588878 1590200 R hipA hipAp1 Sigma70 1590238 1590243 ATGCCT 20 1590212 1590217 CAAAAT 1590206 1.714 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaATGCCTcgccagaatcaacagaacagCAAAATctggaGtggta 1588878 1590200 R hipA hipAp5 Sigma70 1590282 1590287 TTTACA 18 1590258 1590263 GACGCT 1590252 2.728 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagatTTTACAgtcgcttgaactctcaatGACGCTatgcgAcgcga 1588878 1590200 R hipA hipAp8 Sigma70 1590337 1590342 TTTCCA 17 1590314 1590319 GACAAT 1590308 4.066 high homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgaTTTCCAatttcgaaaacaaccctGACAATaccacGctcac 1596641 1598233 R lsrK lsrKp1 Sigma70 1598291 1598296 TTACCG 16 1598269 1598274 TATAGA 1598263 2.133 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTACCGggaatgatggagaacgTATAGAggaacAgacag 1596641 1598233 R lsrK lsrKp2 Sigma70 1598386 1598391 TTGCCG 19 1598361 1598366 TATCAA 1598354 2.67 poor homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaTTGCCGctgcaatgaaaggcggttaTATCAAcgcactGgttac 1606132 1607046 R yneE yneEp1 Sigma70 1607125 1607130 TTGTAG 21 1607098 1607103 GAGAAT 1607091 2.583 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagcTTGTAGgtaatttgtaagtagcgtcttGAGAATgtgatcGtaatc 1606132 1607046 R yneE yneEp2 Sigma70 1607133 1607138 TTGTAA 20 1607107 1607112 TAGCGT 1607101 2.594 poor homology 0.000166586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatgTTGTAAgcttgtaggtaatttgtaagTAGCGTcttgaGaatgt 1606132 1607046 R yneE yneEp3 Sigma70 1607151 1607156 ATGCAG 15 1607130 1607135 TAAGCT 1607124 2.68 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccacATGCAGcgcctgctaatgttgTAAGCTtgtagGtaatt 1606132 1607046 R yneE yneEp4 Sigma70 1607114 1607119 TTGTAA 18 1607090 1607095 GATCGT 1607085 3.008 poor homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtaatTTGTAAgtagcgtcttgagaaTGtGATCGTaatcAcgttt 1606132 1607046 R yneE yneEp6 Sigma70 1607165 1607170 TTAACA 21 1607138 1607143 TAATGT 1607132 3.753 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatcaTTAACAggtgccacatgcagcgccTGcTAATGTtgtaaGcttgt 1606132 1607046 R yneE yneEp7 Sigma70 1607191 1607196 TTACAA 15 1607170 1607175 TATCAT 1607164 4.03 high homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attagTTACAAcatcctatatgccttTATCATtaacaGgtgcc 1608931 1609878 R yneF yneFp1 Sigma70 1609945 1609950 TTTATT 16 1609923 1609928 GAACAT 1609918 2.233 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaccTTTATTtgccgccgctgtcagcGAACATgctaTcttgg 1608931 1609878 R yneF yneFp2 Sigma70 1610007 1610012 TTGTAC 15 1609986 1609991 GAGAAT 1609980 2.56 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctggTTGTACagatgaatcagccatGAGAATtgcggAaaacg 1608931 1609878 R yneF yneFp3 Sigma70 1609919 1609924 ATGCTA 21 1609892 1609897 TAGTCT 1609886 2.623 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgaacATGCTAtcttggttcggtcagtatTGaTAGTCTggattTctggc 1608931 1609878 R yneF yneFp4 Sigma70 1609940 1609945 TTGCCG 19 1609915 1609920 TATCTT 1609909 3.27 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tttatTTGCCGccgctgtcagcgaacaTGcTATCTTggttcGgtcag 1611339 1612727 R sad sadp1 Sigma70 1612943 1612948 TTTCCA 19 1612918 1612923 GAGATT 1612912 1.94 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTTCCAgctggcgcagacgggtagtGAGATTcgacgGcacgc 1611339 1612727 R sad sadp3 Sigma70 1612818 1612823 TTCTCG 21 1612791 1612796 TATTAT 1612784 2.893 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcaTTCTCGattcgtgaataagtggcttaaTATTATtcatttTaaagc 1611339 1612727 R sad sadp4 Sigma70 1612781 1612786 TTTAAA 17 1612758 1612763 TATCTT 1612751 4.466 high homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTTAAAgcaagagtaaatctgcgTATCTTcataccAtgact 1612828 1613709 F yneJ yneJp1 Sigma70 1612750 1612755 ATGGTA 16 1612772 1612777 TACTCT 1612784 2.383 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtcATGGTAtgaagatacgcagattTACTCTtgctttAaaatg 1612828 1613709 F yneJ yneJp2 Sigma70 1612781 1612786 TTTAAA 20 1612807 1612812 TATTCA 1612819 2.844 poor homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttgcTTTAAAatgaataatattaagccactTATTCAcgaatcGagaat 1612828 1613709 F yneJ yneJp4 Sigma70 1612770 1612775 TTTACT 19 1612795 1612800 TATTAA 1612805 3.02 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaTTTACTcttgctttaaaatgaataaTATTAAgccaCttatt 1612828 1613709 F yneJ yneJp5 Sigma70 1612770 1612775 TTTACT 16 1612792 1612797 TAATAT 1612804 4.173 high homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagaTTTACTcttgctttaaaatgaaTAATATtaagccActtat 1613787 1614902 F yneK yneKp1 Sigma70 1613724 1613729 TTCTTG 16 1613746 1613751 TATAGT 1613756 2.633 poor homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatagTTCTTGcggttaatatgctctaTATAGTgatgTtccga 1613787 1614902 F yneK yneKp4 Sigma70 1613716 1613721 TTTGAT 15 1613737 1613742 TATGCT 1613747 3.49 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctattTTTGATagttcttgcggttaaTATGCTctatAtagtg 1613787 1614902 F yneK yneKp5 Sigma70 1613717 1613722 TTGATA 21 1613744 1613749 TATATA 1613755 3.863 good homology 4.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTGATAgttcttgcggttaatatgctcTATATAgtgatGttccg 1619356 1620543 F ydeE ydeEp1 Sigma70 1619292 1619297 TTGCCA 19 1619317 1619322 TAAAAC 1619328 2.89 poor homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGCCAtgctatttctttacatctcTAAAACaaaacAtaacg 1619356 1620543 F ydeE ydeEp3 Sigma70 1619186 1619191 TTGTAA 20 1619212 1619217 TACTTT 1619223 3.134 poor homology 0.000103081 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcttTTGTAAgcaatcaacttagctgaattTACTTTtctttAacagt 1619356 1620543 F ydeE ydeEp4 Sigma70 1619257 1619262 ATTAAT 15 1619278 1619283 TATACT 1619288 3.62 good homology 5.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggcATTAATgcgcaaataagtcgcTATACTtcggAttttt 1622129 1622521 R ydeI ydeIp3 Sigma70 1622615 1622620 TTTAAA 17 1622592 1622597 CAATAT 1622587 3.506 good homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctgatTTTAAAtgccttataacaatTGgCAATATtcttAtttgg 1622129 1622521 R ydeI ydeIp4 Sigma70 1622723 1622728 TTTTCA 16 1622701 1622706 TATTCT 1622696 3.593 good homology 0.000100034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTTTCAaacatataaatccgatTATTCTgaaaAtatgt 1622129 1622521 R ydeI ydeIp5 Sigma70 1622615 1622620 TTTAAA 20 1622589 1622594 TATTCT 1622583 4.234 high homology 1.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTTAAAtgccttataacaattggcaaTATTCTtatttGgcaat 1622129 1622521 R ydeI ydeIp6 Sigma70 1622596 1622601 TTGGCA 18 1622572 1622577 TATAAA 1622567 4.468 high homology 4.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTGGCAatattcttatttggcaatTATAAAaataGcaacc 1623359 1625404 R dcp dcpp2 Sigma70 1625528 1625533 TTCCTC 18 1625504 1625509 TAACAT 1625498 2.658 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgTTCCTCaacgcttttgtgtgtcaaTAACATagcacGggatg 1623359 1625404 R dcp dcpp4 Sigma70 1625457 1625462 TTGCAC 17 1625434 1625439 TACGCT 1625428 4.446 high homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caagaTTGCACtccgttatcagtaagccTACGCTatggaAcacct 1627239 1627442 F ydfZ ydfZp1 Sigma70 1627067 1627072 TTTCCT 19 1627092 1627097 GAGTCT 1627103 1.77 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attcaTTTCCTctcatcccatccggggTGaGAGTCTtttccCccgcc 1627239 1627442 F ydfZ ydfZp2 Sigma70 1627163 1627168 ATTTCA 15 1627184 1627189 TATATT 1627196 2.28 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatATTTCActcgacaggagtattTATATTgcgcccGttacg 1627239 1627442 F ydfZ ydfZp3 Sigma70 1627067 1627072 TTTCCT 17 1627090 1627095 GAGAGT 1627101 3.036 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTTCCTctcatcccatccggggtGAGAGTcttttCccccg 1627477 1628937 R ydfI ydfIp1 Sigma70 1628982 1628987 TTCATA 20 1628956 1628961 CATATT 1628951 1.744 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttttaTTCATAtaacaaaacatatagctTGcCATATTtataTttaag 1627477 1628937 R ydfI ydfIp2 Sigma70 1628986 1628991 TTTATT 16 1628964 1628969 TAGCTT 1628958 2.033 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggattTTTATTcatataacaaaacataTAGCTTgccatAtttat 1627477 1628937 R ydfI ydfIp3 Sigma70 1629096 1629101 TTTAAG 19 1629071 1629076 GAAGAT 1629065 2.16 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgaTTTAAGtgcgctggaagacgctgcgGAAGATcaaccGcgtgt 1627477 1628937 R ydfI ydfIp4 Sigma70 1628977 1628982 ATAACA 21 1628950 1628955 TATATT 1628944 2.913 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatATAACAaaacatatagcttgccatattTATATTtaaggAattgt 1627477 1628937 R ydfI ydfIp5 Sigma70 1629158 1629163 ATGGCA 16 1629136 1629141 TAATCT 1629131 2.963 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatcATGGCAtattcagtgattggttTAATCTctgcGctgaa 1631063 1631329 F ydfK ydfKp1 Sigma70 1630953 1630958 TTCAGC 19 1630978 1630983 TAAAAT 1630989 2.8 poor homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTCAGCatttttagtcatgccctaaTAAAATtagggAttggc 1631063 1631329 F ydfK ydfKp2 Sigma70 1630870 1630875 TTGTCA 21 1630897 1630902 TACTAA 1630908 2.803 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTGTCAactatatcatatataacacatTACTAAttcgaGgctat 1631646 1632236 F pinQ pinQp2 Sigma70 1631545 1631550 TTTATT 20 1631571 1631576 TATGCA 1631582 2.074 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgTTTATTttcgaacgtgtacatacaaaTATGCAcaaaaAtaatc 1631646 1632236 F pinQ pinQp3 Sigma70 1631572 1631577 ATGCAC 15 1631593 1631598 TATTTT 1631604 2.48 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatATGCACaaaaataatcataatTATTTTctgagAtgcat 1631646 1632236 F pinQ pinQp4 Sigma70 1631585 1631590 ATCATA 19 1631610 1631615 TATGAT 1631620 2.49 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataATCATAattattttctgagatgcatTATGATatgaAcacca 1631646 1632236 F pinQ pinQp7 Sigma70 1631611 1631616 ATGATA 17 1631634 1631639 TAGAGT 1631646 4.086 high homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattATGATAtgaacaccaatttcgtaTAGAGTctcactAtgtct 1632334 1632909 R tfaQ tfaQp1 Sigma70 1633064 1633069 CTGCAA 19 1633039 1633044 TACTGT 1633034 2.54 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgCTGCAAgcgcaggcgcgcatgcacaTACTGTcggtAttggt 1632334 1632909 R tfaQ tfaQp2 Sigma70 1633064 1633069 CTGCAA 17 1633041 1633046 CATACT 1633036 3.196 good homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgCTGCAAgcgcaggcgcgcatgcaCATACTgtcgGtattg 1634780 1635013 F ynfO ynfOp2 Sigma70 1634706 1634711 TTGATC 15 1634727 1634732 TAAAAA 1634739 3.58 good homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTGATCtgcatcaacttaacgTAAAAAcaacttCagaca 1635978 1636133 R ynfN ynfNp1 Sigma70 1636365 1636370 ATGTAT 21 1636338 1636343 TACATT 1636332 2.393 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaATGTATcttttgtaaatcaatgatgatTACATTtgataAtattt 1635978 1636133 R ynfN ynfNp2 Sigma70 1636357 1636362 TTTGTA 20 1636331 1636336 GATAAT 1636325 2.694 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctTTTGTAaatcaatgatgattacatttGATAATatttcAcaata 1635978 1636133 R ynfN ynfNp3 Sigma70 1636234 1636239 TTCGAT 19 1636209 1636214 TAACAT 1636203 2.75 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctaTTCGATggatactcacatactacggTAACATcatgaAaaaaa 1635978 1636133 R ynfN ynfNp4 Sigma70 1636248 1636253 TTGCTT 17 1636225 1636230 TACTCA 1636218 3.726 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTGCTTggtgtctattcgatggaTACTCAcatactAcggta 1635978 1636133 R ynfN ynfNp5 Sigma70 1636248 1636253 TTGCTT 15 1636227 1636232 GATACT 1636221 4.25 high homology 4.45E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTGCTTggtgtctattcgatgGATACTcacatActacg 1635978 1636133 R ynfN ynfNp6 Sigma70 1636356 1636361 TTGTAA 21 1636329 1636334 TAATAT 1636323 4.633 high homology 2.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atcttTTGTAAatcaatgatgattacattTGaTAATATttcacAatact 1637054 1637551 R rzpQ rzpQp2 Sigma70 1637630 1637635 TTGCCG 19 1637605 1637610 TACGGT 1637598 3.1 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgcgaTTGCCGcattcgttcaaataacTGtTACGGTcaggttAttcgt 1637054 1637551 R rzpQ rzpQp3 Sigma70 1637709 1637714 TTTATA 17 1637686 1637691 GATCGT 1637681 3.166 good homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgtTTTATAagcggctgaatgctggtGATCGTaaagGtgcat 1639879 1640091 F cspF cspFp2 Sigma70 1639758 1639763 TTGAAC 20 1639784 1639789 TAGACA 1639794 2.574 poor homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catagTTGAACatatgaagcaatgtttatttTAGACAtccaGccatc 1639879 1640091 F cspF cspFp3 Sigma70 1639729 1639734 TTCAAA 18 1639753 1639758 CATAGT 1639764 3.008 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttcTTCAAAccgacgcaatcattaacgCATAGTtgaacAtatga 1639879 1640091 F cspF cspFp4 Sigma70 1639820 1639825 ATAGCT 17 1639843 1639848 TATAGT 1639854 3.146 good homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaactATAGCTttcttcaggaacgtgtgTATAGTgcgccAagtta 1639879 1640091 F cspF cspFp5 Sigma70 1639694 1639699 CTGCTT 17 1639717 1639722 TATCGT 1639728 3.236 good homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagaaCTGCTTtagtaaactacttcgtaTATCGTctgttCttcaa 1639879 1640091 F cspF cspFp6 Sigma70 1639758 1639763 TTGAAC 15 1639779 1639784 TATTTT 1639789 4.22 high homology 4.82E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catagTTGAACatatgaagcaatgttTATTTTagacAtccag 1639879 1640091 F cspF cspFp7 Sigma70 1639682 1639687 CTGAAA 15 1639703 1639708 TAAACT 1639714 4.32 high homology 3.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacacCTGAAAtgagaactgctttagTAAACTacttcGtatat 1640513 1641265 R quuQ quuQp1 Sigma70 1641386 1641391 ATCACA 16 1641364 1641369 TACAGT 1641359 2.393 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcATCACAacgagctgcatacggaTACAGTggcaTttgaa 1642675 1642926 R rem remp2 Sigma70 1643029 1643034 TTGAAG 18 1643005 1643010 TAGAAT 1642999 5.038 high homology 1.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTGAAGttctggacggtgccggaaTAGAATcaaaaAtactt 1643143 1643298 R hokD hokDp1 Sigma70 1643356 1643361 ATGACA 15 1643335 1643340 GAAGGT 1643330 2.07 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcATGACAtctctgtttcgcaccGAAGGTgacaCttctg 1643143 1643298 R hokD hokDp2 Sigma70 1643420 1643425 TTGGGA 18 1643396 1643401 TATATA 1643390 2.708 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTGGGAaaagagaacgctcggaagTATATAgcgagGcggtc 1643143 1643298 R hokD hokDp3 Sigma70 1643356 1643361 ATGACA 21 1643329 1643334 GACACT 1643324 2.743 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcATGACAtctctgtttcgcaccgaaggtGACACTtctgCtttgc 1643143 1643298 R hokD hokDp4 Sigma70 1643468 1643473 TTGTAT 16 1643446 1643451 GAAAGT 1643441 3.183 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgccTTGTATaccaggttatagacgaGAAAGTtgtcGttttc 1643921 1644226 F ydfV ydfVp1 Sigma70 1643833 1643838 TTTCAA 21 1643860 1643865 TAAGTT 1643870 3.153 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTTCAAgcgcggcgtaagaacgcgcttTAAGTTcatcGtcaat 1645958 1646365 F dicA dicAp1 Sigma70 1645889 1645894 TTGTTA 18 1645913 1645918 GATGTT 1645924 2.708 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTGTTAgtcataactaacaagataGATGTTaacaaAaacat 1645958 1646365 F dicA dicAp2 Sigma70 1645917 1645922 TTAACA 20 1645943 1645948 TAGCAT 1645954 2.824 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agatgTTAACAaaaacatagtcaatacgattTAGCATtagctAactat 1645958 1646365 F dicA dicAp5 Sigma70 1645866 1645871 TTTAAG 15 1645887 1645892 TATTGT 1645898 3.61 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagtTTTAAGcatttaaaacaccttTATTGTtagtcAtaact 1646532 1646687 F ydfA ydfAp1 Sigma70 1646309 1646314 TTCAAT 16 1646331 1646336 TACTAA 1646343 2.343 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacTTCAATaaactctttgaagaatTACTAAaagcccGtcagc 1646532 1646687 F ydfA ydfAp3 Sigma70 1646288 1646293 ATGCGA 20 1646314 1646319 TAAACT 1646325 2.704 poor homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgaaATGCGAgctcgagtaaaaaacttcaaTAAACTctttgAagaat 1646532 1646687 F ydfA ydfAp5 Sigma70 1646386 1646391 TTACCA 18 1646410 1646415 TAGCAT 1646421 3.248 good homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcttTTACCAcatcaattatgttagctaTAGCATacaaaAtcact 1646532 1646687 F ydfA ydfAp8 Sigma70 1646426 1646431 TTGACC 17 1646449 1646454 TAATCT 1646460 5.266 high homology 3.50E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcacTTGACCgatatgttagtcatggcTAATCTtgtttGcatca 1647406 1647458 F dicF dicFp1 Sigma70 1647167 1647172 CTGAAA 21 1647194 1647199 GACCAT 1647205 1.753 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaCTGAAAggatatttccctgaaaagtcaGACCATaacgcGaaagc 1647406 1647458 F dicF dicFp3 Sigma70 1647225 1647230 CTGGTT 17 1647248 1647253 TAAATT 1647260 3.296 good homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtagCTGGTTcatagatagcctgtcgtTAAATTttcgtcGaccgt 1650920 1651939 R rspB rspBp1 Sigma70 1652031 1652036 ATGAAA 20 1652005 1652010 TATGAA 1652000 2.354 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgATGAAAagctggcggcgaaatatcccTATGAAcctgCttatc 1653371 1653697 R ynfA ynfAp1 Sigma70 1653742 1653747 ATGATA 21 1653715 1653720 CATGAT 1653710 1.813 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgATGATAttatgtcgccctataactataCATGATgtcaAtaaga 1653371 1653697 R ynfA ynfAp2 Sigma70 1653751 1653756 TTTATA 20 1653725 1653730 TATAAC 1653719 1.984 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtgTTTATAttgatgatattatgtcgcccTATAACtatacAtgatg 1653371 1653697 R ynfA ynfAp3 Sigma70 1653820 1653825 TTCCCT 18 1653796 1653801 GATTCT 1653790 2.968 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTCCCTgtatgaatgattaaaggtGATTCTacaccAtccac 1653371 1653697 R ynfA ynfAp5 Sigma70 1653745 1653750 TTGATG 20 1653719 1653724 TATACA 1653714 3.344 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTGATGatattatgtcgccctataacTATACAtgatGtcaat 1654771 1655481 R ynfC ynfCp2 Sigma70 1655555 1655560 TTTAAG 21 1655528 1655533 TACTGT 1655523 2.823 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttcTTTAAGcatagcatttaacgtgtaaagTACTGTatttGctact 1654771 1655481 R ynfC ynfCp3 Sigma70 1655521 1655526 TTTGCT 21 1655494 1655499 TACTCT 1655488 2.873 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTTGCTactatgattgagaatcatctcTACTCTctggtGactgt 1654771 1655481 R ynfC ynfCp4 Sigma70 1655542 1655547 TTTAAC 20 1655516 1655521 TACTAT 1655510 2.874 poor homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tagcaTTTAACgtgtaaagtactgtattTGcTACTATgattgAgaatc 1654771 1655481 R ynfC ynfCp5 Sigma70 1655536 1655541 GTGTAA 17 1655513 1655518 TATGAT 1655507 3.126 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaacGTGTAAagtactgtatttgctacTATGATtgagaAtcatc 1654771 1655481 R ynfC ynfCp6 Sigma70 1655555 1655560 TTTAAG 16 1655533 1655538 TAAAGT 1655527 3.703 good homology 0.000101039 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttcTTTAAGcatagcatttaacgtgTAAAGTactgtAtttgc 1655589 1655894 F ynfD ynfDp2 Sigma70 1655507 1655512 TTCTCA 19 1655532 1655537 TACTTT 1655542 2.11 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgaTTCTCAatcatagtagcaaatacagTACTTTacacGttaaa 1655589 1655894 F ynfD ynfDp3 Sigma70 1655471 1655476 TTGTAT 21 1655498 1655503 TAGAGA 1655509 2.423 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTGTATttcacaacagtcaccagagagTAGAGAtgattCtcaat 1655589 1655894 F ynfD ynfDp4 Sigma70 1655535 1655540 TTTACA 16 1655557 1655562 TAAAGA 1655567 2.993 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtacTTTACAcgttaaatgctatgctTAAAGAagttAtcttc 1655589 1655894 F ynfD ynfDp5 Sigma70 1655503 1655508 ATGATT 18 1655527 1655532 TACAGT 1655538 3.548 good homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagagATGATTctcaatcatagtagcaaaTACAGTactttAcacgt 1663339 1664595 F clcB clcBp1 Sigma70 1663174 1663179 ATTACG 21 1663201 1663206 TACAGT 1663212 1.843 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacgATTACGcgcaatccggcaataataggtTACAGTgtcacGttttt 1663339 1664595 F clcB clcBp2 Sigma70 1663282 1663287 TTTCAT 18 1663306 1663311 CATCAT 1663316 2.188 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgTTTCATtgcccatttctgctcatgCATCATctacAcatct 1664548 1665243 R ynfK ynfKp1 Sigma70 1665307 1665312 ATAACT 18 1665283 1665288 TATTTT 1665278 2.518 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcATAACTtagactttcaaggttaatTATTTTcctgGtttat 1664548 1665243 R ynfK ynfKp2 Sigma70 1665322 1665327 TTGGGC 15 1665301 1665306 TAGACT 1665295 2.62 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTGGGCcaggaaagcataactTAGACTttcaaGgttaa 1664548 1665243 R ynfK ynfKp4 Sigma70 1665366 1665371 TTAACA 17 1665343 1665348 CAAAAT 1665338 3.866 good homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggTTAACAttttttaactgttctacCAAAATttgcGctatc 1664548 1665243 R ynfK ynfKp5 Sigma70 1665296 1665301 TTTCAA 20 1665270 1665275 TATATT 1665264 3.914 good homology 4.32E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagacTTTCAAggttaattattttcctggttTATATTtgtgaAgcata 1664548 1665243 R ynfK ynfKp6 Sigma70 1665386 1665391 TTGATT 15 1665365 1665370 TAACAT 1665359 4.63 high homology 2.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttgTTGATTcgtctgttgcagggtTAACATtttttAactgt 1666723 1667616 R ynfL ynfLp1 Sigma70 1667652 1667657 CTGTCT 20 1667626 1667631 TAAGAT 1667620 2.064 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttCTGTCTaatatattaataatctcaaaTAAGATgttttAaatat 1666723 1667616 R ynfL ynfLp2 Sigma70 1667821 1667826 ATAAAT 19 1667796 1667801 TAAATT 1667790 2.42 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcATAAATtgcggcgtaccgcgtttaaTAAATTgatttGgctga 1666723 1667616 R ynfL ynfLp4 Sigma70 1667657 1667662 TTGTTC 15 1667636 1667641 TAATCT 1667630 3.34 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgaaTTGTTCtgtctaatatattaaTAATCTcaaatAagatg 1666723 1667616 R ynfL ynfLp6 Sigma70 1667708 1667713 TTGCTA 21 1667681 1667686 TATACA 1667676 4.163 high homology 4.15E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccTTGCTAaatatgcctgtagatcaggctTATACAtaggGtagga 1667723 1668976 F ynfM ynfMp1 Sigma70 1667642 1667647 TTAATA 18 1667666 1667671 GATTTT 1667676 2.728 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTAATAtattagacagaacaattcGATTTTcctaCcctat 1667723 1668976 F ynfM ynfMp2 Sigma70 1667612 1667617 TTCATA 17 1667635 1667640 GAGATT 1667645 2.896 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTCATAtttaaaacatcttatttGAGATTattaAtatat 1667723 1668976 F ynfM ynfMp3 Sigma70 1667618 1667623 TTTAAA 16 1667640 1667645 TATTAA 1667652 3.373 good homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTTAAAacatcttatttgagatTATTAAtatattAgacag 1667723 1668976 F ynfM ynfMp4 Sigma70 1667618 1667623 TTTAAA 19 1667643 1667648 TAATAT 1667654 4.4 high homology 2.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTTAAAacatcttatttgagattatTAATATattagAcagaa 1667723 1668976 F ynfM ynfMp5 Sigma70 1667619 1667624 TTAAAA 21 1667646 1667651 TATATT 1667657 4.453 high homology 2.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatTTAAAAcatcttatttgagattattaaTATATTagacaGaacaa 1669984 1670805 F ydgD ydgDp1 Sigma70 1669911 1669916 TTTCAT 16 1669933 1669938 TATTTA 1669944 2.093 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccacTTTCATcccgtcccgtctatagTATTTAtgaggGtttgc 1669984 1670805 F ydgD ydgDp2 Sigma70 1669935 1669940 TTTATG 19 1669960 1669965 CATAAT 1669971 2.21 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtaTTTATGagggtttgcttttaataatCATAATtacccAccaga 1669984 1670805 F ydgD ydgDp3 Sigma70 1669901 1669906 TTACTC 21 1669928 1669933 TATAGT 1669938 3.163 good homology 0.000128446 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTACTCccactttcatcccgtcccgtcTATAGTatttAtgagg 1669984 1670805 F ydgD ydgDp5 Sigma70 1669820 1669825 TTGAGT 16 1669842 1669847 TATTTT 1669852 3.713 good homology 0.000103081 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctTTGAGTtcattctgatcatcctTATTTTatgcGcactg 1669984 1670805 F ydgD ydgDp6 Sigma70 1669774 1669779 TTAGCA 17 1669797 1669802 TAGTAT 1669808 3.886 good homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgtTTAGCAccgcctttagcggagggTAGTATggtggGccgtt 1670844 1671173 R mdtI mdtIp1 Sigma70 1671412 1671417 ATGCTG 20 1671386 1671391 TATATT 1671380 2.404 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaATGCTGgtgatgatttctctgtcgtaTATATTtctctCtttcg 1670844 1671173 R mdtI mdtIp2 Sigma70 1671366 1671371 TTAAAA 15 1671345 1671350 TAGCTT 1671340 2.61 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccgTTAAAAaaatcgccttaggcgTAGCTTatgcGctgtg 1670844 1671173 R mdtI mdtIp5 Sigma70 1671301 1671306 TTGTTT 18 1671277 1671282 GAAAGT 1671271 3.268 good homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaccTTGTTTagcgttttgttattcgacGAAAGTttatcGctgat 1672996 1674384 R pntB pntBp1 Sigma70 1674616 1674621 TTGTCG 16 1674594 1674599 GAATGT 1674588 1.983 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTGTCGgttattacgtggtgtgGAATGTatcgcAcgcgc 1672996 1674384 R pntB pntBp5 Sigma70 1674477 1674482 TTTTAT 21 1674450 1674455 TAATAT 1674444 3.423 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttagTTTTATcgcggtgcttatagccagcatTAATATtttcgGtggct 1672996 1674384 R pntB pntBp7 Sigma70 1674434 1674439 TTCACC 17 1674411 1674416 GAAAAT 1674405 3.616 good homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggcTTCACCgtgactcagcgcatgctGAAAATgttccGcaaaa 1676451 1677395 F ydgH ydgHp1 Sigma70 1676377 1676382 ATGCAA 20 1676403 1676408 TAATAA 1676413 2.034 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaATGCAAtaatcagccacgtttctcgtTAATAAcaatAccagt 1676451 1677395 F ydgH ydgHp2 Sigma70 1676325 1676330 TTGGCT 15 1676346 1676351 GAAAAA 1676356 2.53 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTGGCTtaaggaatgtgatatGAAAAAtgacGcagac 1676451 1677395 F ydgH ydgHp3 Sigma70 1676222 1676227 CTACTT 17 1676245 1676250 TACAAT 1676257 3.096 poor homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaCTACTTaacattaaattaacttaTACAATtcagttGcttca 1676451 1677395 F ydgH ydgHp4 Sigma70 1676319 1676324 TTAAAA 18 1676343 1676348 TATGAA 1676354 3.408 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caggaTTAAAAttggcttaaggaatgTGaTATGAAaaatgAcgcag 1677581 1678963 F ydgI ydgIp1 Sigma70 1677544 1677549 TTTATT 15 1677565 1677570 TAATCA 1677575 2.53 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTTATTcttcttatcacgtttTAATCActggAtatcg 1677581 1678963 F ydgI ydgIp2 Sigma70 1677516 1677521 CTCCAT 17 1677539 1677544 TAATAT 1677550 3.126 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaCTCCATttttatgcgttttgcccTAATATttattCttctt 1677581 1678963 F ydgI ydgIp4 Sigma70 1677523 1677528 TTTATG 17 1677546 1677551 TATTCT 1677556 4.486 high homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattTTTATGcgttttgccctaatattTATTCTtcttAtcacg 1679719 1680054 R ydgC ydgCp1 Sigma70 1680131 1680136 TTACTT 15 1680110 1680115 TAAACA 1680103 2.7 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTACTTactatcaatcgtttcTAAACAagttttCatcag 1679719 1680054 R ydgC ydgCp3 Sigma70 1680114 1680119 TTTCTA 17 1680091 1680096 TATTCT 1680086 4.956 high homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTTCTAaacaagttttcatcaggTATTCTactgAtgact 1682283 1683212 F tus tusp3 Sigma70 1682221 1682226 ATGGTC 20 1682247 1682252 TAAAAT 1682257 2.274 poor homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgATGGTCaagtcaccacgactgtgctaTAAAATaagtAtgttg 1682283 1683212 F tus tusp4 Sigma70 1682246 1682251 ATAAAA 15 1682267 1682272 TAAAGT 1682278 3.08 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgctATAAAAtaagtatgttgtaacTAAAGTggttaAtatta 1689610 1690875 R uidC uidCp1 Sigma70 1690984 1690989 ATTCAA 19 1690959 1690964 GATAAT 1690953 2.29 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaATTCAAagaaatcgtggttgaaattGATAATcgtaaAaaagt 1689610 1690875 R uidC uidCp2 Sigma70 1691015 1691020 TTATCT 19 1690990 1690995 TAAAAA 1690984 2.31 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaTTATCTggttttatccgctcacggaTAAAAAattcaAagaaa 1689610 1690875 R uidC uidCp3 Sigma70 1690932 1690937 TTAATC 15 1690911 1690916 TAATAT 1690905 3.3 good homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaTTAATCagcgatatcactaatTAATATtcaatAaaaat 1689610 1690875 R uidC uidCp4 Sigma70 1690912 1690917 TTAATA 17 1690889 1690894 GAACAT 1690883 3.336 good homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actaaTTAATAttcaataaaaataatcaGAACATcaaagGtgcaa 1689610 1690875 R uidC uidCp5 Sigma70 1691044 1691049 TTGCGG 21 1691017 1691022 TATTAT 1691012 3.683 good homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaccTTGCGGatttatgctactggcattcgtTATTATctggTtttat 1689610 1690875 R uidC uidCp6 Sigma70 1691057 1691062 TTGCCT 16 1691035 1691040 TATGCT 1691030 4.723 high homology 1.56E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcaaTTGCCTtagtaccttgcggattTATGCTactgGcattc 1700257 1701258 F add addp1 Sigma70 1700213 1700218 TTTATA 16 1700235 1700240 TATCCA 1700246 2.353 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTTATAatggtgcgcacttttaTATCCAgaaaaAgagtg 1700257 1701258 F add addp3 Sigma70 1700146 1700151 TTCGTT 18 1700170 1700175 TAAAAA 1700182 2.568 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTCGTTaaccccaattgcgcaacgTAAAAAatcgttGcgcaa 1700257 1701258 F add addp6 Sigma70 1700190 1700195 GTGGAT 19 1700215 1700220 TATAAT 1700226 2.78 poor homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatcGTGGATttttaccctgctttgttttTATAATggtgcGcactt 1701292 1702332 R ydgJ ydgJp1 Sigma70 1702394 1702399 TTAAAC 20 1702368 1702373 TAGTGT 1702362 1.944 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTAAACtgttgagcgtgggtaaaggaTAGTGTcaaatAgccat 1701292 1702332 R ydgJ ydgJp2 Sigma70 1702468 1702473 TTAGCT 20 1702442 1702447 TATTTT 1702437 2.484 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTAGCTtttgtcgttggaaaattcgcTATTTTtttgActtaa 1701292 1702332 R ydgJ ydgJp3 Sigma70 1702394 1702399 TTAAAC 18 1702370 1702375 GATAGT 1702364 2.908 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTAAACtgttgagcgtgggtaaagGATAGTgtcaaAtagcc 1701292 1702332 R ydgJ ydgJp6 Sigma70 1702455 1702460 TTGGAA 20 1702429 1702434 TAAGTT 1702423 3.334 good homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgTTGGAAaattcgctatttttttgactTAAGTTaaacaAcatcc 1701292 1702332 R ydgJ ydgJp7 Sigma70 1702477 1702482 TTGCGA 19 1702452 1702457 GAAAAT 1702446 3.4 good homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtttTTGCGAtatttagcttttgtcgttgGAAAATtcgctAttttt 1701292 1702332 R ydgJ ydgJp8 Sigma70 1702416 1702421 ATCCCT 17 1702393 1702398 TAAACT 1702387 3.606 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaacATCCCTtattgctggcaggttatTAAACTgttgaGcgtgg 1702973 1703188 F cnu cnup1 Sigma70 1702930 1702935 ATAATA 20 1702956 1702961 TATTTT 1702966 1.784 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactaATAATAcctacccctttggtattaatTATTTTatggAccttt 1702973 1703188 F cnu cnup2 Sigma70 1702785 1702790 TTCGAT 19 1702810 1702815 GATAGT 1702821 2.32 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttgTTCGATgttgttggtgattgtcaggGATAGTaaagcGcgtta 1702973 1703188 F cnu cnup3 Sigma70 1702907 1702912 TTGGTG 15 1702928 1702933 TAATAA 1702939 2.43 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacttTTGGTGaaattttatcatcacTAATAAtacctAcccct 1702973 1703188 F cnu cnup4 Sigma70 1702859 1702864 TTTGCC 16 1702881 1702886 TATTGT 1702891 2.433 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTTGCCatcagcgcattcttatTATTGTaataAcacaa 1702973 1703188 F cnu cnup5 Sigma70 1702830 1702835 TTTTCA 18 1702854 1702859 GAATAT 1702865 2.678 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactcTTTTCAgagcagtttttcatccctGAATATttgccAtcagc 1702973 1703188 F cnu cnup6 Sigma70 1702751 1702756 TTGTCG 21 1702778 1702783 TATCTT 1702789 2.783 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcacTTGTCGgatattaaaccaggaatttatTATCTTgttcgAtgttg 1702973 1703188 F cnu cnup7 Sigma70 1702860 1702865 TTGCCA 20 1702886 1702891 TAATAA 1702897 3.394 good homology 5.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTGCCAtcagcgcattcttattattgTAATAAcacaaGcgttc 1702973 1703188 F cnu cnup8 Sigma70 1702852 1702857 CTGAAT 20 1702878 1702883 TATTAT 1702888 3.574 good homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catccCTGAATatttgccatcagcgcattctTATTATtgtaAtaaca 1702973 1703188 F cnu cnup9 Sigma70 1702751 1702756 TTGTCG 18 1702775 1702780 TATTAT 1702785 4.438 high homology 5.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcacTTGTCGgatattaaaccaggaattTATTATcttgTtcgat 1702973 1703188 F cnu cnup10 Sigma70 1702802 1702807 TTGTCA 17 1702825 1702830 TACTCT 1702836 4.956 high homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgaTTGTCAgggatagtaaagcgcgtTACTCTtttcaGagcag 1716090 1716419 R mliC mliCp1 Sigma70 1716628 1716633 TTGGCT 20 1716602 1716607 GACGCT 1716596 2.054 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTGGCTttcgcctggcttgcctggcgGACGCTggcggGattac 1716090 1716419 R mliC mliCp3 Sigma70 1716499 1716504 CTGAAT 21 1716472 1716477 TACACT 1716467 3.633 good homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaCTGAATttttcttaccgcgtctgccgtTACACTtggaAcgtta 1716517 1717626 R anmK anmKp2 Sigma70 1717661 1717666 TTGAGT 19 1717636 1717641 GAAAAA 1717630 2.1 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgtTTGAGTggtgcgcaaacgtcagattGAAAAAggatgAactat 1716517 1717626 R anmK anmKp3 Sigma70 1717746 1717751 ATGATG 16 1717724 1717729 TAATGT 1717717 2.403 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattcATGATGattattgatttgaagaTAATGTtttactAccaac 1716517 1717626 R anmK anmKp4 Sigma70 1717763 1717768 TTATAA 16 1717741 1717746 GATTAT 1717734 2.563 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaTTATAAacaaaacattcatgatGATTATtgatttGaagat 1716517 1717626 R anmK anmKp7 Sigma70 1717783 1717788 ATGAAA 15 1717762 1717767 TATAAA 1717757 3.65 good homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataATGAAAgtaggatcaaccaatTATAAAcaaaAcattc 1716517 1717626 R anmK anmKp8 Sigma70 1717749 1717754 TTCATG 17 1717726 1717731 GATAAT 1717720 3.846 good homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaacaTTCATGatgattattgatttgaaGATAATgttttActacc 1716517 1717626 R anmK anmKp9 Sigma70 1717731 1717736 TTGAAG 21 1717704 1717709 TAAAAA 1717697 3.913 good homology 5.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgatTTGAAGataatgttttactaccaacggTAAAAAtcggtcAttccg 1718414 1718848 R slyA slyAp4 Sigma70 1719031 1719036 TTTACG 16 1719009 1719014 TAGATT 1719003 2.763 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attccTTTACGaccgaatatattgcgtTAGATTaataaAtattc 1718414 1718848 R slyA slyAp5 Sigma70 1719060 1719065 TTGAGC 15 1719039 1719044 TAGATT 1719033 2.8 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTGAGCataaacttcacaaagTAGATTcctttAcgacc 1718414 1718848 R slyA slyAp6 Sigma70 1718936 1718941 ATGCAG 20 1718910 1718915 TACAAT 1718905 2.854 poor homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaATGCAGcaatacatttgttttagcaaTACAATtgctGcacac 1718414 1718848 R slyA slyAp7 Sigma70 1718905 1718910 TTGCTG 19 1718880 1718885 CATAAT 1718874 2.93 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTGCTGcacactattctaaaagccgCATAATatcttAgcaag 1718414 1718848 R slyA slyAp10 Sigma70 1719065 1719070 TTGCAT 15 1719044 1719049 CAAAGT 1719038 3.19 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcctgTTGCATtgagcataaacttcaCAAAGTagattCcttta 1718414 1718848 R slyA slyAp13 Sigma70 1718905 1718910 TTGCTG 21 1718878 1718883 TAATAT 1718873 4.143 high homology 6.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTGCTGcacactattctaaaagccgcaTAATATcttaGcaagc 1718414 1718848 R slyA slyAp14 Sigma70 1718917 1718922 TTAGCA 17 1718894 1718899 TATTCT 1718889 4.606 high homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTAGCAatacaattgctgcacacTATTCTaaaaGccgca 1722760 1723656 R ydhF ydhFp2 Sigma70 1723842 1723847 GTGATG 16 1723820 1723825 TAAAAT 1723814 2.453 poor homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtcGTGATGagcgttttaactggaaTAAAATgagcgAtggcg 1722760 1723656 R ydhF ydhFp3 Sigma70 1723712 1723717 ATCACT 20 1723686 1723691 TATACT 1723679 2.864 poor homology 7.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaccATCACTcttttgaacctaatcttgcgTATACTcctctcAtatct 1723705 1723944 R ydhL ydhLp1 Sigma70 1723991 1723996 TTGGAC 20 1723965 1723970 TAATAA 1723960 2.094 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctactTTGGACattaacagcttcaataaTGgTAATAAtcttAtctga 1723705 1723944 R ydhL ydhLp3 Sigma70 1723984 1723989 TTAACA 16 1723962 1723967 TAATCT 1723956 4.073 high homology 5.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggacaTTAACAgcttcaataatggtaaTAATCTtatctGaggag 1726371 1727018 F rnt rntp1 Sigma70 1726304 1726309 TTTACT 21 1726331 1726336 CATAAT 1726341 3.083 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcatcTTTACTgcatcgacaagtaatattTGtCATAATgcgcGctgca 1734145 1735314 R ydhP ydhPp1 Sigma70 1735419 1735424 ATGGCA 20 1735393 1735398 TATTTT 1735387 2.344 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcaaaATGGCAaaagtgttttctcttttTGtTATTTTcatttTtttgt 1734145 1735314 R ydhP ydhPp3 Sigma70 1735374 1735379 TTGCTG 21 1735347 1735352 GAATAT 1735341 2.923 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTGCTGtcatgctttcgccactttaatGAATATcgcgtAatgac 1734145 1735314 R ydhP ydhPp4 Sigma70 1735374 1735379 TTGCTG 17 1735351 1735356 TAATGA 1735345 3.176 good homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTGCTGtcatgctttcgccacttTAATGAatatcGcgtaa 1734145 1735314 R ydhP ydhPp5 Sigma70 1735551 1735556 TTAAAT 16 1735529 1735534 GATTAT 1735522 3.233 good homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaccTTAAATtttcactggtaacaacGATTATcgtcctCggttt 1734145 1735314 R ydhP ydhPp6 Sigma70 1735551 1735556 TTAAAT 19 1735526 1735531 TATCGT 1735520 3.33 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaccTTAAATtttcactggtaacaacgatTATCGTcctcgGtttga 1736890 1737822 R ydhB ydhBp1 Sigma70 1737954 1737959 CTAAAA 20 1737928 1737933 TATATT 1737922 2.434 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagaCTAAAAatcttttcccaggttgcatgTATATTctctaAatctc 1736890 1737822 R ydhB ydhBp4 Sigma70 1737881 1737886 GTGAAA 17 1737858 1737863 TAATAT 1737852 3.966 good homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaGTGAAAttagtgttgtgaaacggTAATATttgatGactgg 1737935 1739146 F ydhC ydhCp2 Sigma70 1737853 1737858 ATCAAA 19 1737878 1737883 TAATTT 1737889 1.98 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtcATCAAAtattaccgtttcacaacacTAATTTcactcCctaca 1737935 1739146 F ydhC ydhCp5 Sigma70 1737841 1737846 TTGAAA 15 1737862 1737867 TACCGT 1737873 4.23 high homology 7.28E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTGAAAccagtcatcaaatatTACCGTttcacAacact 1737935 1739146 F ydhC ydhCp6 Sigma70 1737868 1737873 TTCACA 17 1737891 1737896 TACACT 1737902 5.196 high homology 5.55E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgtTTCACAacactaatttcactcccTACACTttgcgGcggtg 1740625 1741266 R ribC ribCp1 Sigma70 1741318 1741323 TTTCCA 19 1741293 1741298 GAATGT 1741288 2.25 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTTCCAcctgctattgtgctgaacaGAATGTcttaActgat 1740625 1741266 R ribC ribCp2 Sigma70 1741466 1741471 TTTTAT 19 1741441 1741446 TAAAAA 1741436 2.5 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaccTTTTATttgtagttatatgagagacTAAAAAgccgCctgaa 1740625 1741266 R ribC ribCp3 Sigma70 1741331 1741336 CTGGTA 18 1741307 1741312 TATTGT 1741301 2.858 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cttcaCTGGTAagggcgttttccaccTGcTATTGTgctgaAcagaa 1740625 1741266 R ribC ribCp4 Sigma70 1741318 1741323 TTTCCA 17 1741295 1741300 CAGAAT 1741289 3.046 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTTCCAcctgctattgtgctgaaCAGAATgtcttAactga 1740625 1741266 R ribC ribCp5 Sigma70 1741509 1741514 ATAACA 15 1741488 1741493 TATACT 1741482 3.63 good homology 5.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgctaATAACAgacgcgcttcacTGaTATACTtctgcAcgtga 1741481 1742854 F mdtK mdtKp1 Sigma70 1741373 1741378 TTAATA 20 1741399 1741404 GAATTT 1741410 1.724 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagaaTTAATAaatcctcgctacaatagactGAATTTcccctGcttct 1741481 1742854 F mdtK mdtKp3 Sigma70 1741372 1741377 ATTAAT 15 1741393 1741398 TAGACT 1741404 2.7 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagaATTAATaaatcctcgctacaaTAGACTgaattTcccct 1741481 1742854 F mdtK mdtKp6 Sigma70 1741330 1741335 TTACCA 19 1741355 1741360 TATTTT 1741367 3.42 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcccTTACCAgtgaaggggtaagaatggcTATTTTttcactGgagaa 1741481 1742854 F mdtK mdtKp7 Sigma70 1741421 1741426 TTGCTG 18 1741445 1741450 TAGTCT 1741456 3.678 good homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctttTTGCTGcccattcaggcggcttttTAGTCTctcatAtaact 1741481 1742854 F mdtK mdtKp9 Sigma70 1741361 1741366 TTCACT 21 1741388 1741393 TACAAT 1741399 4.223 high homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attttTTCACTggagaattaataaatcctcgcTACAATagactGaattt 1744724 1745029 F ydhR ydhRp1 Sigma70 1744644 1744649 TTCCCT 21 1744671 1744676 TACGTT 1744682 2.323 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctttTTCCCTctgtttcttctctgtatccaaTACGTTaaaagAtttac 1744724 1745029 F ydhR ydhRp2 Sigma70 1744661 1744666 CTGTAT 18 1744685 1744690 TACACT 1744697 3.128 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttctCTGTATccaatacgttaaaagattTACACTgtcttcGtatgc 1745155 1746759 F ydhS ydhSp1 Sigma70 1745095 1745100 ATCTCA 21 1745122 1745127 TAAATT 1745133 1.673 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATCTCAaccaaacttatctgataacacTAAATTcgaaaGaatgc 1745155 1746759 F ydhS ydhSp2 Sigma70 1745060 1745065 TTTCAT 17 1745083 1745088 CAAATT 1745094 2.776 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccctTTTCATccctgtctgaaatttctCAAATTctaaaAatctc 1746771 1747583 R ydhT ydhTp2 Sigma70 1747674 1747679 TTTTTT 15 1747653 1747658 TATCTT 1747646 2.25 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctcTTTTTTatcttcggtcatcttTATCTTtgcaccAcgggg 1746771 1747583 R ydhT ydhTp3 Sigma70 1747806 1747811 ATGTAT 16 1747784 1747789 TACTAT 1747778 2.603 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtgtcATGTATggattgctgccgtTGtTACTATtgacgGggctg 1752956 1753165 R ydhZ ydhZp2 Sigma70 1753216 1753221 TTTAAT 20 1753190 1753195 GATAGT 1753185 3.014 poor homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttgTTTAATtggttagattgatatatgctGATAGTtggcAtgata 1752956 1753165 R ydhZ ydhZp4 Sigma70 1753230 1753235 TTGTTT 18 1753206 1753211 TAGATT 1753200 3.628 good homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGTTTgatttttgtttaattggtTAGATTgatatAtgctg 1752956 1753165 R ydhZ ydhZp5 Sigma70 1753219 1753224 TTGTTT 17 1753196 1753201 TATGCT 1753191 4.926 high homology 7.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGTTTaattggttagattgataTATGCTgataGttggc 1755745 1756749 R ynhG ynhGp1 Sigma70 1756878 1756883 TTTCAT 20 1756852 1756857 GATGGT 1756847 1.914 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagcTTTCATccggttggctcacattgccgGATGGTcaatGtttac 1755745 1756749 R ynhG ynhGp2 Sigma70 1756864 1756869 CTCACA 19 1756839 1756844 TACACT 1756833 2.46 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttggCTCACAttgccggatggtcaatgttTACACTgacctGcacag 1755745 1756749 R ynhG ynhGp3 Sigma70 1756921 1756926 TTCGCG 20 1756895 1756900 TAAACT 1756889 2.704 poor homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcaaTTCGCGccaaagccgctgcacttagcTAAACTaaaagGacagc 1756898 1757314 R sufE sufEp1 Sigma70 1757534 1757539 TTTAAT 21 1757507 1757512 GATGTT 1757502 2.313 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTTAATctcggtaaacaccacgcctatGATGTTggcaGttttc 1756898 1757314 R sufE sufEp2 Sigma70 1757548 1757553 TTGGCG 19 1757523 1757528 TAAACA 1757518 2.77 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTGGCGttattgcttttaatctcggTAAACAccacGcctat 1756898 1757314 R sufE sufEp3 Sigma70 1757534 1757539 TTTAAT 18 1757510 1757515 TATGAT 1757505 4.688 high homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTTAATctcggtaaacaccacgccTATGATgttgGcagtt 1762737 1762804 R rydB rydBp2 Sigma70 1762978 1762983 TTGCCT 18 1762954 1762959 GATCCT 1762948 3.648 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctactTTGCCTggcgtctgggcgtgcattGATCCTgacttAatgcc 1762737 1762804 R rydB rydBp4 Sigma70 1762884 1762889 TTAATA 19 1762859 1762864 TATTGT 1762853 3.73 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccttcTTAATActgcttatctaccgccTGaTATTGTtcaaaAataat 1762737 1762804 R rydB rydBp5 Sigma70 1762884 1762889 TTAATA 17 1762861 1762866 GATATT 1762855 3.896 good homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttcTTAATActgcttatctaccgcctGATATTgttcaAaaata 1762958 1763146 R ydiH ydiHp1 Sigma70 1763199 1763204 TTATCT 18 1763175 1763180 TACTGT 1763170 2.688 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtcaTTATCTgcacagtaaacggtggtaTACTGTgcagGtcttg 1762958 1763146 R ydiH ydiHp3 Sigma70 1763199 1763204 TTATCT 16 1763177 1763182 TATACT 1763171 3.843 good homology 3.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggtcaTTATCTgcacagtaaacggTGgTATACTgtgcaGgtctt 1767098 1768210 F ydiK ydiKp1 Sigma70 1767002 1767007 TTAAAA 15 1767023 1767028 CATCAT 1767034 2.35 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctgTTAAAAaccgctgaaattgctCATCATtatgcAggtga 1767098 1768210 F ydiK ydiKp2 Sigma70 1767002 1767007 TTAAAA 21 1767029 1767034 TATGCA 1767040 2.833 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctgTTAAAAaccgctgaaattgctcatcatTATGCAggtgaGtttcg 1767098 1768210 F ydiK ydiKp3 Sigma70 1767002 1767007 TTAAAA 18 1767026 1767031 CATTAT 1767036 3.088 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctgTTAAAAaccgctgaaattgctcatCATTATgcagGtgagt 1768639 1768995 F ydiL ydiLp1 Sigma70 1768538 1768543 TTCCAA 21 1768565 1768570 GACTCT 1768576 2.243 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence actctTTCCAAtaatgttgcacaagatacTGtGACTCTcttcaAgccgt 1768639 1768995 F ydiL ydiLp2 Sigma70 1768443 1768448 GTGAAA 17 1768466 1768471 TAGTCT 1768478 3.136 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaGTGAAAcaacgaattgctgtgtgTAGTCTttgcccAtctcc 1768639 1768995 F ydiL ydiLp3 Sigma70 1768572 1768577 TTCAAG 15 1768593 1768598 TAATGT 1768604 3.15 good homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctctcTTCAAGccgtcagcaggcTGaTAATGTtatttAtattt 1768639 1768995 F ydiL ydiLp4 Sigma70 1768537 1768542 TTTCCA 16 1768559 1768564 TACTGT 1768570 3.173 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactcTTTCCAataatgttgcacaagaTACTGTgactcTcttca 1769095 1770309 F ydiM ydiMp2 Sigma70 1768967 1768972 ATGCAC 20 1768993 1768998 TAATTT 1769003 1.704 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attatATGCACacgatctggagcggcttTGtTAATTTttccAcagaa 1769095 1770309 F ydiM ydiMp4 Sigma70 1769020 1769025 TTGTTA 15 1769041 1769046 GATGCT 1769052 3.07 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgTTGTTAcaacaataatgaacgGATGCTgacacAacatc 1770536 1771801 F ydiN ydiNp1 Sigma70 1770436 1770441 ATGTAC 20 1770462 1770467 TATAGT 1770472 2.204 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgccATGTACccagggaaaatcatcttcagTATAGTaattAtgtaa 1770536 1771801 F ydiN ydiNp6 Sigma70 1770398 1770403 ATGACA 19 1770423 1770428 TAAACT 1770433 4.22 high homology 2.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaactATGACAtgcaatattcctggaaacaTAAACTttatGccatg 1773611 1775206 F ydiF ydiFp1 Sigma70 1773452 1773457 TTTTAC 15 1773473 1773478 TAATAT 1773483 2.84 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactaTTTTACaccaggcataagcaaTAATATttcgGcggga 1773611 1775206 F ydiF ydiFp2 Sigma70 1773428 1773433 ATGATT 16 1773450 1773455 TATTTT 1773461 3.003 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaATGATTtgcgcacggtattaacTATTTTacaccAggcat 1773611 1775206 F ydiF ydiFp3 Sigma70 1773365 1773370 TTGGCT 21 1773392 1773397 TAAAAA 1773402 3.613 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtatTTGGCTcggcggcaacttttggtgcggTAAAAAaagcGtctgc 1777641 1778405 F ydiQ ydiQp1 Sigma70 1777408 1777413 TTAGCG 19 1777433 1777438 TACACT 1777443 2.69 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTAGCGagagctaaacaagattattTACACTgaatGcaaga 1777641 1778405 F ydiQ ydiQp2 Sigma70 1777431 1777436 TTTACA 15 1777452 1777457 TACGGT 1777463 3.37 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTTACActgaatgcaagattgTACGGTcatggAataac 1785469 1786302 F ppsR ppsRp2 Sigma70 1785401 1785406 TTCTAC 20 1785427 1785432 TATGCT 1785438 2.004 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacgTTCTACgcttctgtgcgtttttaattTATGCTttcatAgaatt 1785469 1786302 F ppsR ppsRp3 Sigma70 1785276 1785281 TTGCGC 15 1785297 1785302 GACAAT 1785307 2.35 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcgTTGCGCaaatctgctctcttcGACAATttccAcataa 1785469 1786302 F ppsR ppsRp6 Sigma70 1785369 1785374 TTGAAG 21 1785396 1785401 TAACGT 1785407 3.683 good homology 6.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTGAAGgttcattttataaaccagacaTAACGTtctacGcttct 1785469 1786302 F ppsR ppsRp7 Sigma70 1785381 1785386 TTTATA 17 1785404 1785409 TACGCT 1785415 4.336 high homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTTATAaaccagacataacgttcTACGCTtctgtGcgttt 1785469 1786302 F ppsR ppsRp8 Sigma70 1785340 1785345 ATGAAA 18 1785364 1785369 TAAAAT 1785375 4.978 high homology 1.94E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATGAAAtgctgttttcataaaaaaTAAAATtgaagGttcat 1787637 1787828 F ydiE ydiEp1 Sigma70 1787573 1787578 TTGCTC 19 1787598 1787603 TAATAA 1787609 2.51 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence actgcTTGCTCtggtcagccataatatTGaTAATAAgaatcAttgtt 1787637 1787828 F ydiE ydiEp2 Sigma70 1787597 1787602 ATAATA 20 1787623 1787628 TATTAT 1787634 2.574 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgATAATAagaatcattgttatatcaatTATTATtaattTttatg 1787637 1787828 F ydiE ydiEp3 Sigma70 1787565 1787570 ATTACT 18 1787589 1787594 TAATAT 1787600 3.118 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaATTACTgcttgctctggtcagccaTAATATtgataAtaaga 1787637 1787828 F ydiE ydiEp5 Sigma70 1787594 1787599 TTGATA 16 1787616 1787621 TATCAA 1787627 3.563 good homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTGATAataagaatcattgttaTATCAAttattAttaat 1787637 1787828 F ydiE ydiEp6 Sigma70 1787573 1787578 TTGCTC 17 1787596 1787601 GATAAT 1787606 4.586 high homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgcTTGCTCtggtcagccataatattGATAATaagaAtcatt 1790291 1790755 R nlpC nlpCp1 Sigma70 1790848 1790853 ATGCTG 21 1790821 1790826 TAGTAT 1790815 2.063 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagaATGCTGatttcgaccatctgatttcatTAGTATcttgaAaatcg 1790291 1790755 R nlpC nlpCp2 Sigma70 1790845 1790850 CTGATT 21 1790818 1790823 TATCTT 1790813 2.323 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatgCTGATTtcgaccatctgatttcattagTATCTTgaaaAtcggg 1790291 1790755 R nlpC nlpCp5 Sigma70 1790814 1790819 TTGAAA 18 1790790 1790795 TAAATT 1790784 5.638 high homology 1.74E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatcTTGAAAatcgggtaattacgacgcTAAATTaatgcAagaat 1790833 1791582 R btuD btuDp1 Sigma70 1791620 1791625 ATCCCA 16 1791598 1791603 TAAACT 1791591 2.803 poor homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaagATCCCAttgtgatggaaagcatTAAACTggcgttGgcaaa 1803189 1803296 F yniD yniDp1 Sigma70 1803058 1803063 TTTCAT 16 1803080 1803085 GACCAT 1803090 1.893 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attttTTTCATaaaacgcagaaacagtGACCATgtgcAcaacg 1803189 1803296 F yniD yniDp2 Sigma70 1803122 1803127 ATCCCT 19 1803147 1803152 TACACT 1803158 2.19 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaaaaATCCCTtgatgcctgtccctttTGtTACACTccgttAtcacg 1803189 1803296 F yniD yniDp3 Sigma70 1803026 1803031 TTACGA 20 1803052 1803057 TATTTT 1803062 2.194 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTACGAtatatatcgatacataatttTATTTTtttcAtaaaa 1803189 1803296 F yniD yniDp4 Sigma70 1803025 1803030 TTTACG 15 1803046 1803051 TAATTT 1803057 3 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctaTTTACGatatatatcgatacaTAATTTtatttTtttca 1803349 1804107 R ydiY ydiYp1 Sigma70 1804186 1804191 TTTCCA 21 1804159 1804164 TAAGAA 1804152 2.473 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaccTTTCCAgggacgctaatctttgatcctTAAGAAagtttcCgggac 1803349 1804107 R ydiY ydiYp2 Sigma70 1804186 1804191 TTTCCA 15 1804165 1804170 GATCCT 1804159 2.61 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaccTTTCCAgggacgctaatctttGATCCTtaagaAagttt 1803349 1804107 R ydiY ydiYp3 Sigma70 1804254 1804259 ATGCTT 21 1804227 1804232 TACATT 1804221 2.653 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccacATGCTTattcaaaaaatgaaataagaaTACATTgctaaGttatt 1803349 1804107 R ydiY ydiYp4 Sigma70 1804303 1804308 TTAAAA 19 1804278 1804283 TAAATA 1804273 2.68 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTAAAAttttgcagataaatatataTAAATAaaaaTctgtt 1803349 1804107 R ydiY ydiYp5 Sigma70 1804195 1804200 TTCGTT 16 1804173 1804178 TAATCT 1804168 2.803 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tataaTTCGTTacctttccagggacgcTAATCTttgaTcctta 1803349 1804107 R ydiY ydiYp11 Sigma70 1804304 1804309 TTTAAA 18 1804280 1804285 TATAAA 1804274 4.318 high homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTTAAAattttgcagataaatataTATAAAtaaaaAtctgt 1803349 1804107 R ydiY ydiYp12 Sigma70 1804223 1804228 TTGCTA 17 1804200 1804205 TATAAT 1804194 6.726 high homology 1.44E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacaTTGCTAagttattcgcgccttttTATAATtcgttAccttt 1805424 1805714 F ydiZ ydiZp1 Sigma70 1805226 1805231 TTGGCG 19 1805251 1805256 CACACT 1805262 1.83 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgttTTGGCGtagctgcggggagtgcagcCACACTcaatcAgggaa 1805424 1805714 F ydiZ ydiZp2 Sigma70 1805363 1805368 CTGTCG 18 1805387 1805392 TATGCT 1805398 2.318 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaacCTGTCGgcaacgcgtttctccgacTATGCTcaaaaGtcatg 1805820 1806680 F yniA yniAp2 Sigma70 1805760 1805765 TTTTTA 16 1805782 1805787 TAACCT 1805792 2.583 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtgTTTTTAcaccgcattcttgcgcTAACCTtatgAtctgg 1805820 1806680 F yniA yniAp5 Sigma70 1805762 1805767 TTTACA 20 1805788 1805793 TATGAT 1805799 4.084 high homology 3.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgttTTTACAccgcattcttgcgctaacctTATGATctggcAgacaa 1808958 1810349 F ydjN ydjNp1 Sigma70 1808868 1808873 ATATAA 20 1808894 1808899 TAATCT 1808906 1.524 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tttgaATATAAgagccagctcacagttcTGtTAATCTtgcgccAacact 1808958 1810349 F ydjN ydjNp2 Sigma70 1808778 1808783 TTGCAG 20 1808804 1808809 TAAGCA 1808814 2.254 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataccTTGCAGatccagtttcatcggcttatTAAGCAtcagGttgaa 1808958 1810349 F ydjN ydjNp3 Sigma70 1808912 1808917 ATGACT 21 1808939 1808944 TAAGAT 1808950 3.503 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acactATGACTgctacgcagtgatagaaataaTAAGATcaggaGaacgg 1810353 1811156 R ydjO ydjOp1 Sigma70 1811193 1811198 TTTAAA 20 1811167 1811172 CAATAT 1811161 2.184 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagaTTTAAAtgagataataattttgttaaCAATATgaggcGggaga 1810353 1811156 R ydjO ydjOp2 Sigma70 1811192 1811197 TTAAAT 16 1811170 1811175 TAACAA 1811164 2.273 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tagatTTAAATgagataataatttTGtTAACAAtatgaGgcggg 1810353 1811156 R ydjO ydjOp5 Sigma70 1811209 1811214 TTGTAA 21 1811182 1811187 TAATAA 1811177 3.253 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTGTAAatgacttagatttaaatgagaTAATAAttttGttaac 1810353 1811156 R ydjO ydjOp7 Sigma70 1811240 1811245 TTCATC 15 1811219 1811224 TAAACT 1811212 3.57 good homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatagTTCATCctgtggcgtcgctctTAAACTtatattGtaaat 1810353 1811156 R ydjO ydjOp8 Sigma70 1811220 1811225 TTAAAC 17 1811197 1811202 TAGATT 1811191 3.586 good homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctcTTAAACttatattgtaaatgactTAGATTtaaatGagata 1810353 1811156 R ydjO ydjOp9 Sigma70 1811209 1811214 TTGTAA 19 1811184 1811189 GATAAT 1811177 4.17 high homology 4.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttataTTGTAAatgacttagatttaaaTGaGATAATaattttGttaac 1810353 1811156 R ydjO ydjOp10 Sigma70 1811309 1811314 TTTTCT 18 1811285 1811290 TAAAAT 1811279 4.258 high homology 5.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcttTTTTCTttaattgtttatttatttTAAAATggttaAgtttt 1814410 1815159 R chbG chbGp1 Sigma70 1815348 1815353 TTGCTG 21 1815321 1815326 GAGAAT 1815315 2.853 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgagaTTGCTGccagtaacgccgcacttagcgGAGAATttaacGatgtg 1814410 1815159 R chbG chbGp2 Sigma70 1815204 1815209 TTGCCG 16 1815182 1815187 TAAAAA 1815176 3.503 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaactTTGCCGactgcatcgcagagctTAAAAAagcacAttaac 1823979 1824947 R astE astEp1 Sigma70 1825108 1825113 TTTAAT 18 1825084 1825089 GATCGT 1825079 2.668 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTTAATgcgctcaatgactgggtgGATCGTtactAccgcg 1831425 1832135 F ydjX ydjXp4 Sigma70 1831370 1831375 TTTTTA 18 1831394 1831399 TATTAT 1831404 3.968 good homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTTTTAgttgtctgaccacttctcTATTATcaagTttgat 1838807 1839427 R ynjF ynjFp1 Sigma70 1839460 1839465 TTGCTC 20 1839434 1839439 TAAGGA 1839427 1.434 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgTTGCTCaatcagaaaggctttatattTAAGGAgtgcctGtgcta 1838807 1839427 R ynjF ynjFp2 Sigma70 1839460 1839465 TTGCTC 16 1839438 1839443 TATTTA 1839433 2.073 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgTTGCTCaatcagaaaggctttaTATTTAaggaGtgcct 1838807 1839427 R ynjF ynjFp3 Sigma70 1839638 1839643 TTTCAT 21 1839611 1839616 CAAACT 1839605 2.393 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgacTTTCATccggctcgactttaccaccggCAAACTcccatAatccc 1838807 1839427 R ynjF ynjFp4 Sigma70 1839463 1839468 CTGTTG 17 1839440 1839445 TATATT 1839434 2.926 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcaCTGTTGctcaatcagaaaggcttTATATTtaaggAgtgcc 1839514 1839921 F nudG nudGp1 Sigma70 1839383 1839388 ATGCAA 20 1839409 1839414 GAAGAT 1839419 1.934 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgATGCAAcaacggtttaatccggggatGAAGATggcgGtctag 1839514 1839921 F nudG nudGp2 Sigma70 1839454 1839459 CTGATT 15 1839475 1839480 TATTAT 1839485 3.75 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctttCTGATTgagcaacagtgcggaTATTATggcaTttttc 1841855 1842895 R ynjI ynjIp3 Sigma70 1842983 1842988 CTGAAA 15 1842962 1842967 GAAAAT 1842956 3.31 good homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattCTGAAAtatccagcggatcaaGAAAATtcgttGgatat 1841855 1842895 R ynjI ynjIp4 Sigma70 1842953 1842958 TTGGAT 16 1842931 1842936 TAAAAT 1842926 5.063 high homology 7.14E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgTTGGATattttttttgcatggaTAAAATtatcGcctct 1841855 1842895 R ynjI ynjIp5 Sigma70 1842940 1842945 TTGCAT 18 1842916 1842921 TAAAGT 1842910 5.378 high homology 9.45E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGCATggataaaattatcgcctcTAAAGTatgtaAtaaca 1843023 1844984 R topB topBp2 Sigma70 1845115 1845120 TTGCTG 21 1845088 1845093 GAAAAT 1845081 3.483 good homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggtTTGCTGctggcggtcatgccggaagcaGAAAATgaggtcAaagct 1846861 1848717 F sppA sppAp2 Sigma70 1846723 1846728 TTTATT 21 1846750 1846755 GATTTT 1846761 2.263 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTTATTcacaaaattaacacgagagtgGATTTTgttacAgcaca 1846861 1848717 F sppA sppAp3 Sigma70 1846705 1846710 TTAACT 20 1846731 1846736 CAAAAT 1846741 2.344 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaTTAACTcctgtcgtgatatttattcaCAAAATtaacAcgaga 1846861 1848717 F sppA sppAp4 Sigma70 1846821 1846826 TTGCGC 18 1846845 1846850 TAAGTT 1846856 2.548 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctaTTGCGCctgtgacaggtgtgacctTAAGTTgggagAataca 1846861 1848717 F sppA sppAp6 Sigma70 1846701 1846706 TTGATT 18 1846725 1846730 TATTCA 1846735 4.058 high homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccatTTGATTaactcctgtcgtgatattTATTCAcaaaAttaac 1846861 1848717 F sppA sppAp7 Sigma70 1846781 1846786 CTGACA 17 1846804 1846809 TACGAT 1846814 4.096 high homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcctgCTGACAagtaccggttgggtcatTACGATaaccAcatct 1850645 1852003 R ydjE ydjEp1 Sigma70 1852216 1852221 TTAGCT 20 1852190 1852195 CATAAT 1852184 1.864 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccagTTAGCTgattttagtcatattaattaCATAATaactgAtaaat 1850645 1852003 R ydjE ydjEp2 Sigma70 1852089 1852094 TTGTTC 19 1852064 1852069 GATGAT 1852059 2.12 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTGTTCctgcgccttgaaataaaatGATGATaaagAtgcgg 1850645 1852003 R ydjE ydjEp6 Sigma70 1852093 1852098 TTATTT 17 1852070 1852075 TAAAAT 1852065 4.546 high homology 7.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTATTTgttcctgcgccttgaaaTAAAATgatgAtaaag 1852120 1852878 R ydjF ydjFp5 Sigma70 1852955 1852960 TTCAAA 16 1852933 1852938 TAAACA 1852926 3.253 good homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTCAAAcaggttattttgaaagTAAACAtcggttAtgcga 1852120 1852878 R ydjF ydjFp6 Sigma70 1852969 1852974 ATGAAA 19 1852944 1852949 TATTTT 1852939 3.46 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtgATGAAAatctgtgattcaaacaggtTATTTTgaaaGtaaac 1852120 1852878 R ydjF ydjFp7 Sigma70 1852940 1852945 TTGAAA 17 1852917 1852922 GATAAT 1852910 6.106 high homology 2.24E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttattTTGAAAgtaaacatcggttaTGcGATAATcgcgctAatgtg 1853015 1853995 R ydjG ydjGp1 Sigma70 1854023 1854028 TTGCTG 15 1854002 1854007 TAATGA 1853996 2.34 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTGCTGgaagaatacgaaggaTAATGAaggcaAatgaa 1853015 1853995 R ydjG ydjGp3 Sigma70 1854076 1854081 TTCTAA 21 1854049 1854054 TAAAAA 1854043 2.613 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcggTTCTAAgcgtcggtgccaccaccggcgTAAAAAacagaAagctg 1859726 1859998 R yeaC yeaCp3 Sigma70 1860199 1860204 TTGTCA 16 1860177 1860182 TAGAAA 1860170 3.053 poor homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagacTTGTCAcatggaatgcagcgcaTAGAAAttcgttGcggta 1859726 1859998 R yeaC yeaCp4 Sigma70 1860199 1860204 TTGTCA 18 1860175 1860180 GAAATT 1860170 3.458 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagacTTGTCAcatggaatgcagcgcataGAAATTcgttGcggta 1860040 1860453 R msrB msrBp1 Sigma70 1860534 1860539 TTAGGA 21 1860507 1860512 TAATGT 1860500 2.013 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caagtTTAGGAcaaaattttgccagttggTGtTAATGTtttgttAgaatc 1860040 1860453 R msrB msrBp2 Sigma70 1860508 1860513 TTAATG 20 1860482 1860487 TAATGT 1860477 2.424 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtgTTAATGttttgttagaatcagtcacgTAATGTgagcAcgatt 1860040 1860453 R msrB msrBp4 Sigma70 1860606 1860611 TTTAAA 21 1860579 1860584 GATTTT 1860574 2.773 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgaatTTTAAAgggcaattacgataaaaaTGtGATTTTcatcAcgatt 1860040 1860453 R msrB msrBp6 Sigma70 1860521 1860526 TTGCCA 19 1860496 1860501 TAGAAT 1860490 4.96 high homology 1.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaattTTGCCAgttggtgttaatgtttTGtTAGAATcagtcAcgtaa 1868409 1869884 F yeaI yeaIp1 Sigma70 1868339 1868344 TTACAA 20 1868365 1868370 TAACCT 1868375 3.054 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagcTTACAAtcgctttaaatatgacagcaTAACCTttacAtaatt 1868409 1869884 F yeaI yeaIp2 Sigma70 1868349 1868354 TTTAAA 19 1868374 1868379 CATAAT 1868384 3.28 good homology 0.000128446 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTTAAAtatgacagcataacctttaCATAATttagTtccag 1868409 1869884 F yeaI yeaIp3 Sigma70 1868349 1868354 TTTAAA 17 1868372 1868377 TACATA 1868383 3.486 good homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTTAAAtatgacagcataaccttTACATAatttaGttcca 1868409 1869884 F yeaI yeaIp5 Sigma70 1868349 1868354 TTTAAA 21 1868376 1868381 TAATTT 1868388 3.703 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTTAAAtatgacagcataacctttacaTAATTTagttccAgaaaa 1870065 1871555 F yeaJ yeaJp2 Sigma70 1869912 1869917 TTGCGT 20 1869938 1869943 TACTAT 1869950 3.254 good homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGCGTggcttttgcatacaatttatTACTATtaccccTaaatt 1870065 1871555 F yeaJ yeaJp5 Sigma70 1869905 1869910 ATGCTT 17 1869928 1869933 TACAAT 1869939 4.416 high homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagccATGCTTtttgcgtggcttttgcaTACAATttattActatt 1870065 1871555 F yeaJ yeaJp6 Sigma70 1869923 1869928 TTGCAT 21 1869950 1869955 TAAATT 1869961 4.783 high homology 1.48E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcttTTGCATacaatttattactattaccccTAAATTtccccTcccca 1871598 1872101 F yeaK yeaKp1 Sigma70 1871555 1871560 ATAACC 19 1871580 1871585 TAATCT 1871591 1.64 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatgATAACCttctgtggttgtttgcttgTAATCTcaggaGcgtga 1871598 1872101 F yeaK yeaKp3 Sigma70 1871377 1871382 TTGCAG 20 1871403 1871408 GAAAAA 1871414 2.054 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTGCAGcacaactgcctgaacgtatcGAAAAAcgtctGcaaca 1871598 1872101 F yeaK yeaKp4 Sigma70 1871458 1871463 TTTACG 16 1871480 1871485 TACGTT 1871491 2.213 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtaTTTACGcgatgaaagaaaacgaTACGTTacatgAtgcgt 1871598 1872101 F yeaK yeaKp5 Sigma70 1871466 1871471 ATGAAA 15 1871487 1871492 CATGAT 1871497 2.26 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgATGAAAgaaaacgatacgttaCATGATgcgtAtaaag 1871598 1872101 F yeaK yeaKp6 Sigma70 1871377 1871382 TTGCAG 16 1871399 1871404 TATCGA 1871410 2.273 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTGCAGcacaactgcctgaacgTATCGAaaaacGtctgc 1872102 1872206 R yoaI yoaIp2 Sigma70 1872333 1872338 TTTACG 20 1872307 1872312 GAAAAT 1872302 2.644 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttacTTTACGcttgctgcaggaaggaagtaGAAAATctttAcgttt 1872102 1872206 R yoaI yoaIp3 Sigma70 1872258 1872263 CTGCCA 17 1872235 1872240 TAACGT 1872230 3.366 good homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaaaCTGCCAtttgtgcacgctaacaaTAACGTgaaaAcagct 1872779 1873600 R yeaM yeaMp2 Sigma70 1873713 1873718 TTAATG 15 1873692 1873697 TATGCT 1873687 3.29 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgcTTAATGaagttgaacaggtcaTATGCTtctcAttgtt 1872779 1873600 R yeaM yeaMp3 Sigma70 1873704 1873709 TTGAAC 21 1873677 1873682 TACAAA 1873672 3.393 good homology 0.000115067 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgaagTTGAACaggtcatatgcttctcatTGtTACAAAcgagGctgta 1872779 1873600 R yeaM yeaMp6 Sigma70 1873651 1873656 TTTATT 17 1873628 1873633 TAAAAT 1873622 5.516 high homology 2.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgttTTTATTgttatgttgaatcaagcTAAAATgacaaAttatc 1873697 1874878 F yeaN yeaNp1 Sigma70 1873568 1873573 TTCATA 21 1873595 1873600 CATCAT 1873605 1.823 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgggTTCATAgccattgagattcaacctgtgCATCATtttgTccgaa 1873697 1874878 F yeaN yeaNp2 Sigma70 1873592 1873597 GTGCAT 19 1873617 1873622 GATAAT 1873628 2.04 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacctGTGCATcattttgtccgaacttagcGATAATttgtcAtttta 1873697 1874878 F yeaN yeaNp5 Sigma70 1873631 1873636 TTAGCT 16 1873653 1873658 TAAAAA 1873664 2.473 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTAGCTtgattcaacataacaaTAAAAAcggtaAggtac 1873697 1874878 F yeaN yeaNp7 Sigma70 1873623 1873628 TTGTCA 18 1873647 1873652 TAACAA 1873658 3.018 poor homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTGTCAttttagcttgattcaacaTAACAAtaaaaAcggta 1873697 1874878 F yeaN yeaNp8 Sigma70 1873507 1873512 TTAACT 18 1873531 1873536 TACAAA 1873542 3.278 good homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actggTTAACTcatccgttccggcgtgaaTACAAAatgcgAccgcg 1873697 1874878 F yeaN yeaNp9 Sigma70 1873636 1873641 TTGATT 20 1873662 1873667 TAAGGT 1873672 3.834 good homology 3.68E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagcTTGATTcaacataacaataaaaacggTAAGGTacagCctcgt 1874933 1875280 F yeaO yeaOp3 Sigma70 1874811 1874816 TTGCCA 19 1874836 1874841 GATTTT 1874846 3.31 good homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtgTTGCCAtactttcactactgatggcGATTTTcggaCtttgc 1875302 1875556 R yoaF yoaFp1 Sigma70 1875696 1875701 TTTAAT 19 1875671 1875676 CATCAT 1875665 2.02 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTTAATctttgcaggcatgataaaaCATCATcaacaAagatg 1875302 1875556 R yoaF yoaFp5 Sigma70 1875667 1875672 ATCAAC 17 1875644 1875649 TAATAT 1875638 2.916 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatcATCAACaaagatgaaacaagacgTAATATgttttGagtga 1875302 1875556 R yoaF yoaFp6 Sigma70 1875610 1875615 CTGCAA 16 1875588 1875593 GATACT 1875583 2.933 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtgCTGCAAaacaaaacgataccgcGATACTctaaTcttgg 1875302 1875556 R yoaF yoaFp7 Sigma70 1875610 1875615 CTGCAA 18 1875586 1875591 TACTCT 1875579 3.348 good homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtgCTGCAAaacaaaacgataccgcgaTACTCTaatcttGgataa 1875302 1875556 R yoaF yoaFp10 Sigma70 1875777 1875782 TTGGCA 20 1875751 1875756 GATAAT 1875746 3.924 good homology 3.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttctTTGGCAagggattgcgagacgcgggcGATAATctgaTctgac 1875739 1876764 F yeaP yeaPp1 Sigma70 1875560 1875565 TTGATC 21 1875587 1875592 GAGTAT 1875597 2.423 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTGATCtcacatatttatccaagattaGAGTATcgcgGtatcg 1875739 1876764 F yeaP yeaPp2 Sigma70 1875604 1875609 TTTGTT 18 1875628 1875633 TACATT 1875639 2.988 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgtTTTGTTttgcagcactatttttatTACATTcactcAaaaca 1875739 1876764 F yeaP yeaPp3 Sigma70 1875654 1875659 TTGTTT 20 1875680 1875685 TATCAT 1875690 3.564 good homology 8.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtcTTGTTTcatctttgttgatgatgtttTATCATgcctGcaaag 1875739 1876764 F yeaP yeaPp4 Sigma70 1875697 1875702 TTAAAT 19 1875722 1875727 TATCCT 1875734 3.69 good homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaTTAAATaatcagcatttacccgccgTATCCTggagttGttccg 1877427 1877609 R yoaG yoaGp1 Sigma70 1877832 1877837 ATGCAT 21 1877805 1877810 TACGCT 1877799 2.743 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgttATGCATggggcggtcaaatatctcggcTACGCTgatgaAcacag 1878145 1878783 R leuE leuEp1 Sigma70 1878854 1878859 TTTCTA 20 1878828 1878833 CATATT 1878821 1.634 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctccTTTCTAagccgctacagattggttagCATATTcaccttTaatcg 1878145 1878783 R leuE leuEp2 Sigma70 1878897 1878902 TTCAAT 19 1878872 1878877 TAAAAC 1878867 1.88 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTCAATtatcgggttgatatcaggtTAAAACctgaTtttct 1878145 1878783 R leuE leuEp3 Sigma70 1878854 1878859 TTTCTA 17 1878831 1878836 TAGCAT 1878826 3.736 good homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctccTTTCTAagccgctacagattggtTAGCATattcAccttt 1878145 1878783 R leuE leuEp4 Sigma70 1878818 1878823 TTTAAT 15 1878797 1878802 GATAAT 1878791 4.06 high homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccTTTAATcgcgcatgatcgaaaGATAATtaaagAggtta 1878910 1879833 R dmlR dmlRp1 Sigma70 1879931 1879936 TTGGGT 17 1879908 1879913 CAAAAT 1879902 3.036 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaTTGGGTtctcacttcctgaccatCAAAATtgacaAcatca 1878910 1879833 R dmlR dmlRp3 Sigma70 1879910 1879915 ATCAAA 19 1879885 1879890 TATAAT 1879879 3.62 good homology 3.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaccATCAAAattgacaacatcaccatccTATAATtgactGaaaag 1879936 1881021 F dmlA dmlAp1 Sigma70 1879867 1879872 TTAATT 19 1879892 1879897 GATGGT 1879904 2.05 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaTTAATTccttttcagtcaattatagGATGGTgatgttGtcaat 1879936 1881021 F dmlA dmlAp2 Sigma70 1879867 1879872 TTAATT 16 1879889 1879894 TAGGAT 1879899 2.963 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaTTAATTccttttcagtcaattaTAGGATggtgAtgttg 1881212 1882657 F yeaV yeaVp1 Sigma70 1881146 1881151 TTAATT 19 1881171 1881176 CAAATT 1881182 1.59 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTAATTgtttaatttatgtaacatgCAAATTttgttAcgcgt 1881212 1882657 F yeaV yeaVp2 Sigma70 1881130 1881135 ATGGCT 19 1881155 1881160 TAATTT 1881166 2.11 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttATGGCTttccgtattcttaattgttTAATTTatgtaAcatgc 1881212 1882657 F yeaV yeaVp3 Sigma70 1881143 1881148 TTCTTA 15 1881164 1881169 TAACAT 1881174 2.77 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtaTTCTTAattgtttaatttatgTAACATgcaaAttttg 1881212 1882657 F yeaV yeaVp4 Sigma70 1881119 1881124 TTTCGT 16 1881141 1881146 TATTCT 1881152 3.003 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccgTTTCGTgttttatggctttccgTATTCTtaattGtttaa 1881212 1882657 F yeaV yeaVp5 Sigma70 1881064 1881069 TTTATT 16 1881086 1881091 TAACCT 1881097 3.253 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTTATTcgttctttgcagtaaaTAACCTgcgtcAtttca 1883869 1884834 F yeaX yeaXp1 Sigma70 1883802 1883807 TTTAAG 21 1883829 1883834 TATTTT 1883840 3.233 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtgTTTAAGgactaatgacatcggcggcggTATTTTccgccGctggg 1889349 1891259 R yoaA yoaAp1 Sigma70 1891366 1891371 TTCCAT 20 1891340 1891345 CACAAT 1891334 1.704 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatacTTCCATtttcgtgctgcaaagacTGcCACAATgtgagGtcgcc 1891391 1891735 F yoaB yoaBp1 Sigma70 1891353 1891358 TTGCAG 16 1891375 1891380 TAATGA 1891386 2.483 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtctTTGCAGcacgaaaatggaagtaTAATGAggacaAaatga 1891391 1891735 F yoaB yoaBp4 Sigma70 1891352 1891357 TTTGCA 15 1891373 1891378 TATAAT 1891383 4.63 high homology 1.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtcTTTGCAgcacgaaaatggaagTATAATgaggAcaaaa 1892157 1892456 F yoaC yoaCp2 Sigma70 1892104 1892109 TTAAGG 19 1892129 1892134 TAACAT 1892140 1.98 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTAAGGtcatatatagccttatcgaTAACATggttaAtttta 1892157 1892456 F yoaC yoaCp3 Sigma70 1892093 1892098 TTAGAT 18 1892117 1892122 TAGCCT 1892128 2.458 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTAGATgcaaattaaggtcatataTAGCCTtatcgAtaaca 1892157 1892456 F yoaC yoaCp4 Sigma70 1891967 1891972 TTATAG 16 1891989 1891994 TAAATT 1892000 2.503 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTATAGcgtgcggactgaccgtTAAATTtctccAtctta 1892157 1892456 F yoaC yoaCp6 Sigma70 1892087 1892092 TTGATA 20 1892113 1892118 TATATA 1892124 3.514 good homology 4.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccctTTGATAttagatgcaaattaaggtcaTATATAgccttAtcgat 1892576 1892755 R yoaH yoaHp3 Sigma70 1892818 1892823 CTGACT 19 1892793 1892798 TAGCAT 1892787 2.32 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtcCTGACTctactggctatgtgccgggTAGCATgaaatAattag 1892576 1892755 R yoaH yoaHp4 Sigma70 1892880 1892885 TTCAGC 18 1892856 1892861 TAAAGT 1892851 2.698 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTCAGCggcgtcctgacgccagagTAAAGTaatcAcagcg 1892829 1894190 F pabB pabBp1 Sigma70 1892758 1892763 TTAACT 19 1892783 1892788 TAATTA 1892793 1.84 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattgTTAACTcctgctaaattgttggcgcTAATTAtttcAtgcta 1892829 1894190 F pabB pabBp2 Sigma70 1892789 1892794 TTTCAT 20 1892815 1892820 TAGAGT 1892825 3.024 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTTCATgctacccggcacatagccagTAGAGTcaggActgat 1892829 1894190 F pabB pabBp4 Sigma70 1892746 1892751 CTGCAA 17 1892769 1892774 TAAATT 1892779 4.286 high homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence taaacCTGCAAacattgttaactccTGcTAAATTgttgGcgcta 1902825 1903283 F yobD yobDp2 Sigma70 1902756 1902761 CTGCTG 17 1902779 1902784 TACACT 1902790 3.446 good homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggcCTGCTGggactgtaagactgttgTACACTaccggGgcctt 1903712 1904278 F yebN yebNp1 Sigma70 1903566 1903571 CTGAAT 21 1903593 1903598 TATGCA 1903604 2.073 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggaCTGAATactttcagtcaggcgagaccaTATGCAcatcaAtcgct 1903712 1904278 F yebN yebNp3 Sigma70 1903662 1903667 TTGCTG 17 1903685 1903690 TATGGA 1903697 3.206 good homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgtTTGCTGggggcgatgatgtgtttTATGGAtaccccGgtcag 1904275 1905084 R rlmA rlmAp1 Sigma70 1905122 1905127 TTCGCG 19 1905097 1905102 TATCCT 1905091 2.2 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgaTTCGCGttacacttgcggcctttagTATCCTgccggAgttgt 1904275 1905084 R rlmA rlmAp2 Sigma70 1905223 1905228 GTGAAT 15 1905202 1905207 TATAAA 1905196 2.39 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaagtGTGAATacgcttcaatctcgcTATAAAgcctcGtcgaa 1904275 1905084 R rlmA rlmAp9 Sigma70 1905137 1905142 TTGCCC 16 1905115 1905120 TACACT 1905110 4.173 high homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTGCCCgccgcgtgattcgcgtTACACTtgcgGccttt 1905250 1905459 R cspC cspCp1 Sigma70 1905648 1905653 ATAACA 19 1905623 1905628 TACAGT 1905618 2.41 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtgATAACAgatttcgggttaaacgaggTACAGTtctgTttatg 1905250 1905459 R cspC cspCp2 Sigma70 1905600 1905605 TTTTCA 16 1905578 1905583 TAAACA 1905572 2.473 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTTTCAgtaaagaagtcctgagTAAACAcgttgAcgttg 1905250 1905459 R cspC cspCp3 Sigma70 1905524 1905529 ATGCAG 18 1905500 1905505 TATGTT 1905493 2.608 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctcATGCAGtaatgtgtcagttttatcTATGTTatgcctGcgggc 1905250 1905459 R cspC cspCp4 Sigma70 1905539 1905544 TTATAT 15 1905518 1905523 TAATGT 1905513 2.91 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagccTTATATtggtgcctcatgcagTAATGTgtcaGtttta 1905250 1905459 R cspC cspCp7 Sigma70 1905684 1905689 TTTAAA 16 1905662 1905667 TAACGT 1905656 3.403 good homology 0.000118571 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatgTTTAAAaatggcttgccataatTAACGTtgtatGtgata 1905250 1905459 R cspC cspCp8 Sigma70 1905564 1905569 TTGAAT 20 1905538 1905543 TATATT 1905533 5.014 high homology 2.87E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacgTTGAATaccgcttctctgccgagcctTATATTggtgCctcat 1906285 1906572 R yebO yebOp2 Sigma70 1906716 1906721 TTCAAC 19 1906691 1906696 TACAAT 1906685 3.5 good homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtaTTCAACatgatgtgcgatcaggatgTACAATttttcAgcgga 1906285 1906572 R yebO yebOp4 Sigma70 1906619 1906624 TTTCTT 15 1906598 1906603 TAGAAT 1906593 3.76 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tagatTTTCTTcctctccagcagTGgTAGAATagcgCctcta 1906285 1906572 R yebO yebOp5 Sigma70 1906664 1906669 TTAACC 17 1906641 1906646 TATCAT 1906634 4.146 high homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgccaTTAACCagtttatcccgtggTGaTATCATtttttcAgcact 1906949 1907188 F yobH yobHp1 Sigma70 1906803 1906808 TTCACC 18 1906827 1906832 TAGCAT 1906838 2.538 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccgtTTCACCtaccttatgtcattaaacTAGCATgcgttAgttaa 1906949 1907188 F yobH yobHp3 Sigma70 1906786 1906791 TTCACT 17 1906809 1906814 TACCTT 1906820 3.346 good homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTCACTccaatctccgtttcaccTACCTTatgtcAttaaa 1906949 1907188 F yobH yobHp4 Sigma70 1906891 1906896 TTGCTT 16 1906913 1906918 TACGAT 1906924 4.043 high homology 4.73E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTGCTTcagcgcatattgccgcTACGATtaagcGaacat 1906949 1907188 F yobH yobHp7 Sigma70 1906906 1906911 TTGCCG 17 1906929 1906934 TAAAAA 1906940 4.506 high homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcataTTGCCGctacgattaagcgaacaTAAAAAgagaaGaggtt 1907332 1908123 R kdgR kdgRp2 Sigma70 1908171 1908176 TTATAA 20 1908145 1908150 TATAAA 1908138 2.634 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaaaTTATAAtaaaaaacagttctgattttTATAAAacactcGcaatg 1907332 1908123 R kdgR kdgRp3 Sigma70 1908193 1908198 TTGCGA 19 1908168 1908173 TAATAA 1908162 2.68 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggaTTGCGAccaccctggtgcgaaattaTAATAAaaaacAgttct 1907332 1908123 R kdgR kdgRp5 Sigma70 1908279 1908284 TTGGTG 18 1908255 1908260 GATTCT 1908248 2.908 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctTTGGTGaataatcaacaggggtatGATTCTagcactGatatt 1907332 1908123 R kdgR kdgRp7 Sigma70 1908279 1908284 TTGGTG 15 1908258 1908263 TATGAT 1908253 3.84 good homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctTTGGTGaataatcaacaggggTATGATtctaGcactg 1907332 1908123 R kdgR kdgRp9 Sigma70 1908193 1908198 TTGCGA 17 1908170 1908175 TATAAT 1908164 5.976 high homology 6.14E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggaTTGCGAccaccctggtgcgaaatTATAATaaaaaAcagtt 1908300 1909673 F yebQ yebQp1 Sigma70 1908198 1908203 ATCCAT 15 1908219 1908224 TACAAT 1908230 2.71 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaATCCATcttttgccggttagtTACAATtctgcGacatc 1908300 1909673 F yebQ yebQp2 Sigma70 1908218 1908223 TTACAA 18 1908242 1908247 GAATAT 1908252 3.248 good homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttagTTACAAttctgcgacatccaccgtGAATATcagtGctaga 1908300 1909673 F yebQ yebQp4 Sigma70 1908145 1908150 TTTATA 18 1908169 1908174 TATTAT 1908181 4.838 high homology 3.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgtTTTATAaaaatcagaactgtttttTATTATaatttcGcacca 1908300 1909673 F yebQ yebQp5 Sigma70 1908145 1908150 TTTATA 21 1908172 1908177 TATAAT 1908183 5.033 high homology 6.02E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgtTTTATAaaaatcagaactgttttttatTATAATttcgcAccagg 1913655 1914152 R yebR yebRp1 Sigma70 1914273 1914278 GTGCCA 20 1914247 1914252 TAATCT 1914240 2.064 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgacGTGCCAaatgtaataagaattaacatTAATCTtaacccAtgatg 1913655 1914152 R yebR yebRp2 Sigma70 1914213 1914218 TTAACG 19 1914188 1914193 TAGGCT 1914182 2.36 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaTTAACGcatttaatgcttattttaaTAGGCTggcagAtccag 1913655 1914152 R yebR yebRp3 Sigma70 1914278 1914283 ATGACG 19 1914253 1914258 TAACAT 1914246 2.61 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagccATGACGtgccaaatgtaataagaatTAACATtaatctTaaccc 1913655 1914152 R yebR yebRp4 Sigma70 1914220 1914225 TTGAGC 18 1914196 1914201 TATTTT 1914190 3.388 good homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatcTTGAGCattaacgcatttaatgctTATTTTaatagGctggc 1914282 1915565 F yebS yebSp1 Sigma70 1914218 1914223 ATGCTC 21 1914245 1914250 TAAGAT 1914255 2.273 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaATGCTCaagatcattcccatcatgggtTAAGATtaatGttaat 1914282 1915565 F yebS yebSp2 Sigma70 1914089 1914094 TTTCTC 15 1914110 1914115 TAAAGT 1914120 3.11 poor homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actggTTTCTCccgccatcagcgcgtTAAAGTcgcgAtttaa 1914282 1915565 F yebS yebSp4 Sigma70 1914244 1914249 TTAAGA 17 1914267 1914272 TACATT 1914277 3.716 good homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgggTTAAGAttaatgttaattcttatTACATTtggcAcgtca 1914282 1915565 F yebS yebSp5 Sigma70 1914109 1914114 TTAAAG 18 1914133 1914138 TAAAAT 1914143 4.558 high homology 3.50E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcgTTAAAGtcgcgatttaaatccgcgTAAAATtctgTtttgt 1914282 1915565 F yebS yebSp6 Sigma70 1914168 1914173 TTGTCT 21 1914195 1914200 TAAAAT 1914205 4.903 high homology 1.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttggTTGTCTtacctggatctgccagcctatTAAAATaagcAttaaa 1918247 1919686 F rsmF rsmFp1 Sigma70 1918184 1918189 GTGCCT 18 1918208 1918213 TAAACT 1918218 3.128 poor homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccggcGTGCCTgcgccggagcgtttaTGcTAAACTgcgcGcctgt 1919804 1920040 F yebV yebVp6 Sigma70 1919711 1919716 TTGACT 21 1919738 1919743 TAGGCT 1919749 4.123 high homology 2.67E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTGACTggcacattcggctgcctcaacTAGGCTgaaaaAtggtg 1920145 1920336 F yebW yebWp1 Sigma70 1920082 1920087 TTATTC 20 1920108 1920113 TAAACT 1920119 2.294 poor homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggTTATTCccccgttgtaaaatctctccTAAACTtaacgGtacgg 1920145 1920336 F yebW yebWp6 Sigma70 1920073 1920078 TTGTCC 17 1920096 1920101 TAAAAT 1920108 5.156 high homology 3.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttatTTGTCCtggttattcccccgttgTAAAATctctccTaaact 1921389 1921730 R yebY yebYp4 Sigma70 1921929 1921934 TTGCTC 20 1921903 1921908 TATGGT 1921898 3.114 poor homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttaTTGCTCaaagccatcctggtgatgatTATGGTggtcAttgcg 1921389 1921730 R yebY yebYp5 Sigma70 1921868 1921873 TTGTAC 17 1921845 1921850 GAAGAT 1921839 3.206 good homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttcTTGTACcgcgcatgaggcaggatGAAGATcgtgcGgcacc 1921389 1921730 R yebY yebYp7 Sigma70 1921929 1921934 TTGCTC 17 1921906 1921911 GATTAT 1921901 4.026 high homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttaTTGCTCaaagccatcctggtgatGATTATggtgGtcatt 1923132 1923362 F holE holEp2 Sigma70 1923038 1923043 TTGTCT 15 1923059 1923064 GATCAT 1923071 3.05 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaccTTGTCTaatgtctgagtcgagGATCATcaattcCggctt 1923132 1923362 F holE holEp4 Sigma70 1923022 1923027 TTTACA 15 1923043 1923048 TAATGT 1923053 3.99 good homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTTACAgagcataaccttgtcTAATGTctgaGtcgag 1923132 1923362 F holE holEp5 Sigma70 1923009 1923014 TTGTAA 18 1923033 1923038 TAACCT 1923044 4.298 high homology 6.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctttTTGTAAtaacttttttacagagcaTAACCTtgtctAatgtc 1923132 1923362 F holE holEp6 Sigma70 1923075 1923080 TTGCCA 17 1923098 1923103 TAACTT 1923110 4.806 high homology 4.68E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggcTTGCCAtcctggctcactcttagTAACTTttgcccGcgaat 1923464 1924120 F yobB yobBp2 Sigma70 1923376 1923381 TTACAC 19 1923401 1923406 TAAATT 1923411 2.86 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cagagTTACACtttcttacataacgccTGcTAAATTatgaGtattt 1923464 1924120 F yobB yobBp3 Sigma70 1923386 1923391 TTACAT 17 1923409 1923414 GAGTAT 1923420 3.026 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttcTTACATaacgcctgctaaattatGAGTATtttctAaaccg 1923464 1924120 F yobB yobBp4 Sigma70 1923386 1923391 TTACAT 20 1923412 1923417 TATTTT 1923422 3.054 poor homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttcTTACATaacgcctgctaaattatgagTATTTTctaaAccgca 1923464 1924120 F yobB yobBp5 Sigma70 1923355 1923360 TTAAAT 16 1923377 1923382 TACACT 1923388 4.163 high homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaacTTAAATaaaacttatacagagtTACACTttcttAcataa 1928905 1930083 F purT purTp1 Sigma70 1928781 1928786 CTCATA 20 1928807 1928812 TATATT 1928819 2.044 poor homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcctCTCATAataactgtgattttatacagTATATTtcttttCggttg 1928905 1930083 F purT purTp3 Sigma70 1928842 1928847 ATAAAG 21 1928869 1928874 TATACT 1928879 2.823 poor homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaATAAAGacacacgcaaacgttttcgttTATACTgcgcGcggaa 1928905 1930083 F purT purTp4 Sigma70 1928822 1928827 TTGAGA 15 1928843 1928848 TAAAGA 1928854 3.2 good homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcggTTGAGAaatcaacatcagcaaTAAAGAcacacGcaaac 1928905 1930083 F purT purTp6 Sigma70 1928772 1928777 TTGCAG 17 1928795 1928800 GATTTT 1928806 3.706 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gccatTTGCAGcctctcataataacTGtGATTTTatacaGtatat 1934676 1935545 F yebK yebKp1 Sigma70 1934511 1934516 TTTCCA 20 1934537 1934542 GATCAT 1934548 2.334 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgtTTTCCAttgggtaaaaatctgacactGATCATgttatGaaaaa 1934676 1935545 F yebK yebKp2 Sigma70 1934578 1934583 TTGTCA 19 1934603 1934608 TAATAT 1934614 4.45 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcttTTGTCAttaacacggcacacaggcgTAATATctgacAaaact 1937246 1938217 R lpxM lpxMp1 Sigma70 1938357 1938362 TTGTGC 21 1938330 1938335 TAACAT 1938323 2.153 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagaTTGTGCcgcagctacggtttgattaatTAACATccattcGcagcc 1937246 1938217 R lpxM lpxMp3 Sigma70 1938283 1938288 TTGGTG 18 1938259 1938264 TACACT 1938252 4.038 high homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTGGTGcggggcaagttgcgccgcTACACTatcaccAgattg 1938337 1939659 R yebA yebAp4 Sigma70 1939771 1939776 TTGGAT 17 1939748 1939753 CAAACT 1939742 3.896 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacgTTGGATcccctggggacgaatatCAAACTgggtaAaacaa 1942370 1943380 R ruvB ruvBp3 Sigma70 1943505 1943510 TTGCCG 17 1943482 1943487 TATAAA 1943476 4.796 high homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcggTTGCCGcgctggtggcgctgggcTATAAAccacaAgaagc 1948856 1949422 F yecD yecDp1 Sigma70 1948632 1948637 ATGAAA 19 1948657 1948662 GAAATT 1948668 2.51 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaATGAAAaaaggcggctattatactgGAAATTctgccGcaccg 1948856 1949422 F yecD yecDp2 Sigma70 1948711 1948716 TTTATA 15 1948732 1948737 GACTCT 1948743 2.54 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTTATAtcgggcctgaaatcaGACTCTacgccAgtttg 1948856 1949422 F yecD yecDp6 Sigma70 1948760 1948765 TTGCCC 17 1948783 1948788 CAAAAT 1948794 3.766 good homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtgTTGCCCgaactcataaaaattaaCAAAATttgtcGttccg 1948856 1949422 F yecD yecDp7 Sigma70 1948746 1948751 TTGCTA 21 1948773 1948778 TAAAAA 1948784 4.073 high homology 4.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagtTTGCTAtaaaggtgttgcccgaactcaTAAAAAttaacAaaatt 1948856 1949422 F yecD yecDp8 Sigma70 1948628 1948633 CTGAAT 16 1948650 1948655 TATACT 1948660 4.243 high homology 2.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacaaCTGAATgaaaaaaggcggctatTATACTggaaAttctg 1950290 1950685 F yecN yecNp1 Sigma70 1950131 1950136 TTGCCC 15 1950152 1950157 TACATA 1950162 2.36 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agacaTTGCCCaggcaccggaacTGgTACATAccctGtggga 1950290 1950685 F yecN yecNp3 Sigma70 1950131 1950136 TTGCCC 19 1950156 1950161 TACCCT 1950167 3.05 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacaTTGCCCaggcaccggaactggtacaTACCCTgtgggAagact 1950290 1950685 F yecN yecNp5 Sigma70 1950225 1950230 TTCTCT 17 1950248 1950253 TATCAT 1950259 3.916 good homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatcTTCTCTtttctgaatttgccaccTATCATagacaGgtgcc 1952602 1955031 R torZ torZp1 Sigma70 1955207 1955212 TTGTCA 16 1955185 1955190 GACCAT 1955178 2.433 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctggTTGTCAtgcccctattgccgccGACCATtacaccGtcaat 1956544 1957290 R cutC cutCp1 Sigma70 1957349 1957354 TTTCAT 17 1957326 1957331 GATCGT 1957320 2.986 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaagTTTCATccgtggtccattgaagaGATCGTtgccaGcgagc 1956544 1957290 R cutC cutCp2 Sigma70 1957321 1957326 TTGCCA 18 1957297 1957302 TAAGGA 1957291 3.288 good homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgTTGCCAgcgagcagtcggcgtaatTAAGGAgtaaaAatggc 1957304 1957870 R yecM yecMp2 Sigma70 1958034 1958039 TTAAAG 15 1958013 1958018 TATACT 1958008 4.41 high homology 2.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accagTTAAAGaaattagggcgggagTATACTgcaaAtggct 1957304 1957870 R yecM yecMp3 Sigma70 1957924 1957929 TTGGTT 17 1957901 1957906 TAAATT 1957896 4.966 high homology 7.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcggTTGGTTggcacagggcaacagggTAAATTaacgCtttta 1958086 1959819 F argS argSp4 Sigma70 1957989 1957994 TTGCTG 20 1958015 1958020 TATACT 1958025 4.434 high homology 1.09E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgTTGCTGacgaaaacagccatttgcagTATACTcccgCcctaa 1959996 1960484 F yecT yecTp1 Sigma70 1959870 1959875 TTTATT 18 1959894 1959899 GAAAAT 1959904 3.688 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTTATTgccatctaaatgtattctGAAAATggacAtgcca 1959996 1960484 F yecT yecTp3 Sigma70 1959924 1959929 TTGGAT 15 1959945 1959950 TAATAT 1959955 4.67 high homology 2.65E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgTTGGATaagaggccagaagcgTAATATccggCcccag 1960604 1960996 R flhE flhEp1 Sigma70 1961125 1961130 TTGGTG 16 1961103 1961108 CATTAT 1961096 1.973 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgTTGGTGaaccacgcgctgcgacCATTATtgtctcGcttcc 1960604 1960996 R flhE flhEp3 Sigma70 1961125 1961130 TTGGTG 19 1961100 1961105 TATTGT 1961095 3.32 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgTTGGTGaaccacgcgctgcgaccatTATTGTctcgCttcct 1960604 1960996 R flhE flhEp4 Sigma70 1961074 1961079 TTGCCG 17 1961051 1961056 GAATCT 1961044 3.916 good homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagcTTGCCGcagttagtggtcctgtcGAATCTggaactGtctga 1964417 1965061 R cheZ cheZp1 Sigma70 1965299 1965304 TTGTTA 19 1965274 1965279 CAATAT 1965268 2.27 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTGTTAtctccgactggaacatgccCAATATggatgGcctgg 1970860 1971363 R cheW cheWp1 Sigma70 1971524 1971529 TTAAAA 19 1971499 1971504 CAAAGT 1971493 2.34 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggTTAAAAaccttgaaagtaactatcgCAAAGTccccgGcattt 1970860 1971363 R cheW cheWp2 Sigma70 1971440 1971445 TTGATG 16 1971418 1971423 GATAAA 1971412 2.643 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgTTGATGtctccgccttgcaggcGATAAAccgcgAacaac 1970860 1971363 R cheW cheWp3 Sigma70 1971549 1971554 TTAATT 20 1971523 1971528 TAAAAA 1971517 2.704 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcaaTTAATTggtcaacaccaggttgtggtTAAAAAccttgAaagta 1975290 1975868 R flhC flhCp1 Sigma70 1976025 1976030 TTGTCA 21 1975998 1976003 GACGAT 1975992 2.703 poor homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTGTCActtccgttttgacagccaccaGACGATtactcAgttga 1975290 1975868 R flhC flhCp2 Sigma70 1975985 1975990 TTGACG 15 1975964 1975969 GACGAT 1975958 2.95 poor homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcagTTGACGcaagattcccgcgttGACGATctccaGcaaat 1976542 1977045 R insB insBp2 Sigma70 1977094 1977099 TTCTCA 15 1977073 1977078 GAAAAT 1977067 2.83 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTCTCAacccggtacgcaccaGAAAATcattgAtatgg 1976542 1977045 R insB insBp3 Sigma70 1977282 1977287 CTGCCA 16 1977260 1977265 TATGAT 1977255 3.453 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgCTGCCAacttactgatttagtgTATGATggtgTttttg 1977777 1978205 F uspC uspCp1 Sigma70 1977738 1977743 TTTAAT 20 1977764 1977769 TAAGGA 1977774 1.744 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcTTTAATgtcacctgaagttcacagaaTAAGGAacagGttatg 1977777 1978205 F uspC uspCp2 Sigma70 1977585 1977590 ATGCGG 21 1977612 1977617 TATAAT 1977622 2.793 poor homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaATGCGGagaatcagtacactattttctTATAATtacaTttgaa 1977777 1978205 F uspC uspCp3 Sigma70 1977717 1977722 TTTCTC 17 1977740 1977745 TAATGT 1977751 3.396 good homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtcgTTTCTCcattaggagtaaagcttTAATGTcacctGaagtt 1977777 1978205 F uspC uspCp4 Sigma70 1977654 1977659 TTAATT 20 1977680 1977685 TAATAT 1977692 3.534 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgaTTAATTatctttactaataatcagacTAATATttacctGtttga 1977777 1978205 F uspC uspCp5 Sigma70 1977650 1977655 TTGATT 15 1977671 1977676 TAATCA 1977682 3.54 good homology 7.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgaTTGATTaattatctttactaaTAATCAgactaAtattt 1977777 1978205 F uspC uspCp6 Sigma70 1977607 1977612 TTTCTT 19 1977632 1977637 TATGAT 1977643 3.63 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actatTTTCTTataattacatttgaaattaTATGATcaccgGgagtg 1977777 1978205 F uspC uspCp7 Sigma70 1977542 1977547 TTAATG 18 1977566 1977571 TATATT 1977576 3.748 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaacTTAATGttaatgaaatgttttacaTATATTaaccActtgt 1977777 1978205 F uspC uspCp8 Sigma70 1977578 1977583 TTGTTT 15 1977599 1977604 TACACT 1977610 4.26 high homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTGTTTaatgcggagaatcagTACACTattttCttata 1977777 1978205 F uspC uspCp9 Sigma70 1977581 1977586 TTTAAT 17 1977604 1977609 TATTTT 1977615 4.766 high homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttgTTTAATgcggagaatcagtacacTATTTTcttatAattac 1980578 1981564 R araH araHp1 Sigma70 1981695 1981700 TTGCCG 20 1981669 1981674 GAAGGT 1981662 1.984 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTGCCGaccggattgtggtgatgcggGAAGGTgaaatcGccggt 1980578 1981564 R araH araHp2 Sigma70 1981800 1981805 TTGATG 20 1981774 1981779 TATAAC 1981769 2.234 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTGATGttggcgctaagcacgaaataTATAACgtaaTttatg 1980578 1981564 R araH araHp3 Sigma70 1981794 1981799 TTGGCG 16 1981772 1981777 TAACGT 1981766 2.803 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTGGCGctaagcacgaaatataTAACGTaatttAtgcgc 1980578 1981564 R araH araHp5 Sigma70 1981794 1981799 TTGGCG 21 1981767 1981772 TAATTT 1981762 3.103 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTGGCGctaagcacgaaatatataacgTAATTTatgcGctggc 1980578 1981564 R araH araHp8 Sigma70 1981800 1981805 TTGATG 18 1981776 1981781 TATATA 1981770 3.468 good homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTGATGttggcgctaagcacgaaaTATATAacgtaAtttat 1985531 1985782 R yecJ yecJp1 Sigma70 1985978 1985983 ATGAAA 20 1985952 1985957 TATGTT 1985946 2.944 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcgATGAAActgcgcaaaatcctgaaaagTATGTTcaataActatt 1985531 1985782 R yecJ yecJp3 Sigma70 1985927 1985932 TTCAAA 17 1985904 1985909 TATGTT 1985898 4.526 high homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacgTTCAAAgacgtaccgccaggcaaTATGTTccgatAacaaa 1987275 1987514 R yecH yecHp2 Sigma70 1987555 1987560 TTCATA 17 1987532 1987537 TAGGCT 1987525 3.886 good homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtcTTCATAagcggcaatcgctacgcTAGGCTttttttGaggag 1987275 1987514 R yecH yecHp3 Sigma70 1987618 1987623 TTACAT 18 1987594 1987599 TACAAT 1987588 4.468 high homology 5.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgacgTTACATatggtgtaaatataaatgTACAATaaaaaGcattc 1988978 1989643 R yecA yecAp1 Sigma70 1989762 1989767 CTGCAA 19 1989737 1989742 TAATTT 1989730 2.66 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgcCTGCAActtgtcgttacaccctcctTAATTTttaatcAccagc 1989839 1989925 R leuZ leuZp1 Sigma70 1990008 1990013 TTGGCG 15 1989987 1989992 TATGTA 1989982 1.89 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTGGCGcgttaacaaagcggtTATGTAgcggAttgca 1989839 1989925 R leuZ leuZp2 Sigma70 1990026 1990031 CTGAAA 21 1989999 1990004 TAACAA 1989994 1.943 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggCTGAAAggcctgaagaatttggcgcgtTAACAAagcgGttatg 1989839 1989925 R leuZ leuZp3 Sigma70 1990105 1990110 TTGCCA 19 1990080 1990085 GAGTCT 1990074 2.98 poor homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaccTTGCCAaggtcggggtcgcgagttcGAGTCTcgtttCccgct 1994134 1994856 R sdiA sdiAp1 Sigma70 1994910 1994915 GTGATA 21 1994883 1994888 GATACT 1994876 2.103 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatGTGATAgtttgaattatcattataaatGATACTcactctCagggg 1994134 1994856 R sdiA sdiAp3 Sigma70 1994918 1994923 TTATTT 16 1994896 1994901 TATCAT 1994890 2.773 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTATTTatgtgatagtttgaatTATCATtataaAtgata 1994134 1994856 R sdiA sdiAp4 Sigma70 1994915 1994920 TTTATG 19 1994890 1994895 TATAAA 1994885 2.79 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttaTTTATGtgatagtttgaattatcatTATAAAtgatActcac 1994134 1994856 R sdiA sdiAp6 Sigma70 1994902 1994907 TTGAAT 15 1994881 1994886 TACTCA 1994875 3.5 good homology 3.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atagtTTGAATtatcattataaaTGaTACTCActctcAggggc 1994134 1994856 R sdiA sdiAp7 Sigma70 1994949 1994954 TTGCCT 15 1994928 1994933 TATATA 1994921 3.73 good homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTGCCTgaataatataaattaTATATAaatcttAtttat 1994134 1994856 R sdiA sdiAp8 Sigma70 1994965 1994970 TTGCAA 19 1994940 1994945 TAATAT 1994934 5.12 high homology 5.13E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggcTTGCAAaagtaattcattgcctgaaTAATATaaattAtatat 1994134 1994856 R sdiA sdiAp9 Sigma70 1994949 1994954 TTGCCT 17 1994926 1994931 TATAAA 1994921 5.356 high homology 2.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTGCCTgaataatataaattataTATAAAtcttAtttat 1995086 1995838 R yecC yecCp2 Sigma70 1996063 1996068 TTGCCG 20 1996037 1996042 TAGCCT 1996031 2.684 poor homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgTTGCCGccgctgtcgaacagctttatTAGCCTggtaaAagata 2005701 2006114 R yedD yedDp1 Sigma70 2006302 2006307 ATGACA 21 2006275 2006280 GAAGGT 2006269 1.933 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgccATGACAtgaatgtagcctctgaactcaGAAGGTttgaaAcaaga 2005701 2006114 R yedD yedDp2 Sigma70 2006215 2006220 TTCACA 16 2006193 2006198 CAAATT 2006186 1.993 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTCACAaaaataatagttagatCAAATTtctctcTgaacc 2005701 2006114 R yedD yedDp3 Sigma70 2006316 2006321 TTTGAA 15 2006295 2006300 GAATGT 2006288 2.1 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtgTTTGAAttgctgccatgacatGAATGTagcctcTgaact 2005701 2006114 R yedD yedDp5 Sigma70 2006315 2006320 TTGAAT 19 2006290 2006295 TAGCCT 2006285 3.88 good homology 2.06E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgtTTGAATtgctgccatgacatgaatgTAGCCTctgaActcag 2006301 2007506 F yedE yedEp1 Sigma70 2006183 2006188 TTCAGA 20 2006209 2006214 TATTTT 2006220 2.404 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaggTTCAGAgagaaatttgatctaactatTATTTTtgtgaAttatt 2006301 2007506 F yedE yedEp3 Sigma70 2006224 2006229 TTACCC 21 2006251 2006256 TATGAT 2006262 3.123 poor homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTACCCcgaaaataaatttgcatggtgTATGATtcgcgActctt 2006301 2007506 F yedE yedEp5 Sigma70 2006214 2006219 TTGTGA 16 2006236 2006241 TAAATT 2006247 3.313 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTGTGAattattaccccgaaaaTAAATTtgcatGgtgta 2006301 2007506 F yedE yedEp6 Sigma70 2006208 2006213 TTATTT 17 2006231 2006236 GAAAAT 2006243 3.326 good homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactaTTATTTttgtgaattattaccccGAAAATaaatttGcatgg 2006301 2007506 F yedE yedEp7 Sigma70 2006183 2006188 TTCAGA 17 2006206 2006211 TATTAT 2006216 4.516 high homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaggTTCAGAgagaaatttgatctaacTATTATttttGtgaat 2007845 2008513 F yedK yedKp1 Sigma70 2007789 2007794 ATAGAT 18 2007813 2007818 TATTCT 2007824 2.428 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcacATAGATtttacccgcccccactccTATTCTtttcaGtatga 2008624 2009103 F yedL yedLp1 Sigma70 2008496 2008501 TTAATT 20 2008522 2008527 GAGATT 2008532 1.454 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggagTTAATTcaacctgtttgataagcctgGAGATTattgAtcaac 2008624 2009103 F yedL yedLp2 Sigma70 2008444 2008449 CTGGCA 21 2008471 2008476 TAATGT 2008482 2.433 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcCTGGCAcccggtatcgcgcgcggtgggTAATGTtaaaaAccagg 2008624 2009103 F yedL yedLp3 Sigma70 2008529 2008534 TTGATC 15 2008550 2008555 TAAGAA 2008562 2.77 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTGATCaacaatactgcgtcaTAAGAAatctctAttaga 2008624 2009103 F yedL yedLp4 Sigma70 2008500 2008505 TTCAAC 18 2008524 2008529 GATTAT 2008535 2.828 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaTTCAACctgtttgataagcctggaGATTATtgatcAacaat 2022659 2022847 R dsrB dsrBp1 Sigma70 2023051 2023056 CTGACC 21 2023024 2023029 TACTCT 2023018 2.263 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgacgCTGACCtcacgttttgcggtatcgctgTACTCTtttgcGgtttt 2022659 2022847 R dsrB dsrBp3 Sigma70 2023010 2023015 TTTCAT 19 2022985 2022990 TACTCT 2022978 3.35 good homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggtTTTCATcatctttcctcgcaaccgtTACTCTgttgttGccgcc 2022659 2022847 R dsrB dsrBp4 Sigma70 2022896 2022901 CTGCCA 17 2022873 2022878 TACACT 2022867 4.426 high homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgCTGCCAgaaaaacgaaattgttcTACACTggcacAaagcc 2023535 2024350 F yedP yedPp1 Sigma70 2023386 2023391 ATGAAT 19 2023411 2023416 TAGAAA 2023421 2.3 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccatATGAATgattaacgctacttatgaaTAGAAAtgtgAcgcac 2023535 2024350 F yedP yedPp2 Sigma70 2023479 2023484 TTTGAT 15 2023500 2023505 GAGAAT 2023512 2.37 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcTTTGATaatttgtgcggttttGAGAATcatcctGgtaag 2026212 2026394 R yodC yodCp1 Sigma70 2026572 2026577 ATGATA 20 2026546 2026551 GATTCT 2026541 2.264 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgATGATAttaccgactgttttaaatctGATTCTtggaTttatc 2026212 2026394 R yodC yodCp4 Sigma70 2026471 2026476 TTAATA 18 2026447 2026452 CAAAAT 2026441 3.038 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacaTTAATActcgcactggctattatgCAAAATtcgccAtcttc 2026212 2026394 R yodC yodCp5 Sigma70 2026450 2026455 ATGCAA 17 2026427 2026432 TAAGGT 2026421 3.926 good homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctattATGCAAaattcgccatcttcaacTAAGGTgaacaAgtttc 2026212 2026394 R yodC yodCp6 Sigma70 2026555 2026560 TTTAAA 15 2026534 2026539 TATCAT 2026528 4.42 high homology 3.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgtTTTAAAtctgattcttggattTATCATcggcgGcatcg 2026473 2027390 R yedI yedIp2 Sigma70 2027516 2027521 GTGAAA 20 2027490 2027495 TATAAT 2027485 3.494 good homology 2.75E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaacGTGAAAatcattctgctggcgagagaTATAATtgcaCttgat 2026473 2027390 R yedI yedIp3 Sigma70 2027427 2027432 TTGCTT 21 2027400 2027405 TAAAAA 2027394 3.863 good homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtttTTGCTTcatacttacacccttcaacaaTAAAAAtgagaGggaat 2027563 2028483 F yedA yedAp1 Sigma70 2027424 2027429 ATGAAG 16 2027446 2027451 GATACT 2027458 2.683 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtATGAAGcaaaaacggcagctctGATACTtgcttcAcaggt 2027563 2028483 F yedA yedAp2 Sigma70 2027402 2027407 TTTATT 15 2027423 2027428 TATGAA 2027434 2.77 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTTATTgttgaagggtgtaagTATGAAgcaaaAacggc 2027563 2028483 F yedA yedAp3 Sigma70 2027451 2027456 TTGCTT 18 2027475 2027480 TAACAA 2027485 3.168 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatacTTGCTTcacaggtcaacattttttTAACAAtcaaGtgcaa 2030408 2031103 R yedJ yedJp1 Sigma70 2031145 2031150 ATGAAT 18 2031121 2031126 GACTCT 2031115 2.438 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgctATGAATaaaaactgctaaggtggcGACTCTttggcAacgga 2030408 2031103 R yedJ yedJp4 Sigma70 2031280 2031285 TTGAAA 21 2031253 2031258 GAAAGT 2031247 4.283 high homology 6.02E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggatTTGAAAgcgatttaggctctaccgcggGAAAGTggttaGgggca 2034818 2036176 R yedV yedVp2 Sigma70 2036375 2036380 TTGGCT 19 2036350 2036355 GAAATT 2036343 2.9 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttactTTGGCTactggcctccagagctggcGAAATTatacccAgaacg 2034818 2036176 R yedV yedVp4 Sigma70 2036268 2036273 TTCGCA 17 2036245 2036250 GATGAT 2036239 3.246 good homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaTTCGCAggctccgcgcaaaagttGATGATcctttTcctga 2036980 2037393 F hiuH hiuHp1 Sigma70 2036903 2036908 TTGTAA 21 2036930 2036935 GACGCT 2036941 2.593 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaTTGTAAtgctgctgtaaggttaccctgGACGCTttttcGctatc 2036980 2037393 F hiuH hiuHp2 Sigma70 2036922 2036927 TTACCC 15 2036943 2036948 TATCCT 2036953 2.82 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTACCCtggacgctttttcgcTATCCTcaaaActcat 2036980 2037393 F hiuH hiuHp3 Sigma70 2036895 2036900 TTACAA 16 2036917 2036922 TAAGGT 2036929 3.263 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttcaTTACAAaattgtaatgctgctgTAAGGTtaccctGgacgc 2036980 2037393 F hiuH hiuHp5 Sigma70 2036846 2036851 ATGAAA 18 2036870 2036875 TATGTT 2036881 3.658 good homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttcATGAAAataatatgccataaatcaTATGTTatagaAacagc 2036980 2037393 F hiuH hiuHp6 Sigma70 2036827 2036832 TTCAAT 20 2036853 2036858 TAATAT 2036864 3.764 good homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTCAATaagtagaatcttcatgaaaaTAATATgccatAaatca 2037502 2038506 F yedY yedYp1 Sigma70 2037348 2037353 TTTATT 16 2037370 2037375 TATTCA 2037380 2.653 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgccTTTATTacttagccaatatgggTATTCAacctAtcgtg 2037502 2038506 F yedY yedYp2 Sigma70 2037311 2037316 TTCATA 17 2037334 2037339 CATTAT 2037345 3.306 good homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaatTTCATAttaataaagtgaacgagCATTATcatgtGccttt 2037502 2038506 F yedY yedYp3 Sigma70 2037310 2037315 TTTCAT 21 2037337 2037342 TATCAT 2037348 3.793 good homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgaaTTTCATattaataaagtgaacgagcatTATCATgtgccTttatt 2040392 2040922 F yodB yodBp1 Sigma70 2040153 2040158 ATCACT 20 2040179 2040184 TAAGCT 2040190 1.764 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctcATCACTatgacgtgtctgtatattaaTAAGCTaacccGcattg 2040392 2040922 F yodB yodBp2 Sigma70 2040175 2040180 TTAATA 18 2040199 2040204 TAACCA 2040210 2.358 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtataTTAATAagctaacccgcattgagtTAACCAataacGgattc 2040392 2040922 F yodB yodBp3 Sigma70 2040193 2040198 TTGAGT 21 2040220 2040225 CACAAT 2040232 2.473 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcaTTGAGTtaaccaataacggattccataCACAATacggccAacaga 2040392 2040922 F yodB yodBp5 Sigma70 2040316 2040321 TTAAAA 15 2040337 2040342 GAATTT 2040348 2.52 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTAAAAccacatctgtataagGAATTTttaagGttcgt 2040392 2040922 F yodB yodBp6 Sigma70 2040193 2040198 TTGAGT 19 2040218 2040223 TACACA 2040229 2.76 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcaTTGAGTtaaccaataacggattccaTACACAatacgGccaac 2040392 2040922 F yodB yodBp7 Sigma70 2040278 2040283 TTACAA 18 2040302 2040307 TAAATA 2040312 2.848 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctggTTACAAtatgcactatcaatttttTAAATAacaaAttatt 2040392 2040922 F yodB yodBp10 Sigma70 2040270 2040275 TTGGCT 15 2040291 2040296 TATCAA 2040303 2.98 poor homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTGGCTggttacaatatgcacTATCAAttttttAaataa 2040392 2040922 F yodB yodBp12 Sigma70 2040261 2040266 TTGCTT 17 2040284 2040289 TATGCA 2040295 4.106 high homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaTTGCTTatattggctggttacaaTATGCActatcAatttt 2042962 2050038 F yeeJ yeeJp1 Sigma70 2042876 2042881 TTTCAA 15 2042897 2042902 TATTTA 2042908 2.46 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatTTTCAAtcatattgctatcagTATTTAcatttTttcgc 2042962 2050038 F yeeJ yeeJp3 Sigma70 2042800 2042805 TTATAA 16 2042822 2042827 TAGTCT 2042833 2.663 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgaTTATAAaacttgagttattcagTAGTCTcccctCttgca 2042962 2050038 F yeeJ yeeJp4 Sigma70 2042724 2042729 TTTAAC 21 2042751 2042756 TATGGT 2042762 3.053 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggttTTTAACatcttaagcgccctcgaccttTATGGTtgaggGcgttt 2042962 2050038 F yeeJ yeeJp6 Sigma70 2042876 2042881 TTTCAA 19 2042901 2042906 TACATT 2042912 3.52 good homology 0.000141955 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatTTTCAAtcatattgctatcagtattTACATTttttcGctgtg 2051667 2052983 F shiA shiAp1 Sigma70 2051619 2051624 TTACCT 21 2051646 2051651 GACAGT 2051656 2.233 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgagTTACCTtttccatactaattataaaaaGACAGTacaaAcagga 2051667 2052983 F shiA shiAp2 Sigma70 2051595 2051600 TTTATA 19 2051620 2051625 TACCTT 2051630 2.44 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttcgTTTATAgatcgacggcaatgtgagtTACCTTttccAtacta 2051667 2052983 F shiA shiAp3 Sigma70 2051625 2051630 TTTCCA 20 2051651 2051656 TACAAA 2051661 2.574 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacctTTTCCAtactaattataaaaagacagTACAAAcaggAtcatt 2051667 2052983 F shiA shiAp5 Sigma70 2051619 2051624 TTACCT 15 2051640 2051645 TAAAAA 2051650 3.12 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgagTTACCTtttccatactaattaTAAAAAgacaGtacaa 2051667 2052983 F shiA shiAp7 Sigma70 2051556 2051561 TTGCAG 16 2051578 2051583 TAGTCT 2051589 3.593 good homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcatTTGCAGatgcgctctgtcgaggTAGTCTcataaGgttcg 2051667 2052983 F shiA shiAp11 Sigma70 2051523 2051528 TTTCAT 18 2051547 2051552 TAAAAT 2051558 4.928 high homology 2.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaattTTTCATgttgccgctaatcagccaTAAAATcatttGcagat 2054882 2055598 F yeeN yeeNp2 Sigma70 2054677 2054682 TTAAAA 18 2054701 2054706 CACAAT 2054712 2.988 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acataTTAAAAgcaagtatgctttcaaaaCACAATtataaAaaatc 2054882 2055598 F yeeN yeeNp4 Sigma70 2054779 2054784 TTTCTA 20 2054805 2054810 TATGAT 2054816 3.574 good homology 7.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttttaTTTCTAatagacgagatttttccTGtTATGATataatAtgctg 2054882 2055598 F yeeN yeeNp5 Sigma70 2054824 2054829 TTAACA 19 2054849 2054854 TAATGT 2054860 3.66 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTAACAcatgttaacgatttaccagTAATGTaaataAatttt 2054882 2055598 F yeeN yeeNp6 Sigma70 2054745 2054750 TTAAAT 17 2054768 2054773 GAATAT 2054778 3.946 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTAAATataagattatggctttaGAATATttttAtttct 2054882 2055598 F yeeN yeeNp7 Sigma70 2054745 2054750 TTAAAT 15 2054766 2054771 TAGAAT 2054778 4.26 high homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTAAATataagattatggcttTAGAATatttttAtttct 2056051 2056126 R asnW asnWp2 Sigma70 2056235 2056240 TTGTGT 21 2056208 2056213 GATTAT 2056203 2.443 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccagTTGTGTcggaataaacgacaaaatgcaGATTATttcaGcaaac 2056051 2056126 R asnW asnWp3 Sigma70 2056203 2056208 TTTCAG 16 2056181 2056186 TAAAAA 2056176 2.583 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTTCAGcaaacgatttcaaattTAAAAAacagGctttg 2056051 2056126 R asnW asnWp6 Sigma70 2056169 2056174 TTTGAC 18 2056145 2056150 TAATAT 2056138 3.178 good homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTTGACattgtgggtgggcatcgcTAATATtcgcctCgttct 2056051 2056126 R asnW asnWp7 Sigma70 2056189 2056194 TTCAAA 17 2056166 2056171 GACATT 2056161 3.476 good homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgatTTCAAAtttaaaaaacaggctttGACATTgtggGtgggc 2056227 2057714 R yeeO yeeOp2 Sigma70 2057792 2057797 TTCTAT 21 2057765 2057770 GACAAT 2057759 2.223 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgtTTCTATcaacagtttgttgcatttgcaGACAATttgttGgcgaa 2056227 2057714 R yeeO yeeOp3 Sigma70 2057756 2057761 TTGGCG 20 2057730 2057735 GATTCT 2057724 2.414 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttgTTGGCGaaaatctttgcagctttgctGATTCTccctcAttatt 2056227 2057714 R yeeO yeeOp4 Sigma70 2057816 2057821 TTAAAT 21 2057789 2057794 TATCAA 2057782 2.593 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTAAATtccccaactgtttgccgtttcTATCAAcagtttGttgca 2056227 2057714 R yeeO yeeOp7 Sigma70 2057776 2057781 TTGCAT 19 2057751 2057756 GAAAAT 2057746 4.26 high homology 2.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttgTTGCATttgcagacaatttgttggcGAAAATctttGcagct 2060415 2061347 R erfK erfKp1 Sigma70 2061418 2061423 TTGAAC 19 2061393 2061398 GATAAA 2061388 2.73 poor homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTGAACagttaaaaacgaaaagtctGATAAAagctAtactt 2060415 2061347 R erfK erfKp4 Sigma70 2061410 2061415 TTAAAA 20 2061384 2061389 TATACT 2061378 4.684 high homology 6.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacagTTAAAAacgaaaagtctgataaaagcTATACTtaacgGatagc 2061412 2062491 R cobT cobTp2 Sigma70 2062670 2062675 TTGCTG 16 2062648 2062653 TATGCA 2062643 2.553 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTGCTGccgtattattgccgggTATGCAtggtGtggct 2061412 2062491 R cobT cobTp4 Sigma70 2062683 2062688 TTAGCC 16 2062661 2062666 TATTAT 2062655 2.883 poor homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcggcTTAGCCgctatttttgctgccgTATTATtgccgGgtatg 2061412 2062491 R cobT cobTp6 Sigma70 2062606 2062611 TTTCAT 21 2062579 2062584 TACGCT 2062573 3.183 good homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgatTTTCATcctcggtcagcttctcaaacgTACGCTgggcgGgcaaa 2061412 2062491 R cobT cobTp8 Sigma70 2062656 2062661 TTGCCG 20 2062630 2062635 TATGGT 2062625 3.494 good homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tattaTTGCCGggtatgcatggtgtggcTGcTATGGTggtgAcgatg 2064329 2065345 R insH insHp2 Sigma70 2065553 2065558 TTGCTC 19 2065528 2065533 TATTCT 2065522 3.98 good homology 5.22E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacgTTGCTCtgagtgtgataaaccttttTATTCTtgatgAtgtca 2064329 2065345 R insH insHp3 Sigma70 2065523 2065528 TTGATG 17 2065500 2065505 GAATAT 2065493 4.186 high homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTGATGatgtcagcgagaagatgGAATATatccccGactgg 2066976 2067881 R insD insDp1 Sigma70 2067982 2067987 TTGCTG 16 2067960 2067965 TAAAGA 2067954 2.733 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaacTTGCTGccgccatgaagcagatTAAAGAactccAgcgcc 2069339 2069542 F isrC isrCp1 Sigma70 2069201 2069206 TTGCCC 16 2069223 2069228 GATTTT 2069234 2.453 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctctgTTGCCCgtgcggtatggaactgGATTTTcttctGaacct 2072803 2074335 F yeeR yeeRp1 Sigma70 2072759 2072764 TTCGCT 17 2072782 2072787 GATATT 2072792 3.066 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacaTTCGCTggcattaacaataacatGATATTcatcAcggag 2077056 2077385 R yeeX yeeXp1 Sigma70 2077520 2077525 TTCGAT 20 2077494 2077499 GATAGT 2077488 2.064 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgcTTCGATtcagcaaggataaagggtatGATAGTgaaaaGggata 2077056 2077385 R yeeX yeeXp2 Sigma70 2077524 2077529 CTGCTT 21 2077497 2077502 TATGAT 2077491 3.063 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgCTGCTTcgattcagcaaggataaagggTATGATagtgaAaaggg 2077056 2077385 R yeeX yeeXp3 Sigma70 2077423 2077428 TTGCTT 18 2077399 2077404 CATTAT 2077393 3.388 good homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcggTTGCTTaaacgaatccgactctcaCATTATcagggGtataa 2077056 2077385 R yeeX yeeXp4 Sigma70 2077471 2077476 TTGTCA 17 2077448 2077453 TAATGT 2077441 4.966 high homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTGTCAtctgcggcagctatgagTAATGTtggcccTaacga 2077557 2078615 R yeeA yeeAp1 Sigma70 2078709 2078714 TTACAC 20 2078683 2078688 GATAAT 2078677 2.464 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaaaTTACACtgttcccggtttgtccgtcgGATAATtcagaGgcgcg 2077557 2078615 R yeeA yeeAp3 Sigma70 2078769 2078774 TTTTTT 15 2078748 2078753 TAAGAT 2078742 2.99 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actctTTTTTTtgaaagcgaaaagagTAAGATgcgccTttcaa 2077557 2078615 R yeeA yeeAp4 Sigma70 2078737 2078742 TTTCAA 18 2078713 2078718 GAAATT 2078707 3.118 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgccTTTCAAttttttcgctcctgccggGAAATTacactGttccc 2077557 2078615 R yeeA yeeAp5 Sigma70 2078731 2078736 TTTTTT 17 2078708 2078713 TACACT 2078701 4.086 high homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcaaTTTTTTcgctcctgccgggaaatTACACTgttcccGgtttg 2079405 2080571 R dacD dacDp1 Sigma70 2080631 2080636 TTCCAG 20 2080605 2080610 TAAAAA 2080599 2.094 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTCCAGccagttcataagtatttccgTAAAAAgaacaGctatt 2079405 2080571 R dacD dacDp2 Sigma70 2080611 2080616 TTTCCG 18 2080587 2080592 GAAACT 2080581 2.848 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtaTTTCCGtaaaaagaacagctatttGAAACTcctgaGggttt 2079405 2080571 R dacD dacDp3 Sigma70 2080795 2080800 TTGCTT 15 2080774 2080779 TAGGTT 2080767 3.15 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgTTGCTTaccgtcattcatcatTAGGTTaaatccGttatt 2082250 2082477 R yeeD yeeDp1 Sigma70 2082509 2082514 CTGGCA 19 2082484 2082489 TAAGGT 2082478 2.08 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgaCTGGCAactgctgcggcaaattaagTAAGGTgtaaaGatggt 2082250 2082477 R yeeD yeeDp3 Sigma70 2082600 2082605 CTGGCA 21 2082573 2082578 TATGAT 2082567 3.013 poor homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgacCTGGCAgggctggattggccttgtattTATGATtctcgGagtct 2083728 2085086 R yeeF yeeFp1 Sigma70 2085194 2085199 TTCGTA 16 2085172 2085177 TAAAAA 2085166 2.373 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggcTTCGTAccggatagatatttacTAAAAAtcgacAgttgt 2083728 2085086 R yeeF yeeFp3 Sigma70 2085315 2085320 TTGTCA 17 2085292 2085297 CACAAT 2085286 3.746 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcTTGTCAtttcccccccatttaggCACAATgcgccGctgtc 2085353 2086282 R yeeY yeeYp1 Sigma70 2086451 2086456 CTGGAA 17 2086428 2086433 TAGTCT 2086422 3.216 good homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggggCTGGAAcctccgcagttcagaaaTAGTCTggacaGcggca 2086328 2087152 R yeeZ yeeZp1 Sigma70 2087199 2087204 TTTGAT 15 2087178 2087183 TATAGA 2087172 2.57 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagtTTTGATacgctagcgtagcctTATAGAtctaaGgtgta 2086328 2087152 R yeeZ yeeZp2 Sigma70 2087220 2087225 TTCATA 20 2087194 2087199 TACGCT 2087188 2.834 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attcaTTCATAgaatgaattgtcagtttTGaTACGCTagcgtAgcctt 2086328 2087152 R yeeZ yeeZp3 Sigma70 2087242 2087247 TTATCA 20 2087216 2087221 TAGAAT 2087210 3.014 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgTTATCAttattgaacagattcattcaTAGAATgaattGtcagt 2086328 2087152 R yeeZ yeeZp4 Sigma70 2087212 2087217 ATGAAT 17 2087189 2087194 TAGCGT 2087182 3.136 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atagaATGAATtgtcagttttgatacgcTAGCGTagccttAtagat 2086328 2087152 R yeeZ yeeZp5 Sigma70 2087266 2087271 TTCACT 19 2087241 2087246 TATCAT 2087235 3.72 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgaTTCACTgctcattgcagcatgtcgtTATCATtattgAacaga 2087235 2087489 R yoeB yoeBp1 Sigma70 2087681 2087686 ATGAAA 20 2087655 2087660 GATCCT 2087650 2.064 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatgATGAAAgccgttgaagatcatgccccGATCCTtattActcgt 2087235 2087489 R yoeB yoeBp2 Sigma70 2087696 2087701 TTGTCG 21 2087669 2087674 GAAGAT 2087664 2.303 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTGTCGgcaacaatgatgaaagccgttGAAGATcatgCcccga 2095345 2096325 R cld cldp2 Sigma70 2096409 2096414 TTCATT 19 2096384 2096389 TAGCAT 2096378 2.58 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTCATTatttttatcacttatcctaTAGCATtcacgAggatt 2095345 2096325 R cld cldp3 Sigma70 2096434 2096439 TTGTCT 21 2096407 2096412 CATTAT 2096402 2.673 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaTTGTCTtttgttacttacacaacaattCATTATttttAtcact 2095345 2096325 R cld cldp4 Sigma70 2096461 2096466 TTGTTA 19 2096436 2096441 GATTGT 2096430 2.75 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatcTTGTTAtcagggctatttacgccctGATTGTcttttGttact 2095345 2096325 R cld cldp5 Sigma70 2096385 2096390 ATAGCA 17 2096362 2096367 TAAACT 2096356 3.416 good homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcctATAGCAttcacgaggattatcgcTAAACTatgcgGacttg 2095345 2096325 R cld cldp6 Sigma70 2096427 2096432 TTGTTA 17 2096404 2096409 TATTTT 2096399 4.796 high homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcttTTGTTActtacacaacaattcatTATTTTtatcActtat 2096471 2097637 R ugd ugdp1 Sigma70 2097732 2097737 TTGCGT 16 2097710 2097715 TAGCGT 2097705 2.233 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcgTTGCGTtgaccatcgaacaacgTAGCGTtaaaActttt 2096471 2097637 R ugd ugdp2 Sigma70 2097841 2097846 TTGCAC 19 2097816 2097821 TATCTT 2097811 3.2 good homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtataTTGCACcgggcttttttttgccaaaTATCTTatagActaaa 2096471 2097637 R ugd ugdp3 Sigma70 2097785 2097790 TTAACT 20 2097759 2097764 TATAAA 2097754 3.214 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTAACTtaataaatatcagctattctTATAAAgaaaAtctga 2096471 2097637 R ugd ugdp7 Sigma70 2097780 2097785 TTAATA 21 2097753 2097758 GAAAAT 2097748 3.423 good homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaacTTAATAaatatcagctattcttataaaGAAAATctgaAttgtt 2096471 2097637 R ugd ugdp9 Sigma70 2097791 2097796 TTAATA 20 2097765 2097770 TATTCT 2097759 3.824 good homology 4.63E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgcTTAATAttaacttaataaatatcagcTATTCTtataaAgaaaa 2096471 2097637 R ugd ugdp10 Sigma70 2097705 2097710 TTAAAA 17 2097682 2097687 GATGCT 2097677 3.976 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcgTTAAAActtttagctcttatcagGATGCTaaaaAcatca 2099919 2100935 R insH insHp1 Sigma70 2100991 2100996 TTTATT 20 2100965 2100970 TAAGGA 2100960 1.434 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTTATTgtgtcatttatgttagggatTAAGGAaggtGcgaac 2099919 2100935 R insH insHp2 Sigma70 2100999 2101004 TTTCTG 16 2100977 2100982 TATGTT 2100972 2.343 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgcTTTCTGattttattgtgtcattTATGTTagggAttaag 2099919 2100935 R insH insHp3 Sigma70 2101111 2101116 CTGACA 15 2101090 2101095 GAAAGT 2101085 2.66 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttgCTGACAtatattaaatatgtcGAAAGTaagcGttatg 2099919 2100935 R insH insHp4 Sigma70 2101147 2101152 TTGAAT 18 2101123 2101128 CATGAT 2101117 3.738 good homology 3.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTGAATcccgatatcatcatgaagCATGATgatttGctgac 2099919 2100935 R insH insHp5 Sigma70 2101147 2101152 TTGAAT 21 2101120 2101125 GATGAT 2101114 4.113 high homology 1.85E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTGAATcccgatatcatcatgaagcatGATGATttgctGacata 2099919 2100935 R insH insHp6 Sigma70 2101101 2101106 TTAAAT 17 2101078 2101083 TATGCT 2101073 4.996 high homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atataTTAAATatgtcgaaagtaagcgtTATGCTtttaGtacat 2101415 2102533 R wbbK wbbKp2 Sigma70 2102613 2102618 TTGTTA 19 2102588 2102593 TACTGT 2102583 3.32 good homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTGTTAgaggttctattcccgaaaaTACTGTcattGcggga 2101415 2102533 R wbbK wbbKp3 Sigma70 2102700 2102705 TTGGCC 17 2102677 2102682 GAGAAT 2102671 3.416 good homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtaaTTGGCCagagggtttggttgggtGAGAATgtgacGgtttt 2104084 2105250 R rfc rfcp1 Sigma70 2105304 2105309 ATGCAT 21 2105277 2105282 TATCAA 2105271 1.963 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgatATGCATcaagtgatatctgccgctcttTATCAAgtgaaAaatat 2104084 2105250 R rfc rfcp2 Sigma70 2105339 2105344 TTGGCG 16 2105317 2105322 TAAATA 2105311 2.243 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatTTGGCGggcgtttggccgagtaTAAATAttatgAtatgc 2104084 2105250 R rfc rfcp3 Sigma70 2105345 2105350 TTATAT 20 2105319 2105324 TATAAA 2105314 2.434 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaggTTATATttggcgggcgtttggccgagTATAAAtattAtgata 2104084 2105250 R rfc rfcp4 Sigma70 2105448 2105453 TTAGAG 21 2105421 2105426 TACTAT 2105414 2.523 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccaTTAGAGtggaaagttggcgacgaacccTACTATccagttAatgat 2104084 2105250 R rfc rfcp6 Sigma70 2105328 2105333 TTGGCC 17 2105305 2105310 TATGCA 2105300 3.146 good homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggcgtTTGGCCgagtataaatattaTGaTATGCAtcaaGtgata 2104084 2105250 R rfc rfcp8 Sigma70 2105288 2105293 CTGCCG 19 2105263 2105268 TATAAT 2105258 3.46 good homology 3.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatCTGCCGctctttatcaagtgaaaaaTATAATgagtAcggat 2104084 2105250 R rfc rfcp9 Sigma70 2105468 2105473 TTGTTA 15 2105447 2105452 TAGAGT 2105441 3.83 good homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacggTTGTTAcaaaagaatatccatTAGAGTggaaaGttggc 2104084 2105250 R rfc rfcp10 Sigma70 2105339 2105344 TTGGCG 20 2105313 2105318 TATTAT 2105307 3.834 good homology 4.68E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatTTGGCGggcgtttggccgagtataaaTATTATgatatGcatca 2104084 2105250 R rfc rfcp11 Sigma70 2105495 2105500 TTGACT 16 2105473 2105478 TACGGT 2105468 4.013 high homology 3.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acattTTGACTatgttgagacaaagcaTACGGTtgttAcaaaa 2104084 2105250 R rfc rfcp12 Sigma70 2105367 2105372 TTAGCT 17 2105344 2105349 TATATT 2105338 4.366 high homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagagTTAGCTagcagagaagacaaggtTATATTtggcgGgcgtt 2106361 2107608 R rfbX rfbXp1 Sigma70 2107794 2107799 TTGGTT 21 2107767 2107772 CAATAT 2107760 2.263 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGGTTctgtctgatatcgctgaatttCAATATaaaactAcaaac 2106361 2107608 R rfbX rfbXp2 Sigma70 2107747 2107752 TTATCA 20 2107721 2107726 TATGTT 2107715 2.324 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactaTTATCAtcctgaaagcgattgtggaaTATGTTggaatGatgaa 2106361 2107608 R rfbX rfbXp4 Sigma70 2107747 2107752 TTATCA 17 2107724 2107729 GAATAT 2107718 3.186 good homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactaTTATCAtcctgaaagcgattgtgGAATATgttggAatgat 2106361 2107608 R rfbX rfbXp6 Sigma70 2107641 2107646 TTTACG 19 2107616 2107621 TAAAAT 2107610 4.12 high homology 3.43E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggctcTTTACGttagatgagcttatcagatTAAAATtaattGcatga 2106361 2107608 R rfbX rfbXp7 Sigma70 2107770 2107775 TTTCAA 15 2107749 2107754 TATTAT 2107742 4.63 high homology 2.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTTCAAtataaaactacaaacTATTATcatcctGaaagc 2106361 2107608 R rfbX rfbXp8 Sigma70 2107769 2107774 TTCAAT 17 2107746 2107751 TATCAT 2107740 4.876 high homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaatTTCAATataaaactacaaactatTATCATcctgaAagcga 2112526 2113920 R wcaM wcaMp2 Sigma70 2114024 2114029 TTGGCT 21 2113997 2114002 GAAAAA 2113991 2.393 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgaaTTGGCTccggtcgtcaaacgcgcgcgcGAAAAAgttgaAcacga 2116704 2118182 R wzxC wzxCp1 Sigma70 2118224 2118229 TTTCCT 21 2118197 2118202 TAACAA 2118192 2.023 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgtTTTCCTgacggtgttcaaaggtttcgtTAACAAagcgGcatat 2116704 2118182 R wzxC wzxCp5 Sigma70 2118390 2118395 TTGAAG 16 2118368 2118373 TAAGGT 2118361 3.903 good homology 4.97E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcaTTGAAGgctacatgctgcgccaTAAGGTgaaaccGggcat 2137783 2139636 R asmA asmAp1 Sigma70 2139831 2139836 TTGTGC 19 2139806 2139811 TAAGCT 2139799 2.1 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTGTGCtggagttctacaactccggTAAGCTgccgctGgcgct 2145698 2147050 F yegD yegDp2 Sigma70 2145635 2145640 TTGTCG 17 2145658 2145663 TAAAGT 2145668 4.756 high homology 9.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccggTTGTCGcgacggcaacatttcgcTAAAGTcacgCccctt 2147063 2149009 R yegI yegIp1 Sigma70 2149098 2149103 TTTATT 21 2149071 2149076 TAGAAA 2149064 2.523 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTTATTcttgagtgggttttccccataTAGAAAtaatttTaatgg 2147063 2149009 R yegI yegIp3 Sigma70 2149098 2149103 TTTATT 19 2149073 2149078 TATAGA 2149068 2.8 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTTATTcttgagtgggttttccccaTATAGAaataAtttta 2147063 2149009 R yegI yegIp4 Sigma70 2149066 2149071 ATAATT 15 2149045 2149050 TATTAT 2149039 2.86 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tagaaATAATTttaatggttagtTGtTATTATtcattGaaata 2147063 2149009 R yegI yegIp5 Sigma70 2149091 2149096 TTGAGT 20 2149065 2149070 TAATTT 2149059 3.104 poor homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTGAGTgggttttccccatatagaaaTAATTTtaatgGttagt 2147063 2149009 R yegI yegIp7 Sigma70 2149132 2149137 TTGAAT 18 2149108 2149113 CATTAT 2149101 3.998 good homology 2.75E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaaaTTGAATtgtatcctgataaaattgCATTATcattttTattct 2147063 2149009 R yegI yegIp8 Sigma70 2149053 2149058 TTAGTT 17 2149030 2149035 TATAAT 2149023 4.936 high homology 2.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatggTTAGTTgttattattcattgaaaTATAATataactAcccgc 2147063 2149009 R yegI yegIp9 Sigma70 2149132 2149137 TTGAAT 21 2149105 2149110 TATCAT 2149100 5.093 high homology 5.03E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaaaTTGAATtgtatcctgataaaattgcatTATCATttttAttctt 2149209 2149670 F yegJ yegJp2 Sigma70 2149155 2149160 TTAACT 15 2149176 2149181 TAACTT 2149187 2.95 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aatgaTTAACTtccacaggttttTGcTAACTTtgactAcaaag 2149209 2149670 F yegJ yegJp5 Sigma70 2149133 2149138 TTCAAT 17 2149156 2149161 TAACTT 2149167 3.796 good homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTCAATttcggcctgataatgatTAACTTccacaGgtttt 2149209 2149670 F yegJ yegJp7 Sigma70 2149005 2149010 TTCATA 18 2149029 2149034 TATTAT 2149040 4.658 high homology 3.99E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTCATAatatttcgcgggtagttaTATTATatttcAatgaa 2149209 2149670 F yegJ yegJp8 Sigma70 2149036 2149041 TTTCAA 21 2149063 2149068 TAAAAT 2149075 4.763 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTTCAAtgaataataacaactaaccatTAAAATtatttcTatatg 2149735 2150496 R yegK yegKp1 Sigma70 2150627 2150632 TTCGTC 21 2150600 2150605 TACAAT 2150594 2.523 poor homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcgTTCGTCagcctttgcctctgcaaggatTACAATtccgtGaactg 2149735 2150496 R yegK yegKp2 Sigma70 2150678 2150683 TTTCCA 19 2150653 2150658 TATGAA 2150646 2.67 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttctTTTCCAtcggtgttcagggggcggaTATGAAgacgctGgcaca 2163213 2163545 F yegP yegPp1 Sigma70 2163108 2163113 TTATCT 20 2163134 2163139 GAAAAT 2163145 2.224 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacaTTATCTctccgccctggcaggcatcaGAAAATcgctcAtactt 2163213 2163545 F yegP yegPp3 Sigma70 2163149 2163154 TTTAAT 18 2163173 2163178 GATGCT 2163185 3.268 good homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catacTTTAATcggtaaacagcacctttaGATGCTgttttcGataca 2163692 2165053 F yegQ yegQp1 Sigma70 2163583 2163588 TTACCA 16 2163605 2163610 TACAAT 2163615 4.183 high homology 4.45E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgctTTACCAgagccccccacagcgcTACAATgcccGccctt 2165326 2165544 R ogrK ogrKp1 Sigma70 2165658 2165663 TTTCTG 20 2165632 2165637 GATAAT 2165626 2.414 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTTCTGatgtggggtacgaaacagaaGATAATgagtgAtgttt 2165326 2165544 R ogrK ogrKp2 Sigma70 2165610 2165615 TTATCT 16 2165588 2165593 TAAATT 2165582 2.973 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTATCTgtttgttttgtaagggTAAATTaactaAaatgg 2165326 2165544 R ogrK ogrKp5 Sigma70 2165602 2165607 TTGTTT 17 2165579 2165584 TAAAAT 2165572 5.656 high homology 1.74E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgtTTGTTTtgtaagggtaaattaacTAAAATggcaccAtcaac 2166736 2167635 F yegS yegSp1 Sigma70 2166684 2166689 TTGTTT 16 2166706 2166711 TACAGA 2166718 2.353 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accttTTGTTTtctgctctacactatcTACAGAccaatcAtaaag 2166736 2167635 F yegS yegSp3 Sigma70 2166671 2166676 CTGACT 20 2166697 2166702 TACACT 2166707 3.194 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgttCTGACTccaccttttgttttctgctcTACACTatctAcagac 2166736 2167635 F yegS yegSp6 Sigma70 2166529 2166534 TTGAAT 21 2166556 2166561 GAAATT 2166567 3.853 good homology 2.35E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttagTTGAATattaggtatatgctcttttttGAAATTtatcgGtggca 2166736 2167635 F yegS yegSp7 Sigma70 2166554 2166559 TTGAAA 18 2166578 2166583 TAGTAT 2166589 5.238 high homology 3.27E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTGAAAtttatcggtggcagccgtTAGTATtcgctGtcccc 2168260 2168559 F insE insEp1 Sigma70 2168132 2168137 TTGGCG 19 2168157 2168162 TAAGCA 2168168 1.95 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTGGCGgtcattaatccttcggcgaTAAGCAttgtcGtactt 2168260 2168559 F insE insEp3 Sigma70 2168045 2168050 GTGCCA 16 2168067 2168072 TAATGT 2168077 2.033 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaccGTGCCAccacagacgaccagagTAATGTctttAttttc 2169857 2170897 R gatD gatDp1 Sigma70 2170936 2170941 TTACCT 20 2170910 2170915 TAACAA 2170904 1.574 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTACCTgagggggaggttatccccctTAACAAtcaggAgtttt 2169857 2170897 R gatD gatDp2 Sigma70 2171031 2171036 TTATCG 19 2171006 2171011 TATTTT 2171001 2.09 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTATCGgtgcaatttatctgaccggTATTTTcatgAcctgg 2180855 2181673 R yegX yegXp2 Sigma70 2181879 2181884 TTGGCT 19 2181854 2181859 CAAACT 2181848 2.74 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTGGCTgcactacgcccgcgccataCAAACTgggctGacacc 2180855 2181673 R yegX yegXp5 Sigma70 2181750 2181755 TTCCAC 18 2181726 2181731 TACTAT 2181721 3.118 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTCCACgcctggtggtgagcaccgTACTATagctGctttg 2180855 2181673 R yegX yegXp7 Sigma70 2181879 2181884 TTGGCT 17 2181856 2181861 TACAAA 2181851 4.226 high homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTGGCTgcactacgcccgcgccaTACAAActggGctgac 2181738 2182538 R thiD thiDp1 Sigma70 2182696 2182701 CTGCCT 19 2182671 2182676 TACGCT 2182665 2.34 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgCTGCCTgctgtgcgttaccaggcgaTACGCTggaaaAtgtcg 2181738 2182538 R thiD thiDp2 Sigma70 2182768 2182773 TTGGTA 18 2182744 2182749 TAATGA 2182738 2.848 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTGGTAttcacggtggtgatccgtTAATGAccaaaGtggta 2184982 2185320 F yohN yohNp1 Sigma70 2184899 2184904 CTAACA 19 2184924 2184929 TATTGT 2184935 2.28 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcaCTAACAaaatatcgcttgtcagttaTATTGTatggcAggaaa 2184982 2185320 F yohN yohNp2 Sigma70 2184879 2184884 TTTACG 18 2184903 2184908 CAAAAT 2184913 2.608 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacttTTTACGaaatcatgggatcactaaCAAAATatcgCttgtc 2184982 2185320 F yohN yohNp3 Sigma70 2184926 2184931 TTGTAT 20 2184952 2184957 GATATT 2184962 2.924 poor homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTGTATggcaggaaagatatgcgactGATATTacagAtcccc 2184982 2185320 F yohN yohNp4 Sigma70 2184848 2184853 ATGCTT 18 2184872 2184877 TACACT 2184882 3.608 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggATGCTTttagggcatcctttcattTACACTttttAcgaaa 2184982 2185320 F yohN yohNp6 Sigma70 2184899 2184904 CTAACA 17 2184922 2184927 TATATT 2184933 3.666 good homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcaCTAACAaaatatcgcttgtcagtTATATTgtatgGcagga 2185402 2186436 R yehA yehAp1 Sigma70 2186508 2186513 TTTCAT 20 2186482 2186487 GAGATT 2186476 1.574 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggacTTTCATgcacaatcaccttcggtaaaGAGATTgatgaAagtag 2185402 2186436 R yehA yehAp2 Sigma70 2186598 2186603 TTGGCG 21 2186571 2186576 TATTTA 2186565 2.013 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTGGCGttgtcggccagggaagtcagtTATTTAttcgcAccaat 2185402 2186436 R yehA yehAp3 Sigma70 2186630 2186635 TTATGA 21 2186603 2186608 TAATAT 2186598 2.463 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttggTTATGAagtcaatgatatccatggtcaTAATATtggcGttgtc 2185402 2186436 R yehA yehAp4 Sigma70 2186508 2186513 TTTCAT 16 2186486 2186491 TAAAGA 2186480 2.593 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggacTTTCATgcacaatcaccttcggTAAAGAgattgAtgaaa 2185402 2186436 R yehA yehAp5 Sigma70 2186628 2186633 ATGAAG 17 2186605 2186610 CATAAT 2186600 3.146 good homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggttATGAAGtcaatgatatccatggtCATAATattgGcgttg 2185402 2186436 R yehA yehAp6 Sigma70 2186526 2186531 TTGATA 19 2186501 2186506 CACAAT 2186494 3.33 good homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcaaTTGATAagcaacaaggactttcatgCACAATcaccttCggtaa 2190537 2190818 R yehE yehEp3 Sigma70 2190932 2190937 TTGATC 15 2190911 2190916 CATTAT 2190905 2.74 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgaTTGATCatacaggcaatgcttCATTATcatccTtcgtg 2190537 2190818 R yehE yehEp4 Sigma70 2190900 2190905 TTCGTG 21 2190873 2190878 TATAGT 2190867 2.773 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catccTTCGTGgctgtgtagtggatgtacagcTATAGTttgttAtgcac 2190537 2190818 R yehE yehEp7 Sigma70 2190932 2190937 TTGATC 18 2190908 2190913 TATCAT 2190902 4.428 high homology 6.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgaTTGATCatacaggcaatgcttcatTATCATccttcGtggct 2191081 2192190 R mrp mrpp1 Sigma70 2192308 2192313 TTACTT 21 2192281 2192286 GATAGT 2192275 2.663 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTACTTcttaatagtgaaaaggggttaGATAGTaccaaAtggga 2191081 2192190 R mrp mrpp3 Sigma70 2192262 2192267 ATGTTA 16 2192240 2192245 TATTCT 2192235 2.933 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaaaATGTTAagtaagtacttctctaTATTCTtcagGtaaac 2201994 2202311 F yehK yehKp1 Sigma70 2201775 2201780 TTTTCA 15 2201796 2201801 TACAAT 2201806 3.87 good homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaagTTTTCAcccggttttaaccacTACAATgttgAtagca 2202618 2203706 F yehL yehLp1 Sigma70 2202508 2202513 TTTACT 15 2202529 2202534 GATATT 2202539 3.18 good homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTTACTgtgatctgctttccaGATATTtttcGctcaa 2202618 2203706 F yehL yehLp3 Sigma70 2202388 2202393 ATTGCA 18 2202412 2202417 TATAAT 2202424 3.408 good homology 5.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttaATTGCAacggggtccagccgtggtTATAATtcgttcGttgga 2202618 2203706 F yehL yehLp4 Sigma70 2202438 2202443 TTGCAC 19 2202463 2202468 GAAAAT 2202474 3.54 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgatgTTGCACaggctgtggtgttaggcctGAAAATagtaaAtaaaa 2202618 2203706 F yehL yehLp5 Sigma70 2202508 2202513 TTTACT 17 2202531 2202536 TATTTT 2202543 4.676 high homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTTACTgtgatctgctttccagaTATTTTtcgctcAaacaa 2210265 2210984 R yehT yehTp1 Sigma70 2211052 2211057 ATGGAA 20 2211026 2211031 GATAGT 2211021 2.004 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgactATGGAAtaagcgtcgcctgtgagcctGATAGTtacaCccgaa 2210265 2210984 R yehT yehTp2 Sigma70 2211078 2211083 TTTACG 16 2211056 2211061 GACTAT 2211050 2.043 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcgTTTACGtgaacggtttggcgatGACTATggaatAagcgt 2210265 2210984 R yehT yehTp4 Sigma70 2211021 2211026 TTACAC 17 2210998 2211003 TACCAT 2210992 3.296 good homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatagTTACACccgaataacgttacgacTACCATggaggGacgag 2212888 2213619 F mlrA mlrAp1 Sigma70 2212826 2212831 CTACCT 18 2212850 2212855 TAAAGT 2212862 2.508 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaCTACCTggttcgcaaaactgcgtcTAAAGTtaaaccGggacc 2212888 2213619 F mlrA mlrAp2 Sigma70 2212717 2212722 TTAACT 17 2212740 2212745 GAAAAA 2212751 3.026 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgtTTAACTttctttgaactcttgcaGAAAAAtgagaAttcgt 2212888 2213619 F mlrA mlrAp3 Sigma70 2212768 2212773 CTCAAA 15 2212789 2212794 TAAAAT 2212801 3.34 good homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcaCTCAAAatcgcctggcaaaaaTAAAATcaccctAtagat 2212888 2213619 F mlrA mlrAp6 Sigma70 2212735 2212740 TTGCAG 19 2212760 2212765 TACGAT 2212771 3.74 good homology 7.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactcTTGCAGaaaaatgagaattcgtgagTACGATcactcAaaatc 2213679 2213786 F yohO yohOp1 Sigma70 2213602 2213607 TTCCCA 20 2213628 2213633 TAACAA 2213638 1.694 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTCCCActcggcatttaatgattcgtTAACAAatgcGcttta 2213679 2213786 F yohO yohOp2 Sigma70 2213521 2213526 TTGCTG 19 2213546 2213551 GAACCT 2213558 2.12 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtacaTTGCTGgtgtggtgcggtgaaaatcGAACCTccgcccAacagc 2213679 2213786 F yohO yohOp3 Sigma70 2213615 2213620 TTTAAT 21 2213642 2213647 TACTGT 2213652 3.383 good homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTTAATgattcgttaacaaatgcgcttTACTGTacaaTccttt 2213679 2213786 F yohO yohOp4 Sigma70 2213623 2213628 TTCGTT 18 2213647 2213652 TACAAT 2213659 3.598 good homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTCGTTaacaaatgcgctttactgTACAATcctttcGttaac 2213679 2213786 F yohO yohOp5 Sigma70 2213640 2213645 TTTACT 15 2213661 2213666 TAACAT 2213672 3.84 good homology 0.000122182 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgcTTTACTgtacaatcctttcgtTAACATaaggaGtgcat 2213679 2213786 F yohO yohOp6 Sigma70 2213577 2213582 TTGGCA 15 2213598 2213603 TATTTT 2213608 4.28 high homology 4.28E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence accagTTGGCAagaacaaggccaTGaTATTTTcccaCtcggc 2220207 2221922 F dld dldp2 Sigma70 2220110 2220115 TTTATT 16 2220132 2220137 TATTCA 2220144 2.653 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcagTTTATTgtctgaattttcaaaaTATTCActcgctGaattg 2220207 2221922 F dld dldp3 Sigma70 2220023 2220028 TTCCTT 19 2220048 2220053 GAAAAT 2220059 2.76 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttcTTCCTTtgttgcccgacgtggcagcGAAAATggtgcAaaaac 2220207 2221922 F dld dldp4 Sigma70 2220125 2220130 TTCAAA 20 2220151 2220156 TATACA 2220161 3.224 good homology 0.000128446 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gaattTTCAAAatattcactcgctgaatTGtTATACAaggcGctatt 2220207 2221922 F dld dldp6 Sigma70 2220142 2220147 CTGAAT 15 2220163 2220168 TATTCT 2220174 3.86 good homology 8.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcgCTGAATtgttatacaaggcgcTATTCTagtttGtgata 2220207 2221922 F dld dldp7 Sigma70 2220071 2220076 TTGCCA 17 2220094 2220099 GAAAAA 2220104 4.046 high homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtagtTTGCCAtaagcatgatggagagaGAAAAAgaatGctcag 2221960 2222892 R pbpG pbpGp2 Sigma70 2222978 2222983 TTGCTC 16 2222956 2222961 TAGCCT 2222950 2.623 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTGCTCgttatgatggcgtcgcTAGCCTcagtaAatcct 2221960 2222892 R pbpG pbpGp5 Sigma70 2223120 2223125 CTGGAA 20 2223094 2223099 TATACT 2223088 3.364 good homology 4.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtaCTGGAAgtgctgctcgccctaaccgtTATACTatgggGctacg 2221960 2222892 R pbpG pbpGp7 Sigma70 2222994 2222999 TTGACG 18 2222970 2222975 TATGAT 2222963 5.048 high homology 1.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcctTTGACGatcgcactttttgctcgtTATGATggcgtcGctagc 2223066 2223653 R yohC yohCp1 Sigma70 2223760 2223765 CTGAAA 20 2223734 2223739 GAAAAT 2223728 2.824 poor homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgCTGAAAaaggacgttcatcagacagtGAAAATtacatGggcga 2223823 2224401 F yohD yohDp1 Sigma70 2223689 2223694 TTCAAG 15 2223710 2223715 GATTAT 2223721 2.77 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gacagTTCAAGtataagtcagctTGtGATTATtttttGttcgc 2223823 2224401 F yohD yohDp3 Sigma70 2223759 2223764 TTTTCA 21 2223786 2223791 TATGCT 2223797 3.363 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcctTTTTCAgcgtgaatgattcacagggtgTATGCTtactgGcaacc 2223823 2224401 F yohD yohDp4 Sigma70 2223689 2223694 TTCAAG 18 2223713 2223718 TATTTT 2223725 3.428 good homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacagTTCAAGtataagtcagcttgtgatTATTTTttgttcGcccat 2224531 2225292 R yohF yohFp1 Sigma70 2225473 2225478 TTGCTG 19 2225448 2225453 CAGAAT 2225443 2.01 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaTTGCTGgttcccgcgtcagcgaagcCAGAATccccGcgctg 2224531 2225292 R yohF yohFp2 Sigma70 2225340 2225345 ATGATA 15 2225319 2225324 TAACGT 2225312 2.82 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgATGATAtgcgccttctatactTAACGTttattcAgcgtt 2227460 2228407 R dusC dusCp3 Sigma70 2228459 2228464 TTTAAT 17 2228436 2228441 TAACAT 2228431 4.766 high homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaccTTTAATccgctgaccataggcgcTAACATagcgCctcat 2228646 2229044 F yohJ yohJp1 Sigma70 2228460 2228465 TTAAAG 21 2228487 2228492 CAAACT 2228497 2.023 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggaTTAAAGgtctgcaaagagggattgctgCAAACTgcaaTccctc 2228646 2229044 F yohJ yohJp4 Sigma70 2228481 2228486 TTGCTG 18 2228505 2228510 TATGCT 2228515 4.338 high homology 7.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaTTGCTGcaaactgcaatccctctcTATGCTtgatGtatgc 2230900 2231619 F sanA sanAp1 Sigma70 2230835 2230840 TTTCTT 21 2230862 2230867 TAGCCT 2230873 2.363 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgTTTCTTgcgcaaaaccagcgggtaaagTAGCCTgatggAaattt 2230900 2231619 F sanA sanAp2 Sigma70 2230835 2230840 TTTCTT 16 2230857 2230862 TAAAGT 2230868 3.663 good homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgTTTCTTgcgcaaaaccagcgggTAAAGTagcctGatgga 2234765 2235775 R mglC mglCp2 Sigma70 2235953 2235958 CTGGCG 20 2235927 2235932 TATTAT 2235920 2.164 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgaaCTGGCGaagaaaggcaaggggattatTATTATctcctcTgaaat 2234765 2235775 R mglC mglCp3 Sigma70 2235812 2235817 CTGCGT 18 2235788 2235793 TAAGAT 2235782 2.388 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaattCTGCGTcttgcgtctttgcaccttTAAGATtagggGcttcc 2234765 2235775 R mglC mglCp4 Sigma70 2235907 2235912 CTGAGT 19 2235882 2235887 TATTCT 2235877 2.57 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcCTGAGTtgttagggataacagaccgTATTCTggtcAtgagc 2234765 2235775 R mglC mglCp8 Sigma70 2235953 2235958 CTGGCG 17 2235930 2235935 TATTAT 2235924 3.486 good homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgaaCTGGCGaagaaaggcaaggggatTATTATtatctCctctg 2241932 2242768 F yeiG yeiGp1 Sigma70 2241805 2241810 TTGCCG 16 2241827 2241832 GATGTT 2241838 2.353 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtaaTTGCCGctgcctttcatcagcaGATGTTaaaacAtcgtt 2241932 2242768 F yeiG yeiGp2 Sigma70 2241816 2241821 TTTCAT 21 2241843 2241848 TATGCA 2241854 2.443 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgccTTTCATcagcagatgttaaaacatcgtTATGCAaatacGgaagt 2241932 2242768 F yeiG yeiGp3 Sigma70 2241865 2241870 TTACTC 20 2241891 2241896 TATGAT 2241902 2.554 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaagTTACTCacagcacattgaataaacggTATGATgaagaAattgc 2241932 2242768 F yeiG yeiGp5 Sigma70 2241725 2241730 TTATTA 19 2241750 2241755 TATTGT 2241761 2.86 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaagTTATTAagctgatttacagcctgatTATTGTgcgtgAggcgg 2241932 2242768 F yeiG yeiGp6 Sigma70 2241879 2241884 TTGAAT 15 2241900 2241905 GAAATT 2241910 3.99 good homology 2.35E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacaTTGAATaaacggtatgatgaaGAAATTgcaaAcaaca 2246759 2247640 R yeiE yeiEp1 Sigma70 2247691 2247696 TTAAAA 15 2247670 2247675 TATTTA 2247664 2.65 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTAAAAataaaattgattataTATTTAtaattAatctt 2246759 2247640 R yeiE yeiEp3 Sigma70 2247778 2247783 ATGCCA 21 2247751 2247756 TAAGGT 2247746 2.863 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaATGCCAcagtgtacgatgttgtttctgTAAGGTgataTtcgtc 2246759 2247640 R yeiE yeiEp4 Sigma70 2247696 2247701 CTGGTT 18 2247672 2247677 TATATT 2247667 2.978 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actaaCTGGTTtaaaaataaaattgattaTATATTtataAttaat 2246759 2247640 R yeiE yeiEp6 Sigma70 2247706 2247711 TTACGA 16 2247684 2247689 TAAAAT 2247678 3.573 good homology 7.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTACGActaactggtttaaaaaTAAAATtgattAtatat 2246759 2247640 R yeiE yeiEp7 Sigma70 2247692 2247697 TTTAAA 20 2247666 2247671 TATAAT 2247660 4.994 high homology 2.90E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actggTTTAAAaataaaattgattatatattTATAATtaatcTttata 2247739 2248788 F yeiH yeiHp2 Sigma70 2247647 2247652 TTACCA 21 2247674 2247679 TATATA 2247684 2.683 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTACCActtataaagattaattataaaTATATAatcaAtttta 2247739 2248788 F yeiH yeiHp4 Sigma70 2247663 2247668 TTAATT 19 2247688 2247693 TATTTT 2247700 3.29 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaTTAATTataaatatataatcaatttTATTTTtaaaccAgttag 2247739 2248788 F yeiH yeiHp5 Sigma70 2247647 2247652 TTACCA 15 2247668 2247673 TATAAA 2247679 3.61 good homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTACCActtataaagattaatTATAAAtatatAatcaa 2247739 2248788 F yeiH yeiHp6 Sigma70 2247686 2247691 TTTATT 17 2247709 2247714 TAACCT 2247719 4.256 high homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTTATTtttaaaccagttagtcgTAACCTtatgCccggt 2247739 2248788 F yeiH yeiHp7 Sigma70 2247654 2247659 TTATAA 16 2247676 2247681 TATAAT 2247688 4.343 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTATAAagattaattataaataTATAATcaatttTatttt 2249722 2250810 F yeiI yeiIp1 Sigma70 2249532 2249537 TTGGCA 19 2249557 2249562 TAGCCT 2249568 3.22 good homology 0.000115067 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctTTGGCAgccgcgttgaccgccatcaTAGCCTcggtgAaggca 2255451 2256389 R psuG psuGp1 Sigma70 2256519 2256524 TTGGGT 19 2256494 2256499 GAATCT 2256489 1.96 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtgTTGGGTagacggaatgccgtttgccGAATCTgttcGtttcg 2255451 2256389 R psuG psuGp2 Sigma70 2256499 2256504 TTGCCG 21 2256472 2256477 GATGTT 2256466 2.383 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgtTTGCCGaatctgttcgtttcgcacaggGATGTTcgtcaAtggcg 2255451 2256389 R psuG psuGp3 Sigma70 2256628 2256633 TTTATT 17 2256605 2256610 GAAAGT 2256599 3.736 good homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTTATTacagcgatatcagcggtGAAAGTggctgGtctgc 2257741 2259432 R fruA fruAp1 Sigma70 2259590 2259595 TTGCTG 20 2259564 2259569 CACACT 2259557 1.824 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggcTTGCTGatgcgtgaatccagtgaacaCACACTgcgtctGgcgac 2261885 2263066 F setB setBp1 Sigma70 2261637 2261642 TTTCAG 16 2261659 2261664 TAAAGT 2261670 3.413 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTTCAGcacgcaaggaaagccgTAAAGTtatgaGcaaaa 2261885 2263066 F setB setBp2 Sigma70 2261698 2261703 TTGCCA 20 2261724 2261729 GAAAAT 2261735 4.114 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attttTTGCCAtttttcctaattgctgaTGgGAAAATccgttAtcagc 2261885 2263066 F setB setBp3 Sigma70 2261827 2261832 TTTATT 15 2261848 2261853 TAAACT 2261858 4.47 high homology 2.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctgTTTATTttctgacaagcagcgTAAACTccgcGtcttc 2263063 2263317 R yeiW yeiWp1 Sigma70 2263489 2263494 TTAATT 18 2263465 2263470 GAAAAA 2263459 2.198 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTAATTtcgttcgctcttggcatcGAAAAAttcctGtagtc 2263063 2263317 R yeiW yeiWp4 Sigma70 2263519 2263524 TTGCCG 16 2263497 2263502 TACCTT 2263491 2.683 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagtTTGCCGttgtaattcagtaccaTACCTTttttaAtttcg 2263063 2263317 R yeiW yeiWp5 Sigma70 2263381 2263386 TTGCTG 15 2263360 2263365 TACTGT 2263355 3.37 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cacttTTGCTGgtgcaaaaaaggTGgTACTGTgcgcGctcat 2263063 2263317 R yeiW yeiWp6 Sigma70 2263473 2263478 TTGGCA 19 2263448 2263453 GAAAAT 2263442 3.89 good homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctcTTGGCAtcgaaaaattcctgtagtcGAAAATgtcaaAaatat 2263472 2264044 F yeiP yeiPp1 Sigma70 2263312 2263317 TTCCAT 18 2263336 2263341 TAACCA 2263346 2.098 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTCCATacgttgttctcttaaggtTAACCAccggAttgat 2263472 2264044 F yeiP yeiPp4 Sigma70 2263402 2263407 TTGCCC 17 2263425 2263430 TACTTT 2263436 4.026 high homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTGCCCgaaaggcccgtcgcgagTACTTTgtcgcGatatt 2264267 2265733 F yeiQ yeiQp1 Sigma70 2264159 2264164 TTGATC 20 2264185 2264190 TAACAA 2264196 2.034 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTGATCgccctcacacttcatcgcatTAACAAtccagAccaat 2264267 2265733 F yeiQ yeiQp2 Sigma70 2264222 2264227 TTTACA 21 2264249 2264254 TACTAA 2264260 2.663 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacTTTACActgtcgttgttaattaatcgtTACTAAgacgtGactcc 2264267 2265733 F yeiQ yeiQp3 Sigma70 2264086 2264091 TTTTTA 19 2264111 2264116 TATTTT 2264122 2.72 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccctTTTTTAatttattataccaatcttcTATTTTgcgctTcctga 2264267 2265733 F yeiQ yeiQp6 Sigma70 2264201 2264206 TTTCAA 17 2264224 2264229 TACACT 2264236 5.176 high homology 6.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaTTTCAAttgctgtcatataacttTACACTgtcgttGttaat 2265851 2266837 F yeiR yeiRp1 Sigma70 2265662 2265667 ATCGAA 19 2265687 2265692 TACAAT 2265698 2.21 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggccATCGAAcaagcctggcaacaaatcgTACAATtcggcGcacat 2265851 2266837 F yeiR yeiRp2 Sigma70 2265604 2265609 TTCCCT 16 2265626 2265631 GATGAT 2265637 2.513 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgctTTCCCTgcgtgaagttttcggtGATGATctgccAgataa 2268748 2270304 F rtn rtnp1 Sigma70 2268667 2268672 TTTCCG 15 2268688 2268693 TATAGT 2268700 3.78 good homology 7.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgatgTTTCCGcgtcttgatccaggcTATAGTccggtcAttgtt 2268748 2270304 F rtn rtnp2 Sigma70 2268710 2268715 TTTAAA 17 2268733 2268738 GAAATT 2268744 4.016 high homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctTTTAAAtgttgtcgtaatttcagGAAATTaacggAatcat 2268748 2270304 F rtn rtnp3 Sigma70 2268701 2268706 TTGTTA 17 2268724 2268729 TAATTT 2268735 4.506 high homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtcaTTGTTAtcttttaaatgttgtcgTAATTTcaggaAattaa 2275915 2276259 R yejG yejGp1 Sigma70 2276317 2276322 TTGATG 21 2276290 2276295 CAAATT 2276284 2.233 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgTTGATGatgtgttaaaattgatgtaaaCAAATTgtgaaGtgaat 2275915 2276259 R yejG yejGp2 Sigma70 2276483 2276488 ATGTAA 19 2276458 2276463 TAAAAA 2276452 2.26 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttATGTAAaaagtcacatcattgtagtTAAAAAggttgAgttag 2275915 2276259 R yejG yejGp3 Sigma70 2276343 2276348 TTTACG 15 2276322 2276327 GATTGT 2276316 2.31 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatcTTTACGatctgtataaagacgGATTGTtgatgAtgtgt 2275915 2276259 R yejG yejGp4 Sigma70 2276331 2276336 ATAAAG 20 2276305 2276310 TAAAAT 2276300 2.394 poor homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tctgtATAAAGacggattgttgatgatgTGtTAAAATtgatGtaaac 2275915 2276259 R yejG yejGp6 Sigma70 2276501 2276506 TTTATG 15 2276480 2276485 TAAAAA 2276474 2.73 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTTATGtaaaatcaatttatgTAAAAAgtcacAtcatt 2275915 2276259 R yejG yejGp9 Sigma70 2276317 2276322 TTGATG 17 2276294 2276299 TAAACA 2276289 4.376 high homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgTTGATGatgtgttaaaattgatgTAAACAaattGtgaag 2276592 2277782 R bcr bcrp1 Sigma70 2277873 2277878 CTGGAT 21 2277846 2277851 TATCGT 2277840 2.093 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttacgCTGGATgctgatttagcccccggtgaaTATCGTccgttAactga 2276592 2277782 R bcr bcrp2 Sigma70 2277903 2277908 CTGCAT 20 2277877 2277882 TACGCT 2277872 2.174 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgagCTGCATcgtgaacgtattggcggtatTACGCTggatGctgat 2276592 2277782 R bcr bcrp3 Sigma70 2277975 2277980 CTGACC 15 2277954 2277959 TATCAT 2277948 2.75 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgtCTGACCatcagcgaagggcgtTATCATcaggtGaaacg 2277810 2278505 R rsuA rsuAp2 Sigma70 2278600 2278605 TTCCCT 21 2278573 2278578 TATACT 2278567 4.373 high homology 1.94E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctttTTCCCTtgagggatgttattagaccgcTATACTgggcaGacaac 2280539 2280823 F rplY rplYp2 Sigma70 2280427 2280432 TTGATG 19 2280452 2280457 GAATCT 2280463 2.92 poor homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaTTGATGtataaggcgattgagtataGAATCTcgcccGctttt 2280539 2280823 F rplY rplYp3 Sigma70 2280423 2280428 TTGATT 16 2280445 2280450 GAGTAT 2280455 3.113 poor homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagttTTGATTgatgtataaggcgattGAGTATagaaTctcgc 2280539 2280823 F rplY rplYp4 Sigma70 2280496 2280501 TTGCTG 18 2280520 2280525 TAATTT 2280531 3.718 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctgTTGCTGggtcgcctgtagcaggatTAATTTaagagAgaaag 2280539 2280823 F rplY rplYp5 Sigma70 2280423 2280428 TTGATT 19 2280448 2280453 TATAGA 2280459 3.81 good homology 4.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagttTTGATTgatgtataaggcgattgagTATAGAatctcGcccgc 2280539 2280823 F rplY rplYp6 Sigma70 2280423 2280428 TTGATT 21 2280450 2280455 TAGAAT 2280460 4.923 high homology 1.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagttTTGATTgatgtataaggcgattgagtaTAGAATctcgCccgct 2280962 2281969 R yejK yejKp2 Sigma70 2282080 2282085 TTTTAT 18 2282056 2282061 TACGCT 2282049 2.968 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcttTTTTATgcgttaaatcattctcgtTACGCTgccttcTgtaaa 2280962 2281969 R yejK yejKp3 Sigma70 2282063 2282068 TTCTCG 15 2282042 2282047 TAAAAT 2282037 3.3 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTCTCGttacgctgccttctgTAAAATgaccGccatc 2282151 2282378 F yejL yejLp4 Sigma70 2281949 2281954 CTGGTT 17 2281972 2281977 TAAACT 2281984 3.876 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcaatCTGGTTgatatccagactcaTGaTAAACTctccttTaagac 2287087 2288103 R insH insHp1 Sigma70 2288217 2288222 TTTCAT 20 2288191 2288196 CAATCT 2288184 1.484 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTTCATaggatgaaagctcaatgcatCAATCTggttctGtttct 2287087 2288103 R insH insHp2 Sigma70 2288233 2288238 TTTTAA 15 2288212 2288217 TAGGAT 2288207 2.87 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcTTTTAAcagcaattaatttcaTAGGATgaaaGctcaa 2289380 2290432 R ccmH ccmHp2 Sigma70 2290468 2290473 ATCAAG 15 2290447 2290452 TACAGT 2290441 1.89 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagagATCAAGccgctgtgggagaaaTACAGTaaggaGgccgc 2301927 2302415 F eco ecop1 Sigma70 2301836 2301841 TTCATA 21 2301863 2301868 GAATAT 2301873 2.783 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttaTTCATAaagcaaattaataaatctgatGAATATgttaAccttc 2301927 2302415 F eco ecop2 Sigma70 2301731 2301736 TTTATA 19 2301756 2301761 GATATT 2301768 2.93 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atataTTTATAtagcgattgattcaccagaGATATTtctgctGgtttg 2301927 2302415 F eco ecop3 Sigma70 2301813 2301818 TTGTCT 15 2301834 2301839 TATTCA 2301844 3.18 good homology 0.000220415 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTGTCTgaatgttctttaagtTATTCAtaaaGcaaat 2301927 2302415 F eco ecop4 Sigma70 2301849 2301854 TTAATA 16 2301871 2301876 TAACCT 2301882 3.353 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcaaaTTAATAaatctgatgaataTGtTAACCTtcagcGacatc 2301927 2302415 F eco ecop5 Sigma70 2301782 2301787 TTAGAA 20 2301808 2301813 TAAAAT 2301819 3.834 good homology 3.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctcaTTAGAAtttaacactaaaagagcaggTAAAATtgtctGaatgt 2301927 2302415 F eco ecop6 Sigma70 2301760 2301765 TTTCTG 17 2301783 2301788 TAGAAT 2301794 4.036 high homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTTCTGctggtttgctctctcatTAGAATttaacActaaa 2303130 2304776 R mqo mqop2 Sigma70 2304928 2304933 TTTCTA 21 2304901 2304906 GAAATT 2304895 2.443 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcaTTTCTAataaccctataattaatcaacGAAATTataatGtttct 2303130 2304776 R mqo mqop5 Sigma70 2304910 2304915 TTAATC 19 2304885 2304890 TAAAAT 2304880 3.63 good homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tataaTTAATCaacgaaattataatgtttcTAAAATtagaAtataa 2303130 2304776 R mqo mqop6 Sigma70 2304856 2304861 TTTAAA 17 2304833 2304838 TACCGT 2304828 4.056 high homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cattaTTTAAAtgttgttacttaagTGtTACCGTtgatGccgcg 2303130 2304776 R mqo mqop8 Sigma70 2304897 2304902 TTATAA 17 2304874 2304879 TATAAT 2304868 5.346 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaaaTTATAAtgtttctaaaattagaaTATAATttataAacatt 2308501 2309556 R apbE apbEp3 Sigma70 2309675 2309680 TTACCA 17 2309652 2309657 TATCGA 2309646 2.836 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctggtTTACCAgttctaatctcgatTGaTATCGAacaaaGggcct 2315049 2317898 R rcsC rcsCp1 Sigma70 2318014 2318019 TTAAGG 19 2317989 2317994 TATCAT 2317983 2.27 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaggTTAAGGtgatgatttctcggcggtgTATCATattccAgagaa 2315049 2317898 R rcsC rcsCp2 Sigma70 2318073 2318078 TTCATA 20 2318047 2318052 TAGTCT 2318041 2.824 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccacTTCATAtaatgcatgctgaaatccacTAGTCTtgtccGgtata 2325389 2326165 R yfaP yfaPp1 Sigma70 2326354 2326359 TTGCCG 19 2326329 2326334 TATACC 2326323 2.22 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggtTTGCCGtttagtctcaggtttccccTATACCgatcgGcagca 2338439 2342191 R yfaL yfaLp2 Sigma70 2342226 2342231 TTAAAT 19 2342201 2342206 GATGGT 2342194 2.36 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgaTTAAATacgccgtcttatagaaaatGATGGTtagattAatatg 2338439 2342191 R yfaL yfaLp4 Sigma70 2342409 2342414 TTTACC 17 2342386 2342391 TATTCA 2342379 3.156 good homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaTTTACCttatattataagaaaatTATTCAtgacttTaattt 2338439 2342191 R yfaL yfaLp5 Sigma70 2342271 2342276 TTGAAC 15 2342250 2342255 GATATT 2342245 3.56 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgggTTGAACaatttacaaaagaaaGATATTccatAtcgta 2338439 2342191 R yfaL yfaLp6 Sigma70 2342263 2342268 TTTACA 16 2342241 2342246 TATCGT 2342235 3.603 good homology 0.000115067 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTTACAaaagaaagatattccaTATCGTataatGcgatt 2338439 2342191 R yfaL yfaLp7 Sigma70 2342336 2342341 TTAACT 18 2342312 2342317 TATTAT 2342306 4.758 high homology 3.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggttaTTAACTtgaattatgacgcacTGaTATTATtcatcAaataa 2338439 2342191 R yfaL yfaLp8 Sigma70 2342263 2342268 TTTACA 21 2342236 2342241 TATAAT 2342229 5.253 high homology 3.80E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTTACAaaagaaagatattccatatcgTATAATgcgattAaatac 2346536 2346790 F yfaE yfaEp1 Sigma70 2346331 2346336 TTGAAT 16 2346353 2346358 TATGCA 2346363 3.713 good homology 2.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtacgTTGAATacatcaccaatatccgTATGCAggcaGtcggt 2347957 2349033 R glpQ glpQp1 Sigma70 2349130 2349135 TTGGCG 16 2349108 2349113 TATCTT 2349103 2.863 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTGGCGgcagcattctggcggtTATCTTgttgAttgtt 2347957 2349033 R glpQ glpQp2 Sigma70 2349101 2349106 TTGATT 15 2349080 2349085 GAAAAA 2349075 3.08 poor homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttgTTGATTgttgtgatgattggcGAAAAAcgtcGccatg 2354926 2355825 F yfaD yfaDp1 Sigma70 2354800 2354805 ATGTAT 15 2354821 2354826 GAAAAT 2354833 2.46 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcccaATGTATgcgttgcaacgcagtGAAAATtcctctGaaaac 2354926 2355825 F yfaD yfaDp2 Sigma70 2354704 2354709 ATTACG 21 2354731 2354736 TAAACT 2354743 2.543 poor homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccgATTACGctactggcccaggcgctggctTAAACTcctttcTgatgc 2354926 2355825 F yfaD yfaDp3 Sigma70 2354831 2354836 CTGAAA 16 2354853 2354858 GAAACT 2354864 2.933 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcctCTGAAAacgtctcgcaaaggctGAAACTggcagAtgtca 2354926 2355825 F yfaD yfaDp4 Sigma70 2354864 2354869 ATGTCA 17 2354887 2354892 TAATGT 2354899 3.516 good homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcagATGTCAaaggcctgggataaccgTAATGTcgcgtcAtcata 2356064 2356867 R rhmA rhmAp3 Sigma70 2356998 2357003 TTGCCA 19 2356973 2356978 GACGCT 2356968 2.99 poor homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttatTTGCCAgcgatgcggcgggattactGACGCTggcaGcggtg 2361755 2362297 R yfaZ yfaZp1 Sigma70 2362465 2362470 TTTTTG 21 2362438 2362443 TATTTT 2362433 2.053 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTTTTGtgtgtatcgataaagtgtgttTATTTTttcgGcattt 2361755 2362297 R yfaZ yfaZp3 Sigma70 2362493 2362498 TTTGCG 17 2362470 2362475 TATTAT 2362465 4.146 high homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctctTTTGCGatgataactgtacttatTATTATttttGtgtgt 2361755 2362297 R yfaZ yfaZp4 Sigma70 2362425 2362430 TTTAAT 19 2362400 2362405 TACAAT 2362394 4.4 high homology 2.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTTAATtatttaagaagtatttagtTACAATaagtgActaga 2361755 2362297 R yfaZ yfaZp5 Sigma70 2362367 2362372 TTGAAT 16 2362345 2362350 TACAAT 2362339 5.473 high homology 2.24E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcaTTGAATcctctgtgccaggcagTACAATcccgcAgcttt 2362576 2363001 F nudI nudIp1 Sigma70 2362418 2362423 TTAAAT 18 2362442 2362447 TAAACA 2362454 3.528 good homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttcTTAAATaattaaatgccgaaaaaaTAAACAcactttAtcgat 2362576 2363001 F nudI nudIp3 Sigma70 2362515 2362520 TTCACA 16 2362537 2362542 TATTCT 2362547 4.283 high homology 3.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcactTTCACAtatttgtgagttaccgTATTCTcatgGtttct 2363040 2363642 R ais aisp1 Sigma70 2363860 2363865 TTTAAG 21 2363833 2363838 TAAGAA 2363828 2.093 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatTTTAAGgatagaatattaacttaacctTAAGAAactaAtatta 2363040 2363642 R ais aisp2 Sigma70 2363790 2363795 TTTCTT 19 2363765 2363770 CAAAAT 2363759 2.19 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatttTTTCTTatttaggctttgcattTGgCAAAATtttgaGgcatt 2363040 2363642 R ais aisp4 Sigma70 2363807 2363812 TTGAAA 16 2363785 2363790 TATTTA 2363778 3.593 good homology 1.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGAAAtttttatattttttctTATTTAggctttGcattt 2363040 2363642 R ais aisp6 Sigma70 2363820 2363825 TTAGAC 17 2363797 2363802 TATATT 2363790 3.746 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTAGACgtaaatattgaaattttTATATTttttctTattta 2363040 2363642 R ais aisp7 Sigma70 2363807 2363812 TTGAAA 20 2363781 2363786 TAGGCT 2363776 4.064 high homology 5.08E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGAAAtttttatattttttcttattTAGGCTttgcAtttgg 2363040 2363642 R ais aisp8 Sigma70 2363748 2363753 TTGCCG 15 2363727 2363732 TAATAT 2363720 4.5 high homology 4.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTGCCGacatcgtaggattttTAATATtacaccAactgc 2363950 2365089 F arnB arnBp3 Sigma70 2363835 2363840 CTTAAG 21 2363862 2363867 TAAAAT 2363872 2.633 poor homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtttCTTAAGgttaagttaatattctatcctTAAAATttcgCtccaa 2363950 2365089 F arnB arnBp4 Sigma70 2363901 2363906 TTTATA 19 2363926 2363931 TATTCA 2363937 2.79 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactcTTTATAgcaaatataagtggacaggTATTCAatggcGgaagg 2363950 2365089 F arnB arnBp5 Sigma70 2363815 2363820 TTTACG 16 2363837 2363842 TAAGGT 2363849 2.813 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTTACGtctaatattagtttctTAAGGTtaagttAatatt 2363950 2365089 F arnB arnBp6 Sigma70 2363861 2363866 TTAAAA 15 2363882 2363887 CAAAAT 2363892 3.12 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatccTTAAAAtttcgctccaaaTGgCAAAATatacAcaaca 2363950 2365089 F arnB arnBp8 Sigma70 2363861 2363866 TTAAAA 20 2363887 2363892 TATACA 2363897 3.304 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatccTTAAAAtttcgctccaaatggcaaaaTATACAcaacActctt 2363950 2365089 F arnB arnBp9 Sigma70 2363832 2363837 TTTCTT 18 2363856 2363861 TATCCT 2363866 3.648 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attagTTTCTTaaggttaagttaatattcTATCCTtaaaAtttcg 2363950 2365089 F arnB arnBp11 Sigma70 2363800 2363805 ATAAAA 17 2363823 2363828 TAATAT 2363834 3.916 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatATAAAAatttcaatatttacgtcTAATATtagttTcttaa 2363950 2365089 F arnB arnBp13 Sigma70 2363828 2363833 TTAGTT 17 2363851 2363856 TATTCT 2363863 4.176 high homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTAGTTtcttaaggttaagttaaTATTCTatccttAaaatt 2371294 2371560 R pmrD pmrDp1 Sigma70 2371638 2371643 CTGCCA 15 2371617 2371622 TAAAGA 2371612 2.21 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence catttCTGCCAttccattgccgtTGaTAAAGAgtttAtctgt 2371294 2371560 R pmrD pmrDp3 Sigma70 2371627 2371632 TTGCCG 20 2371601 2371606 TAATCT 2371596 3.814 good homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttccaTTGCCGttgataaagagtttatcTGtTAATCTgtaaAttgat 2371294 2371560 R pmrD pmrDp4 Sigma70 2371621 2371626 TTGATA 21 2371594 2371599 TAAATT 2371588 4.963 high homology 1.09E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgTTGATAaagagtttatctgttaatctgTAAATTgatgtGaaaac 2379104 2379565 R elaA elaAp2 Sigma70 2379705 2379710 TTGCAG 18 2379681 2379686 GACATT 2379676 3.008 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggatgTTGCAGgttaagcaatattgccgtGACATTgcgcGtgcgg 2379104 2379565 R elaA elaAp3 Sigma70 2379664 2379669 TTGGCA 16 2379642 2379647 TAAAAA 2379636 3.783 good homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgggTTGGCAcaccggctgaagtaccTAAAAAaattaAttcca 2379630 2380547 F rbn rbnp1 Sigma70 2379577 2379582 TTTAGA 20 2379603 2379608 GAATAT 2379614 1.864 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcctTTTAGAtgtatgccttatactagccgGAATATtttttGaaacg 2379630 2380547 F rbn rbnp2 Sigma70 2379582 2379587 ATGTAT 18 2379606 2379611 TATTTT 2379617 2.848 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttagATGTATgccttatactagccggaaTATTTTttgaaAcgtga 2379630 2380547 F rbn rbnp4 Sigma70 2379567 2379572 ATGCTC 19 2379592 2379597 TATACT 2379603 3.08 poor homology 7.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataATGCTCtccttttagatgtatgcctTATACTagccgGaatat 2380735 2381946 F elaD elaDp1 Sigma70 2380536 2380541 TTTAAC 16 2380558 2380563 TATTAA 2380569 2.453 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgTTTAACgtttaactctgcttatTATTAAaaacaGggcga 2380735 2381946 F elaD elaDp2 Sigma70 2380578 2380583 TTGCCC 18 2380602 2380607 TACATA 2380613 2.588 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaacTTGCCCtgttatcgcaacccgcgcTACATAtatccAcccac 2380735 2381946 F elaD elaDp3 Sigma70 2380536 2380541 TTTAAC 19 2380561 2380566 TAAAAA 2380571 2.65 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgTTTAACgtttaactctgcttattatTAAAAAcaggGcgaaa 2380735 2381946 F elaD elaDp6 Sigma70 2380645 2380650 TTTATT 17 2380668 2380673 TATTCA 2380679 3.656 good homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTTATTcatctccttacgcactaTATTCAgagcaAtaagt 2380735 2381946 F elaD elaDp8 Sigma70 2380639 2380644 TTGATA 21 2380666 2380671 TATATT 2380676 5.253 high homology 5.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGATAtttattcatctccttacgcacTATATTcagaGcaata 2382017 2383744 R yfbK yfbKp1 Sigma70 2383839 2383844 TTTGCT 16 2383817 2383822 TATTTT 2383811 2.903 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTTGCTatgggtttcgatattgTATTTTattaaGattag 2382017 2383744 R yfbK yfbKp2 Sigma70 2383820 2383825 TTGTAT 20 2383794 2383799 TATACA 2383789 3.344 good homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTGTATtttattaagattagcaggatTATACAaagaGtatat 2382017 2383744 R yfbK yfbKp3 Sigma70 2383838 2383843 TTGCTA 20 2383812 2383817 TATTAA 2383806 3.464 good homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTGCTAtgggtttcgatattgtatttTATTAAgattaGcagga 2382017 2383744 R yfbK yfbKp4 Sigma70 2383804 2383809 TTAGCA 15 2383783 2383788 TATATT 2383778 3.74 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaTTAGCAggattatacaaagagTATATTttatGtctgg 2382017 2383744 R yfbK yfbKp5 Sigma70 2383804 2383809 TTAGCA 17 2383781 2383786 TATTTT 2383774 4.016 high homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaTTAGCAggattatacaaagagtaTATTTTatgtctGgtgcc 2382017 2383744 R yfbK yfbKp6 Sigma70 2383820 2383825 TTGTAT 17 2383797 2383802 GATTAT 2383791 4.476 high homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTGTATtttattaagattagcagGATTATacaaaGagtat 2383882 2384853 F yfbL yfbLp1 Sigma70 2383847 2383852 ATGATT 16 2383869 2383874 TAATAA 2383880 2.123 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataATGATTcaacaacgcaacccatTAATAAtttgcAtatga 2383882 2384853 F yfbL yfbLp5 Sigma70 2383734 2383739 TTATTT 21 2383761 2383766 TAAACT 2383772 3.363 good homology 9.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTATTTcgcatataaaatccttttaaaTAAACTcaggcAccaga 2383882 2384853 F yfbL yfbLp9 Sigma70 2383755 2383760 TTTAAA 19 2383780 2383785 TAAAAT 2383791 4.96 high homology 7.89E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcctTTTAAAtaaactcaggcaccagacaTAAAATatactCtttgt 2383882 2384853 F yfbL yfbLp10 Sigma70 2383793 2383798 TTGTAT 17 2383816 2383821 TAAAAT 2383827 5.966 high homology 9.64E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actctTTGTATaatcctgctaatcttaaTAAAATacaatAtcgaa 2384956 2385459 F yfbM yfbMp1 Sigma70 2384825 2384830 TTATAA 20 2384851 2384856 TAATAA 2384862 1.794 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtgTTATAActttgttatacaacagtaaaTAATAAaaattTctcga 2384956 2385459 F yfbM yfbMp2 Sigma70 2384722 2384727 ATGATT 20 2384748 2384753 TAATAA 2384759 1.804 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccataATGATTactgacaccgctttttatcgTAATAAacaatAccact 2384956 2385459 F yfbM yfbMp4 Sigma70 2384897 2384902 TTTATT 15 2384918 2384923 TAAGAT 2384929 3.86 good homology 0.00012341 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacatTTTATTttccctcatctgtttTAAGATgcgaaAcatga 2385732 2386448 R yfbN yfbNp2 Sigma70 2386483 2386488 TTGTTA 16 2386461 2386466 TATTTA 2386455 2.413 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacgTTGTTAtatttaatatcataaaTATTTAaagggGtttga 2385732 2386448 R yfbN yfbNp3 Sigma70 2386541 2386546 ATGAAT 21 2386514 2386519 TATTCA 2386508 2.553 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacATGAATgttaagcaggaaaacgtgagaTATTCAgtcagGccggg 2385732 2386448 R yfbN yfbNp4 Sigma70 2386541 2386546 ATGAAT 19 2386516 2386521 GATATT 2386510 2.6 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ataacATGAATgttaagcaggaaaacgTGaGATATTcagtcAggccg 2385732 2386448 R yfbN yfbNp5 Sigma70 2386494 2386499 TTATCC 15 2386473 2386478 TAATAT 2386467 2.65 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtcgTTATCCagacgttgttatattTAATATcataaAtattt 2385732 2386448 R yfbN yfbNp6 Sigma70 2386678 2386683 TTGGGT 18 2386654 2386659 CATAAT 2386648 2.718 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acaagTTGGGTaatgcgttctaaaggTGtCATAATtattcCctgaa 2385732 2386448 R yfbN yfbNp7 Sigma70 2386591 2386596 ATAAAT 17 2386568 2386573 TATTAT 2386561 4.006 good homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcagATAAATagtgacaattccatacgTATTATtagtttCaagag 2385732 2386448 R yfbN yfbNp8 Sigma70 2386607 2386612 TTGAAT 19 2386582 2386587 GACAAT 2386576 4.19 high homology 1.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgtTTGAATtcattagcagataaatagtGACAATtccatAcgtat 2386657 2387079 F yfbO yfbOp2 Sigma70 2386460 2386465 TTAAAT 17 2386483 2386488 TAACAA 2386494 3.276 good homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccctTTAAATatttatgatattaaataTAACAAcgtctGgataa 2386657 2387079 F yfbO yfbOp3 Sigma70 2386536 2386541 TTAACA 19 2386561 2386566 GAAACT 2386571 3.34 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgcTTAACAttcatgttatgatgctcttGAAACTaataAtacgt 2386657 2387079 F yfbO yfbOp4 Sigma70 2386513 2386518 CTGAAT 18 2386537 2386542 TAACAT 2386547 3.498 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaCTGAATatctcacgttttcctgctTAACATtcatGttatg 2386657 2387079 F yfbO yfbOp5 Sigma70 2386443 2386448 TTCCAT 20 2386469 2386474 TATGAT 2386480 3.504 good homology 8.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTCCATgtcaaacccctttaaatattTATGATattaaAtataa 2386657 2387079 F yfbO yfbOp6 Sigma70 2386528 2386533 TTTCCT 15 2386549 2386554 TATGAT 2386561 4.08 high homology 7.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cacgtTTTCCTgcttaacattcaTGtTATGATgctcttGaaact 2387135 2387986 F yfbP yfbPp1 Sigma70 2387089 2387094 ATAAAC 19 2387114 2387119 TAAATT 2387125 1.7 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatATAAACagataagcggatgtttacaTAAATTtttatGtgaag 2387135 2387986 F yfbP yfbPp2 Sigma70 2386888 2386893 TTCGAT 21 2386915 2386920 GAAAGT 2386926 2.123 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgatgTTCGATgacccagactggccctttagtGAAAGTattttAgttat 2387135 2387986 F yfbP yfbPp3 Sigma70 2387064 2387069 TTGTTG 16 2387086 2387091 TATATA 2387097 2.203 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttacTTGTTGgtgggattaaaacattTATATAaacagAtaagc 2387135 2387986 F yfbP yfbPp5 Sigma70 2387067 2387072 TTGGTG 15 2387088 2387093 TATAAA 2387099 3.27 good homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttgTTGGTGggattaaaacatttaTATAAAcagatAagcgg 2387135 2387986 F yfbP yfbPp6 Sigma70 2387067 2387072 TTGGTG 17 2387090 2387095 TAAACA 2387101 3.616 good homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttgTTGGTGggattaaaacatttataTAAACAgataaGcggat 2388070 2389527 R nuoN nuoNp1 Sigma70 2389767 2389772 TTGCAT 16 2389745 2389750 GATGTT 2389739 3.003 poor homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtctTTGCATctgtttattcgctggcGATGTTacatcGcgctt 2405583 2406800 F alaA alaAp2 Sigma70 2405368 2405373 TTAAGA 19 2405393 2405398 TAACAT 2405404 2.74 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTAAGAatcagaacaattcactataTAACATtgcatGtaaag 2405583 2406800 F alaA alaAp3 Sigma70 2405362 2405367 TTACAA 21 2405389 2405394 TATATA 2405400 2.773 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagacTTACAAttaagaatcagaacaattcacTATATAacattGcatgt 2405583 2406800 F alaA alaAp4 Sigma70 2405428 2405433 TTGTCA 18 2405452 2405457 CACAAT 2405462 3.138 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTGTCAttattaagttattaacagCACAATcgagCcttcc 2405583 2406800 F alaA alaAp5 Sigma70 2405341 2405346 TTACAG 16 2405363 2405368 TACAAT 2405374 3.513 good homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTACAGataaaaaaaccagactTACAATtaagaAtcaga 2405583 2406800 F alaA alaAp7 Sigma70 2405398 2405403 TTGCAT 20 2405424 2405429 TATTTT 2405436 4.164 high homology 2.10E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacaTTGCATgtaaagcatatacacctcatTATTTTgtcattAttaag 2405583 2406800 F alaA alaAp8 Sigma70 2405496 2405501 TTCAAA 17 2405519 2405524 TACATT 2405530 4.696 high homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaccTTCAAAacaccgtcctgggggagTACATTgttctAagctg 2406884 2407483 F yfbR yfbRp1 Sigma70 2406778 2406783 TTTCTG 20 2406804 2406809 TAATTT 2406814 1.994 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttccTTTCTGgttatcatcagctgtaatctTAATTTcactGccgga 2406884 2407483 F yfbR yfbRp2 Sigma70 2406765 2406770 TTCGCG 15 2406786 2406791 TATCAT 2406797 2.63 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaagTTCGCGcgtttcctttctggtTATCATcagctGtaatc 2406884 2407483 F yfbR yfbRp4 Sigma70 2406822 2406827 TTGCAT 18 2406846 2406851 CACAAT 2406857 3.608 good homology 8.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagaTTGCATccggcagcgttatcccgcCACAATgacctGatgat 2406884 2407483 F yfbR yfbRp5 Sigma70 2406773 2406778 TTTCCT 19 2406798 2406803 TAATCT 2406810 3.62 good homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcgTTTCCTttctggttatcatcagctgTAATCTtaatttCactgc 2407542 2409374 R yfbS yfbSp1 Sigma70 2409524 2409529 TTGGTC 20 2409498 2409503 TACTGT 2409492 2.254 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgatTTGGTCctccacagtctggagcaaatTACTGTgaccaAacagc 2409461 2410111 R yfbT yfbTp1 Sigma70 2410306 2410311 TTACCT 21 2410279 2410284 TAATGT 2410273 3.263 good homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgTTACCTcggttatgtccgctttatggtTAATGTggaagGgcgct 2409461 2410111 R yfbT yfbTp2 Sigma70 2410306 2410311 TTACCT 15 2410285 2410290 TATGGT 2410280 3.43 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgTTACCTcggttatgtccgcttTATGGTtaatGtggaa 2410699 2411154 R yfbV yfbVp1 Sigma70 2411201 2411206 TTGTGA 16 2411179 2411184 GAATCT 2411174 2.123 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgagTTGTGAatttgcacaaatttttGAATCTttatAtgtga 2410699 2411154 R yfbV yfbVp2 Sigma70 2411221 2411226 TTGAAC 18 2411197 2411202 GAATTT 2411191 2.938 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atgttTTGAACgttgtcccgctgagtTGtGAATTTgcacaAatttt 2410699 2411154 R yfbV yfbVp3 Sigma70 2411333 2411338 TTTTCA 17 2411310 2411315 TATGAA 2411305 3.156 good homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtaaTTTTCAgccaatggcataatgtaTATGAAtttgAcgact 2410699 2411154 R yfbV yfbVp4 Sigma70 2411357 2411362 TTGAGT 15 2411336 2411341 TAATTT 2411329 3.59 good homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatcTTGAGTctatgccattttgcgTAATTTtcagccAatggc 2410699 2411154 R yfbV yfbVp5 Sigma70 2411341 2411346 TTGCGT 18 2411317 2411322 TAATGT 2411311 3.768 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattTTGCGTaattttcagccaatggcaTAATGTatatgAatttg 2415103 2416623 F yfcC yfcCp1 Sigma70 2414885 2414890 CTGCGA 20 2414911 2414916 TAATCT 2414921 1.934 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaCTGCGAttcagtctgcacagcagcagTAATCTcgtcAtcatc 2415103 2416623 F yfcC yfcCp2 Sigma70 2414989 2414994 TTAATT 19 2415014 2415019 TATCTT 2415025 2.79 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcTTAATTtgcattaatcctttctgatTATCTTgcttaActgcg 2415103 2416623 F yfcC yfcCp3 Sigma70 2414989 2414994 TTAATT 16 2415011 2415016 GATTAT 2415021 2.923 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcTTAATTtgcattaatcctttctGATTATcttgCttaac 2415103 2416623 F yfcC yfcCp4 Sigma70 2415039 2415044 ATGAAT 17 2415062 2415067 CATACT 2415072 3.506 good homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaATGAATtgcgccatcccactttgCATACTtaccActttg 2415103 2416623 F yfcC yfcCp5 Sigma70 2415067 2415072 TTACCA 17 2415090 2415095 GAATAT 2415100 3.766 good homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catacTTACCActttgttttgtgcaaggGAATATttgcGctatg 2417863 2418507 R yfcF yfcFp2 Sigma70 2418623 2418628 TTTAAT 19 2418598 2418603 TAGAAA 2418592 2.74 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttgTTTAATcatctgaacaccacaagtaTAGAAAgcgcgGcgact 2417863 2418507 R yfcF yfcFp4 Sigma70 2418563 2418568 GTGACA 15 2418542 2418547 TATAGT 2418536 3.33 good homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcacGTGACAgtgacaaaaaggctcTATAGTttgatAgccag 2417863 2418507 R yfcF yfcFp6 Sigma70 2418623 2418628 TTTAAT 17 2418600 2418605 TATAGA 2418595 4.176 high homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttgTTTAATcatctgaacaccacaagTATAGAaagcGcggcg 2418643 2419290 F yfcG yfcGp1 Sigma70 2418556 2418561 TTGTCA 15 2418577 2418582 TACTCA 2418588 2.74 poor homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctttTTGTCActgtcacgtgacgaaTACTCAcgtaaGtcgcc 2418643 2419290 F yfcG yfcGp2 Sigma70 2418598 2418603 TTTCTA 15 2418619 2418624 GATGAT 2418630 2.84 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcTTTCTAtacttgtggtgttcaGATGATtaaacAaccgg 2418643 2419290 F yfcG yfcGp3 Sigma70 2418598 2418603 TTTCTA 21 2418625 2418630 TAAACA 2418636 2.863 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcTTTCTAtacttgtggtgttcagatgatTAAACAaccggAgctgc 2420671 2421561 R yfcI yfcIp1 Sigma70 2421752 2421757 TTTCCT 21 2421725 2421730 GAGTAT 2421720 2.063 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTTCCTctccggtggctaacgctgccgGAGTATtttcAtgggg 2420671 2421561 R yfcI yfcIp2 Sigma70 2421776 2421781 TTCCTT 15 2421755 2421760 TAATTT 2421748 2.86 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacggTTCCTTaagggatcgctgaaaTAATTTcctctcCggtgg 2420671 2421561 R yfcI yfcIp3 Sigma70 2421689 2421694 CTGAAA 19 2421664 2421669 TAAAAA 2421657 2.91 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccgCTGAAAtgtaaaagttacagtccgcTAAAAAtacttcTgaatt 2420671 2421561 R yfcI yfcIp4 Sigma70 2421608 2421613 TTAATC 21 2421581 2421586 TAAATT 2421575 2.933 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtgTTAATCgtggttattgtcgcgtcatctTAAATTtgaggGgtgac 2420671 2421561 R yfcI yfcIp6 Sigma70 2421620 2421625 CTGCAT 17 2421597 2421602 TATTGT 2421590 4.056 high homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctgCTGCATtgggtgttaatcgtggtTATTGTcgcgtcAtctta 2421758 2422531 R hisP hisPp2 Sigma70 2422719 2422724 TTTACT 20 2422693 2422698 GAAAAT 2422687 3.194 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTTACTgccacggtgccggatctgctGAAAATagcccGcgata 2429044 2429706 R dedD dedDp3 Sigma70 2429927 2429932 TTGAAA 18 2429903 2429908 TATTGT 2429897 5.608 high homology 1.93E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cctggTTGAAAagcgtggttgatgacTGgTATTGTgcgccActgga 2436964 2438142 R yfcJ yfcJp1 Sigma70 2438198 2438203 CTGAAA 18 2438174 2438179 GATACT 2438169 3.618 good homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaccCTGAAAccagagagatgagacgggGATACTcctcGccttg 2436964 2438142 R yfcJ yfcJp2 Sigma70 2438292 2438297 TTGACA 18 2438268 2438273 CAAACT 2438263 4.168 high homology 1.74E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaTTGACAatcgccgccagttccaggCAAACTtcccGctttg 2439786 2441792 F mnmC mnmCp1 Sigma70 2439712 2439717 TTTAAT 19 2439737 2439742 TACACA 2439747 2.81 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccaTTTAATagagaaatttgcgcagcctTACACAcatcGctaag 2439786 2441792 F mnmC mnmCp3 Sigma70 2439726 2439731 TTGCGC 17 2439749 2439754 TAAGAT 2439761 3.946 good homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatTTGCGCagccttacacacatcgcTAAGATcgagccAccgcc 2441913 2442191 R yfcL yfcLp5 Sigma70 2442300 2442305 TTCATT 15 2442279 2442284 TATTAT 2442273 4.23 high homology 5.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgcTTCATTaaagcactacaaaatTATTATcacacGccgga 2446628 2447179 F yfcN yfcNp1 Sigma70 2446533 2446538 TTCACG 19 2446558 2446563 TACGTT 2446568 1.97 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaTTCACGcgcggtgagtgaggaaaaaTACGTTtaaaAcgatc 2446628 2447179 F yfcN yfcNp2 Sigma70 2446571 2446576 ATCGAT 16 2446593 2446598 TAAACT 2446604 2.213 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaacgATCGATtgcgctacgagtcgggTAAACTgtaggAaaatt 2446628 2447179 F yfcN yfcNp3 Sigma70 2446431 2446436 TTTACT 19 2446456 2446461 TATCCA 2446466 2.31 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcaTTTACTgcttcatcaacgaaaatttTATCCAcgtaTtcctc 2446628 2447179 F yfcN yfcNp6 Sigma70 2446421 2446426 TTGCAG 21 2446448 2446453 GAAAAT 2446458 3.793 good homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggtTTGCAGctcatttactgcttcatcaacGAAAATtttaTccacg 2453105 2453668 R yfcV yfcVp1 Sigma70 2453752 2453757 TTCAAT 20 2453726 2453731 TATTGA 2453721 2.114 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtaTTCAATggctgggtataaacattggcTATTGActgaAtcaat 2453105 2453668 R yfcV yfcVp2 Sigma70 2453699 2453704 TTTATA 18 2453675 2453680 TAAGGA 2453669 2.348 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatgTTTATAttttaattatttatagttTAAGGAcaaatAatgag 2453105 2453668 R yfcV yfcVp3 Sigma70 2453760 2453765 ATGCCG 15 2453739 2453744 TATAAA 2453733 2.51 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcATGCCGtattcaatggctgggTATAAAcattgGctatt 2453105 2453668 R yfcV yfcVp4 Sigma70 2453720 2453725 CTGAAT 19 2453695 2453700 TATTTT 2453690 3.04 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgaCTGAATcaatgtattgcaatgtttaTATTTTaattAtttat 2453105 2453668 R yfcV yfcVp6 Sigma70 2453874 2453879 ATTAAA 18 2453850 2453855 TAAAAT 2453843 3.968 good homology 7.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaATTAAAtctacatttactcattagTAAAATtaaattGaatca 2453105 2453668 R yfcV yfcVp7 Sigma70 2453724 2453729 TTGACT 21 2453697 2453702 TATATT 2453690 5.273 high homology 4.88E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggctaTTGACTgaatcaatgtattgcaatgttTATATTttaattAtttat 2453105 2453668 R yfcV yfcVp9 Sigma70 2453707 2453712 TTGCAA 19 2453682 2453687 TATAGT 2453676 5.41 high homology 2.13E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtaTTGCAAtgtttatattttaattattTATAGTttaagGacaaa 2461034 2462092 F yfdF yfdFp7 Sigma70 2460971 2460976 TTGATA 18 2460995 2461000 TATATA 2461006 4.228 high homology 4.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGATAgtctatttcattaggtaaTATATAtttgtAacaaa 2461034 2462092 F yfdF yfdFp8 Sigma70 2460971 2460976 TTGATA 20 2460997 2461002 TATATT 2461007 4.904 high homology 5.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGATAgtctatttcattaggtaataTATATTtgtaAcaaat 2461034 2462092 F yfdF yfdFp9 Sigma70 2460971 2460976 TTGATA 15 2460992 2460997 TAATAT 2461004 5.33 high homology 7.66E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGATAgtctatttcattaggTAATATatatttGtaaca 2464567 2465724 F intS intSp1 Sigma70 2464470 2464475 TTTACA 20 2464496 2464501 GATCGT 2464507 2.064 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtagaTTTACAgttcgtcatggttcgcttcaGATCGTtgacaGccgca 2464567 2465724 F intS intSp2 Sigma70 2464447 2464452 CTGAAT 19 2464472 2464477 TACAGT 2464483 3.19 good homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcccCTGAATatcaagcattccgtagattTACAGTtcgtcAtggtt 2464567 2465724 F intS intSp4 Sigma70 2464513 2464518 CTCCAT 17 2464536 2464541 TAAAAT 2464548 3.686 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcaCTCCATgacgggtaaaaagtggaTAAAATaattttAcccac 2464567 2465724 F intS intSp5 Sigma70 2464501 2464506 TTGACA 18 2464525 2464530 TAAAAA 2464535 4.948 high homology 8.46E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcgTTGACAgccgcactccatgacgggTAAAAAgtggAtaaaa 2465877 2466239 F gtrA gtrAp1 Sigma70 2465793 2465798 TTGTCT 16 2465815 2465820 TATCGA 2465827 2.163 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttTTGTCTcatcaaccacagcaagTATCGAtcgattAagact 2465877 2466239 F gtrA gtrAp2 Sigma70 2465705 2465710 TTGATG 21 2465732 2465737 TAACAA 2465743 2.543 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggcTTGATGagaaggtggagtgagcgacctTAACAActatcGaatag 2465877 2466239 F gtrA gtrAp6 Sigma70 2465642 2465647 TTTACA 17 2465665 2465670 GATAAA 2465676 3.616 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgggaTTTACAaccatgctcagtatctcGATAAAcgcagAgaaat 2469099 2469539 R yfdK yfdKp1 Sigma70 2469578 2469583 TTCGCA 19 2469553 2469558 TAACTT 2469547 2.08 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTCGCAttagggtgttaatttctttTAACTTtatggAgtgaa 2469099 2469539 R yfdK yfdKp2 Sigma70 2469664 2469669 TTGGCT 19 2469639 2469644 TAACCA 2469632 2.26 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGGCTatatagcttgtgccggttaTAACCAggacccGgtgaa 2469099 2469539 R yfdK yfdKp4 Sigma70 2469764 2469769 CTGACG 18 2469740 2469745 TATTTT 2469733 2.858 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccgCTGACGtctcaggacacagtaaccTATTTTccgattGcattt 2469099 2469539 R yfdK yfdKp5 Sigma70 2469585 2469590 TTCATT 16 2469563 2469568 TAATTT 2469557 2.983 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggtgcTTCATTtttcgcattagggTGtTAATTTcttttAacttt 2469099 2469539 R yfdK yfdKp6 Sigma70 2469664 2469669 TTGGCT 17 2469641 2469646 TATAAC 2469636 3.566 good homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGGCTatatagcttgtgccggtTATAACcaggAcccgg 2471626 2471988 F yfdP yfdPp2 Sigma70 2471556 2471561 CTGCCT 15 2471577 2471582 TAAGCT 2471588 2.93 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgCTGCCTgaagcttcgcaacgtTAAGCTgataaAcattc 2471626 2471988 F yfdP yfdPp3 Sigma70 2471581 2471586 CTGATA 20 2471607 2471612 TATGAT 2471618 3.204 good homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaagCTGATAaacattcgacgcattgcggtTATGATgaggaGcagca 2471626 2471988 F yfdP yfdPp4 Sigma70 2471417 2471422 TTTACT 15 2471438 2471443 GATTCT 2471449 3.21 good homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgatTTTACTgacggatccccgccaGATTCTgacggGtgaaa 2471626 2471988 F yfdP yfdPp6 Sigma70 2471520 2471525 TTGACG 20 2471546 2471551 GAAAAT 2471558 3.644 good homology 5.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agattTTGACGggtcagagtctgacagtTGaGAAAATgccgctGcctga 2473006 2473542 F yfdR yfdRp2 Sigma70 2472823 2472828 TTGAGA 18 2472847 2472852 TAGAAA 2472858 3.348 good homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcttgTTGAGAaattcaaagacagcaaagTAGAAAcctttAttggt 2474332 2474532 F torI torIp1 Sigma70 2474253 2474258 CTGATC 21 2474280 2474285 TATTTT 2474290 2.103 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatcCTGATCtaccatcgccgtcatagagcgTATTTTtattAcctga 2478660 2480198 R emrY emrYp2 Sigma70 2480368 2480373 TTGGTT 16 2480346 2480351 TATTGA 2480340 2.543 poor homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaTTGGTTtatcgatgacagcaacTATTGAtacgaAgaacg 2486045 2487190 R yfdE yfdEp1 Sigma70 2487266 2487271 TTTCAT 21 2487239 2487244 TACATA 2487232 2.023 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actggTTTCATaattaatcatgttattgatttTACATAaatgccGaagtg 2486045 2487190 R yfdE yfdEp2 Sigma70 2487265 2487270 TTCATA 15 2487244 2487249 GATTTT 2487238 2.42 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTCATAattaatcatgttattGATTTTacataAatgcc 2486045 2487190 R yfdE yfdEp3 Sigma70 2487284 2487289 TTTATG 15 2487263 2487268 CATAAT 2487257 2.44 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggaTTTATGtcagtcgactggtttCATAATtaatcAtgtta 2487264 2488208 R yfdV yfdVp1 Sigma70 2488269 2488274 CTGACA 19 2488244 2488249 CATTAT 2488238 1.98 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataCTGACAtcgtctcctcttgccaactCATTATgcgatGgtgag 2487264 2488208 R yfdV yfdVp2 Sigma70 2488379 2488384 TTCAGT 19 2488354 2488359 TAATGT 2488349 2.41 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtaTTCAGTcgcgcaaaccgaccattatTAATGTggtcAtcgac 2488278 2489972 R oxc oxcp1 Sigma70 2490044 2490049 ATGAAG 16 2490022 2490027 GATATT 2490016 2.103 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcaATGAAGcaaaaccacgccatctGATATTaacggGggctt 2488278 2489972 R oxc oxcp2 Sigma70 2490044 2490049 ATGAAG 18 2490020 2490025 TATTAA 2490014 2.568 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctgcaATGAAGcaaaaccacgccatcTGaTATTAAcggggGcttct 2488278 2489972 R oxc oxcp3 Sigma70 2490152 2490157 ATGAAA 20 2490126 2490131 TATTAA 2490121 2.614 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccaATGAAAttctctgcctttacgccggaTATTAAagctGcgccg 2488278 2489972 R oxc oxcp4 Sigma70 2490018 2490023 TTAACG 20 2489992 2489997 TATAAA 2489985 2.654 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTAACGggggcttctggctcccaattTATAAAaatttcGaggtt 2488278 2489972 R oxc oxcp5 Sigma70 2490083 2490088 TTGCAG 15 2490062 2490067 GACGAT 2490055 2.75 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTGCAGgagctgggttatagcGACGATgaaattGctgca 2488278 2489972 R oxc oxcp6 Sigma70 2490124 2490129 TTAAAG 17 2490101 2490106 GAACAT 2490094 2.886 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggataTTAAAGctgcgccgctattaggtGAACATaccgctGctgta 2488278 2489972 R oxc oxcp7 Sigma70 2490083 2490088 TTGCAG 21 2490056 2490061 GAAATT 2490050 3.003 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTGCAGgagctgggttatagcgacgatGAAATTgctgcAatgaa 2488278 2489972 R oxc oxcp9 Sigma70 2490152 2490157 ATGAAA 18 2490128 2490133 GATATT 2490121 3.258 good homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccaATGAAAttctctgcctttacgccgGATATTaaagctGcgccg 2492720 2492995 F ypdI ypdIp2 Sigma70 2492628 2492633 TTTATT 20 2492654 2492659 TAATTA 2492665 1.464 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcaTTTATTatatcgatgtaaatactgatTAATTAaatgtAaatac 2492720 2492995 F ypdI ypdIp3 Sigma70 2492531 2492536 TTGTAG 16 2492553 2492558 TATTTT 2492565 3.343 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacagTTGTAGttattatcgcaagaagTATTTTagtcttAcaatt 2492720 2492995 F ypdI ypdIp4 Sigma70 2492579 2492584 ATGCTT 15 2492600 2492605 TATTCT 2492611 3.47 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaatATGCTTcctgtcgcagagaacTATTCTtatatAccaca 2492720 2492995 F ypdI ypdIp5 Sigma70 2492605 2492610 TTATAT 19 2492630 2492635 TATTAT 2492640 3.52 good homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTATATaccacaaagagatgtcattTATTATatcgAtgtaa 2492720 2492995 F ypdI ypdIp6 Sigma70 2492653 2492658 TTAATT 17 2492676 2492681 TAACAT 2492687 4.356 high homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaTTAATTaaatgtaaatacagccaTAACATcgtagGttctc 2493072 2493314 R yfdY yfdYp1 Sigma70 2493396 2493401 TTAGCA 19 2493371 2493376 GATTGT 2493364 1.97 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgcTTAGCAaaaattgccagaggttaagGATTGTcttactAttaaa 2493072 2493314 R yfdY yfdYp2 Sigma70 2493490 2493495 CTGACT 16 2493468 2493473 TATTAA 2493463 2.423 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcgCTGACTgctttcagctactgatTATTAAtcgtGcaaag 2493072 2493314 R yfdY yfdYp3 Sigma70 2493444 2493449 TTTCCG 19 2493419 2493424 TAACAT 2493414 2.76 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTTCCGtacacaacagtcttgcattTAACATgctgTtttca 2493072 2493314 R yfdY yfdYp4 Sigma70 2493469 2493474 TTATTA 15 2493448 2493453 TATTTT 2493442 2.85 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaTTATTAatcgtgcaaagtaaaTATTTTtccgtAcacaa 2493072 2493314 R yfdY yfdYp5 Sigma70 2493386 2493391 TTGCCA 20 2493360 2493365 TATTAA 2493355 3.684 good homology 3.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTGCCAgaggttaaggattgtcttacTATTAAagtgActgaa 2493072 2493314 R yfdY yfdYp6 Sigma70 2493386 2493391 TTGCCA 17 2493363 2493368 TACTAT 2493358 5.746 high homology 1.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTGCCAgaggttaaggattgtctTACTATtaaaGtgact 2496693 2498390 F ypdA ypdAp1 Sigma70 2496525 2496530 TTCAAT 20 2496551 2496556 CATTAT 2496562 2.094 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTCAATaaatttactaaccagaagtgCATTATcaagaGatgca 2496693 2498390 F ypdA ypdAp2 Sigma70 2496460 2496465 TTTAAA 20 2496486 2496491 TAACAA 2496496 2.254 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgcTTTAAAaacaggaaatttatctgcgcTAACAAgaaaAttacc 2496693 2498390 F ypdA ypdAp3 Sigma70 2496631 2496636 CTGCTG 21 2496658 2496663 TATCAT 2496668 2.263 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggcCTGCTGgtcatcagccttcaggttaccTATCATagagGtttaa 2496693 2498390 F ypdA ypdAp4 Sigma70 2496653 2496658 TTACCT 19 2496678 2496683 TATTCA 2496689 2.42 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaggTTACCTatcatagaggtttaatcctTATTCAgagtcAcccgt 2496693 2498390 F ypdA ypdAp6 Sigma70 2496497 2496502 TTACCA 18 2496521 2496526 TAATTT 2496532 3.588 good homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTACCActcattttattaacataaTAATTTcaataAattta 2496693 2498390 F ypdA ypdAp7 Sigma70 2496508 2496513 TTTATT 16 2496530 2496535 TAAATT 2496541 3.723 good homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcatTTTATTaacataataatttcaaTAAATTtactaAccaga 2500012 2502507 R fryA fryAp1 Sigma70 2502552 2502557 TTGTTC 15 2502531 2502536 GATGAT 2502525 2.35 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacggTTGTTCaactgacggatttcaGATGATctcctGattaa 2507652 2508908 F yfeO yfeOp1 Sigma70 2507442 2507447 TTGTCA 17 2507465 2507470 TAAAGT 2507475 5.516 high homology 2.28E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atactTTGTCAttcttcaactgctccgcTAAAGTcaaaAtaatt 2509023 2509349 F ypeC ypeCp1 Sigma70 2508924 2508929 TTTATG 16 2508946 2508951 GATGAT 2508957 2.203 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctccTTTATGatttaagagttatggcGATGATacgggGcttta 2509023 2509349 F ypeC ypeCp3 Sigma70 2508905 2508910 TTAGCA 15 2508926 2508931 TATGAT 2508937 3.71 good homology 0.00012341 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgtTTAGCAaaaaatgctctccttTATGATttaagAgttat 2509023 2509349 F ypeC ypeCp4 Sigma70 2508947 2508952 ATGATA 18 2508971 2508976 TAATAT 2508983 4.108 high homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgATGATAcggggctttacctccccgTAATATtgcgttAacagg 2512353 2513465 F insL insLp1 Sigma70 2512311 2512316 TTAAGG 19 2512336 2512341 TATGAT 2512347 2.51 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctaacTTAAGGgttgtggtattacgccTGaTATGATttaacGtgccg 2512353 2513465 F insL insLp2 Sigma70 2512107 2512112 TTCCTT 21 2512134 2512139 GATTAT 2512145 2.583 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTCCTTcgctaacttctcttcaatcggGATTATcgcagGtgcag 2513665 2515854 R yfeA yfeAp1 Sigma70 2516018 2516023 CTGCTT 16 2515996 2516001 TACAGT 2515991 2.653 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtctCTGCTTtttgccgcttttgtaaTACAGTctacGtccgg 2513665 2515854 R yfeA yfeAp2 Sigma70 2515923 2515928 CTGTTT 15 2515902 2515907 TAAACT 2515897 2.94 poor homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccccCTGTTTgcttcgcgatgcgaaTAAACTtattAtttgt 2513665 2515854 R yfeA yfeAp5 Sigma70 2515919 2515924 TTGCTT 17 2515896 2515901 TATTAT 2515891 5.956 high homology 9.54E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgtTTGCTTcgcgatgcgaataaactTATTATttgtGtgcct 2516063 2516138 R alaX alaXp1 Sigma70 2516370 2516375 TTCCAA 16 2516348 2516353 GATTTT 2516342 2.273 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggttTTCCAAaattgttcatttgcctGATTTTtcagcGattga 2516063 2516138 R alaX alaXp4 Sigma70 2516354 2516359 TTGCCT 15 2516333 2516338 GAAACT 2516328 4.19 high homology 4.63E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTGCCTgatttttcagcgattGAAACTacacGttgca 2516063 2516138 R alaX alaXp5 Sigma70 2516309 2516314 TTGACA 17 2516286 2516291 TATGAT 2516281 6.416 high homology 2.13E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgTTGACAcattcgggcggaattcaTATGATgccgCccgtc 2516489 2516833 F yfeC yfeCp1 Sigma70 2516434 2516439 ATGAAC 16 2516456 2516461 TACATT 2516467 2.513 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaATGAACtactaatagacccacaTACATTcagggAattgt 2516489 2516833 F yfeC yfeCp2 Sigma70 2516401 2516406 ATGTCA 21 2516428 2516433 TATAAA 2516438 2.553 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tattcATGTCAcggtttcctgtaaagtggTGtTATAAAatgaActact 2516489 2516833 F yfeC yfeCp3 Sigma70 2516370 2516375 TTGGAA 20 2516396 2516401 TATTCA 2516406 3.084 poor homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caattTTGGAAaaccgctcgcattcagtagtTATTCAtgtcAcggtt 2516489 2516833 F yfeC yfeCp5 Sigma70 2516322 2516327 TTGCAA 18 2516346 2516351 GAAAAA 2516356 3.528 good homology 4.97E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTGCAAcgtgtagtttcaatcgctGAAAAAtcagGcaaat 2520751 2522007 R xapB xapBp1 Sigma70 2522231 2522236 TTTCAG 16 2522209 2522214 TAAAGT 2522204 3.413 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTTCAGctcgccattgcgacctTAAAGTcgttGcggtc 2523149 2523913 F yfeN yfeNp1 Sigma70 2523051 2523056 TTGGCG 18 2523075 2523080 TAACAA 2523087 2.368 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTGGCGatattaattcctttgcatTAACAAtatgtcGttttt 2523149 2523913 F yfeN yfeNp2 Sigma70 2523013 2523018 TTATAT 21 2523040 2523045 TAAAAA 2523050 2.493 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTATATcttttctctattaatccacggTAAAAActgtAttggc 2523952 2524878 R yfeR yfeRp2 Sigma70 2524964 2524969 ATAAAG 21 2524937 2524942 TATTGT 2524931 1.923 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttcATAAAGactccagatgatcgatggttcTATTGTgcttcTtccag 2523952 2524878 R yfeR yfeRp3 Sigma70 2524968 2524973 TTTCAT 17 2524945 2524950 GATGGT 2524938 3.236 good homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaagTTTCATaaagactccagatgatcGATGGTtctattGtgctt 2523952 2524878 R yfeR yfeRp4 Sigma70 2524935 2524940 TTGTGC 18 2524911 2524916 TAAAAT 2524904 3.578 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctaTTGTGCttcttccagtttgagaaaTAAAATtgatttAttgca 2524968 2525966 F yfeH yfeHp1 Sigma70 2524724 2524729 CTGTCC 16 2524746 2524751 TATGAT 2524757 1.963 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggttCTGTCCagcaggcgaacaccagTATGATtttccAgttcc 2524968 2525966 F yfeH yfeHp2 Sigma70 2524898 2524903 ATGCAA 18 2524922 2524927 CAAACT 2524933 2.518 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatggATGCAAtaaatcaattttatttctCAAACTggaagAagcac 2524968 2525966 F yfeH yfeHp4 Sigma70 2524913 2524918 TTTATT 17 2524936 2524941 CACAAT 2524948 3.186 good homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTTATTtctcaaactggaagaagCACAATagaaccAtcgat 2525963 2526181 R ypeB ypeBp1 Sigma70 2526279 2526284 GTGATA 20 2526253 2526258 TAAACT 2526247 2.684 poor homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctgGTGATAgcgggtgaagctgcaggatcTAAACTggcgaAggcgc 2528269 2529255 R zipA zipAp1 Sigma70 2529431 2529436 TTACCG 21 2529404 2529409 TAGGAT 2529397 2.363 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtattTTACCGggtaattgcgcaatggacagtTAGGATatgttcGaaaaa 2528269 2529255 R zipA zipAp4 Sigma70 2529420 2529425 TTGCGC 15 2529399 2529404 TATGTT 2529393 2.61 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaTTGCGCaatggacagttaggaTATGTTcgaaaAaacag 2528269 2529255 R zipA zipAp7 Sigma70 2529370 2529375 TTTCAT 15 2529349 2529354 GAAAGT 2529343 2.92 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cacgaTTTCATctatctttgtgcTGtGAAAGTtaataGtgcac 2528269 2529255 R zipA zipAp9 Sigma70 2529461 2529466 TTGACC 20 2529435 2529440 TATTTT 2529429 3.644 good homology 5.66E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccttTTGACCaatcccaggaaaattctgcgTATTTTaccggGtaatt 2528269 2529255 R zipA zipAp10 Sigma70 2529332 2529337 TTGCAC 17 2529309 2529314 TACTCT 2529303 4.706 high homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcacTTGCACttgaggtaatcggcaaaTACTCTtagtgAgtaaa 2529485 2530246 F cysZ cysZp2 Sigma70 2529382 2529387 TTTTTG 15 2529403 2529408 TATCCT 2529413 2.28 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgcTTTTTGctgttttttcgaacaTATCCTaactGtccat 2529485 2530246 F cysZ cysZp3 Sigma70 2529323 2529328 TTACCT 15 2529344 2529349 TATTAA 2529355 2.86 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgaTTACCTcaagtgcaagtgcacTATTAActttcAcagca 2529485 2530246 F cysZ cysZp4 Sigma70 2529323 2529328 TTACCT 18 2529347 2529352 TAACTT 2529358 2.888 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgaTTACCTcaagtgcaagtgcactatTAACTTtcacaGcacaa 2529485 2530246 F cysZ cysZp5 Sigma70 2529407 2529412 CTAACT 21 2529434 2529439 TAAAAT 2529445 2.993 poor homology 0.000128446 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatcCTAACTgtccattgcgcaattacccggTAAAATacgcaGaattt 2536694 2537605 R cysM cysMp2 Sigma70 2537756 2537761 TTGCTC 17 2537733 2537738 TAGGTT 2537727 3.276 good homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggaacTTGCTCtcgcacaaagcgccTGaTAGGTTgagtgAatgtt 2547668 2548567 R yfeX yfeXp1 Sigma70 2548656 2548661 TTGCGT 19 2548631 2548636 GAAAAA 2548626 1.81 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatTTGCGTctgaacaaaccgccgccgcGAAAAAacacGtaaaa 2547668 2548567 R yfeX yfeXp2 Sigma70 2548603 2548608 ATGCCA 18 2548579 2548584 TATTTT 2548573 3.538 good homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaATGCCAcggattgcgtggcattatTATTTTcaggaGgaaca 2547668 2548567 R yfeX yfeXp3 Sigma70 2548603 2548608 ATGCCA 15 2548582 2548587 TATTAT 2548576 4.1 high homology 6.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaATGCCAcggattgcgtggcatTATTATtttcaGgagga 2549299 2549748 R yfeZ yfeZp1 Sigma70 2549971 2549976 ATGACG 20 2549945 2549950 TATCTT 2549939 1.854 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggttATGACGggcatcgcgggtctgcttatTATCTTggcgtGcatcc 2549299 2549748 R yfeZ yfeZp2 Sigma70 2549971 2549976 ATGACG 17 2549948 2549953 TATTAT 2549943 4.466 high homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggttATGACGggcatcgcgggtctgctTATTATcttgGcgtgc 2552152 2553204 R eutR eutRp1 Sigma70 2553286 2553291 TTACGT 15 2553265 2553270 TATCGT 2553259 2.21 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggacgTTACGTaaacgcagtagtcgtTATCGTctcaaGcccca 2552152 2553204 R eutR eutRp2 Sigma70 2553414 2553419 CTGACG 15 2553393 2553398 TAACAT 2553388 2.63 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atctgCTGACGagttgttggcgcTGtTAACATcagtAcgtca 2556880 2558088 F intZ intZp1 Sigma70 2556633 2556638 TTTAGC 20 2556659 2556664 TAAACT 2556670 2.514 poor homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttggcTTTAGCcagcacctcttttacatcctTAAACTgatatAcattg 2556880 2558088 F intZ intZp4 Sigma70 2556777 2556782 TTGTCG 15 2556798 2556803 TAAACA 2556809 2.89 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcccTTGTCGtgtaaggtggttgccTAAACAcgcccGttatt 2556880 2558088 F intZ intZp5 Sigma70 2556762 2556767 TTTCAT 17 2556785 2556790 TAAGGT 2556795 4.166 high homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgTTTCATcgtcagcccttgtcgtgTAAGGTggttGcctaa 2558279 2558920 F yffL yffLp1 Sigma70 2558207 2558212 TTTCTT 15 2558228 2558233 CATTAT 2558238 2.16 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggctTTTCTTtttcgctaattattcCATTATtccaAttaag 2558279 2558920 F yffL yffLp2 Sigma70 2558154 2558159 TTAACT 20 2558180 2558185 TATTCA 2558190 2.454 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTAACTatcacctgataagaaacctgTATTCAatttGccgga 2558279 2558920 F yffL yffLp3 Sigma70 2558233 2558238 TTCCAA 15 2558254 2558259 TATTCA 2558265 2.86 poor homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTCCAAttaagtggaataaatTATTCAatatcAagaac 2558279 2558920 F yffL yffLp4 Sigma70 2558225 2558230 TTCCAT 18 2558249 2558254 TAAATT 2558260 3.958 good homology 0.000139144 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTCCATtattccaattaagtggaaTAAATTattcaAtatca 2560133 2560549 F yffO yffOp2 Sigma70 2560058 2560063 TTGTCA 21 2560085 2560090 GAAAAA 2560096 2.493 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggtttTTGTCAattttcaacctcaattctTGcGAAAAAtggcaAaaata 2560133 2560549 F yffO yffOp5 Sigma70 2559993 2559998 TTGACG 20 2560019 2560024 CAAAAT 2560029 2.894 poor homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccagTTGACGctccgttagattgctaacgcCAAAATtagcGctgaa 2560133 2560549 F yffO yffOp7 Sigma70 2559980 2559985 TTGGAA 19 2560005 2560010 TAGATT 2560015 3.78 good homology 5.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagatTTGGAAgcgccagttgacgctccgtTAGATTgctaAcgcca 2561614 2561991 F yffQ yffQp2 Sigma70 2561375 2561380 TTGCAC 15 2561396 2561401 GAACAT 2561406 2.71 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgacgTTGCACaattgattaatttctGAACATtcaaAtcaac 2562545 2563354 F yffS yffSp1 Sigma70 2562299 2562304 TTCAAA 19 2562324 2562329 GAGAAT 2562335 2.93 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgagTTCAAActtaaagcggcagcggtcaGAGAATgcgccAacgta 2562545 2563354 F yffS yffSp2 Sigma70 2562482 2562487 TTACCC 17 2562505 2562510 TAACCT 2562515 3.366 good homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tacgcTTACCCtccaccaatacgcgTGtTAACCTcccaAtggat 2562545 2563354 F yffS yffSp4 Sigma70 2562391 2562396 TTGATT 15 2562412 2562417 TAAACA 2562422 4.1 high homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtaaTTGATTgcgaatagcaacaacTAAACAaccaAtacac 2574120 2576399 R maeB maeBp1 Sigma70 2576510 2576515 TTTGGA 15 2576489 2576494 TAGACT 2576483 2.52 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagagTTTGGActtgctcaaagtctgTAGACTccggcAgggta 2574120 2576399 R maeB maeBp2 Sigma70 2576539 2576544 TTACCA 18 2576515 2576520 GAGAGT 2576510 2.528 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTACCAaaacattatattaatggtGAGAGTttggActtgc 2574120 2576399 R maeB maeBp3 Sigma70 2576584 2576589 ATGGTA 17 2576561 2576566 TAACAT 2576556 3.446 good homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcATGGTAttgctggattaagcaggTAACATcagtGttata 2574120 2576399 R maeB maeBp4 Sigma70 2576550 2576555 TTATAG 17 2576527 2576532 TATATT 2576522 3.796 good homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtgTTATAGgattattaccaaaacatTATATTaatgGtgaga 2579756 2580799 R ypfG ypfGp2 Sigma70 2580866 2580871 TTGAGC 17 2580843 2580848 GAAGAT 2580838 3.016 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccgaTTGAGCcgcgctacctgcgcaacGAAGATacgaCttgtg 2579756 2580799 R ypfG ypfGp3 Sigma70 2580946 2580951 TTGCAA 19 2580921 2580926 GAAAAA 2580915 3.07 poor homology 4.97E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actatTTGCAAacgtcacatttaatggactGAAAAAtaacaAtaata 2579756 2580799 R ypfG ypfGp4 Sigma70 2580932 2580937 TTTAAT 17 2580909 2580914 TAATAT 2580902 5.266 high homology 4.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaTTTAATggactgaaaaataacaaTAATATttcgttGtttat 2581568 2583547 R aegA aegAp1 Sigma70 2583610 2583615 CTGTAA 21 2583583 2583588 TATAAA 2583577 2.423 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcccCTGTAAgtcgggtaataacaacactcaTATAAAgaataAggttt 2581568 2583547 R aegA aegAp2 Sigma70 2583622 2583627 TTGCCG 21 2583595 2583600 TAACAA 2583589 2.473 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacaTTGCCGattcccctgtaagtcgggtaaTAACAAcactcAtataa 2581568 2583547 R aegA aegAp3 Sigma70 2583707 2583712 CTGAAA 20 2583681 2583686 GATTAT 2583676 2.554 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttcgCTGAAAcgcaatttagtcagtgaTGgGATTATttgaTctgcc 2581568 2583547 R aegA aegAp4 Sigma70 2583622 2583627 TTGCCG 18 2583598 2583603 TAATAA 2583593 3.348 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacaTTGCCGattcccctgtaagtcgggTAATAAcaacActcat 2583753 2585453 F narQ narQp1 Sigma70 2583676 2583681 ATCAAA 16 2583698 2583703 TAAATT 2583710 2.603 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcagATCAAAtaatcccatcactgacTAAATTgcgtttCagcga 2583753 2585453 F narQ narQp2 Sigma70 2583543 2583548 TTCATA 20 2583569 2583574 TAAAAA 2583579 2.824 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgaTTCATAacgaccttcttttttggttgTAAAAAccttAttctt 2583753 2585453 F narQ narQp8 Sigma70 2583555 2583560 TTCTTT 17 2583578 2583583 TATTCT 2583588 3.996 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaccTTCTTTtttggttgtaaaaacctTATTCTttatAtgagt 2588829 2588888 R ypfM ypfMp1 Sigma70 2589074 2589079 TTAAAT 15 2589053 2589058 TATGAA 2589046 2.98 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTAAATcagtattagatgccgTATGAAtatctcGaaatg 2588829 2588888 R ypfM ypfMp3 Sigma70 2589074 2589079 TTAAAT 18 2589050 2589055 GAATAT 2589044 3.338 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTAAATcagtattagatgccgtatGAATATctcgaAatgtt 2588829 2588888 R ypfM ypfMp4 Sigma70 2588937 2588942 TTCACC 17 2588914 2588919 TAGAAT 2588909 4.206 high homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagcTTCACCacggtatattgtttccgTAGAATacccAtaatt 2591094 2591792 R ypfH ypfHp1 Sigma70 2592015 2592020 GTGATG 19 2591990 2591995 TAAACT 2591984 2.18 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaGTGATGcgcagttatgtaccacactTAAACTttcagGccgca 2591094 2591792 R ypfH ypfHp2 Sigma70 2591842 2591847 ATGGTC 17 2591819 2591824 TAAAAT 2591813 3.596 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctcATGGTCattgtgagtcagcggcgTAAAATtaatgAcatca 2591866 2593881 R tmcA tmcAp1 Sigma70 2593918 2593923 ATGCAA 19 2593893 2593898 TAACTT 2593887 2.38 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacaATGCAAtacttttggtaaaagcattTAACTTccgggGcaggg 2612842 2613903 R yfgO yfgOp1 Sigma70 2614095 2614100 TTTCTG 19 2614070 2614075 TACTGT 2614064 2.13 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTTCTGgagatagtcatttgaccgaTACTGTgaaatAtcgtt 2612842 2613903 R yfgO yfgOp2 Sigma70 2614132 2614137 TTTTTT 15 2614111 2614116 TAACCT 2614104 2.55 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggtTTTTTTtcaactgcctgaacaTAACCTctatccTgtatt 2612842 2613903 R yfgO yfgOp3 Sigma70 2614001 2614006 TTTTCA 17 2613978 2613983 TAAAAA 2613972 3.676 good homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgacTTTTCAgtttcctgaatccgtcaTAAAAAgcgaaGtcttt 2612842 2613903 R yfgO yfgOp5 Sigma70 2614128 2614133 TTTCAA 18 2614104 2614109 TATCCT 2614098 4.158 high homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTTCAActgcctgaacataacctcTATCCTgtattTctgga 2616893 2618182 R uraA uraAp1 Sigma70 2618219 2618224 TTGAGT 20 2618193 2618198 TACAGA 2618187 2.154 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGAGTaaagcgcctataacacataaTACAGAggataAtacta 2616893 2618182 R uraA uraAp2 Sigma70 2618276 2618281 TTGGTA 18 2618252 2618257 TAATTA 2618246 2.618 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatctTTGGTAcgaaataaagaataaaaaTAATTAaagccGacttt 2616893 2618182 R uraA uraAp3 Sigma70 2618342 2618347 TTGATC 18 2618318 2618323 GATACA 2618311 2.678 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgaTTGATCagggactgaacgagcacgGATACAttattcCgggcc 2616893 2618182 R uraA uraAp4 Sigma70 2618219 2618224 TTGAGT 15 2618198 2618203 CATAAT 2618192 3.26 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGAGTaaagcgcctataacaCATAATacagaGgataa 2616893 2618182 R uraA uraAp5 Sigma70 2618342 2618347 TTGATC 20 2618316 2618321 TACATT 2618310 3.334 good homology 0.00012465 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgaTTGATCagggactgaacgagcacggaTACATTattccGggcct 2621066 2623132 F ppk ppkp1 Sigma70 2620993 2620998 TTGGAC 19 2621018 2621023 CATAAT 2621029 2.61 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catagTTGGACatctgccaatattgctcgcCATAATatccaGgcagt 2621066 2623132 F ppk ppkp3 Sigma70 2620993 2620998 TTGGAC 21 2621020 2621025 TAATAT 2621030 3.823 good homology 0.000100034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catagTTGGACatctgccaatattgctcgccaTAATATccagGcagtg 2627312 2627503 F yfgG yfgGp2 Sigma70 2627177 2627182 TTAAAT 20 2627203 2627208 TATGTA 2627215 1.704 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTAAATtaacttccataacattaaaaTATGTAtccactGacgct 2627312 2627503 F yfgG yfgGp3 Sigma70 2627156 2627161 TTACAT 21 2627183 2627188 TAACTT 2627194 2.613 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTACATcatcattgtaaataattaaatTAACTTccataAcatta 2627312 2627503 F yfgG yfgGp4 Sigma70 2627156 2627161 TTACAT 16 2627178 2627183 TAAATT 2627190 3.643 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTACATcatcattgtaaataatTAAATTaacttcCataac 2627312 2627503 F yfgG yfgGp5 Sigma70 2627239 2627244 TTGACC 19 2627264 2627269 TAATGT 2627274 3.85 good homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaTTGACCattttgtcctgttgtgcctTAATGTaagtAccgtc 2627312 2627503 F yfgG yfgGp6 Sigma70 2627177 2627182 TTAAAT 15 2627198 2627203 TAAAAT 2627208 4.89 high homology 1.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTAAATtaacttccataacatTAAAATatgtAtccac 2627814 2628332 F yfgH yfgHp1 Sigma70 2627763 2627768 TTTTGA 15 2627784 2627789 TATTTT 2627795 2.2 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcctcTTTTGAtgatcttaaatgtctTATTTTtcgtaAtgtgt 2627814 2628332 F yfgH yfgHp2 Sigma70 2627689 2627694 TTTATA 15 2627710 2627715 GAATTT 2627721 2.31 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTTATAaattattccctgcgtGAATTTtaataAattta 2627814 2628332 F yfgH yfgHp4 Sigma70 2627605 2627610 TTTACG 20 2627631 2627636 TATCCT 2627642 2.894 poor homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaatTTTACGtctttatcctgactgatgttTATCCTgtttgGctgcg 2627814 2628332 F yfgH yfgHp5 Sigma70 2627639 2627644 TTGGCT 21 2627666 2627671 TATATA 2627676 3.113 poor homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgtTTGGCTgcgaaataaatataaaattaaTATATAtgttGtaatg 2627814 2628332 F yfgH yfgHp7 Sigma70 2627700 2627705 TTCCCT 19 2627725 2627730 TAATCT 2627736 3.44 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTCCCTgcgtgaattttaataaattTAATCTatcccTttata 2627814 2628332 F yfgH yfgHp9 Sigma70 2627723 2627728 TTTAAT 18 2627747 2627752 TACATT 2627758 4.068 high homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTTAATctatccctttatacgcaaTACATTtacttTcctct 2627814 2628332 F yfgH yfgHp10 Sigma70 2627662 2627667 TTAATA 15 2627683 2627688 TATATT 2627694 4.28 high homology 5.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence taaaaTTAATAtatatgttgtaaTGaTATATTtttatAaatta 2628980 2630557 R guaA guaAp1 Sigma70 2630615 2630620 TTCGCC 20 2630589 2630594 TATATT 2630584 2.254 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcTTCGCCcgacttcatgtcgggcgattTATATTatctGtttca 2628980 2630557 R guaA guaAp2 Sigma70 2630768 2630773 CTGTAT 18 2630744 2630749 TACTAT 2630738 2.778 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgctcCTGTATgggtctgaccggctgTGgTACTATcgacgAactgc 2633906 2635378 R der derp1 Sigma70 2635535 2635540 CTGATC 21 2635508 2635513 TACTCT 2635502 2.043 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactgCTGATCcaggcaaaagacggaaccgtgTACTCTattacAcgtta 2633906 2635378 R der derp2 Sigma70 2635604 2635609 TTCGTT 15 2635583 2635588 GATAGT 2635578 2.24 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgtTTCGTTgcccagcaaaaagttGATAGTtccgGtttcc 2633906 2635378 R der derp4 Sigma70 2635444 2635449 TTTCCT 17 2635421 2635426 GAATAT 2635415 3.666 good homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgtTTTCCTgtttttaacaacgacgcGAATATagcgtGcgttg 2638708 2639826 R ispG ispGp2 Sigma70 2640006 2640011 TTGAAC 20 2639980 2639985 CAAACT 2639975 2.624 poor homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTGAACttaaccggccaggcaccgtaCAAACTgaaaAttggt 2638708 2639826 R ispG ispGp3 Sigma70 2640006 2640011 TTGAAC 18 2639982 2639987 TACAAA 2639976 3.758 good homology 0.000115067 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTGAACttaaccggccaggcaccgTACAAActgaaAattgg 2639853 2640866 R rodZ rodZp1 Sigma70 2640986 2640991 TTGTCA 20 2640960 2640965 TACTGT 2640954 3.284 good homology 9.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggctTTGTCAcgagcacacagacggtcttaTACTGTatgatAacggt 2639853 2640866 R rodZ rodZp2 Sigma70 2640986 2640991 TTGTCA 18 2640962 2640967 TATACT 2640956 5.548 high homology 4.33E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggctTTGTCAcgagcacacagacggtctTATACTgtatgAtaacg 2641151 2642305 R rlmN rlmNp1 Sigma70 2642357 2642362 TTTCTT 21 2642330 2642335 TAACGT 2642324 2.633 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggcgTTTCTTttttcaaccctccaggggccaTAACGTgtaatAacgag 2641151 2642305 R rlmN rlmNp2 Sigma70 2642423 2642428 GTGGCA 18 2642399 2642404 TACAAT 2642393 2.698 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaacGTGGCAtccgtgcgccagaatttgTACAATgcagcGccccc 2641151 2642305 R rlmN rlmNp3 Sigma70 2642350 2642355 TTTCAA 21 2642323 2642328 TAATAA 2642318 2.823 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctttTTTCAAccctccaggggccataacgtgTAATAAcgagGccgga 2642455 2642886 R ndk ndkp2 Sigma70 2642951 2642956 TTGCTC 21 2642924 2642929 TACGCT 2642918 3.163 good homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccctgTTGCTCattataatccgcgccatctcgTACGCTggtacAgacaa 2642455 2642886 R ndk ndkp3 Sigma70 2643017 2643022 CTGATT 17 2642994 2642999 TATTTT 2642988 3.796 good homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtccCTGATTgttgctaaaactcatttTATTTTaaaaaAatgtt 2642455 2642886 R ndk ndkp4 Sigma70 2643010 2643015 TTGCTA 15 2642989 2642994 TAAAAA 2642982 4.21 high homology 4.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgTTGCTAaaactcattttatttTAAAAAaatgttAccttc 2651877 2652180 F ryfA ryfAp1 Sigma70 2651688 2651693 TTTCCT 19 2651713 2651718 CAAAAT 2651724 2.41 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcacTTTCCTttaaaaaacaaaaaaccgcCAAAATcaggcGgtttt 2651877 2652180 F ryfA ryfAp2 Sigma70 2651670 2651675 TTAAAC 19 2651695 2651700 TAAAAA 2651706 2.55 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attacTTAAACatgtaaattcactttccttTAAAAAacaaaAaaccg 2651877 2652180 F ryfA ryfAp4 Sigma70 2651656 2651661 GTAAAA 17 2651679 2651684 TAAATT 2651690 2.626 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccgGTAAAAgatattacttaaacatgTAAATTcacttTccttt 2651877 2652180 F ryfA ryfAp5 Sigma70 2651647 2651652 TTCTAA 18 2651671 2651676 TAAACA 2651682 2.778 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTCTAAccggtaaaagatattactTAAACAtgtaaAttcac 2651877 2652180 F ryfA ryfAp6 Sigma70 2651825 2651830 TTTTTG 16 2651847 2651852 TATTAT 2651859 2.813 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctctcTTTTTGtcaagcaaaagagagtTATTATtgttctGttagt 2651877 2652180 F ryfA ryfAp7 Sigma70 2651781 2651786 ATGCAA 15 2651802 2651807 GACAAT 2651812 2.88 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtaATGCAAgcgcgtctcagcggaGACAATactcGccagt 2651877 2652180 F ryfA ryfAp9 Sigma70 2651827 2651832 TTTGTC 17 2651850 2651855 TATTGT 2651862 3.216 good homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcttTTTGTCaagcaaaagagagttatTATTGTtctgttAgtgta 2652179 2652955 R sseB sseBp1 Sigma70 2653115 2653120 ATAGCT 20 2653089 2653094 TAATAT 2653083 1.534 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgATAGCTaatctgttaacggcgtaaacTAATATgccggAtgcgg 2652179 2652955 R sseB sseBp2 Sigma70 2653115 2653120 ATAGCT 15 2653094 2653099 TAAACT 2653088 2.37 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgATAGCTaatctgttaacggcgTAAACTaatatGccgga 2653097 2654380 R pepB pepBp1 Sigma70 2654521 2654526 TTGGCT 20 2654495 2654500 CATAGT 2654489 2.424 poor homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTGGCTgcgctcgttcaccccagtcaCATAGTtatctAtgctc 2653097 2654380 R pepB pepBp2 Sigma70 2654582 2654587 TTGTTA 21 2654555 2654560 TAATTT 2654550 3.533 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgattTTGTTAgtctggctggacgaggccgaaTAATTTccgcGtcatg 2653097 2654380 R pepB pepBp4 Sigma70 2654508 2654513 TTCACC 17 2654485 2654490 TATGCT 2654479 4.106 high homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcgTTCACCccagtcacatagttatcTATGCTcctggGgcttc 2654558 2654758 R iscX iscXp1 Sigma70 2654815 2654820 TTAGTA 15 2654794 2654799 TACACT 2654789 3.45 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagatTTAGTAgtcgaaatcccgcgtTACACTatcaAccatg 2657585 2657908 R iscA iscAp1 Sigma70 2658026 2658031 CTGAAG 19 2658001 2658006 GAAAAT 2657995 2.33 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgCTGAAGaacttgaactgccgccggtGAAAATtcactGttcta 2657585 2657908 R iscA iscAp2 Sigma70 2658012 2658017 CTGCCG 20 2657986 2657991 TATTCT 2657980 2.444 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgaaCTGCCGccggtgaaaattcactgttcTATTCTggcagAagacg 2657585 2657908 R iscA iscAp3 Sigma70 2657967 2657972 ATCAAA 15 2657946 2657951 TATAAA 2657940 2.46 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgATCAAAgccgccattgcggacTATAAAagcaaAcgtga 2660605 2661345 R trmJ trmJp1 Sigma70 2661464 2661469 ATGCAT 20 2661438 2661443 TAAAGA 2661432 1.834 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atcggATGCATcggtctctctcactggaTGtTAAAGAacgggAaaacg 2660605 2661345 R trmJ trmJp2 Sigma70 2661384 2661389 TTTTAT 15 2661363 2661368 TAATCT 2661358 3.36 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcgTTTTATgataagatgcgtgaaTAATCTttagAtgaag 2661464 2662267 F suhB suhBp1 Sigma70 2661354 2661359 TTCATC 20 2661380 2661385 TATCAT 2661391 2.524 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttcTTCATCtaaagattattcacgcatctTATCATaaaacGaagac 2661464 2662267 F suhB suhBp3 Sigma70 2661345 2661350 TTGTCT 16 2661367 2661372 TATTCA 2661377 3.013 poor homology 0.000220415 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaTTGTCTttcttcatctaaagatTATTCAcgcaTcttat 2661464 2662267 F suhB suhBp4 Sigma70 2661337 2661342 TTGCAG 21 2661364 2661369 GATTAT 2661374 3.523 good homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTGCAGcattgtctttcttcatctaaaGATTATtcacGcatct 2661464 2662267 F suhB suhBp5 Sigma70 2661337 2661342 TTGCAG 17 2661360 2661365 TAAAGA 2661372 4.046 high homology 0.00016826 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTGCAGcattgtctttcttcatcTAAAGAttattcAcgcat 2664729 2665868 R hcaT hcaTp2 Sigma70 2665960 2665965 TTACAG 18 2665936 2665941 GAATAT 2665931 2.488 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgTTACAGacatcgggaagcaggctcGAATATtcttAttttt 2664729 2665868 R hcaT hcaTp3 Sigma70 2666043 2666048 TTGGCA 20 2666017 2666022 CATTAT 2666012 2.624 poor homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgtTTGGCAagcgtaacggcataattacgCATTATttttGcaaca 2664729 2665868 R hcaT hcaTp5 Sigma70 2665960 2665965 TTACAG 21 2665933 2665938 TATTCT 2665927 3.433 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgTTACAGacatcgggaagcaggctcgaaTATTCTtatttTtcaac 2671368 2671790 F yphA yphAp2 Sigma70 2671222 2671227 TTGATG 19 2671247 2671252 GAACAT 2671257 2.62 poor homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aacgtTTGATGcgaaactgctgatagaTGaGAACATcgcgCttaaa 2671838 2672710 R yphB yphBp1 Sigma70 2672872 2672877 TTCCAT 15 2672851 2672856 CATGAT 2672845 2.03 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtctgTTCCATatggaaaaatgcgccCATGATctgacGgactg 2673849 2674847 R yphD yphDp1 Sigma70 2675070 2675075 ATCGAA 20 2675044 2675049 TATTGT 2675038 1.494 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgatATCGAAgccaaacagcagatttaccgTATTGTccgtgAgctgg 2677486 2680767 R yphG yphGp2 Sigma70 2680923 2680928 TTGTTA 19 2680898 2680903 TATTAA 2680892 3.14 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcatTTGTTAtggtggcgaatctgttgatTATTAAtgcagGctctc 2677486 2680767 R yphG yphGp4 Sigma70 2680923 2680928 TTGTTA 16 2680901 2680906 GATTAT 2680896 3.363 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcatTTGTTAtggtggcgaatctgttGATTATtaatGcaggc 2677486 2680767 R yphG yphGp5 Sigma70 2680798 2680803 TTTAAT 17 2680775 2680780 TATTGA 2680770 3.616 good homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatctTTTAATtcagtatgtcttgttaaTATTGAgggcAccatg 2677486 2680767 R yphG yphGp6 Sigma70 2680799 2680804 TTTTAA 15 2680778 2680783 TAATAT 2680772 3.76 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaatcTTTTAAttcagtatgtctTGtTAATATtgaggGcacca 2680885 2682078 F yphH yphHp1 Sigma70 2680794 2680799 CTGAAT 19 2680819 2680824 TATTGA 2680829 1.89 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acataCTGAATtaaaagatttgtggcagtgTATTGAacaaTctggc 2680885 2682078 F yphH yphHp2 Sigma70 2680754 2680759 TTTACT 16 2680776 2680781 CAATAT 2680787 2.213 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acactTTTACTggagtcatggtgccctCAATATtaacaAgacat 2680885 2682078 F yphH yphHp3 Sigma70 2680799 2680804 TTAAAA 21 2680826 2680831 CAATCT 2680836 2.223 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTAAAAgatttgtggcagtgtattgaaCAATCTggcaAtgttt 2686815 2687528 R yfhG yfhGp1 Sigma70 2687730 2687735 TTGTTT 21 2687703 2687708 GAAAAA 2687697 2.073 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgtTTGTTTccgcattgaattaccgtcgtcGAAAAAcacgaAataat 2686815 2687528 R yfhG yfhGp2 Sigma70 2687568 2687573 CTGCAA 18 2687544 2687549 TAGGCT 2687539 2.818 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgtCTGCAAcaattacgcccactgggaTAGGCTttaaGtctgg 2686815 2687528 R yfhG yfhGp3 Sigma70 2687688 2687693 ATGCTA 19 2687663 2687668 TATTTT 2687658 2.86 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataATGCTAacagcctatcctatcaggcTATTTTatttGtcagt 2695376 2695879 R tadA tadAp1 Sigma70 2696083 2696088 ATGAAA 19 2696058 2696063 CAAAAT 2696053 2.55 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggacATGAAAaggtcgcacaactggagcgCAAAATcggcActccg 2696781 2697629 F yfhH yfhHp1 Sigma70 2696686 2696691 TTAATT 20 2696712 2696717 GAATAT 2696722 2.314 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTAATTcatggcaattagcggcaatgGAATATaaaaTtcact 2696781 2697629 F yfhH yfhHp3 Sigma70 2696690 2696695 TTCATG 19 2696715 2696720 TATAAA 2696725 2.61 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTCATGgcaattagcggcaatggaaTATAAAattcActcgc 2696781 2697629 F yfhH yfhHp5 Sigma70 2696690 2696695 TTCATG 21 2696717 2696722 TAAAAT 2696729 3.803 good homology 6.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTCATGgcaattagcggcaatggaataTAAAATtcactcGcgtgt 2710049 2710786 R yfiC yfiCp1 Sigma70 2711001 2711006 ATGGCG 19 2710976 2710981 TATCCT 2710970 1.94 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaATGGCGgtcgggcgagtgaaaccttTATCCTggaggGcttcc 2710049 2710786 R yfiC yfiCp2 Sigma70 2710942 2710947 TTCAAG 15 2710921 2710926 TACAGT 2710916 3.35 good homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgagTTCAAGttcggaaaaagtcgtTACAGTcatgTtctac 2710049 2710786 R yfiC yfiCp3 Sigma70 2710855 2710860 TTGTAT 17 2710832 2710837 TATTGT 2710827 5.146 high homology 5.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgtTTGTATggatatcgcttctcgggTATTGTtctcAcccgg 2710918 2712252 F srmB srmBp1 Sigma70 2710696 2710701 TTCCCA 15 2710717 2710722 GATCGT 2710728 2.08 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccgTTCCCActttcatcgcacagcGATCGTgagcaAcaaaa 2710918 2712252 F srmB srmBp2 Sigma70 2710750 2710755 ATCCAT 18 2710774 2710779 TAGACT 2710785 2.458 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtaaATCCATtacgacgaagcacggatgTAGACTgtgacAtgaaa 2710918 2712252 F srmB srmBp4 Sigma70 2710865 2710870 ATGAAG 17 2710888 2710893 TATAAT 2710898 5.116 high homology 2.06E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacagATGAAGattgcagccgtaacgtcTATAATcagcGcccca 2712461 2713342 R yfiE yfiEp1 Sigma70 2713386 2713391 ATGAAT 19 2713361 2713366 GATATT 2713356 2.6 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaATGAATgtttttatattctagattcGATATTttcgAtaggt 2712461 2713342 R yfiE yfiEp5 Sigma70 2713395 2713400 TTTAAA 21 2713368 2713373 TAGATT 2713363 3.633 good homology 0.000101039 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacaTTTAAAaaaatgaatgtttttatattcTAGATTcgatAttttc 2712461 2713342 R yfiE yfiEp6 Sigma70 2713439 2713444 TTGTTA 17 2713416 2713421 GACAGT 2713410 3.716 good homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcacTTGTTAtctcctctgttttggtaGACAGTacccgAcacgg 2712461 2713342 R yfiE yfiEp7 Sigma70 2713395 2713400 TTTAAA 16 2713373 2713378 TATTCT 2713366 4.553 high homology 1.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacaTTTAAAaaaatgaatgtttttaTATTCTagattcGatatt 2713445 2714032 F eamB eamBp1 Sigma70 2713210 2713215 CTGAAA 21 2713237 2713242 TATGAA 2713248 2.483 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggaCTGAAAactcctgctcaagctgctgaaTATGAAaagtcAccgtc 2713445 2714032 F eamB eamBp2 Sigma70 2713394 2713399 TTTTAA 15 2713415 2713420 TACTGT 2713426 2.85 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTTTAAatgttccgtgtcgggTACTGTctaccAaaaca 2715513 2716550 R yfiF yfiFp1 Sigma70 2716701 2716706 TTTCTA 20 2716675 2716680 GACATT 2716669 1.734 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgTTTCTAatatgttacatattatcgggGACATTgttccAgacaa 2715513 2716550 R yfiF yfiFp2 Sigma70 2716756 2716761 TTCATA 21 2716729 2716734 GAGACT 2716723 2.503 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtaTTCATAactaacctcgggatgagtaagGAGACTtatcgGcaacg 2715513 2716550 R yfiF yfiFp3 Sigma70 2716607 2716612 ATGGCG 18 2716583 2716588 TAATCT 2716578 2.608 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcATGGCGaaccgcgcggacttcgggTAATCTgcgcGcttcg 2715513 2716550 R yfiF yfiFp4 Sigma70 2716724 2716729 TTATCG 21 2716697 2716702 TAATAT 2716691 2.683 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagacTTATCGgcaacgacgccggtatgtttcTAATATgttacAtatta 2715513 2716550 R yfiF yfiFp6 Sigma70 2716671 2716676 TTGTTC 17 2716648 2716653 TATTCA 2716643 3.076 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggacaTTGTTCcagacaacaatctgtttTATTCAatagGtatga 2717245 2717943 F yfiP yfiPp1 Sigma70 2717061 2717066 TTGGAA 19 2717086 2717091 CATGAT 2717097 2.71 poor homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctTTGGAAttcgtagtataccgacgatCATGATtttcaAaaacg 2717245 2717943 F yfiP yfiPp2 Sigma70 2717147 2717152 TTCGAT 21 2717174 2717179 TAATCT 2717185 3.143 good homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccgTTCGATagctggctgaacgaatctcttTAATCTtaccgGggcgc 2717245 2717943 F yfiP yfiPp3 Sigma70 2717093 2717098 TTCAAA 17 2717116 2717121 CATGCT 2717127 3.146 good homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTCAAAaacggtcaggttgtcgaCATGCTtaatgGcgcag 2717245 2717943 F yfiP yfiPp4 Sigma70 2717061 2717066 TTGGAA 16 2717083 2717088 GATCAT 2717095 3.273 good homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctTTGGAAttcgtagtataccgacGATCATgattttCaaaaa 2720749 2722104 F pssA pssAp4 Sigma70 2720568 2720573 TTGATA 16 2720590 2720595 GATCGT 2720600 3.173 good homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacgTTGATAtccagctcgaagagggGATCGTtgggCttacg 2720749 2722104 F pssA pssAp5 Sigma70 2720613 2720618 TTGCCC 18 2720637 2720642 TAAGGT 2720648 3.758 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTGCCCagcgcgaggaatcatgagTAAGGTactggAaatgt 2720749 2722104 F pssA pssAp6 Sigma70 2720653 2720658 TTGACC 19 2720678 2720683 TATTAT 2720689 4.69 high homology 1.45E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaatgTTGACCacttaatcgggactggTGtTATTATtgcccGcttat 2722150 2722473 F yfiM yfiMp2 Sigma70 2722019 2722024 TTGCCG 19 2722044 2722049 TAAACT 2722055 4.62 high homology 1.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtaTTGCCGattatccggtgaaggttcgTAAACTcatccGccgtt 2722470 2723768 R kgtP kgtPp2 Sigma70 2723892 2723897 TTCCTG 17 2723869 2723874 TAAGGT 2723863 3.116 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattTTCCTGctaactaaattcatggtTAAGGTtgcatAatgat 2722470 2723768 R kgtP kgtPp3 Sigma70 2723947 2723952 TTCCAT 17 2723924 2723929 GAAATT 2723917 3.346 good homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccacTTCCATacgtgtcctccttaccaGAAATTtatcctTaagct 2722470 2723768 R kgtP kgtPp6 Sigma70 2723864 2723869 TTGCAT 20 2723838 2723843 TAATAT 2723831 4.664 high homology 1.04E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTGCATaatgatatgcaacaaatgtaTAATATttccttTacaaa 2722470 2723768 R kgtP kgtPp8 Sigma70 2723864 2723869 TTGCAT 18 2723840 2723845 TATAAT 2723834 6.228 high homology 1.04E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTGCATaatgatatgcaacaaatgTATAATatttcCtttac 2732325 2733056 R yfiH yfiHp1 Sigma70 2733103 2733108 TTGAGG 20 2733077 2733082 GAACAT 2733072 1.614 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaTTGAGGtgatgcgcgccgatttcgaaGAACATaaggAtgaag 2732325 2733056 R yfiH yfiHp2 Sigma70 2733208 2733213 TTGACC 19 2733183 2733188 CATGCT 2733177 2.26 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTGACCgccaggcgctacatgcaacCATGCTgcgtcTttatc 2732325 2733056 R yfiH yfiHp4 Sigma70 2733141 2733146 ATGGCA 18 2733117 2733122 TATGGT 2733110 3.038 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggaATGGCAtgcgcctattccacaagaTATGGTggagctGattga 2736970 2738091 R tyrA tyrAp1 Sigma70 2738279 2738284 ATTATT 17 2738256 2738261 TAATAT 2738250 3.506 good homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcaATTATTggtctgatgatcgaaagTAATATccacgAgggca 2739382 2739747 F yfiL yfiLp1 Sigma70 2739252 2739257 TTTCAA 19 2739277 2739282 TATTTA 2739288 2.23 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagtTTTCAAtccatatttcgtacattttTATTTAcacagGcaatt 2739382 2739747 F yfiL yfiLp2 Sigma70 2739303 2739308 TTTCAA 16 2739325 2739330 GATAAA 2739336 2.413 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcTTTCAAcccttacctctgtataGATAAAtttacActccc 2739382 2739747 F yfiL yfiLp4 Sigma70 2739166 2739171 TTTGCA 16 2739188 2739193 TATGCT 2739199 3.443 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcttTTTGCAtgatggcgatcctgttTATGCTcgtttGcgata 2739382 2739747 F yfiL yfiLp7 Sigma70 2739312 2739317 TTACCT 15 2739333 2739338 TACACT 2739345 3.95 good homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacccTTACCTctgtatagataaattTACACTccctttGaaaac 2739382 2739747 F yfiL yfiLp8 Sigma70 2739331 2739336 TTTACA 21 2739358 2739363 TATGCT 2739369 4.233 high homology 4.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTTACActccctttgaaaacaatccgcTATGCTttgaaAaagga 2739382 2739747 F yfiL yfiLp9 Sigma70 2739303 2739308 TTTCAA 18 2739327 2739332 TAAATT 2739337 4.338 high homology 8.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcTTTCAAcccttacctctgtatagaTAAATTtacaCtccct 2739382 2739747 F yfiL yfiLp10 Sigma70 2739343 2739348 TTGAAA 17 2739366 2739371 GAAAAA 2739377 4.426 high homology 1.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccctTTGAAAacaatccgctatgctttGAAAAAggagaAagaaa 2739897 2740415 F yfiR yfiRp1 Sigma70 2739836 2739841 TTTAAT 16 2739858 2739863 TATCGA 2739868 2.113 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatTTTAATgagcattctgaaaaaaTATCGAtgcaTttcga 2739897 2740415 F yfiR yfiRp2 Sigma70 2739713 2739718 CTGATG 15 2739734 2739739 TACGAT 2739746 2.28 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggggCTGATGaaaatgccagcacaaTACGATtaaattAattaa 2739897 2740415 F yfiR yfiRp3 Sigma70 2739807 2739812 TTGATG 20 2739833 2739838 TATTTT 2739844 3.584 good homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcacaTTGATGacggtcgcatgaaaaaaTGaTATTTTaatgaGcattc 2739897 2740415 F yfiR yfiRp4 Sigma70 2739807 2739812 TTGATG 18 2739831 2739836 GATATT 2739842 3.638 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaTTGATGacggtcgcatgaaaaaatGATATTttaatGagcat 2739897 2740415 F yfiR yfiRp5 Sigma70 2739748 2739753 TTAAAA 20 2739774 2739779 TAAGAT 2739784 3.784 good homology 5.89E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTAAAAccccacaaataaattaaacaTAAGATtttaCtcatt 2739897 2740415 F yfiR yfiRp6 Sigma70 2739739 2739744 TTAAAT 18 2739763 2739768 TAAATT 2739773 4.328 high homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgaTTAAATtaattaaaaccccacaaaTAAATTaaacAtaaga 2745984 2746775 F ypjD ypjDp2 Sigma70 2745843 2745848 TTGGCC 21 2745870 2745875 TATTTT 2745881 3.233 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacggTTGGCCgcaatcgcgacacatcatcagTATTTTgccgcAgtata 2745984 2746775 F ypjD ypjDp5 Sigma70 2745918 2745923 TTGGAG 17 2745941 2745946 TATACT 2745952 5.596 high homology 1.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacggTTGGAGcagcgttcacctgacgcTATACTgcttcTctttc 2746796 2748082 F yfjD yfjDp1 Sigma70 2746701 2746706 TTTAAC 20 2746727 2746732 GACACT 2746738 2.004 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTTAACgttgcgggcgcggtaattctGACACTggcctActtcg 2746796 2748082 F yfjD yfjDp2 Sigma70 2746575 2746580 ATGCAC 15 2746596 2746601 GAAAAT 2746606 2.32 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctacATGCACaacttatttagcatgGAAAATatcgAcaagg 2746796 2748082 F yfjD yfjDp3 Sigma70 2746636 2746641 TTGTCT 20 2746662 2746667 CATTAT 2746673 2.324 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTGTCTatattgtgctgctgtggggaCATTATcatgaAggatg 2746796 2748082 F yfjD yfjDp4 Sigma70 2746636 2746641 TTGTCT 18 2746660 2746665 GACATT 2746671 2.898 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTGTCTatattgtgctgctgtgggGACATTatcatGaagga 2748853 2749731 F nadK nadKp1 Sigma70 2748653 2748658 CTCAAT 18 2748677 2748682 GATAAT 2748689 2.438 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgcCTCAATctcttcgtgctgatccatGATAATttcttcCggggc 2748853 2749731 F nadK nadKp2 Sigma70 2748749 2748754 TTCGCA 20 2748775 2748780 TATTAT 2748785 3.404 good homology 8.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTCGCAttcatctcgctaacttcgctTATTATggggAtcagt 2752030 2752320 R yfjF yfjFp2 Sigma70 2752433 2752438 TTTCAT 20 2752407 2752412 TAAGTT 2752401 2.604 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgagTTTCATctcgactttgagtttaccaaTAAGTTgattgAactcg 2752030 2752320 R yfjF yfjFp3 Sigma70 2752399 2752404 TTGAAC 19 2752374 2752379 TAAAGA 2752369 3.11 poor homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTGAACtcgcctttggtcgcgtgttTAAAGAgctgGcggct 2752030 2752320 R yfjF yfjFp4 Sigma70 2752541 2752546 TTGACC 17 2752518 2752523 TATGAA 2752513 4.116 high homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accagTTGACCagtaaccaaagtattctTATGAAtctgGtggat 2752918 2753400 F smpB smpBp1 Sigma70 2752673 2752678 CTGAAC 16 2752695 2752700 TACATT 2752707 2.293 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence taagaCTGAACgtcattcactaacTGaTACATTtgctccGcgctg 2752918 2753400 F smpB smpBp3 Sigma70 2752754 2752759 TTCCAT 21 2752781 2752786 TATCAT 2752793 3.613 good homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaatTTCCATcaacaaaaatccaacaaataaTATCATttatccTgctgt 2752918 2753400 F smpB smpBp5 Sigma70 2752753 2752758 TTTCCA 19 2752778 2752783 TAATAT 2752789 4.02 high homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTTCCAtcaacaaaaatccaacaaaTAATATcatttAtcctg 2753615 2753977 F ssrA ssrAp2 Sigma70 2753495 2753500 TTGCCA 18 2753519 2753524 TAAAAA 2753529 4.658 high homology 3.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGCCAtcccattgcttaatcgaaTAAAAAtcagGctaca 2755666 2756622 R yfjH yfjHp1 Sigma70 2756796 2756801 TTCGCT 20 2756770 2756775 TATCGT 2756765 2.134 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcaTTCGCTttttgggaaaggtggcatcgTATCGTggtgAtttgg 2755666 2756622 R yfjH yfjHp2 Sigma70 2756711 2756716 TTGGAT 15 2756690 2756695 TAGTAT 2756685 4.04 high homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGGATaaccgctggtaaccgTAGTATtctaAcggcc 2755666 2756622 R yfjH yfjHp3 Sigma70 2756711 2756716 TTGGAT 18 2756687 2756692 TATTCT 2756682 4.988 high homology 1.74E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGGATaaccgctggtaaccgtagTATTCTaacgGccgat 2756666 2756878 F alpA alpAp1 Sigma70 2756515 2756520 TTCATA 20 2756541 2756546 TAAAAC 2756551 1.514 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttgTTCATAaaaatcattcagagaaatcaTAAAACcaccAtaaat 2756666 2756878 F alpA alpAp2 Sigma70 2756559 2756564 ATGTAT 18 2756583 2756588 TATTTT 2756593 2.848 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaATGTATtagaggttgtaaaaattgTATTTTtggtAcatgg 2756666 2756878 F alpA alpAp4 Sigma70 2756588 2756593 TTGGTA 16 2756610 2756615 TAAAGA 2756621 3.013 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTGGTAcatgggttttttgcctTAAAGAtacccAttaat 2756666 2756878 F alpA alpAp5 Sigma70 2756600 2756605 TTTTTT 17 2756623 2756628 TAATCT 2756633 3.886 good homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgggTTTTTTgccttaaagatacccatTAATCTctctGcaacc 2757007 2758416 F yfjI yfjIp1 Sigma70 2756965 2756970 TTGCTA 15 2756986 2756991 TAATTA 2756997 2.87 poor homology 0.000150733 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatTTGCTAaacaatttcttaattTAATTAaataaGaggca 2757007 2758416 F yfjI yfjIp2 Sigma70 2756944 2756949 TTAATA 19 2756969 2756974 TAAACA 2756981 2.96 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgccaTTAATAgcggaatagccatattTGcTAAACAatttctTaattt 2757007 2758416 F yfjI yfjIp3 Sigma70 2756965 2756970 TTGCTA 19 2756990 2756995 TAAATA 2757000 3.19 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatTTGCTAaacaatttcttaatttaatTAAATAagagGcattg 2757007 2758416 F yfjI yfjIp9 Sigma70 2756841 2756846 TTGATG 19 2756866 2756871 TAAACT 2756877 4.69 high homology 1.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgagaTTGATGagtggttatcacaacgctgTAAACTtatttGagggt 2758569 2759195 F yfjJ yfjJp1 Sigma70 2758327 2758332 TTAATT 20 2758353 2758358 CAAAAT 2758363 2.124 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaTTAATTagaatcttaatttcacaaaaCAAAATatttAtatct 2758569 2759195 F yfjJ yfjJp2 Sigma70 2758419 2758424 TTAATG 16 2758441 2758446 TAATTT 2758451 2.503 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTAATGacaatctaaaaggactTAATTTaagaGtaaaa 2758569 2759195 F yfjJ yfjJp3 Sigma70 2758487 2758492 TTGTCA 21 2758514 2758519 TACATA 2758525 2.563 poor homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcTTGTCAtcttgataggtaatatataggTACATAgacacAtcaga 2758569 2759195 F yfjJ yfjJp4 Sigma70 2758339 2758344 TTAATT 19 2758364 2758369 TATCTT 2758375 2.79 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatcTTAATTtcacaaaacaaaatatttaTATCTTcatggGgtaaa 2758569 2759195 F yfjJ yfjJp5 Sigma70 2758479 2758484 ATAAAA 18 2758503 2758508 TAATAT 2758513 3.308 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcggATAAAAgcttgtcatcttgataggTAATATatagGtacat 2758569 2759195 F yfjJ yfjJp6 Sigma70 2758495 2758500 TTGATA 17 2758518 2758523 TAGACA 2758529 4.506 high homology 5.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcTTGATAggtaatatataggtacaTAGACAcatcaGaacga 2759373 2761562 R yfjK yfjKp2 Sigma70 2761648 2761653 TTGCGA 15 2761627 2761632 TATTCA 2761622 2.99 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgtTTGCGAatctttgcatccacgTATTCAtttaTccagc 2759373 2761562 R yfjK yfjKp3 Sigma70 2761780 2761785 TTGTTC 19 2761755 2761760 TAATCT 2761750 3.11 poor homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgtTTGTTCtgttcgtgggctacgactcTAATCTactaAccgag 2763535 2763798 R yfjM yfjMp1 Sigma70 2763927 2763932 ATCCCA 21 2763900 2763905 TACAAT 2763895 2.683 poor homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggATCCCAtagaaacatatggggaaactcTACAATaataCccccc 2763535 2763798 R yfjM yfjMp2 Sigma70 2764009 2764014 TTCAAT 21 2763982 2763987 GATATT 2763975 2.953 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTCAATgaattgtctggattcagtctcGATATTtgccctGaccag 2763535 2763798 R yfjM yfjMp3 Sigma70 2764034 2764039 TTGATT 15 2764013 2764018 TATTTT 2764007 4.63 high homology 2.35E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaTTGATTggattgaatagttttTATTTTcaatgAattgt 2765732 2766595 F yfjP yfjPp1 Sigma70 2765543 2765548 ATAATG 21 2765570 2765575 TATGAT 2765581 1.903 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctcaATAATGtcaccaattttctggaaatccTATGATgccttTcccgg 2765732 2766595 F yfjP yfjPp2 Sigma70 2765494 2765499 TTTTCC 16 2765516 2765521 TAAATT 2765527 2.353 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacgTTTTCCcctgtgcacccacgacTAAATTtccccCccttt 2765732 2766595 F yfjP yfjPp4 Sigma70 2765521 2765526 TTCCCC 17 2765544 2765549 TAATGT 2765555 3.436 good homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaatTTCCCCccctttaaacttctcaaTAATGTcaccaAttttc 2765732 2766595 F yfjP yfjPp6 Sigma70 2765631 2765636 TTGAAA 18 2765655 2765660 CATTCT 2765666 3.988 good homology 1.02E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcaTTGAAAaaatcttcagatagatatCATTCTcctgaAcaatc 2765732 2766595 F yfjP yfjPp7 Sigma70 2765631 2765636 TTGAAA 15 2765652 2765657 TATCAT 2765664 5.43 high homology 1.63E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcaTTGAAAaaatcttcagatagaTATCATtctcctGaacaa 2767725 2768426 F yfjR yfjRp1 Sigma70 2767607 2767612 TTACAT 16 2767629 2767634 TAAAAA 2767639 3.043 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccccgTTACATctggcttttgcagaaaTAAAAAatagTttctg 2771340 2773043 F yfjW yfjWp3 Sigma70 2771259 2771264 ATGAAA 17 2771282 2771287 GATGAT 2771293 3.836 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtaATGAAAttggttgctagaaagtcGATGATttgttGcgtat 2771340 2773043 F yfjW yfjWp4 Sigma70 2771301 2771306 TTAAAA 17 2771324 2771329 TATACA 2771334 4.626 high homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgaTTAAAAatcaaccttaaaggcttTATACAtggaTttgct 2771340 2773043 F yfjW yfjWp5 Sigma70 2771269 2771274 TTGCTA 21 2771296 2771301 TATGAT 2771307 4.933 high homology 1.20E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attggTTGCTAgaaagtcgatgatttgttgcgTATGATtaaaaAtcaac 2776168 2780748 R ypjA ypjAp3 Sigma70 2780935 2780940 TTTAAA 20 2780909 2780914 GAATAT 2780904 2.924 poor homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTTAAAaaatgcctcattcttatgcgGAATATcatcAtttca 2776168 2780748 R ypjA ypjAp4 Sigma70 2780985 2780990 TTTCCT 17 2780962 2780967 TATCCA 2780956 3.086 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtaTTTCCTgaatggattgactttttTATCCAaccacActtca 2776168 2780748 R ypjA ypjAp7 Sigma70 2780883 2780888 TTTGAT 15 2780862 2780867 TACACT 2780855 3.66 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtcTTTGATgagcggtgaacacaaTACACTtgcgctGtctct 2783784 2783859 R ileY ileYp1 Sigma70 2784029 2784034 TTAACA 19 2784004 2784009 TATCGA 2783999 2.06 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTAACAtttgcttgttgactgcgagTATCGActttGcgaat 2783784 2783859 R ileY ileYp2 Sigma70 2784029 2784034 TTAACA 16 2784007 2784012 GAGTAT 2784000 2.423 poor homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aattaTTAACAtttgcttgttgacTGcGAGTATcgacttTgcgaa 2783784 2783859 R ileY ileYp4 Sigma70 2784055 2784060 ATGATA 18 2784031 2784036 TATTAA 2784025 3.018 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgATGATAactatagatagtgctaatTATTAAcatttGcttgt 2783784 2783859 R ileY ileYp6 Sigma70 2784055 2784060 ATGATA 21 2784028 2784033 TAACAT 2784021 3.243 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgATGATAactatagatagtgctaattatTAACATttgcttGttgac 2783784 2783859 R ileY ileYp7 Sigma70 2783930 2783935 ATAAAA 17 2783907 2783912 TATGAT 2783902 3.946 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgcATAAAAatctgttatttacatcaTATGATcatcAtgttt 2783784 2783859 R ileY ileYp8 Sigma70 2784091 2784096 TTAGAT 17 2784068 2784073 TATCAT 2784061 4.186 high homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTAGATacaaaatcattacaaagTATCATtgaatcGatgat 2793696 2794358 F csiR csiRp1 Sigma70 2793616 2793621 ATGGCT 16 2793638 2793643 TATTGT 2793649 2.703 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caattATGGCTcgctggaaaaagcTGgTATTGTggcaaAaaaca 2793696 2794358 F csiR csiRp4 Sigma70 2793511 2793516 TTTATT 17 2793534 2793539 GATGCT 2793545 3.566 good homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcggcTTTATTacctttgtgttggtagtGATGCTattccGtccgg 2794359 2794808 R ygaU ygaUp1 Sigma70 2794979 2794984 TTCGGT 17 2794956 2794961 TATTCT 2794951 3.346 good homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagggTTCGGTtgggcgttcattattaaTATTCTgttgAcactg 2794359 2794808 R ygaU ygaUp3 Sigma70 2794864 2794869 TTAACG 16 2794842 2794847 TACACT 2794836 3.513 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cggcgTTAACGcgccgcgttcctcTGcTACACTttctgAgtgtt 2795233 2795532 F ygaV ygaVp1 Sigma70 2795134 2795139 TTTCAG 20 2795160 2795165 TACGCT 2795171 2.274 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccagTTTCAGcttacgcttttactctcattTACGCTgctgaGgctgg 2795233 2795532 F ygaV ygaVp2 Sigma70 2795173 2795178 CTGGTA 18 2795197 2795202 TAGAGT 2795209 2.488 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaggCTGGTAtatgttgcatttttagttTAGAGTttacttAattta 2795233 2795532 F ygaV ygaVp4 Sigma70 2795188 2795193 TTTTTA 21 2795215 2795220 GAAAAT 2795226 2.653 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaTTTTTAgtttagagtttacttaatttaGAAAATacttaAataaa 2795233 2795532 F ygaV ygaVp5 Sigma70 2795158 2795163 TTTACG 15 2795179 2795184 TATGTT 2795190 3.03 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctcaTTTACGctgctgaggctggtaTATGTTgcattTttagt 2795233 2795532 F ygaV ygaVp7 Sigma70 2795127 2795132 CTGCCA 17 2795150 2795155 TACTCT 2795161 3.866 good homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagcCTGCCAgtttcagcttacgctttTACTCTcatttAcgctg 2797186 2797635 F ygaW ygaWp3 Sigma70 2797124 2797129 ATGAGA 20 2797150 2797155 TAACAT 2797162 2.144 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaATGAGAtccactgctttcatctccatTAACATcccattAcgctt 2797186 2797635 F ygaW ygaWp4 Sigma70 2797134 2797139 CTGCTT 21 2797161 2797166 TACGCT 2797173 2.213 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccaCTGCTTtcatctccattaacatcccatTACGCTtttattAaggag 2797186 2797635 F ygaW ygaWp6 Sigma70 2797034 2797039 TTTTAT 18 2797058 2797063 TAAAAA 2797070 2.958 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTTTATctacaaaaactgactaaaTAAAAAtttttcActaat 2797186 2797635 F ygaW ygaWp8 Sigma70 2796969 2796974 TTAAAA 18 2796993 2796998 TAAAAA 2797004 3.928 good homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTAAAAataaatcatatcggcatgTAAAAAtccacAatgta 2797186 2797635 F ygaW ygaWp11 Sigma70 2797075 2797080 TTGATT 17 2797098 2797103 TACGCT 2797109 5.146 high homology 3.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actaaTTGATTagtcatagccagcgataTACGCTatgcgAaaatg 2807639 2808376 F ygaZ ygaZp1 Sigma70 2807489 2807494 TTTCAT 18 2807513 2807518 TAAGCA 2807523 2.518 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaggtTTTCATcgtcaggaagccgcaaatTAAGCAatcaGcaacc 2807639 2808376 F ygaZ ygaZp2 Sigma70 2807558 2807563 TTAAGA 15 2807579 2807584 TAAGGT 2807589 2.66 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gggtgTTAAGAagcccatcagtcTGaTAAGGTtaagAtattc 2807639 2808376 F ygaZ ygaZp4 Sigma70 2807558 2807563 TTAAGA 21 2807585 2807590 TAAGAT 2807595 3.073 poor homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtgTTAAGAagcccatcagtctgataaggtTAAGATattcAttcag 2807639 2808376 F ygaZ ygaZp6 Sigma70 2807584 2807589 TTAAGA 19 2807609 2807614 TAATAT 2807620 3.24 good homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTAAGAtattcattcagtctatttaTAATATtaacaAtcgtt 2807639 2808376 F ygaZ ygaZp8 Sigma70 2807584 2807589 TTAAGA 17 2807607 2807612 TATAAT 2807617 5.156 high homology 1.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggTTAAGAtattcattcagtctattTATAATattaAcaatc 2812905 2814461 R gshA gshAp1 Sigma70 2814520 2814525 CTGCAC 19 2814495 2814500 TATGCT 2814489 2.36 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taggcCTGCACatatggtcaccattacagtTATGCTaattaAaacga 2812905 2814461 R gshA gshAp2 Sigma70 2814640 2814645 ATGGAT 20 2814614 2814619 TAATCT 2814607 2.534 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgggATGGATgcgcatctcgtggggaccggTAATCTttttttTgtgcc 2812905 2814461 R gshA gshAp5 Sigma70 2814607 2814612 TTTTTT 17 2814584 2814589 TACGCT 2814578 3.266 good homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcttTTTTTTgtgccttggtaaagcgtTACGCTatgttGcagtt 2812905 2814461 R gshA gshAp7 Sigma70 2814528 2814533 TTGTAG 21 2814501 2814506 TACAGT 2814494 3.523 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actaaTTGTAGgcctgcacatatggtcaccatTACAGTtatgctAattaa 2814534 2814962 R yqaA yqaAp2 Sigma70 2815166 2815171 TTGCTG 18 2815142 2815147 CATTAT 2815137 2.838 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTGCTGgcgcacctgggattacgcCATTATtttgAcgccg 2814534 2814962 R yqaA yqaAp4 Sigma70 2815166 2815171 TTGCTG 21 2815139 2815144 TATTTT 2815132 3.643 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTGCTGgcgcacctgggattacgccatTATTTTgacgccGtcgtc 2822513 2823598 R mltB mltBp1 Sigma70 2823659 2823664 TTCCTT 21 2823632 2823637 CATACT 2823625 2.193 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTCCTTgtgcggggcgtgatgctttacCATACTtgccccTggttg 2822513 2823598 R mltB mltBp2 Sigma70 2823659 2823664 TTCCTT 18 2823635 2823640 TACCAT 2823630 3.018 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTCCTTgtgcggggcgtgatgcttTACCATacttGcccct 2822513 2823598 R mltB mltBp3 Sigma70 2823782 2823787 TTTAAA 16 2823760 2823765 CAAAAT 2823754 3.053 poor homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaTTTAAAagtgttattttgatcgCAAAATgaaagAtaaat 2822513 2823598 R mltB mltBp4 Sigma70 2823824 2823829 TTTTAT 15 2823803 2823808 TAATCT 2823797 3.36 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgTTTTATtaccaaacggcaaccTAATCTaatcaGattga 2822513 2823598 R mltB mltBp5 Sigma70 2823756 2823761 ATGAAA 17 2823733 2823738 GAAAGT 2823728 3.806 good homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaATGAAAgataaatattttaatttGAAAGTttgaAtaaaa 2822513 2823598 R mltB mltBp6 Sigma70 2823767 2823772 TTGATC 17 2823744 2823749 TATTTT 2823738 4.746 high homology 0.000101039 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTGATCgcaaaatgaaagataaaTATTTTaatttGaaagt 2840595 2841065 R hycI hycIp1 Sigma70 2841137 2841142 ATGGAG 15 2841116 2841121 TATGCT 2841110 2.5 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggaATGGAGtacaatgctgttaagTATGCTgcatgAtattc 2840595 2841065 R hycI hycIp4 Sigma70 2841152 2841157 TTCGCA 15 2841131 2841136 TACAAT 2841124 3.8 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaacTTCGCAgcagcaggaatggagTACAATgctgttAagtat 2857782 2858438 F pphB pphBp1 Sigma70 2857722 2857727 CTGACG 20 2857748 2857753 TATAAT 2857759 3.494 good homology 2.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacaaCTGACGaataaaataaaaacaccctgTATAATaggaaAgctta 2857782 2858438 F pphB pphBp2 Sigma70 2857712 2857717 TTAACG 17 2857735 2857740 TAAAAA 2857747 3.686 good homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTAACGacaactgacgaataaaaTAAAAAcaccctGtataa 2858489 2859256 R ygbI ygbIp1 Sigma70 2859405 2859410 GTGAAT 21 2859378 2859383 TATGGT 2859372 2.273 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattGTGAATataagcgctggaagataacggTATGGTgatctGattca 2858489 2859256 R ygbI ygbIp2 Sigma70 2859430 2859435 TTTAAG 21 2859403 2859408 GAATAT 2859398 2.513 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttaaTTTAAGtgatattttgtttgatatTGtGAATATaagcGctgga 2858489 2859256 R ygbI ygbIp3 Sigma70 2859437 2859442 TTGTTA 20 2859411 2859416 GATATT 2859406 2.814 poor homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctccTTGTTAatttaagtgatattttgtttGATATTgtgaAtataa 2858489 2859256 R ygbI ygbIp4 Sigma70 2859430 2859435 TTTAAG 15 2859409 2859414 TATTGT 2859404 3.61 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttaaTTTAAGtgatattttgttTGaTATTGTgaatAtaagc 2858489 2859256 R ygbI ygbIp5 Sigma70 2859495 2859500 TTGACC 21 2859468 2859473 GAAACT 2859463 3.623 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcccaTTGACCctaagccaacgataccgacatGAAACTcagaTcccgt 2858489 2859256 R ygbI ygbIp6 Sigma70 2859413 2859418 TTGATA 18 2859389 2859394 GAAGAT 2859384 4.078 high homology 4.82E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtTTGATAttgtgaatataagcgctgGAAGATaacgGtatgg 2858489 2859256 R ygbI ygbIp7 Sigma70 2859365 2859370 TTCACA 18 2859341 2859346 TATTTT 2859335 4.088 high homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tctgaTTCACAtaaattaacattgtgTGtTATTTTatgtgAactaa 2859452 2860360 F ygbJ ygbJp1 Sigma70 2859357 2859362 TTAATT 19 2859382 2859387 TACCGT 2859393 2.38 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatgTTAATTtatgtgaatcagatcaccaTACCGTtatctTccagc 2859452 2860360 F ygbJ ygbJp2 Sigma70 2859361 2859366 TTTATG 21 2859388 2859393 TATCTT 2859399 2.423 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaTTTATGtgaatcagatcaccataccgtTATCTTccagcGcttat 2859452 2860360 F ygbJ ygbJp3 Sigma70 2859260 2859265 TTGCTC 18 2859284 2859289 CATTCT 2859295 2.468 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aacttTTGCTCcttcctttgtcctgcTGaCATTCTacgctAtttgc 2859452 2860360 F ygbJ ygbJp4 Sigma70 2859267 2859272 TTCCTT 16 2859289 2859294 TACGCT 2859299 2.663 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctccTTCCTTtgtcctgctgacattcTACGCTatttGcctgc 2859452 2860360 F ygbJ ygbJp5 Sigma70 2859334 2859339 TTCACA 18 2859358 2859363 TAATTT 2859369 3.798 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cttagTTCACAtaaaataacacacaaTGtTAATTTatgtgAatcag 2861615 2862253 F ygbL ygbLp3 Sigma70 2861398 2861403 TTAGCA 20 2861424 2861429 TATTGT 2861435 2.934 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcggTTAGCAgcggaaggcgtgacacgcttTATTGTcgcagGcggtg 2866915 2867541 R pcm pcmp2 Sigma70 2867696 2867701 TTGGCC 17 2867673 2867678 GATGCT 2867667 3.316 good homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctggaTTGGCCcgccgggcggtaaaTGtGATGCTggtccGgggac 2868277 2869326 R truD truDp1 Sigma70 2869534 2869539 TTATAC 21 2869507 2869512 TATCAT 2869501 2.393 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagggTTATACccttggcaacgtcgatgtcacTATCATcgctcAggcac 2868277 2869326 R truD truDp2 Sigma70 2869451 2869456 TTGCCG 16 2869429 2869434 TATGGA 2869424 2.423 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaTTGCCGaagatctcggctgccaTATGGAtgatGttaac 2868277 2869326 R truD truDp3 Sigma70 2869451 2869456 TTGCCG 20 2869425 2869430 GATGAT 2869420 2.824 poor homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaTTGCCGaagatctcggctgccatatgGATGATgttaAcgtga 2868277 2869326 R truD truDp4 Sigma70 2869361 2869366 TTGCCT 15 2869340 2869345 TACTCA 2869334 3.12 poor homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggaTTGCCTgtgaagcggtggcgcTACTCAttaagGcaaca 2869323 2869802 R ispF ispFp1 Sigma70 2869898 2869903 TTGGTC 20 2869872 2869877 TAAAGT 2869866 3.164 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcagTTGGTCgaaggccgtgcggataacatTAAAGTcacgcGcccgg 2871036 2871359 R ygbE ygbEp1 Sigma70 2871442 2871447 TTAGAT 15 2871421 2871426 GATATT 2871415 2.4 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTAGATctgttgagacagaacGATATTatcagAtcctg 2871036 2871359 R ygbE ygbEp2 Sigma70 2871433 2871438 TTGAGA 16 2871411 2871416 GATCCT 2871405 2.773 poor homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctgTTGAGAcagaacgatattatcaGATCCTgagacAccacc 2871036 2871359 R ygbE ygbEp3 Sigma70 2871442 2871447 TTAGAT 17 2871419 2871424 TATTAT 2871414 4.686 high homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTAGATctgttgagacagaacgaTATTATcagaTcctga 2871409 2872014 R cysC cysCp1 Sigma70 2872238 2872243 TTGACG 20 2872212 2872217 TATCAA 2872207 2.704 poor homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacttTTGACGagccgctggtgttagatcgtTATCAAcaaaAtccgg 2874603 2875640 F iap iapp3 Sigma70 2874453 2874458 TTAACG 20 2874479 2874484 TAATAT 2874490 3.194 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttccTTAACGgaataacgatttggcaaagcTAATATcaaaaAgtgct 2874603 2875640 F iap iapp4 Sigma70 2874534 2874539 TTGTTT 19 2874559 2874564 TACTAT 2874569 3.68 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaTTGTTTtagcgcagcggcagtttcaTACTATggcgGtaaaa 2874603 2875640 F iap iapp5 Sigma70 2874534 2874539 TTGTTT 17 2874557 2874562 CATACT 2874568 3.776 good homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaTTGTTTtagcgcagcggcagtttCATACTatggcGgtaaa 2882575 2885241 R ygcB ygcBp1 Sigma70 2885434 2885439 TTCCAG 19 2885409 2885414 GATATT 2885402 2.02 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaggTTCCAGatggacaaaagccccaggcGATATTtctatcAacctg 2882575 2885241 R ygcB ygcBp4 Sigma70 2885382 2885387 TTCGAA 18 2885358 2885363 TAGTCT 2885351 3.088 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cagcgTTCGAAcccaaacaattcgaaTGtTAGTCTcttcttTgcagg 2890236 2890601 F queD queDp1 Sigma70 2890077 2890082 TTAACA 20 2890103 2890108 TAATGA 2890114 2.014 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtctTTAACAacaaaatagattaaccaaccTAATGAaaaacAaatga 2890236 2890601 F queD queDp2 Sigma70 2890064 2890069 TTAGCA 19 2890089 2890094 TAGATT 2890100 2.59 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgttTTAGCAatagtctttaacaacaaaaTAGATTaaccaAcctaa 2890236 2890601 F queD queDp4 Sigma70 2890152 2890157 TTGCGC 15 2890173 2890178 GATAAT 2890184 3 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgattTTGCGCaacaaagtcgttttaGATAATgcgaaAaaaca 2890236 2890601 F queD queDp5 Sigma70 2890177 2890182 ATGCGA 17 2890200 2890205 TACTCT 2890211 3.116 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataATGCGAaaaaacagcctttccggTACTCTacggcGgtttt 2890679 2891950 F ygcN ygcNp1 Sigma70 2890624 2890629 TTCCCT 15 2890645 2890650 TAGGGT 2890656 2.43 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcaatTTCCCTtaagtaacgctaTGtTAGGGTgttgtGttctg 2894555 2895892 R ygcS ygcSp1 Sigma70 2896046 2896051 CTGAAA 20 2896020 2896025 CATTAT 2896015 1.814 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aagggCTGAAAaagcagttcgatcctaaTGgCATTATgaatAcgggt 2894555 2895892 R ygcS ygcSp2 Sigma70 2896030 2896035 ATCCTA 19 2896005 2896010 TACTAT 2895998 1.82 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttcgATCCTAatggcattatgaatacgggTACTATctatccGattga 2894555 2895892 R ygcS ygcSp3 Sigma70 2896058 2896063 TTGCTG 21 2896031 2896036 GATCCT 2896026 2.503 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggcgTTGCTGgaagggctgaaaaagcagttcGATCCTaatgGcatta 2895986 2897440 R ygcU ygcUp1 Sigma70 2897541 2897546 TTTATT 16 2897519 2897524 TATTTA 2897514 2.073 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggcaTTTATTagtggttgatggcggtTATTTAgtgcGctaac 2895986 2897440 R ygcU ygcUp2 Sigma70 2897491 2897496 TTTCTG 15 2897470 2897475 GATTAT 2897465 2.34 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtggTTTCTGttttctcttattaatGATTATtccaTtttta 2895986 2897440 R ygcU ygcUp4 Sigma70 2897478 2897483 TTATTA 16 2897456 2897461 TATTAT 2897450 3.473 good homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctcTTATTAatgattattccattttTATTATcaggaAggaat 2897510 2898295 R ygcW ygcWp1 Sigma70 2898332 2898337 TTACCT 20 2898306 2898311 GAAATT 2898299 2.014 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaagTTACCTttctttttttttgccttacgGAAATTggagctAactat 2897510 2898295 R ygcW ygcWp2 Sigma70 2898461 2898466 TTAAAA 20 2898435 2898440 CACACT 2898428 2.074 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTAAAAttatttgacaatacgaatatCACACTgtgattAcgatc 2897510 2898295 R ygcW ygcWp3 Sigma70 2898486 2898491 GTGAGA 20 2898460 2898465 TAAAAT 2898454 2.144 poor homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgtGTGAGAgtaatcacgcttctgcttttTAAAATtatttGacaat 2897510 2898295 R ygcW ygcWp4 Sigma70 2898394 2898399 CTAAAA 19 2898369 2898374 GATAAT 2898363 2.26 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatgCTAAAAattatctccagttaccagaGATAATgagaaAggtaa 2897510 2898295 R ygcW ygcWp5 Sigma70 2898377 2898382 TTACCA 16 2898355 2898360 TAACTT 2898348 2.693 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccagTTACCAgagataatgagaaaggTAACTTccctctCgcggg 2897510 2898295 R ygcW ygcWp6 Sigma70 2898414 2898419 TTAGCA 15 2898393 2898398 TAAAAA 2898387 2.85 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcacaTTAGCAgttatgcccttaTGcTAAAAAttatcTccagt 2897510 2898295 R ygcW ygcWp7 Sigma70 2898425 2898430 TTACGA 21 2898398 2898403 TATGCT 2898393 2.873 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaTTACGAtcacattagcagttatgccctTATGCTaaaaAttatc 2897510 2898295 R ygcW ygcWp10 Sigma70 2898462 2898467 TTTAAA 15 2898441 2898446 GAATAT 2898434 3.41 good homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcttTTTAAAattatttgacaatacGAATATcacactGtgatt 2898614 2899891 F yqcE yqcEp1 Sigma70 2898506 2898511 TTCCAT 21 2898533 2898538 TAGAGA 2898544 1.813 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgctTTCCATgttatttattatttcaattacTAGAGAcctgaGaaaag 2898614 2899891 F yqcE yqcEp2 Sigma70 2898364 2898369 TTCTCA 20 2898390 2898395 TAATTT 2898401 2.214 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacctTTCTCAttatctctggtaactggagaTAATTTttagcAtaagg 2898614 2899891 F yqcE yqcEp3 Sigma70 2898571 2898576 TTACTT 19 2898596 2898601 TACAAA 2898607 2.31 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggcTTACTTttctcttttttttgtctatTACAAAtgggaAtacga 2898614 2899891 F yqcE yqcEp4 Sigma70 2898393 2898398 TTTTTA 18 2898417 2898422 TAATGT 2898427 3.128 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gataaTTTTTAgcataagggcataacTGcTAATGTgatcGtaatc 2898614 2899891 F yqcE yqcEp5 Sigma70 2898364 2898369 TTCTCA 18 2898388 2898393 GATAAT 2898399 3.348 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacctTTCTCAttatctctggtaactggaGATAATttttaGcataa 2898614 2899891 F yqcE yqcEp6 Sigma70 2898462 2898467 TTTAAA 15 2898483 2898488 TACTCT 2898494 4.07 high homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTTAAAaagcagaagcgtgatTACTCTcacacAacacc 2902769 2903440 R ygcF ygcFp2 Sigma70 2903595 2903600 TTTCTT 18 2903571 2903576 TACGTT 2903565 2.648 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccatTTTCTTtattttcttctgacataaTACGTTactccCtttaa 2902769 2903440 R ygcF ygcFp3 Sigma70 2903580 2903585 CTGACA 21 2903553 2903558 TATTAA 2903548 2.653 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcttCTGACAtaatacgttactccctttaatTATTAAcgatAtgttt 2902769 2903440 R ygcF ygcFp4 Sigma70 2903531 2903536 TTTCTT 17 2903508 2903513 GAATGT 2903502 2.896 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTTCTTtaaacctgcctgtaacaGAATGTtaataAgacat 2902769 2903440 R ygcF ygcFp5 Sigma70 2903527 2903532 TTTAAA 19 2903502 2903507 TAATAA 2903496 3.02 poor homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttttcTTTAAAcctgcctgtaacagaaTGtTAATAAgacatGattgt 2902769 2903440 R ygcF ygcFp6 Sigma70 2903567 2903572 TTACTC 17 2903544 2903549 TATGTT 2903539 3.086 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacgTTACTCcctttaattattaacgaTATGTTtcgcAttttt 2902769 2903440 R ygcF ygcFp7 Sigma70 2903659 2903664 TTAAAA 20 2903633 2903638 TATAAT 2903628 4.894 high homology 3.92E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTAAAAactaatacagaaaaaataaaTATAATtttgGtgaat 2903733 2904605 F ygcG ygcGp1 Sigma70 2903645 2903650 TTTTCT 21 2903672 2903677 GAATAT 2903684 2.113 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTTCTgtattagtttttaatgataacGAATATaaaattAccgat 2903733 2904605 F ygcG ygcGp2 Sigma70 2903654 2903659 TTAGTT 15 2903675 2903680 TATAAA 2903687 2.71 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTAGTTtttaatgataacgaaTATAAAattaccGatgcc 2903733 2904605 F ygcG ygcGp4 Sigma70 2903527 2903532 TTTAAA 21 2903554 2903559 TAATAA 2903565 3.113 poor homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaggTTTAAAgaaaaatgcgaaacatatcgtTAATAAttaaaGggagt 2903733 2904605 F ygcG ygcGp5 Sigma70 2903505 2903510 TTAACA 18 2903529 2903534 TAAAGA 2903540 3.288 good homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttaTTAACAttctgttacaggcaggttTAAAGAaaaatGcgaaa 2903733 2904605 F ygcG ygcGp6 Sigma70 2903654 2903659 TTAGTT 17 2903677 2903682 TAAAAT 2903688 4.646 high homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtaTTAGTTtttaatgataacgaataTAAAATtaccgAtgccg 2907916 2908707 R mazG mazGp3 Sigma70 2908780 2908785 TTGGGT 19 2908755 2908760 TATTCT 2908750 3.47 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaTTGGGTagtgttactaactcacttcTATTCTggtcAcaggt 2907916 2908707 R mazG mazGp5 Sigma70 2908814 2908819 TTACAA 17 2908791 2908796 TAACGT 2908786 4.016 high homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggaaTTACAActcattaaagccaaaatTAACGTactgAttggg 2913079 2915835 F barA barAp1 Sigma70 2912878 2912883 TTTCCT 16 2912900 2912905 GATAAA 2912910 2.123 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTTCCTgcggcaataatccgggGATAAAtagcGttttg 2913079 2915835 F barA barAp2 Sigma70 2913001 2913006 TTGCAG 20 2913027 2913032 GAGACT 2913038 2.604 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgttTTGCAGagtagaattgcgccattggcGAGACTttctcAattta 2913079 2915835 F barA barAp3 Sigma70 2912878 2912883 TTTCCT 18 2912902 2912907 TAAATA 2912914 2.658 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTTCCTgcggcaataatccggggaTAAATAgcgtttTgccgt 2920557 2921006 R yqcA yqcAp5 Sigma70 2921101 2921106 TTGGCT 17 2921078 2921083 GAAAAT 2921072 4.756 high homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaatTTGGCTggcgcggtctgcttcctGAAAATgaaagGgttga 2922757 2923302 R syd sydp1 Sigma70 2923413 2923418 TTCCAA 21 2923386 2923391 GATGGT 2923381 2.283 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTCCAAgagtcaggcccgcaagtgcctGATGGTttgcAtaaga 2922757 2923302 R syd sydp3 Sigma70 2923366 2923371 ATGTTT 17 2923343 2923348 TAAACT 2923337 3.996 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagacATGTTTcaccgtcataaaccagaTAAACTaaacgAcaagt 2924330 2925694 F ygdH ygdHp2 Sigma70 2924258 2924263 TTGTGA 18 2924282 2924287 TATTGT 2924293 3.678 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaggTTGTGAaaggtcatcaggcagggcTATTGTaatcaAaggga 2939258 2939653 R ygdD ygdDp2 Sigma70 2939775 2939780 TTGTCA 21 2939748 2939753 TAAAAT 2939743 5.103 high homology 6.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTGTCAtgacagtcaggcagaactgggTAAAATagccGccttt 2940940 2941167 R ygdI ygdIp1 Sigma70 2941275 2941280 CTGGAT 21 2941248 2941253 TAACAT 2941242 2.363 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatCTGGATatcctggcgaagccgcgtaagTAACATatgctGaatag 2940940 2941167 R ygdI ygdIp2 Sigma70 2941239 2941244 CTGAAT 18 2941215 2941220 TAGCCT 2941210 2.668 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatgCTGAATagtgttaggcgttaatttTAGCCTgttaAtcaat 2940940 2941167 R ygdI ygdIp3 Sigma70 2941222 2941227 TTAATT 19 2941197 2941202 TATTAA 2941191 2.7 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcgTTAATTttagcctgttaatcaatacTATTAAgatttAttaat 2940940 2941167 R ygdI ygdIp4 Sigma70 2941218 2941223 TTTTAG 18 2941194 2941199 TAAGAT 2941188 2.978 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaTTTTAGcctgttaatcaatactatTAAGATttattAatcgc 2940940 2941167 R ygdI ygdIp9 Sigma70 2941222 2941227 TTAATT 16 2941200 2941205 TACTAT 2941195 3.503 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcgTTAATTttagcctgttaatcaaTACTATtaagAtttat 2941359 2942564 F csdA csdAp1 Sigma70 2941162 2941167 TTTCAT 20 2941188 2941193 TAATAA 2941199 2.274 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcttTTTCATcatcttctccttaaagcgatTAATAAatcttAatagt 2941359 2942564 F csdA csdAp2 Sigma70 2941224 2941229 TTAACG 17 2941247 2941252 TATGTT 2941257 3.756 good homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTAACGcctaacactattcagcaTATGTTacttAcgcgg 2941359 2942564 F csdA csdAp3 Sigma70 2941197 2941202 TTAATA 16 2941219 2941224 TAAAAT 2941229 4.613 high homology 1.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTAATAgtattgattaacaggcTAAAATtaacGcctaa 2943058 2943864 R csdL csdLp1 Sigma70 2943911 2943916 TTTATG 16 2943889 2943894 TAACCT 2943883 2.693 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTTATGcgtttagggtgagggaTAACCTcgcccTtttta 2943058 2943864 R csdL csdLp2 Sigma70 2944076 2944081 TTTACG 19 2944051 2944056 TAACCT 2944046 2.86 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgttTTTACGgatatgacagggtgaggggTAACCTcacaTcctga 2944103 2945200 R mltA mltAp3 Sigma70 2945242 2945247 TTTGTT 15 2945221 2945226 TATTTT 2945216 2.85 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcggTTTGTTatcttcgttgcgcctTATTTTttaaCctgaa 2944103 2945200 R mltA mltAp5 Sigma70 2945241 2945246 TTGTTA 21 2945214 2945219 TAACCT 2945208 3.623 good homology 0.000122182 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggtTTGTTAtcttcgttgcgccttatttttTAACCTgaagaAgagaa 2944103 2945200 R mltA mltAp6 Sigma70 2945326 2945331 TTGAAC 20 2945300 2945305 TATTTT 2945295 3.734 good homology 4.82E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGAACaaaaacaaatcactaaagccTATTTTttgtGcaaaa 2944103 2945200 R mltA mltAp8 Sigma70 2945260 2945265 TTTCAT 17 2945237 2945242 TATCTT 2945232 3.976 good homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gctcaTTTCATtaaacgcggcggttTGtTATCTTcgttGcgcct 2945779 2947032 R amiC amiCp1 Sigma70 2947215 2947220 TTCTGT 20 2947189 2947194 TAAATT 2947184 1.604 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTCTGTtttttcgcagggtgcaagtgTAAATTttatGcgaga 2945779 2947032 R amiC amiCp3 Sigma70 2947167 2947172 TTTTTA 18 2947143 2947148 TAAAAA 2947138 2.848 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgactTTTTTAtcagtaatgccgtgaataTAAAAAgaatGtttac 2945779 2947032 R amiC amiCp4 Sigma70 2947166 2947171 TTTTAT 15 2947145 2947150 TATAAA 2947140 3.02 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacttTTTTATcagtaatgccgtgaaTATAAAaagaAtgttt 2945779 2947032 R amiC amiCp5 Sigma70 2947248 2947253 TTTGCA 19 2947223 2947228 TATTTT 2947216 3.05 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctcTTTGCAtgattattcgaaattagtgTATTTTtattctGttttt 2945779 2947032 R amiC amiCp6 Sigma70 2947243 2947248 ATGATT 20 2947217 2947222 TATTCT 2947211 3.274 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgcATGATTattcgaaattagtgtattttTATTCTgttttTtcgca 2945779 2947032 R amiC amiCp7 Sigma70 2947117 2947122 ATGACA 17 2947094 2947099 TAAAGT 2947088 4.936 high homology 7.56E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attagATGACAgattatgcgtctttcgcTAAAGTttccgGtcaaa 2962383 2963177 R thyA thyAp1 Sigma70 2963257 2963262 TTCCAT 21 2963230 2963235 GATCAT 2963225 2.393 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attctTTCCATcccgatgattgtcgcgggTGtGATCATgatgGtctgg 2964210 2966456 R ptsP ptsPp2 Sigma70 2966580 2966585 TTTAAA 19 2966555 2966560 TAATGA 2966550 2.46 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcaTTTAAAcgtgatgtctaccgtagggTAATGAaagaGttcgc 2967684 2968373 F mutH mutHp1 Sigma70 2967553 2967558 TTGCGC 19 2967578 2967583 TAAAAA 2967589 2.31 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtgTTGCGCaactcgattaccggcaaccTAAAAAgcaatAtaaat 2967684 2968373 F mutH mutHp2 Sigma70 2967566 2967571 TTACCG 16 2967588 2967593 TATAAA 2967599 2.683 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgaTTACCGgcaacctaaaaagcaaTATAAAtcagaGaattg 2967684 2968373 F mutH mutHp3 Sigma70 2967492 2967497 ATAACA 17 2967515 2967520 TATTTT 2967526 3.326 good homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggATAACAtggtgtaagatcctgttTATTTTcagtgAccaga 2967684 2968373 F mutH mutHp4 Sigma70 2967466 2967471 TTCACA 21 2967493 2967498 TAACAT 2967504 3.723 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtttTTCACAgttatcccagctttctgtggaTAACATggtgtAagatc 2967684 2968373 F mutH mutHp7 Sigma70 2967602 2967607 TTGAAC 18 2967626 2967631 TACACT 2967636 4.948 high homology 2.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagaaTTGAACaacgcatgtggaaaaagtTACACTgcgaAtattc 2968442 2969155 F ygdQ ygdQp1 Sigma70 2968382 2968387 TTGACC 18 2968406 2968411 TAATTA 2968418 2.688 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctTTGACCtgccgctttccgggcataTAATTAccgcttCatttt 2968442 2969155 F ygdQ ygdQp3 Sigma70 2968382 2968387 TTGACC 16 2968404 2968409 TATAAT 2968414 5.313 high homology 2.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctTTGACCtgccgctttccgggcaTATAATtaccGcttca 2969293 2969511 F ygdR ygdRp1 Sigma70 2969209 2969214 TTTAAG 20 2969235 2969240 TATAAC 2969245 1.534 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacagTTTAAGattttcctgctttcaagataTATAACgtcgGtttat 2969293 2969511 F ygdR ygdRp3 Sigma70 2969225 2969230 TTTCAA 19 2969250 2969255 TAAACA 2969260 3.08 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgcTTTCAAgatatataacgtcggtttaTAAACAgactAttatc 2969293 2969511 F ygdR ygdRp4 Sigma70 2969225 2969230 TTTCAA 17 2969248 2969253 TATAAA 2969260 4.636 high homology 0.000128446 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgcTTTCAAgatatataacgtcggttTATAAAcagactAttatc 2969619 2970659 F tas tasp1 Sigma70 2969395 2969400 TTGACC 21 2969422 2969427 GATGAT 2969433 3.303 good homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGACCgatggaaaacctgaaattgatGATGATaccggGctggt 2969619 2970659 F tas tasp2 Sigma70 2969579 2969584 TTTATA 16 2969601 2969606 TATAAA 2969612 3.613 good homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattTTTATAttccttatgtcgtgatTATAAAaaggaAacggc 2969619 2970659 F tas tasp3 Sigma70 2969579 2969584 TTTATA 18 2969603 2969608 TAAAAA 2969613 3.718 good homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccattTTTATAttccttatgtcgtgattaTAAAAAggaaAcggct 2969619 2970659 F tas tasp4 Sigma70 2969560 2969565 TTCCCT 15 2969581 2969586 TATATT 2969591 3.93 good homology 8.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccttTTCCCTtccctctgccattttTATATTccttAtgtcg 2977965 2978657 R ygeA ygeAp1 Sigma70 2978714 2978719 TTGAGG 16 2978692 2978697 TATTCA 2978686 2.353 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggccgTTGAGGcgtttgtctcgttcctTATTCAgccttGttgcg 2980519 2981280 R kduD kduDp1 Sigma70 2981313 2981318 TTGCGC 20 2981287 2981292 TAAGGT 2981280 2.074 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagatTTGCGCtagttgtgggcataaacgaaTAAGGTattgttAtgatt 2980519 2981280 R kduD kduDp2 Sigma70 2981345 2981350 TTGATG 19 2981320 2981325 TAAAGA 2981314 2.96 poor homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtctTTGATGatatggaccatgtggccgtTAAAGAtttgcGctagt 2981310 2982146 R kduI kduIp1 Sigma70 2982179 2982184 TTTCTA 15 2982158 2982163 GATTAT 2982152 3.1 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgtTTTCTAttttcacgcttcactGATTATcggagGttgat 2981310 2982146 R kduI kduIp2 Sigma70 2982280 2982285 TTAACT 19 2982255 2982260 TATTTT 2982249 3.51 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccTTAACTtaaaaatgaaacattgtttTATTTTtaattGaaaac 2981310 2982146 R kduI kduIp5 Sigma70 2982246 2982251 TTGAAA 17 2982223 2982228 TATCAT 2982216 6.266 high homology 1.63E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTGAAAaccctagcccatgggcaTATCATccctttAtagag 2982433 2983614 R yqeF yqeFp2 Sigma70 2983678 2983683 TTTAAA 15 2983657 2983662 TAATTA 2983650 2.46 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTTAAAcaattaagataactgTAATTAacaatcAtttac 2982433 2983614 R yqeF yqeFp3 Sigma70 2983678 2983683 TTTAAA 19 2983653 2983658 TAACAA 2983646 2.51 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTTAAAcaattaagataactgtaatTAACAAtcatttActatt 2982433 2983614 R yqeF yqeFp4 Sigma70 2983698 2983703 TTGTGA 16 2983676 2983681 TAAACA 2983670 2.513 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcctTTGTGAtaaaaatcacttttttTAAACAattaaGataac 2982433 2983614 R yqeF yqeFp5 Sigma70 2983840 2983845 TTAAAC 16 2983818 2983823 TACCAT 2983812 2.583 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaaaTTAAACaaaatggagggcaattTACCATaaaccAggtta 2982433 2983614 R yqeF yqeFp6 Sigma70 2983693 2983698 ATAAAA 19 2983668 2983673 TAAGAT 2983663 2.59 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtgATAAAAatcactttttttaaacaatTAAGATaactGtaatt 2982433 2983614 R yqeF yqeFp7 Sigma70 2983669 2983674 TTAAGA 21 2983642 2983647 TACTAT 2983635 2.983 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaTTAAGAtaactgtaattaacaatcattTACTATtgcactGttaat 2983869 2985098 F yqeG yqeGp3 Sigma70 2983792 2983797 TTAATC 19 2983817 2983822 TATGGT 2983828 2.55 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggcgTTAATCtcccatacttaacctggttTATGGTaaattGccctc 2983869 2985098 F yqeG yqeGp4 Sigma70 2983826 2983831 TTGCCC 20 2983852 2983857 GATGAT 2983864 2.664 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaTTGCCCtccattttgtttaatttgtaGATGATacgttcAgataa 2983869 2985098 F yqeG yqeGp6 Sigma70 2983653 2983658 TTGTTA 21 2983680 2983685 TAAAAA 2983691 3.493 good homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTGTTAattacagttatcttaattgttTAAAAAaagtgAttttt 2985558 2986190 F yqeH yqeHp1 Sigma70 2985480 2985485 TTACAA 16 2985502 2985507 CATCAT 2985513 1.893 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caaaaTTACAAaatcatggtgtatTGaCATCATcaataAccaat 2985558 2986190 F yqeH yqeHp2 Sigma70 2985366 2985371 ATGCAA 18 2985390 2985395 TAATCA 2985401 2.538 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaccATGCAAgattaaatcagtgaaacaTAATCAtatttGataac 2985558 2986190 F yqeH yqeHp4 Sigma70 2985498 2985503 TTGACA 20 2985524 2985529 TATGCA 2985535 3.504 good homology 1.67E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgtaTTGACAtcatcaataaccaatgaaatTATGCAattatAtacgg 2985558 2986190 F yqeH yqeHp5 Sigma70 2985498 2985503 TTGACA 15 2985519 2985524 GAAATT 2985530 4.1 high homology 1.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgtaTTGACAtcatcaataaccaatGAAATTatgcaAttata 2986524 2987333 F yqeI yqeIp4 Sigma70 2986425 2986430 ATGATA 17 2986448 2986453 TATTTA 2986458 2.836 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcATGATAaatataaaattaatataTATTTAtgccGtaaat 2986524 2987333 F yqeI yqeIp5 Sigma70 2986425 2986430 ATGATA 15 2986446 2986451 TATATT 2986458 3.94 good homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcATGATAaatataaaattaataTATATTtatgccGtaaat 2986524 2987333 F yqeI yqeIp6 Sigma70 2986414 2986419 TTTCAA 21 2986441 2986446 TAATAT 2986453 4.203 high homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctcaTTTCAAtcatcatgataaatataaaatTAATATatatttAtgccg 2986524 2987333 F yqeI yqeIp7 Sigma70 2986414 2986419 TTTCAA 15 2986435 2986440 TAAAAT 2986445 4.9 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctcaTTTCAAtcatcatgataaataTAAAATtaatAtatat 2987957 2988382 R yqeK yqeKp1 Sigma70 2988449 2988454 TTAATT 21 2988422 2988427 TATTGA 2988416 2.233 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtaTTAATTttagtattgatggaaggtgatTATTGAacagtAacatc 2987957 2988382 R yqeK yqeKp3 Sigma70 2988570 2988575 TTTACA 20 2988544 2988549 CAAAAT 2988539 2.644 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTTACAtttctctcatttgattagagCAAAATccgaAttcgc 2987957 2988382 R yqeK yqeKp5 Sigma70 2988449 2988454 TTAATT 18 2988425 2988430 GATTAT 2988419 3.318 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtaTTAATTttagtattgatggaaggtGATTATtgaacAgtaac 2987957 2988382 R yqeK yqeKp6 Sigma70 2988472 2988477 TTGTTA 15 2988451 2988456 TATTAA 2988445 3.37 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatTTGTTAtcggcacattaggggTATTAAttttaGtattg 2987957 2988382 R yqeK yqeKp8 Sigma70 2988500 2988505 ATGGAG 17 2988477 2988482 TATATT 2988472 3.566 good homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accttATGGAGacgttacgtagaatgacTATATTtgttAtcggc 2987957 2988382 R yqeK yqeKp9 Sigma70 2988437 2988442 TTGATG 19 2988412 2988417 TAACAT 2988405 3.84 good homology 7.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtaTTGATGgaaggtgattattgaacagTAACATcgagtcAcggta 2987957 2988382 R yqeK yqeKp10 Sigma70 2988472 2988477 TTGTTA 18 2988448 2988453 TAATTT 2988443 3.898 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatTTGTTAtcggcacattaggggtatTAATTTtagtAttgat 2987957 2988382 R yqeK yqeKp11 Sigma70 2988420 2988425 TTGAAC 18 2988396 2988401 TAAAAA 2988390 4.118 high homology 7.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTGAACagtaacatcgagtcacggTAAAAAtgtgaGgtata 2989290 2989781 F ygeG ygeGp2 Sigma70 2989140 2989145 TTGTAG 19 2989165 2989170 TAATGA 2989176 1.84 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagtTTGTAGtgaacagtacttttaccaaTAATGAaaaatAtacca 2989290 2989781 F ygeG ygeGp3 Sigma70 2989062 2989067 TTAAGG 20 2989088 2989093 TAAGAT 2989099 1.964 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacaTTAAGGcatttatgtaatgtcgtaatTAAGATaactaAtaagg 2989290 2989781 F ygeG ygeGp4 Sigma70 2989073 2989078 ATGTAA 21 2989100 2989105 TAAGGT 2989110 2.373 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttATGTAAtgtcgtaattaagataactaaTAAGGTgaatAttagt 2989290 2989781 F ygeG ygeGp8 Sigma70 2989196 2989201 TTAAAA 18 2989220 2989225 TAAATA 2989231 3.138 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caagcTTAAAActcataatttaaaaaagaTAAATAtaaaaAtatca 2989290 2989781 F ygeG ygeGp9 Sigma70 2989209 2989214 TTTAAA 17 2989232 2989237 TATCAA 2989244 3.866 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cataaTTTAAAaaagataaatataaaaaTATCAAtgagtcAatcaa 2989290 2989781 F ygeG ygeGp10 Sigma70 2989188 2989193 ATGCAA 17 2989211 2989216 TAAAAA 2989222 3.906 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaATGCAAgcttaaaactcataattTAAAAAagataAatata 2990116 2991492 F ygeH ygeHp1 Sigma70 2990048 2990053 ATGAAT 19 2990073 2990078 TAAGCA 2990083 1.91 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaatATGAATagccataatttctattgctTAAGCAggatGcaaga 2990116 2991492 F ygeH ygeHp2 Sigma70 2990020 2990025 TTTCCT 21 2990047 2990052 TATGAA 2990058 2.563 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtaaTTTCCTgtagcgttaatgacacataaaTATGAAtagccAtaatt 2990116 2991492 F ygeH ygeHp3 Sigma70 2990035 2990040 ATGACA 16 2990057 2990062 CATAAT 2990067 2.813 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaATGACAcataaatatgaatagcCATAATttctAttgct 2990116 2991492 F ygeH ygeHp5 Sigma70 2990035 2990040 ATGACA 18 2990059 2990064 TAATTT 2990070 3.538 good homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaATGACAcataaatatgaatagccaTAATTTctattGcttaa 2990116 2991492 F ygeH ygeHp6 Sigma70 2989953 2989958 TTTCAG 18 2989977 2989982 TAAGAT 2989988 3.548 good homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggctaTTTCAGattacatcactgaattccTAAGATaaattAgtgaa 2990116 2991492 F ygeH ygeHp8 Sigma70 2989960 2989965 TTACAT 16 2989982 2989987 TAAATT 2989993 3.643 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagaTTACATcactgaattcctaagaTAAATTagtgaAcacaa 2990116 2991492 F ygeH ygeHp10 Sigma70 2989869 2989874 TTAAAA 15 2989890 2989895 TATAAA 2989901 3.99 good homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatcTTAAAAcagttaagagcatacTATAAAtcattAttttt 2991660 2991878 F ygeI ygeIp1 Sigma70 2991618 2991623 ATGTAA 20 2991644 2991649 TAAAAA 2991655 2.004 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgATGTAAagaccattggcctggacaatTAAAAAagggaGcttta 2991660 2991878 F ygeI ygeIp2 Sigma70 2991510 2991515 TTTATT 21 2991537 2991542 TATTTA 2991547 2.103 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcaatTTTATTatttagatgtatgcaactTGtTATTTAaacaAcagag 2991660 2991878 F ygeI ygeIp3 Sigma70 2991540 2991545 TTAAAC 21 2991567 2991572 GATATT 2991579 2.313 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttatTTAAACaacagagataaaaatatctaaGATATTcaccttAttgca 2991660 2991878 F ygeI ygeIp6 Sigma70 2991571 2991576 TTCACC 15 2991592 2991597 TAAAAT 2991603 4 good homology 5.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTCACCttattgcaagatattTAAAATgctctAgagtt 2991660 2991878 F ygeI ygeIp7 Sigma70 2991580 2991585 TTGCAA 16 2991602 2991607 TAGAGT 2991613 4.553 high homology 1.34E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTGCAAgatatttaaaatgctcTAGAGTtaaaaGtatga 2991660 2991878 F ygeI ygeIp8 Sigma70 2991590 2991595 TTTAAA 18 2991614 2991619 TATGAT 2991625 4.888 high homology 2.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTTAAAatgctctagagttaaaagTATGATgtaaaGaccat 2997158 2997913 R ygeR ygeRp2 Sigma70 2997986 2997991 TTTCCA 16 2997964 2997969 TATCAA 2997957 2.483 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgttTTTCCAgaagcaagagattgggTATCAAgaggctGgctgc 2997158 2997913 R ygeR ygeRp3 Sigma70 2998038 2998043 ATGATA 21 2998011 2998016 TAACCT 2998005 3.043 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgATGATActtccctttgccaaatgaaatTAACCTctttcTctatt 2997158 2997913 R ygeR ygeRp7 Sigma70 2997969 2997974 TTGGGT 17 2997946 2997951 TATGAT 2997940 4.476 high homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agagaTTGGGTatcaagaggctggcTGcTATGATaaggcGtcttg 3004284 3005474 F ygeW ygeWp2 Sigma70 3004149 3004154 TTAGTC 15 3004170 3004175 GATAAT 3004180 2.17 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaaaTTAGTCttttgcagccgcgcgGATAATtctgGcacac 3004284 3005474 F ygeW ygeWp3 Sigma70 3004157 3004162 TTGCAG 18 3004181 3004186 CACACT 3004191 2.848 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtcttTTGCAGccgcgcggataattcTGgCACACTtattGttagt 3004284 3005474 F ygeW ygeWp4 Sigma70 3004063 3004068 ATAAAA 17 3004086 3004091 TATTTT 3004096 3.416 good homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgATAAAAaaagccaaacgttttcgTATTTTacaaAcaacc 3005532 3006728 F ygeX ygeXp2 Sigma70 3005354 3005359 CTACAA 21 3005381 3005386 TATCAT 3005391 2.223 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctacCTACAAagaagccagctggaagccttaTATCATcgccGcgatg 3009483 3010415 F yqeA yqeAp1 Sigma70 3009305 3009310 TTACCT 18 3009329 3009334 GAACCT 3009341 2.248 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggttTTACCTgtcagggcgcgattgtcaGAACCTtatcccGtggtg 3010636 3012261 R yqeB yqeBp1 Sigma70 3012479 3012484 TTAAAA 21 3012452 3012457 GAGTCT 3012446 2.343 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTAAAAacgtaccgcaaggttgtcggcGAGTCTggttcAttaac 3010636 3012261 R yqeB yqeBp2 Sigma70 3012444 3012449 TTCATT 18 3012420 3012425 GAGAAT 3012413 2.878 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tctggTTCATTaaccgtttttctcaaTGtGAGAATgcgattGcacaa 3012309 3013079 R yqeC yqeCp1 Sigma70 3013131 3013136 TTACTT 21 3013104 3013109 TAATTT 3013098 2.803 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcgTTACTTcctgatggattaagttggggaTAATTTatcccAgagag 3012309 3013079 R yqeC yqeCp2 Sigma70 3013136 3013141 TTGCGT 15 3013115 3013120 TAAGTT 3013110 3.04 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gataaTTGCGTtacttcctgatggatTAAGTTggggAtaatt 3012309 3013079 R yqeC yqeCp4 Sigma70 3013131 3013136 TTACTT 19 3013106 3013111 GATAAT 3013099 3.13 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcgTTACTTcctgatggattaagttgggGATAATttatccCagaga 3012309 3013079 R yqeC yqeCp6 Sigma70 3013163 3013168 TTTATA 16 3013141 3013146 GATAAT 3013134 3.783 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTTATAggggctaataacgcctGATAATtgcgttActtcc 3012309 3013079 R yqeC yqeCp7 Sigma70 3013222 3013227 TTGATG 21 3013195 3013200 TACAGT 3013189 4.083 high homology 5.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattcTTGATGataatccggcagcggtaattaTACAGTcgatgGctgac 3013182 3013760 F mocA mocAp1 Sigma70 3013045 3013050 ATGACT 19 3013070 3013075 TACTTT 3013081 2.52 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaATGACTaatgccgatgggtcaactaTACTTTtcacgAgtctt 3013182 3013760 F mocA mocAp4 Sigma70 3013142 3013147 TTATCA 15 3013163 3013168 TATAAA 3013174 3.03 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcaaTTATCAggcgttattagccccTATAAAtaatgGaacca 3013182 3013760 F mocA mocAp9 Sigma70 3013045 3013050 ATGACT 17 3013068 3013073 TATACT 3013078 5.376 high homology 1.85E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaATGACTaatgccgatgggtcaacTATACTtttcAcgagt 3018562 3019341 F ygfM ygfMp1 Sigma70 3018381 3018386 TTCACA 19 3018406 3018411 GATGGT 3018417 2.39 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cagcgTTCACAgcgtgatggtcaatggTGtGATGGTctatgAagacc 3018562 3019341 F ygfM ygfMp2 Sigma70 3018429 3018434 TTAACT 17 3018452 3018457 TATGCA 3018464 3.516 good homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagtTTAACTtcgattgcgattccattTATGCAcaagccAgaaaa 3022373 3023773 F xanQ xanQp2 Sigma70 3022328 3022333 TTTACT 18 3022352 3022357 TACTTT 3022363 3.418 good homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTTACTaattcagatgatcaaattTACTTTaaaagGagtga 3022373 3023773 F xanQ xanQp3 Sigma70 3022245 3022250 TTGAAC 20 3022271 3022276 GAAAAT 3022282 3.574 good homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tctgtTTGAACgatgactaaatagtgacTGcGAAAATgagatAagccg 3026546 3027034 R ygfS ygfSp2 Sigma70 3027241 3027246 ATGCCG 20 3027215 3027220 TAAACT 3027209 2.914 poor homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgccATGCCGtggttgcagggcagcggaatTAAACTcgataAatggg 3026546 3027034 R ygfS ygfSp3 Sigma70 3027232 3027237 TTGCAG 18 3027208 3027213 GATAAA 3027203 3.058 poor homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtggTTGCAGggcagcggaattaaactcGATAAAtgggGcctga 3029389 3030837 F ygfU ygfUp1 Sigma70 3029334 3029339 TTTCAT 20 3029360 3029365 TACTCT 3029371 3.094 poor homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacagTTTCATtaacgtaaacggttgcttttTACTCTggcggGcgaaa 3029389 3030837 F ygfU ygfUp2 Sigma70 3029169 3029174 ATGATT 18 3029193 3029198 GAAAAT 3029204 3.238 good homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccagaATGATTaatgaaatatcaataTGaGAAAATtacagAtaatt 3029389 3030837 F ygfU ygfUp3 Sigma70 3029176 3029181 ATGAAA 17 3029199 3029204 TACAGA 3029211 3.286 good homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaATGAAAtatcaatatgagaaaatTACAGAtaattcCattgt 3029389 3030837 F ygfU ygfUp5 Sigma70 3029176 3029181 ATGAAA 21 3029203 3029208 GATAAT 3029215 3.683 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaATGAAAtatcaatatgagaaaattacaGATAATtccattGtcagg 3031087 3031635 F idi idip1 Sigma70 3030920 3030925 ATGGCC 20 3030946 3030951 TATGAT 3030956 1.964 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcaATGGCCattgaaagtcgcttcaaataTATGATgctaCttttt 3031087 3031635 F idi idip2 Sigma70 3031003 3031008 TTGTCG 17 3031026 3031031 TAATCA 3031036 3.166 good homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcggTTGTCGataaacgctcacttggtTAATCAtttcActctt 3031087 3031635 F idi idip3 Sigma70 3030906 3030911 CTGACT 17 3030929 3030934 GAAAGT 3030941 3.296 good homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttCTGACTgtgttgcaatggccattGAAAGTcgcttcAaatat 3031087 3031635 F idi idip4 Sigma70 3031025 3031030 TTAATC 19 3031050 3031055 TATAAT 3031061 3.92 good homology 2.39E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttggTTAATCatttcactcttcaattatcTATAATgatgaGtgatc 3031087 3031635 F idi idip5 Sigma70 3030927 3030932 TTGAAA 16 3030949 3030954 GATGCT 3030960 4.083 high homology 7.07E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggccaTTGAAAgtcgcttcaaatatatGATGCTactttTttaaa 3031087 3031635 F idi idip7 Sigma70 3030927 3030932 TTGAAA 21 3030954 3030959 TACTTT 3030965 4.353 high homology 5.62E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggccaTTGAAAgtcgcttcaaatatatgaTGcTACTTTtttaaAtggtt 3031679 3033196 R lysS lysSp1 Sigma70 3033301 3033306 TTAAAG 15 3033280 3033285 TAGAAA 3033274 2.31 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcaTTAAAGatctgcgcaccggggTAGAAAcccgcAacacg 3038438 3038845 R ygfX ygfXp1 Sigma70 3038961 3038966 TTTATT 15 3038940 3038945 GACGAT 3038935 2.28 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcatcTTTATTcgtctgctggaaTGtGACGATccggAcctgt 3040511 3041170 R yqfA yqfAp2 Sigma70 3041358 3041363 TTTTAT 21 3041331 3041336 TAAATT 3041324 3.193 good homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacaaTTTTATgtgattgaatttaaatgtcttTAAATTgaactcAcgcct 3040511 3041170 R yqfA yqfAp3 Sigma70 3041248 3041253 TTAGCT 19 3041223 3041228 TATTCT 3041217 3.33 good homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTAGCTaacaggtgttcactggaacTATTCTcagttAcgctg 3040511 3041170 R yqfA yqfAp4 Sigma70 3041234 3041239 TTCACT 15 3041213 3041218 TACGCT 3041207 3.34 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtgTTCACTggaactattctcagtTACGCTggagaGgtata 3040511 3041170 R yqfA yqfAp5 Sigma70 3041295 3041300 TTTAAT 19 3041270 3041275 TAGTCT 3041263 3.37 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaTTTAATttcatgatttttaggagatTAGTCTcaaatcAgaatt 3040511 3041170 R yqfA yqfAp9 Sigma70 3041308 3041313 TTGAAA 18 3041284 3041289 GATTTT 3041278 4.148 high homology 9.17E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttagTTGAAAtttcgcatttaatttcatGATTTTtaggaGattag 3041334 3041645 R yqfB yqfBp1 Sigma70 3041708 3041713 TTTCGG 18 3041684 3041689 TATCAT 3041677 2.538 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTTCGGtaaggtgagttttttcacTATCATaggctcCagatg 3041684 3043123 F bglA bglAp1 Sigma70 3041545 3041550 TTGAAG 20 3041571 3041576 GATGGT 3041581 2.654 poor homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgttTTGAAGtgcgattcagactcgtcgcgGATGGTgatgGtttta 3041684 3043123 F bglA bglAp2 Sigma70 3041636 3041641 TTGGCT 18 3041660 3041665 TAAGAA 3041670 3.168 good homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgtTTGGCTgcatggtactatttcctgTAAGAAttgaCtcatc 3041684 3043123 F bglA bglAp3 Sigma70 3041440 3041445 TTTTCA 17 3041463 3041468 TACGGT 3041473 3.336 good homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgtTTTTCAgtcagcgtatccagcgtTACGGTtgagGttgcg 3043180 3043923 R ygfF ygfFp2 Sigma70 3043988 3043993 TTGAAG 18 3043964 3043969 CAATCT 3043958 2.938 poor homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaTTGAAGattgagccagtttgttagCAATCTcaaagAtacgt 3043180 3043923 R ygfF ygfFp3 Sigma70 3044134 3044139 ATGACA 17 3044111 3044116 GACAGT 3044104 3.356 good homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcagATGACAaagtacaaaagtgctcaGACAGTcccctcGcccct 3049137 3050339 R visC visCp1 Sigma70 3050451 3050456 TTGTCG 19 3050426 3050431 GACGAT 3050419 1.85 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctggTTGTCGggcgcaacatcgggctgatGACGATggaattAttcac 3053634 3053963 F zapA zapAp2 Sigma70 3053540 3053545 TTGTCT 19 3053565 3053570 TAGTGT 3053576 3.07 poor homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggcTTGTCTcttctcatcagggtagctaTAGTGTcgcccCttcgc 3053634 3053963 F zapA zapAp3 Sigma70 3053540 3053545 TTGTCT 17 3053563 3053568 TATAGT 3053573 5.606 high homology 1.76E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agggcTTGTCTcttctcatcagggtagcTATAGTgtcgCccctt 3064299 3065195 R ygfI ygfIp1 Sigma70 3065290 3065295 TTTCTG 21 3065263 3065268 TATCTT 3065257 2.133 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTTCTGtaaaaccatgacgtaatcaccTATCTTtgctcGcggtt 3064299 3065195 R ygfI ygfIp2 Sigma70 3065310 3065315 TTGCCT 20 3065284 3065289 TAAAAC 3065279 2.434 poor homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgataTTGCCTcctttttctgtaattttctgTAAAACcatgAcgtaa 3064299 3065195 R ygfI ygfIp4 Sigma70 3065321 3065326 TTTACC 21 3065294 3065299 TAATTT 3065288 2.693 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgccTTTACCcgatattgcctcctttttctgTAATTTtctgtAaaacc 3064299 3065195 R ygfI ygfIp5 Sigma70 3065258 3065263 TTGCTC 16 3065236 3065241 TAGGCT 3065230 2.863 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctTTGCTCgcggtttcatcaaggaTAGGCTgactgAaacgg 3068187 3069266 R fbaA fbaAp2 Sigma70 3069306 3069311 TTGAAG 19 3069281 3069286 GACGAT 3069275 2.81 poor homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaacTTGAAGtatgacgagtataaggcccGACGATacaggAcaaga 3068187 3069266 R fbaA fbaAp3 Sigma70 3069433 3069438 TTTAGA 15 3069412 3069417 TACTCT 3069406 3.01 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgctTTTAGAgcacgcaatttttcaTACTCTaaataAttcga 3083942 3084073 R yqgB yqgBp3 Sigma70 3084195 3084200 TTCTCA 16 3084173 3084178 TACAGT 3084167 2.973 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgcTTCTCAggattcaagagctggtTACAGTtactgAggact 3087777 3088274 F yggI yggIp1 Sigma70 3087631 3087636 TTCGCT 15 3087652 3087657 TAATCT 3087663 3.19 good homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgtTTCGCTggaacatattgaacgTAATCTgatgaAaggtc 3087777 3088274 F yggI yggIp3 Sigma70 3087645 3087650 TTGAAC 19 3087670 3087675 TAAACT 3087681 4.84 high homology 8.21E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acataTTGAACgtaatctgatgaaaggtcgTAAACTgcgcgAaatag 3087777 3088274 F yggI yggIp4 Sigma70 3087740 3087745 TTGCAG 17 3087763 3087768 TATCCT 3087774 5.016 high homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctcTTGCAGtcatcttttcttcgctcTATCCTctgccGctatg 3089156 3089887 F rsmE rsmEp4 Sigma70 3089055 3089060 TTGCCA 18 3089079 3089084 TACACT 3089090 5.488 high homology 9.64E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcTTGCCAggcgcgaaagagctaaccTACACTagcggGattct 3090959 3091522 F yqgE yqgEp2 Sigma70 3090924 3090929 TTGCTT 17 3090947 3090952 GAACCT 3090958 3.736 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTGCTTttttgaaccaggaaacaGAACCTctgacAatgaa 3092122 3093102 R yggR yggRp3 Sigma70 3093226 3093231 TTGTTT 18 3093202 3093207 TAATTT 3093196 3.698 good homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggttTTGTTTtactgactgcaagcagcgTAATTTcttctGgagaa 3093120 3093824 F yggS yggSp1 Sigma70 3093068 3093073 TTTACA 20 3093094 3093099 CATATT 3093106 2.144 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcTTTACActaagggccacaatttcttcCATATTcatactAagatc 3093120 3093824 F yggS yggSp2 Sigma70 3093087 3093092 TTTCTT 15 3093108 3093113 GATCCT 3093119 2.19 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacaaTTTCTTccatattcatactaaGATCCTcggaaAatgaa 3093120 3093824 F yggS yggSp3 Sigma70 3093038 3093043 CTGCAC 19 3093063 3093068 TATGCT 3093073 2.36 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcgCTGCACaggtgtagatccgagacgtTATGCTttacActaag 3096580 3097587 R yggM yggMp2 Sigma70 3097633 3097638 TTACCC 18 3097609 3097614 TAAATT 3097603 3.228 good homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaTTACCCtaatgataatcaccggaaTAAATTattccGcgtga 3096580 3097587 R yggM yggMp3 Sigma70 3097646 3097651 TTGCCA 19 3097621 3097626 TAATCA 3097615 3.44 good homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtccaTTGCCAattttaattaccctaaTGaTAATCAccggaAtaaat 3096580 3097587 R yggM yggMp4 Sigma70 3097646 3097651 TTGCCA 17 3097623 3097628 GATAAT 3097617 5.726 high homology 1.67E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtccaTTGCCAattttaattaccctaatGATAATcaccgGaataa 3099829 3100155 R yggL yggLp1 Sigma70 3100347 3100352 TTCCAT 15 3100326 3100331 GAACCT 3100320 2.03 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgtaTTCCATatggcgaccgacTGgGAACCTtatgcGgaaca 3099829 3100155 R yggL yggLp2 Sigma70 3100304 3100309 TTGAAG 20 3100278 3100283 TATAAA 3100272 3.854 good homology 3.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcTTGAAGtgatgtcttctattgacggtTATAAAaacctGtcaga 3107575 3108282 F yqgA yqgAp2 Sigma70 3107333 3107338 TTAACT 20 3107359 3107364 TAGAAA 3107370 2.294 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcgTTAACTtcaccgcatgagcagtaacaTAGAAAgggaaAcgttt 3107575 3108282 F yqgA yqgAp3 Sigma70 3107333 3107338 TTAACT 15 3107354 3107359 TAACAT 3107365 3.74 good homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgcgTTAACTtcaccgcatgagcagTAACATagaaaGggaaa 3108612 3109148 R yghD yghDp1 Sigma70 3109314 3109319 TTACCT 16 3109292 3109297 GATACT 3109286 3.203 good homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggttTTACCTttgatcaaaaacgccaGATACTtcaccTccagc 3108612 3109148 R yghD yghDp2 Sigma70 3109260 3109265 TTGCCA 16 3109238 3109243 TAGTGT 3109233 3.913 good homology 4.32E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaactTTGCCAgtttcgacaaactgcgTAGTGTactgGcaacc 3111089 3111499 R yghG yghGp1 Sigma70 3111560 3111565 ATGATA 19 3111535 3111540 GACATT 3111530 1.84 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaATGATAaccacgtcattatcaaagtGACATTttaaCtctta 3111089 3111499 R yghG yghGp2 Sigma70 3111529 3111534 TTAACT 16 3111507 3111512 GAGATT 3111502 1.993 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acattTTAACTcttattaataaccttaGAGATTatttAccatg 3111089 3111499 R yghG yghGp3 Sigma70 3111568 3111573 TTGTTT 15 3111547 3111552 CATTAT 3111542 2.59 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTGTTTtaatgataaccacgtCATTATcaaaGtgaca 3111089 3111499 R yghG yghGp4 Sigma70 3111568 3111573 TTGTTT 18 3111544 3111549 TATCAA 3111539 2.888 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcaTTGTTTtaatgataaccacgtcatTATCAAagtgAcattt 3111089 3111499 R yghG yghGp6 Sigma70 3111564 3111569 TTTAAT 17 3111541 3111546 CAAAGT 3111536 3.306 good homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgtTTTAATgataaccacgtcattatCAAAGTgacaTtttaa 3111565 3112374 R pppA pppAp1 Sigma70 3112499 3112504 TTGCCC 21 3112472 3112477 TACAGA 3112466 2.463 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacatTTGCCCgatgcgcctgcttatcgggccTACAGAcggggAaagcc 3112572 3117134 R yghJ yghJp1 Sigma70 3117326 3117331 TTAATT 20 3117300 3117305 TAAAAA 3117294 2.704 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttgTTAATTttttgtttgttgaaatttcgTAAAAAtagccAgatag 3112572 3117134 R yghJ yghJp5 Sigma70 3117311 3117316 TTGAAA 19 3117286 3117291 TAGACA 3117281 3.75 good homology 8.81E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttgTTGAAAtttcgtaaaaatagccagaTAGACAtcgtAtaggg 3112572 3117134 R yghJ yghJp6 Sigma70 3117370 3117375 TTAAAA 15 3117349 3117354 TATAGT 3117342 4.82 high homology 1.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTAAAActaccaacaaatttaTATAGTtacgttGtgaaa 3117619 3119301 R glcA glcAp1 Sigma70 3119525 3119530 TTACTA 15 3119504 3119509 CAATAT 3119499 1.97 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcaTTACTAgcgggcctaaaacaaCAATATggacAtctta 3117619 3119301 R glcA glcAp2 Sigma70 3119347 3119352 TTACAA 20 3119321 3119326 TAAAGA 3119315 2.374 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcttaTTACAAccttaagtatatcaagcataTAAAGAtaataAgagac 3117619 3119301 R glcA glcAp4 Sigma70 3119401 3119406 CTGTTG 17 3119378 3119383 TATATT 3119372 2.926 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaCTGTTGctgtaaagtataacgccTATATTttacaGttcag 3117619 3119301 R glcA glcAp5 Sigma70 3119354 3119359 TTGCTT 16 3119332 3119337 TATCAA 3119327 3.063 poor homology 0.00012341 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcttTTGCTTattacaaccttaagtaTATCAAgcatAtaaag 3117619 3119301 R glcA glcAp7 Sigma70 3119398 3119403 TTGCTG 16 3119376 3119381 TATTTT 3119371 3.613 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactgTTGCTGtaaagtataacgcctaTATTTTacagTtcagt 3117619 3119301 R glcA glcAp9 Sigma70 3119398 3119403 TTGCTG 21 3119371 3119376 TACAGT 3119366 3.793 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactgTTGCTGtaaagtataacgcctatatttTACAGTtcagTcctct 3117619 3119301 R glcA glcAp10 Sigma70 3119417 3119422 TTGCGT 19 3119392 3119397 TAAAGT 3119386 3.86 good homology 7.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaTTGCGTtagcggcgtactgttgctgTAAAGTataacGcctat 3128200 3129216 F insH insHp1 Sigma70 3128126 3128131 ATGACG 18 3128150 3128155 TAAGGT 3128162 2.758 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtgATGACGgaaaagcgataaatgcctTAAGGTcattttTattaa 3128200 3129216 F insH insHp3 Sigma70 3128074 3128079 TTGCGT 17 3128097 3128102 TATCCA 3128108 3.126 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcgTTGCGTtcaatgaataaagggggTATCCAgtttgGatcgt 3128200 3129216 F insH insHp4 Sigma70 3128012 3128017 TTGCCA 18 3128036 3128041 TATGGT 3128047 4.968 high homology 1.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tttttTTGCCAcccacgcctgccagaTGaTATGGTccgtcCccgga 3129363 3130430 R yghQ yghQp2 Sigma70 3130595 3130600 TTGGCT 20 3130569 3130574 GAGATT 3130562 2.014 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaagaTTGGCTataacggcacaaaaattcttGAGATTgattccAgagcg 3129363 3130430 R yghQ yghQp3 Sigma70 3130640 3130645 ATGACT 16 3130618 3130623 CAAAAT 3130613 2.323 poor homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaccATGACTatgccgagctgcaggaCAAAATcggtGtcatg 3129363 3130430 R yghQ yghQp4 Sigma70 3130480 3130485 TTTAAC 15 3130459 3130464 TACTTT 3130453 2.56 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaagTTTAACttaaggctggcgggaTACTTTttactAtcaac 3129363 3130430 R yghQ yghQp6 Sigma70 3130505 3130510 TTGCCA 21 3130478 3130483 TAACTT 3130471 3.833 good homology 4.68E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTGCCAtcgtttctgaccgccgaagttTAACTTaaggctGgcggg 3130476 3131234 R yghR yghRp1 Sigma70 3131268 3131273 TTTCCT 20 3131242 3131247 GATGAT 3131236 2.374 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcTTTCCTgatcaccaaaatggatagggGATGATttaacGaatgg 3130476 3131234 R yghR yghRp2 Sigma70 3131280 3131285 TTCACG 18 3131256 3131261 CAAAAT 3131250 2.428 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcaaTTCACGccgcgctttcctgatcacCAAAATggataGgggat 3132153 3132845 F yghT yghTp1 Sigma70 3132112 3132117 ATAAAT 16 3132134 3132139 TAAATT 3132145 2.483 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accaaATAAATatttttaatggatattTAAATTaaaggAtatat 3132153 3132845 F yghT yghTp2 Sigma70 3132073 3132078 TTGACC 21 3132100 3132105 CATATT 3132111 2.583 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacaTTGACCtgaattacgctttcataaaaaCATATTaaccaAataaa 3132153 3132845 F yghT yghTp3 Sigma70 3132078 3132083 CTGAAT 18 3132102 3132107 TATTAA 3132112 2.908 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgacCTGAATtacgctttcataaaaacaTATTAAccaaAtaaat 3132153 3132845 F yghT yghTp5 Sigma70 3131958 3131963 TTGACA 16 3131980 3131985 GAAAAA 3131990 3.333 good homology 2.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTGACAtattacgttgattcacGAAAAAcccgGcagta 3132153 3132845 F yghT yghTp6 Sigma70 3132090 3132095 TTCATA 21 3132117 3132122 TATTTT 3132128 3.503 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgctTTCATAaaaacatattaaccaaataaaTATTTTtaatgGatatt 3132153 3132845 F yghT yghTp7 Sigma70 3132073 3132078 TTGACC 15 3132094 3132099 TAAAAA 3132106 3.8 good homology 9.23E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacaTTGACCtgaattacgctttcaTAAAAAcatattAaccaa 3132153 3132845 F yghT yghTp8 Sigma70 3132005 3132010 TTGAAT 19 3132030 3132035 GAATAT 3132042 3.99 good homology 1.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtaTTGAATattacgtggtccgtgctcaGAATATccgttcAacctt 3132153 3132845 F yghT yghTp9 Sigma70 3132061 3132066 TTAATT 17 3132084 3132089 TACGCT 3132095 4.036 high homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatggTTAATTgtgacattgacctgaatTACGCTttcatAaaaac 3132153 3132845 F yghT yghTp10 Sigma70 3132005 3132010 TTGAAT 17 3132028 3132033 CAGAAT 3132038 4.236 high homology 3.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtaTTGAATattacgtggtccgtgctCAGAATatccGttcaa 3132153 3132845 F yghT yghTp11 Sigma70 3131971 3131976 TTGATT 17 3131994 3131999 TAAATA 3132004 4.346 high homology 7.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttacgTTGATTcacgaaaaacccggcagTAAATAatgtAttgaa 3137738 3137986 R hybG hybGp1 Sigma70 3138047 3138052 TTGCGT 20 3138021 3138026 GATCGT 3138015 1.614 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcggTTGCGTgtcgataccggcgattcgctGATCGTcaaaaGtattg 3137738 3137986 R hybG hybGp2 Sigma70 3138220 3138225 TTGAGG 16 3138198 3138203 TAGTTT 3138193 2.233 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcgTTGAGGagagcgccgtccgtttTAGTTTtgaaAttgtc 3144472 3144759 R yghW yghWp1 Sigma70 3144868 3144873 TTTATC 18 3144844 3144849 TAAACA 3144838 2.598 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataggTTTATCtcttacgggattacgtctTAAACAagcatGaaaaa 3144472 3144759 R yghW yghWp2 Sigma70 3144804 3144809 TTGCCT 19 3144779 3144784 CAATAT 3144773 2.87 poor homology 0.000118571 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttctTTGCCTaaaatatcgctatataTGaCAATATatagcGaatga 3144472 3144759 R yghW yghWp6 Sigma70 3144804 3144809 TTGCCT 17 3144781 3144786 GACAAT 3144775 4.876 high homology 5.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttctTTGCCTaaaatatcgctatatatGACAATatataGcgaat 3145919 3146959 F gpr gprp2 Sigma70 3145788 3145793 TTTAAG 15 3145809 3145814 TATTTT 3145820 3.37 good homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTTAAGcaaagcataagcacgTATTTTtgcccAgtttt 3146999 3147493 R yqhA yqhAp2 Sigma70 3147550 3147555 TTGCGT 21 3147523 3147528 TACTGT 3147517 3.043 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgTTGCGTgctgtttactcaattgcgataTACTGTtgcccGtttta 3146999 3147493 R yqhA yqhAp5 Sigma70 3147561 3147566 TTGATT 17 3147538 3147543 TACTCA 3147532 4.026 high homology 0.000103081 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatgTTGATTtgctgttgcgtgctgttTACTCAattgcGatata 3146999 3147493 R yqhA yqhAp8 Sigma70 3147550 3147555 TTGCGT 19 3147525 3147530 TATACT 3147520 4.5 high homology 1.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgTTGCGTgctgtttactcaattgcgaTATACTgttgCccgtt 3147684 3148568 F yghA yghAp1 Sigma70 3147619 3147624 TTCCCT 21 3147646 3147651 TACCCT 3147657 2.673 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggTTCCCTtatcaacgcatcgagaacgtcTACCCTtaaagGacgtt 3147684 3148568 F yghA yghAp5 Sigma70 3147469 3147474 TTGCAT 18 3147493 3147498 TACATT 3147505 4.788 high homology 2.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacaTTGCATtttcaagaaaacgttccaTACATTcctgtcGtgtag 3152284 3153240 R yqhC yqhCp2 Sigma70 3153376 3153381 TTCATT 20 3153350 3153355 CAATAT 3153345 1.494 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttgTTCATTacttgctccctttgctgggcCAATATgaggGcagag 3152284 3153240 R yqhC yqhCp3 Sigma70 3153406 3153411 ATGCGG 16 3153384 3153389 TAAAGT 3153378 1.913 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagaATGCGGgttggggtgtgcagatTAAAGTtgttcAttact 3155672 3156598 F yqhG yqhGp1 Sigma70 3155616 3155621 TTAAAA 21 3155643 3155648 GATAAA 3155653 2.633 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctcTTAAAAgaacaactcatctatatccggGATAAAcgcaAcggag 3155672 3156598 F yqhG yqhGp2 Sigma70 3155532 3155537 TTCCCC 18 3155556 3155561 TACTCT 3155567 2.818 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atttaTTCCCCtcgcgtcccgcccgtTGtTACTCTtccttGttcag 3155672 3156598 F yqhG yqhGp3 Sigma70 3155474 3155479 ATGCAA 16 3155496 3155501 TAATGT 3155508 3.183 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaacATGCAAattctcccggtggcggTAATGTtccgctAccgga 3156649 3156906 F yqhH yqhHp2 Sigma70 3156605 3156610 TTAAAT 18 3156629 3156634 TAAATA 3156640 2.938 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTAAATaacaattagccggaacaaTAAATAaaaggGaacac 3156949 3159168 R ygiQ ygiQp2 Sigma70 3159297 3159302 CTGTTG 15 3159276 3159281 TAATCT 3159271 1.83 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcaaCTGTTGgtcaatccggtaccgTAATCTtcatActcgc 3156949 3159168 R ygiQ ygiQp3 Sigma70 3159271 3159276 TTCATA 16 3159249 3159254 GAGTAT 3159243 2.123 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatcTTCATActcgcccgaggagggcGAGTATggaatAccttt 3156949 3159168 R ygiQ ygiQp4 Sigma70 3159211 3159216 TTATAA 15 3159190 3159195 TATTTT 3159183 3.16 good homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggcTTATAAtccccggcctttgatTATTTTtttatcAtttct 3156949 3159168 R ygiQ ygiQp5 Sigma70 3159234 3159239 TTCGAT 18 3159210 3159215 TATAAT 3159204 4.558 high homology 1.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacctTTCGATttctctttcgttccggctTATAATccccgGccttt 3160766 3161503 R plsC plsCp1 Sigma70 3161616 3161621 TTGTTT 16 3161594 3161599 TAACAA 3161589 2.203 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccgTTGTTTattcatgcgttgcgatTAACAAtacgCttttc 3160766 3161503 R plsC plsCp2 Sigma70 3161559 3161564 ATGCCC 20 3161533 3161538 TACAAT 3161528 2.604 poor homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacaATGCCCtaacctgatttcaggtgacgTACAATgccaGtctct 3160766 3161503 R plsC plsCp4 Sigma70 3161613 3161618 TTTATT 19 3161588 3161593 TACGCT 3161582 3.07 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttgTTTATTcatgcgttgcgattaacaaTACGCTtttccAgagag 3161737 3163995 R parC parCp1 Sigma70 3164190 3164195 TTTCCG 15 3164169 3164174 GATTAT 3164164 2.56 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggtTTTCCGctgcataatccccagGATTATgtctAcagca 3161737 3163995 R parC parCp2 Sigma70 3164074 3164079 GTGACT 17 3164051 3164056 TAGTAT 3164045 3.046 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcctGTGACTcgacgcggcagataatgTAGTATctccgGcaata 3161737 3163995 R parC parCp4 Sigma70 3164084 3164089 TTGATC 20 3164058 3164063 GATAAT 3164052 3.554 good homology 9.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgTTGATCtcctgtgactcgacgcggcaGATAATgtagtAtctcc 3161737 3163995 R parC parCp5 Sigma70 3164034 3164039 TTGCCC 17 3164011 3164016 TAAGTT 3164005 4.126 high homology 0.00022263 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTGCCCctttgaaggctggcgaaTAAGTTgaggaAtcaga 3164133 3165740 R ygiS ygiSp3 Sigma70 3165798 3165803 TTGAGC 17 3165775 3165780 TATTGT 3165769 4.236 high homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTGAGCgaacaatgccacaggcgTATTGTtgttgGgctta 3164133 3165740 R ygiS ygiSp4 Sigma70 3165787 3165792 ATGCCA 21 3165760 3165765 TATAAT 3165753 4.523 high homology 1.24E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacaATGCCAcaggcgtattgttgttgggctTATAATttctccGgtaag 3165873 3166268 R mqsA mqsAp1 Sigma70 3166335 3166340 TTACAG 19 3166310 3166315 TACGGT 3166304 2.08 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcttgTTACAGgccaggtttatcttaaaatTACGGTaattcAtgacg 3165873 3166268 R mqsA mqsAp2 Sigma70 3166401 3166406 TTTATA 20 3166375 3166380 GATCAT 3166370 2.404 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgactTTTATAaaagcatgaccacctactctGATCATactaTctggc 3165873 3166268 R mqsA mqsAp3 Sigma70 3166454 3166459 TTTGGA 21 3166427 3166432 TATCAT 3166420 2.453 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttaggTTTGGAttttgatggtatgtgtaaTGtTATCATtggattAtcaga 3165873 3166268 R mqsA mqsAp5 Sigma70 3166474 3166479 TTAAAT 18 3166450 3166455 GATTTT 3166445 2.838 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccctgTTAAATgcagatgagttaggtttgGATTTTgatgGtatgt 3165873 3166268 R mqsA mqsAp6 Sigma70 3166402 3166407 TTTTAT 15 3166381 3166386 TACTCT 3166376 3 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgacTTTTATaaaagcatgaccaccTACTCTgatcAtacta 3165873 3166268 R mqsA mqsAp8 Sigma70 3166338 3166343 TTGTTA 16 3166316 3166321 TAAAAT 3166311 4.853 high homology 1.18E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTGTTAcaggccaggtttatctTAAAATtacgGtaatt 3165873 3166268 R mqsA mqsAp9 Sigma70 3166422 3166427 TTGGAT 17 3166399 3166404 TATAAA 3166393 4.966 high homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTGGATtatcagagagcgactttTATAAAagcatGaccac 3166771 3167253 R ygiV ygiVp1 Sigma70 3167380 3167385 TTGAGA 16 3167358 3167363 TAAAGA 3167352 3.033 poor homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacggTTGAGAttcagggtgaagtcgaTAAAGActggaAttctg 3166771 3167253 R ygiV ygiVp2 Sigma70 3167341 3167346 TTGAAA 19 3167316 3167321 CAAAGT 3167309 3.45 good homology 1.10E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTGAAAttgacgtcaaacagatccgCAAAGTaaatccGtaatt 3167306 3167698 R ygiW ygiWp1 Sigma70 3167763 3167768 TTCCCT 15 3167742 3167747 GACTAT 3167735 2.29 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTCCCTtaagaagttgttaagGACTATcttgttAaatgc 3167306 3167698 R ygiW ygiWp3 Sigma70 3167763 3167768 TTCCCT 18 3167739 3167744 TATCTT 3167733 3.098 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTCCCTtaagaagttgttaaggacTATCTTgttaaAtgctc 3167306 3167698 R ygiW ygiWp6 Sigma70 3167800 3167805 TTGTAA 17 3167777 3167782 TAAATT 3167771 5.376 high homology 3.20E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgTTGTAAcgcgctctgtacagcacTAAATTttattTttttc 3169901 3170233 R ygiZ ygiZp1 Sigma70 3170289 3170294 ATGAAA 20 3170263 3170268 TAATTA 3170257 1.534 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaaagATGAAAgtatcaacgtgtcatgtTGaTAATTAtaaatGgattt 3169901 3170233 R ygiZ ygiZp2 Sigma70 3170463 3170468 TTGCGA 20 3170437 3170442 TACTCT 3170431 3.244 good homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcttTTGCGAatttagcaaaagtctgatctTACTCTgactcAccgat 3169901 3170233 R ygiZ ygiZp3 Sigma70 3170304 3170309 TTGAAT 16 3170282 3170287 TATCAA 3170275 3.673 good homology 2.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggctTTGAATaagtaaaagatgaaagTATCAAcgtgtcAtgttg 3169901 3170233 R ygiZ ygiZp4 Sigma70 3170289 3170294 ATGAAA 18 3170265 3170270 GATAAT 3170259 4.048 high homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaagATGAAAgtatcaacgtgtcatgttGATAATtataaAtggat 3169901 3170233 R ygiZ ygiZp5 Sigma70 3170339 3170344 TTGGTT 17 3170316 3170321 GAAAAT 3170311 4.536 high homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgtTTGGTTcggtttttttggggattGAAAATatggCtttga 3170552 3171133 F mdaB mdaBp2 Sigma70 3170417 3170422 TTATCC 18 3170441 3170446 TAAGAT 3170451 2.618 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTATCCtgcatcggtgagtcagagTAAGATcagaCttttg 3170552 3171133 F mdaB mdaBp4 Sigma70 3170492 3170497 TTCACC 16 3170514 3170519 TACTAT 3170525 2.923 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaatTTCACCgtaccgctctgtgacgTACTATagtcgGcaaac 3170552 3171133 F mdaB mdaBp5 Sigma70 3170492 3170497 TTCACC 19 3170517 3170522 TATAGT 3170528 3.5 good homology 8.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaatTTCACCgtaccgctctgtgacgtacTATAGTcggcaAacgtc 3170552 3171133 F mdaB mdaBp7 Sigma70 3170397 3170402 TTGTCA 15 3170418 3170423 TATCCT 3170429 4.27 high homology 4.73E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtaTTGTCAttttcagaaaatattTATCCTgcatcGgtgag 3171164 3171478 F ygiN ygiNp2 Sigma70 3171065 3171070 ATAAAA 18 3171089 3171094 TATACT 3171100 3.948 good homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtgATAAAAatgcctgatgttccccgcTATACTgaagaAtatcg 3171526 3173418 R parE parEp1 Sigma70 3173465 3173470 TTTCTT 16 3173443 3173448 GACGAT 3173436 1.823 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgatTTTCTTggtctgcaccatctctGACGATcaactcGaatta 3171526 3173418 R parE parEp2 Sigma70 3173571 3173576 TTACCG 16 3173549 3173554 TACGCT 3173544 2.403 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggaTTACCGccaggcggtggcgtacTACGCTtcctGccgcc 3179641 3180429 R ygiD ygiDp1 Sigma70 3180491 3180496 TTCTTA 16 3180469 3180474 TATTGT 3180464 2.843 poor homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgggTTCTTActccgccgaacaagcgTATTGTgaggAtatca 3180572 3181345 F zupT zupTp1 Sigma70 3180408 3180413 CTGGCA 21 3180435 3180440 TATCCT 3180446 2.573 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence caatgCTGGCAtacgtgttgaagacatgaTGaTATCCTtaactAaaggt 3180572 3181345 F zupT zupTp2 Sigma70 3180502 3180507 ATAACA 18 3180526 3180531 TATTTT 3180536 2.718 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccggATAACAatgatgatgatcatcagtTATTTTgacgAtctgc 3180572 3181345 F zupT zupTp6 Sigma70 3180440 3180445 TTAACT 16 3180462 3180467 TATCCT 3180472 3.663 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatccTTAACTaaaggtgtcatttTGaTATCCTcacaAtacgc 3182862 3183152 F yqiC yqiCp2 Sigma70 3182784 3182789 TTCACA 18 3182808 3182813 TACCCT 3182818 3.528 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atagcTTCACAtaattctggtttatgactTACCCTtatcGcacta 3182862 3183152 F yqiC yqiCp3 Sigma70 3182799 3182804 TTTATG 17 3182822 3182827 TACAAT 3182832 4.596 high homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTTATGacttacccttatcgcacTACAATggcaCtcaac 3183436 3183987 F ygiL ygiLp1 Sigma70 3183400 3183405 TTCTCT 16 3183422 3183427 TATAAA 3183433 2.583 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTCTCTtttctacttatctttaTATAAAggaatAttatg 3183436 3183987 F ygiL ygiLp2 Sigma70 3183300 3183305 TTTACT 20 3183326 3183331 TAATTT 3183337 3.064 poor homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTTACTtaatcgatatttagataaacTAATTTtataaAaaaca 3183436 3183987 F ygiL ygiLp4 Sigma70 3183300 3183305 TTTACT 15 3183321 3183326 TAAACT 3183333 4.69 high homology 2.00E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTTACTtaatcgatatttagaTAAACTaattttAtaaaa 3183436 3183987 F ygiL ygiLp5 Sigma70 3183330 3183335 TTTATA 17 3183353 3183358 TATCAT 3183364 4.946 high homology 8.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaatTTTATAaaaaacacaaaataaaaTATCATatttcAatgat 3184209 3184574 F insC insCp1 Sigma70 3184130 3184135 CTGAAT 21 3184157 3184162 TAAATA 3184167 2.013 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccccCTGAATctccagacaaccaatatcactTAAATAagtgAtagtc 3184209 3184574 F insC insCp2 Sigma70 3184097 3184102 TTATTG 15 3184118 3184123 TAGACT 3184129 2.31 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTATTGttcattatccgttatTAGACTggcccCctgaa 3184209 3184574 F insC insCp4 Sigma70 3184031 3184036 ATGATA 15 3184052 3184057 TAAAAA 3184063 3.05 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaATGATAagtggatcagatgtaTAAAAAattaaAattaa 3184209 3184574 F insC insCp5 Sigma70 3184156 3184161 TTAAAT 18 3184180 3184185 TAGTTT 3184190 3.138 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcacTTAAATaagtgatagtcttaatacTAGTTTttagActagt 3184209 3184574 F insC insCp6 Sigma70 3184083 3184088 TTGATT 16 3184105 3184110 CATTAT 3184116 3.293 good homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgaaTTGATTaaaaatatttattgttCATTATccgttAttaga 3184209 3184574 F insC insCp7 Sigma70 3184065 3184070 TTAACC 17 3184088 3184093 TAAAAA 3184099 3.526 good homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTAACCacaataagcgaattgatTAAAAAtatttAttgtt 3190230 3190859 F yqiJ yqiJp3 Sigma70 3190154 3190159 TTAACA 18 3190178 3190183 GAAACT 3190189 3.798 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTAACAcagataaatgtaagcaagGAAACTattacAaagta 3190230 3190859 F yqiJ yqiJp5 Sigma70 3190125 3190130 TTCCAG 18 3190149 3190154 TATTAT 3190159 3.928 good homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttctcTTCCAGaacttctctaacctgTGtTATTATtaacAcagat 3190230 3190859 F yqiJ yqiJp7 Sigma70 3190043 3190048 TTTAAA 15 3190064 3190069 TATATT 3190076 4.69 high homology 2.21E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgccTTTAAAcataacgtgcgtaaaTATATTgtccccGatcac 3190230 3190859 F yqiJ yqiJp8 Sigma70 3190043 3190048 TTTAAA 17 3190066 3190071 TATTGT 3190077 5.206 high homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgccTTTAAAcataacgtgcgtaaataTATTGTccccgAtcaca 3193342 3194775 R rfaE rfaEp2 Sigma70 3194832 3194837 CTGGTG 16 3194810 3194815 TATTAT 3194804 2.263 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence agtggCTGGTGgaagaatgaagtaTGgTATTATcgcgcGcaaat 3194823 3197663 R glnE glnEp2 Sigma70 3197769 3197774 TTGCGA 20 3197743 3197748 GAACAT 3197738 2.084 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctaTTGCGAccgggcaacgcatcgaaattGAACATttccGtaatg 3194823 3197663 R glnE glnEp3 Sigma70 3197852 3197857 CTCAAT 19 3197827 3197832 TATGAT 3197820 2.38 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgaCTCAATactgttgctggcgggttacTATGATcctgtcGtcgcg 3194823 3197663 R glnE glnEp6 Sigma70 3197856 3197861 TTGACT 20 3197830 3197835 TACTAT 3197823 4.514 high homology 1.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTGACTcaatactgttgctggcgggtTACTATgatcctGtcgtc 3202243 3202611 R folB folBp1 Sigma70 3202690 3202695 TTCGTG 18 3202666 3202671 GATAAT 3202661 2.478 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTCGTGttcaacgatgaatctgtgGATAATacgcAcattt 3202243 3202611 R folB folBp3 Sigma70 3202732 3202737 TTCCAG 15 3202711 3202716 TAAGCT 3202705 2.95 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatcaTTCCAGgcgcgattgcactcaTAAGCTgttccGttttg 3202243 3202611 R folB folBp4 Sigma70 3202720 3202725 TTGCAC 19 3202695 3202700 GAAAAT 3202690 3.54 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgaTTGCACtcataagctgttccgttttGAAAATtcgtGttcaa 3202243 3202611 R folB folBp5 Sigma70 3202697 3202702 TTGAAA 16 3202675 3202680 GAATCT 3202670 4.053 high homology 7.43E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgttTTGAAAattcgtgttcaacgatGAATCTgtggAtaata 3202716 3203333 F plsY plsYp3 Sigma70 3202641 3202646 ATACCA 18 3202665 3202670 TATTAT 3202676 3.218 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accggATACCActtccggcgaaatgtgcgTATTATccacaGattca 3202716 3203333 F plsY plsYp4 Sigma70 3202578 3202583 TTACCG 16 3202600 3202605 TACAAT 3202610 3.423 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgaTTACCGaaagttgctctataaaTACAATatccAtcacg 3207552 3208565 R gcp gcpp2 Sigma70 3208682 3208687 TTGAAA 20 3208656 3208661 GAGTAT 3208650 3.304 good homology 1.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTGAAAgggacttttataagggtgagGAGTATacacgAggctt 3207552 3208565 R gcp gcpp3 Sigma70 3208619 3208624 TTTACA 17 3208596 3208601 TACACT 3208590 5.376 high homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagtTTTACAtcaacccgcattggtccTACACTgcgcgGtaata 3212989 3213495 R mug mugp1 Sigma70 3213535 3213540 TTCAAT 19 3213510 3213515 GATGTT 3213504 2.04 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtattTTCAATccgttatacttttcctggtGATGTTagaaaGgagta 3212989 3213495 R mug mugp2 Sigma70 3213560 3213565 CTGCTG 15 3213539 3213544 TATTTT 3213532 2.11 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgcCTGCTGtttttataaacaatgTATTTTcaatccGttata 3212989 3213495 R mug mugp3 Sigma70 3213571 3213576 TTACCG 15 3213550 3213555 TATAAA 3213545 2.85 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccaTTACCGcgcgcctgctgttttTATAAAcaatGtattt 3212989 3213495 R mug mugp5 Sigma70 3213571 3213576 TTACCG 17 3213548 3213553 TAAACA 3213543 3.196 good homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agccaTTACCGcgcgcctgctgtttttaTAAACAatgtAttttc 3212989 3213495 R mug mugp6 Sigma70 3213552 3213557 TTTATA 21 3213525 3213530 TATACT 3213518 4.823 high homology 1.04E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgttTTTATAaacaatgtattttcaatccgtTATACTtttcctGgtgat 3213749 3214513 R yqjH yqjHp1 Sigma70 3214575 3214580 TTAACA 21 3214548 3214553 TATTTA 3214542 2.423 poor homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgaTTAACAatcattatcatttgcgagtttTATTTAgatatAtctga 3213749 3214513 R yqjH yqjHp2 Sigma70 3214754 3214759 CTGATA 18 3214730 3214735 TAAAAA 3214724 3.058 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatatCTGATAtgagcgttcttgcaagtgTAAAAAtgattTttaaa 3213749 3214513 R yqjH yqjHp4 Sigma70 3214590 3214595 TTGCAT 17 3214567 3214572 CATTAT 3214561 4.316 high homology 7.56E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTGCATttatcatgattaacaatCATTATcatttGcgagt 3213749 3214513 R yqjH yqjHp5 Sigma70 3214590 3214595 TTGCAT 20 3214564 3214569 TATCAT 3214558 4.454 high homology 1.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTGCATttatcatgattaacaatcatTATCATttgcgAgtttt 3218937 3219269 R ygjH ygjHp2 Sigma70 3219318 3219323 TTGAGA 18 3219294 3219299 TAGTAA 3219287 2.798 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggaTTGAGAaaaacttttgctatagttTAGTAAaattttAcccta 3218937 3219269 R ygjH ygjHp3 Sigma70 3219305 3219310 TTGCTA 16 3219283 3219288 TACCCT 3219277 3.813 good homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacttTTGCTAtagtttagtaaaatttTACCCTaagggAggaag 3218937 3219269 R ygjH ygjHp4 Sigma70 3219318 3219323 TTGAGA 21 3219291 3219296 TAAAAT 3219286 5.003 high homology 8.98E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggaTTGAGAaaaacttttgctatagtttagTAAAATtttaCcctaa 3225823 3226893 F ygjJ ygjJp1 Sigma70 3225759 3225764 TTTATA 16 3225781 3225786 GATAAA 3225792 2.393 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgccTTTATAtttttataattacaacGATAAAaggctGtactt 3225823 3226893 F ygjJ ygjJp2 Sigma70 3225767 3225772 TTTATA 20 3225793 3225798 TACTTT 3225805 2.684 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTTATAattacaacgataaaaggctgTACTTTttctttAgctca 3225823 3226893 F ygjJ ygjJp3 Sigma70 3225718 3225723 TTCCCT 19 3225743 3225748 GAAAAT 3225755 2.98 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTCCCTcttcctggatgaggagaggGAAAATagtttcTgcctt 3225823 3226893 F ygjJ ygjJp4 Sigma70 3225601 3225606 TTGCGT 19 3225626 3225631 TATAAA 3225638 3.32 good homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggctTTGCGTggtggaaatacagtaaataTATAAAgggattAacggc 3225823 3226893 F ygjJ ygjJp5 Sigma70 3225591 3225596 TTCCTT 18 3225615 3225620 TACAGT 3225625 3.528 good homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTCCTTggctttgcgtggtggaaaTACAGTaaatAtataa 3225823 3226893 F ygjJ ygjJp7 Sigma70 3225601 3225606 TTGCGT 17 3225624 3225629 TATATA 3225635 3.596 good homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggctTTGCGTggtggaaatacagtaaaTATATAaagggAttaac 3231750 3232166 R higA higAp1 Sigma70 3232197 3232202 TTTCTT 15 3232176 3232181 TACTAA 3232170 2.09 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgaTTTCTTtaccgctgttcatcgTACTAAggggaAaaaat 3231750 3232166 R higA higAp5 Sigma70 3232352 3232357 TTAAAA 20 3232326 3232331 TAACTT 3232320 2.754 poor homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtcaTTAAAAgcagtattcccatctctggaTAACTTcaaatAtctgg 3231750 3232166 R higA higAp6 Sigma70 3232322 3232327 TTCAAA 15 3232301 3232306 TATGTT 3232296 3.69 good homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacTTCAAAtatctggataagcatTATGTTttcaAtgttg 3232761 3233897 R rlmG rlmGp1 Sigma70 3233984 3233989 TTGCTC 20 3233958 3233963 GAAAAA 3233953 1.584 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaTTGCTCataaccgcccacgaaaaagaGAAAAAgggtAtactc 3232761 3233897 R rlmG rlmGp2 Sigma70 3234015 3234020 CTGCTC 20 3233989 3233994 TAAGAT 3233983 1.704 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtagCTGCTCgggataaccctgaagataagTAAGATtgctcAtaacc 3232761 3233897 R rlmG rlmGp3 Sigma70 3233934 3233939 TTTTCA 18 3233910 3233915 TATCAT 3233904 3.688 good homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacccTTTTCAggggcaatgtcgaaatttTATCATtcaggAgggcc 3233982 3234485 F ygjP ygjPp3 Sigma70 3233889 3233894 GTGGCT 19 3233914 3233919 TAAAAT 3233924 2.4 poor homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tctaaGTGGCTcatcggccctcctgaaTGaTAAAATttcgAcattg 3233982 3234485 F ygjP ygjPp4 Sigma70 3233927 3233932 TTGCCC 15 3233948 3233953 GAGTAT 3233959 2.49 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgacaTTGCCCctgaaaagggtgcgtGAGTATaccctTtttct 3233982 3234485 F ygjP ygjPp5 Sigma70 3233927 3233932 TTGCCC 18 3233951 3233956 TATACC 3233962 2.518 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgacaTTGCCCctgaaaagggtgcgtgagTATACCcttttTctctt 3233982 3234485 F ygjP ygjPp6 Sigma70 3233927 3233932 TTGCCC 20 3233953 3233958 TACCCT 3233964 2.794 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgacaTTGCCCctgaaaagggtgcgtgagtaTACCCTttttcTctttt 3234562 3235254 F ygjQ ygjQp1 Sigma70 3234459 3234464 TTGTCG 19 3234484 3234489 GAAAAT 3234496 3.03 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcagTTGTCGcttgggcagaacaaaatctGAAAATgatgtcAggcgt 3234562 3235254 F ygjQ ygjQp5 Sigma70 3234501 3234506 TTATCT 17 3234524 3234529 TAAAAT 3234535 4.766 high homology 6.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcgTTATCTtttctttctttagcgccTAAAATcgaccTccccc 3236602 3237567 F alx alxp1 Sigma70 3236411 3236416 TTCATT 16 3236433 3236438 TACGAT 3236444 3.153 good homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaacTTCATTgccggtcgatcgtcatTACGATgtgtgAaaaaa 3236602 3237567 F alx alxp2 Sigma70 3236518 3236523 TTGCCG 18 3236542 3236547 TAAAAA 3236553 3.898 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaccTTGCCGgaaggcgaggtctatgcaTAAAAAgcagcGgctga 3236602 3237567 F alx alxp4 Sigma70 3236360 3236365 TTGACT 15 3236381 3236386 CATACT 3236392 4.03 high homology 3.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gaccaTTGACTggctgaatggtcTGtCATACTttgttAcctgc 3236602 3237567 F alx alxp5 Sigma70 3236360 3236365 TTGACT 17 3236383 3236388 TACTTT 3236393 5.036 high homology 2.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaccaTTGACTggctgaatggtctgtcaTACTTTgttaCctgca 3239215 3239766 R ygjV ygjVp1 Sigma70 3239831 3239836 TTGTTA 16 3239809 3239814 CATAAT 3239803 3.173 good homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgagTTGTTAataaaaaacggcgtttCATAATgtgaaGcgccg 3239215 3239766 R ygjV ygjVp3 Sigma70 3239831 3239836 TTGTTA 18 3239807 3239812 TAATGT 3239801 4.138 high homology 0.000101039 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgagTTGTTAataaaaaacggcgtttcaTAATGTgaagcGccgtt 3239215 3239766 R ygjV ygjVp4 Sigma70 3239867 3239872 TTCAAA 15 3239846 3239851 TAAAGT 3239841 4.45 high homology 4.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgatcTTCAAAagcggcgtaacgctaTAAAGTcgaaAtgagt 3239849 3241336 R uxaA uxaAp1 Sigma70 3241542 3241547 TTGTCG 19 3241517 3241522 TAGCTT 3241510 1.77 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgctTTGTCGgtatgctgactgacagccgTAGCTTcctgtcAtacac 3246991 3247359 F yqjC yqjCp5 Sigma70 3246918 3246923 TTAACA 18 3246942 3246947 GACAAT 3246953 3.648 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtggTTAACActaccgcttcgttgtctgGACAATcgttcCtttgt 3246991 3247359 F yqjC yqjCp6 Sigma70 3246875 3246880 TTGGTG 17 3246898 3246903 TATGAT 3246909 4.676 high homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcactTTGGTGatttcaccgtaactgtcTATGATtaatgAggcgg 3248584 3248976 F yqjF yqjFp1 Sigma70 3248443 3248448 TTGAAG 21 3248470 3248475 TAACAA 3248481 2.853 poor homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attttTTGAAGatttttgacagttttcctTGcTAACAAtcatcAttcac 3248584 3248976 F yqjF yqjFp2 Sigma70 3248453 3248458 TTGACA 18 3248477 3248482 CATCAT 3248488 3.598 good homology 2.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGACAgttttccttgctaacaatCATCATtcaccAcgttt 3249046 3250032 F yqjG yqjGp2 Sigma70 3248959 3248964 CTGAAT 20 3248985 3248990 TATACT 3248996 3.924 good homology 2.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctgCTGAATaaaaagtggtaagcacgcgcTATACTtaacgAtaaaa 3250326 3250691 F yhaH yhaHp1 Sigma70 3250227 3250232 TTTATT 15 3250248 3250253 TATTTA 3250259 2.24 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcacTTTATTaattccttgaacgaaTATTTActgccAtttca 3250326 3250691 F yhaH yhaHp3 Sigma70 3250254 3250259 CTGCCA 19 3250279 3250284 TAATTT 3250289 2.57 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaCTGCCAtttcattcacgtctattctTAATTTgctgCtttaa 3250326 3250691 F yhaH yhaHp4 Sigma70 3250265 3250270 TTCACG 21 3250292 3250297 TAAAAA 3250303 2.643 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTCACGtctattcttaatttgctgcttTAAAAAcaagtGattga 3250326 3250691 F yhaH yhaHp5 Sigma70 3250283 3250288 TTGCTG 21 3250310 3250315 CAAAAT 3250320 2.733 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatTTGCTGctttaaaaacaagtgattgagCAAAATtgagGcaaaa 3250326 3250691 F yhaH yhaHp6 Sigma70 3250112 3250117 CTGACA 21 3250139 3250144 TAGATT 3250150 2.883 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttatCTGACAtacaaaacattgtacattcaaTAGATTgcataAcccgc 3250326 3250691 F yhaH yhaHp8 Sigma70 3250250 3250255 TTTACT 17 3250273 3250278 TATTCT 3250285 5.266 high homology 3.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTTACTgccatttcattcacgtcTATTCTtaatttGctgct 3250933 3251289 F yhaI yhaIp1 Sigma70 3250799 3250804 TTACCT 16 3250821 3250826 TATTTA 3250832 1.903 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTACCTataaaaaataaccatgTATTTAtcttaAatatc 3250933 3251289 F yhaI yhaIp2 Sigma70 3250829 3250834 TTAAAT 21 3250856 3250861 GAAAAA 3250867 2.143 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTAAATatcaaaacctttataacatccGAAAAAgaaagAtacga 3250933 3251289 F yhaI yhaIp3 Sigma70 3250799 3250804 TTACCT 20 3250825 3250830 TATCTT 3250835 2.464 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTACCTataaaaaataaccatgtattTATCTTaaatAtcaaa 3250933 3251289 F yhaI yhaIp5 Sigma70 3250823 3250828 TTTATC 19 3250848 3250853 TAACAT 3250859 2.67 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtaTTTATCttaaatatcaaaacctttaTAACATccgaaAaagaa 3250933 3251289 F yhaI yhaIp7 Sigma70 3250770 3250775 TTTAAA 15 3250791 3250796 TATATA 3250801 3.3 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaTTTAAAatatttcaatgtcgtTATATAaattAcctat 3250933 3251289 F yhaI yhaIp8 Sigma70 3250779 3250784 TTTCAA 21 3250806 3250811 TAAAAA 3250818 3.373 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTTCAAtgtcgttatataaattacctaTAAAAAataaccAtgtat 3250933 3251289 F yhaI yhaIp10 Sigma70 3250748 3250753 ATGAAT 18 3250772 3250777 TAAAAT 3250783 4.778 high homology 2.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgaATGAATaatttactaatgtttattTAAAATatttcAatgtc 3250933 3251289 F yhaI yhaIp11 Sigma70 3250770 3250775 TTTAAA 17 3250793 3250798 TATAAA 3250805 4.926 high homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaTTTAAAatatttcaatgtcgttaTATAAAttacctAtaaaa 3251340 3252236 R yhaJ yhaJp1 Sigma70 3252296 3252301 CTGGAC 18 3252272 3252277 TATTCT 3252266 2.608 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggggCTGGACgctacattgttagccagaTATTCTgcccgGtatgt 3251340 3252236 R yhaJ yhaJp2 Sigma70 3252315 3252320 TTCCTT 21 3252288 3252293 TACATT 3252283 2.923 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttacTTCCTTttatggtaaggggctggacgcTACATTgttaGccaga 3251340 3252236 R yhaJ yhaJp4 Sigma70 3252330 3252335 TTGACC 16 3252308 3252313 TATGGT 3252302 3.943 good homology 6.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattcTTGACCtctctttacttcctttTATGGTaagggGctgga 3252341 3253042 F yhaK yhaKp1 Sigma70 3252257 3252262 TTGAAC 21 3252284 3252289 TAACAA 3252294 2.693 poor homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatTTGAACataccgggcagaatatctggcTAACAAtgtaGcgtcc 3252341 3253042 F yhaK yhaKp2 Sigma70 3252229 3252234 TTGGCC 17 3252252 3252257 GAAATT 3252263 3.256 good homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttctTTGGCCatttcgttctcattcagGAAATTtgaacAtaccg 3253363 3254673 R yhaM yhaMp1 Sigma70 3254703 3254708 TTTCTT 16 3254681 3254686 TAAGGT 3254675 2.853 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcatTTTCTTgatttacctgaaatttTAAGGTttttaAtatgt 3253363 3254673 R yhaM yhaMp2 Sigma70 3254799 3254804 TTTACA 20 3254773 3254778 TACAAA 3254767 2.864 poor homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctggTTTACAaagtaccagcattgcacaaaTACAAAgggatGtctct 3256307 3257671 R tdcG tdcGp1 Sigma70 3257791 3257796 TTGCCG 15 3257770 3257775 GAAATT 3257763 3.05 poor homology 0.000253537 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTGCCGaaagatgtgaagctgGAAATTgaagccAtcgca 3256307 3257671 R tdcG tdcGp2 Sigma70 3257877 3257882 TTGCCA 16 3257855 3257860 TAAGCA 3257848 3.243 good homology 7.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTGCCAccatcaacgaagtctaTAAGCAgttcttCgatga 3265402 3265620 F tdcR tdcRp1 Sigma70 3265264 3265269 TTGTCA 20 3265290 3265295 CATATT 3265301 2.284 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGTCAaaaaaaatgacggggataacCATATTttatgGcgata 3265402 3265620 F tdcR tdcRp2 Sigma70 3265342 3265347 CTGAGA 21 3265369 3265374 GATAAT 3265380 2.403 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggggCTGAGAccatatttcaagcaattaccgGATAATtaccaGgcaaa 3265402 3265620 F tdcR tdcRp3 Sigma70 3265264 3265269 TTGTCA 16 3265286 3265291 TAACCA 3265298 2.423 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGTCAaaaaaaatgacggggaTAACCAtattttAtggcg 3265402 3265620 F tdcR tdcRp4 Sigma70 3265206 3265211 TTAAAT 20 3265232 3265237 TAAAGT 3265243 3.844 good homology 5.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTAAATacctttaaatatcaacaagtTAAAGTataaaAatcag 3265402 3265620 F tdcR tdcRp5 Sigma70 3265215 3265220 TTTAAA 16 3265237 3265242 TATAAA 3265248 3.923 good homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataccTTTAAAtatcaacaagttaaagTATAAAaatcaGcataa 3265402 3265620 F tdcR tdcRp6 Sigma70 3265175 3265180 TTCAAT 20 3265201 3265206 TACAAT 3265212 3.964 good homology 3.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taactTTCAATactttccagagtatcgttatTACAATtaaatAccttt 3265402 3265620 F tdcR tdcRp7 Sigma70 3265215 3265220 TTTAAA 18 3265239 3265244 TAAAAA 3265250 4.028 high homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataccTTTAAAtatcaacaagttaaagtaTAAAAAtcagcAtaaac 3265876 3266415 F yhaB yhaBp2 Sigma70 3265821 3265826 CTGCGA 17 3265844 3265849 TATTGT 3265855 3.196 good homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaccCTGCGAggaaaataagcatctatTATTGTttgtcAtgatg 3265876 3266415 F yhaB yhaBp3 Sigma70 3265802 3265807 TTGATA 20 3265828 3265833 GAAAAT 3265838 4.184 high homology 2.10E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGATAgtgcgaaagaaccctgcgagGAAAATaagcAtctat 3285448 3286032 F yraH yraHp1 Sigma70 3285263 3285268 TTTGAA 15 3285284 3285289 TATCAA 3285294 2.27 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence actctTTTGAAtacatagaaaatTGaTATCAAtataAtgaaa 3285448 3286032 F yraH yraHp3 Sigma70 3285370 3285375 CTGTAT 21 3285397 3285402 TATATT 3285409 2.823 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgcCTGTATaatctttaaagatgttgaacaTATATTcacattAaatat 3285448 3286032 F yraH yraHp5 Sigma70 3285390 3285395 TTGAAC 19 3285415 3285420 GATTAT 3285427 3.56 good homology 8.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agatgTTGAACatatattcacattaaatatGATTATgtacttGttaca 3285448 3286032 F yraH yraHp6 Sigma70 3285280 3285285 TTGATA 15 3285301 3285306 TATCAA 3285313 3.73 good homology 5.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTGATAtcaatataatgaaaaTATCAAatatttGcatat 3285448 3286032 F yraH yraHp7 Sigma70 3285351 3285356 TTCAAT 18 3285375 3285380 TAATCT 3285386 4.278 high homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatgTTCAATgaaatatttctgcctgtaTAATCTttaaaGatgtt 3285448 3286032 F yraH yraHp8 Sigma70 3285264 3285269 TTGAAT 17 3285287 3285292 CAATAT 3285298 4.316 high homology 3.43E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcttTTGAATacatagaaaattgatatCAATATaatgaAaatat 3285448 3286032 F yraH yraHp9 Sigma70 3285390 3285395 TTGAAC 16 3285412 3285417 TATGAT 3285423 4.583 high homology 1.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agatgTTGAACatatattcacattaaaTATGATtatgtActtgt 3285448 3286032 F yraH yraHp10 Sigma70 3285351 3285356 TTCAAT 16 3285373 3285378 TATAAT 3285384 4.933 high homology 6.66E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatgTTCAATgaaatatttctgcctgTATAATctttaAagatg 3285448 3286032 F yraH yraHp11 Sigma70 3285264 3285269 TTGAAT 20 3285290 3285295 TATAAT 3285300 5.804 high homology 3.77E-07 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcttTTGAATacatagaaaattgatatcaaTATAATgaaaAtatca 3286112 3286807 F yraI yraIp1 Sigma70 3286007 3286012 TTAACG 20 3286033 3286038 TACGTT 3286044 1.784 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcgTTAACGtaacgctggattaccgttaaTACGTTagggcGttatc 3286112 3286807 F yraI yraIp2 Sigma70 3285935 3285940 TTGACC 15 3285956 3285961 TATCAA 3285967 3.03 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatgTTGACCtcatcgcttactacgTATCAAccgtaGttcca 3286112 3286807 F yraI yraIp3 Sigma70 3285897 3285902 TTATCA 21 3285924 3285929 TATTGT 3285934 3.173 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acggtTTATCAgatcccggcggaatccaaTGgTATTGTcaatGttgac 3290497 3291357 R rsmI rsmIp2 Sigma70 3291429 3291434 TTGAGG 19 3291404 3291409 GATATT 3291397 2.43 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGAGGgtaccataatgtatccagtGATATTttttttAcgcaa 3290497 3291357 R rsmI rsmIp4 Sigma70 3291445 3291450 TTCAAA 20 3291419 3291424 CATAAT 3291412 2.844 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggctTTCAAAcgagaaaatgttgagggtacCATAATgtatccAgtgat 3290497 3291357 R rsmI rsmIp5 Sigma70 3291429 3291434 TTGAGG 21 3291402 3291407 TATTTT 3291397 3.183 good homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaatgTTGAGGgtaccataatgtatccagTGaTATTTTttttAcgcaa 3290497 3291357 R rsmI rsmIp7 Sigma70 3291445 3291450 TTCAAA 17 3291422 3291427 TACCAT 3291416 4.426 high homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggctTTCAAAcgagaaaatgttgagggTACCATaatgtAtccag 3291422 3293458 F yraM yraMp2 Sigma70 3291196 3291201 TTGCAG 20 3291222 3291227 TATCCT 3291233 3.694 good homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTGCAGcaataaaccggtgtgacgagTATCCTcggcgGcaatc 3291422 3293458 F yraM yraMp3 Sigma70 3291353 3291358 TTCATT 21 3291380 3291385 TAATAT 3291391 3.803 good homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgtTTCATTgtgtcgtccgtattgccgattTAATATtgagcAttgcg 3293831 3294421 F diaA diaAp1 Sigma70 3293774 3293779 TTGAGT 16 3293796 3293801 TAATGA 3293808 2.273 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaggTTGAGTggattaaggatgccttTAATGAccactcAtaatt 3293831 3294421 F diaA diaAp2 Sigma70 3293789 3293794 ATGCCT 18 3293813 3293818 TAAGGT 3293824 3.028 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggATGCCTttaatgaccactcataatTAAGGTttaagGattag 3295120 3296160 R yraQ yraQp1 Sigma70 3296334 3296339 TTGATG 19 3296309 3296314 CATGCT 3296303 2.2 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccaTTGATGcgagagacgtggcgcgggtCATGCTggcagAgtcga 3295120 3296160 R yraQ yraQp2 Sigma70 3296224 3296229 TTCCCA 20 3296198 3296203 TATTCA 3296193 2.284 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTCCCAagaattgatagtgagcgtaaTATTCAcgcgCtcaat 3295120 3296160 R yraQ yraQp3 Sigma70 3296224 3296229 TTCCCA 17 3296201 3296206 TAATAT 3296196 4.906 high homology 8.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTCCCAagaattgatagtgagcgTAATATtcacGcgctc 3296233 3296868 R yraR yraRp2 Sigma70 3296966 3296971 ATGAGG 19 3296941 3296946 GATAAT 3296934 1.77 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attggATGAGGcgaatttcccacaatcgggGATAATtacctcAtggtc 3296233 3296868 R yraR yraRp3 Sigma70 3297015 3297020 TTAAAA 16 3296993 3296998 CATGCT 3296986 2.223 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgaTTAAAAcggcaattttcttactCATGCTtcctccGcgttg 3296233 3296868 R yraR yraRp4 Sigma70 3297071 3297076 TTTACG 20 3297045 3297050 TAAATT 3297040 3.074 poor homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggcTTTACGgaactcgtctgcgggtgaagTAAATTctgaAtcctc 3296233 3296868 R yraR yraRp6 Sigma70 3296975 3296980 TTGCAT 18 3296951 3296956 CACAAT 3296945 3.608 good homology 8.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttgTTGCATtggatgaggcgaatttccCACAATcggggAtaatt 3296996 3297514 F yhbO yhbOp1 Sigma70 3296923 3296928 TTAATA 21 3296950 3296955 GATTGT 3296961 2.603 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTAATAgaccatgaggtaattatccccGATTGTgggaaAttcgc 3297494 3297937 R yhbP yhbPp1 Sigma70 3298023 3298028 TTGTCG 15 3298002 3298007 TAAAGA 3297996 2.54 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcttaTTGTCGgcggtacggatcaagTAAAGAaaccaGggtgt 3297494 3297937 R yhbP yhbPp3 Sigma70 3298057 3298062 TTCGAC 17 3298034 3298039 TATAAA 3298029 3.066 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTCGACatccgtggtgatcccggTATAAAgcttAttgtc 3297988 3298290 F yhbQ yhbQp1 Sigma70 3297931 3297936 TTTCCA 16 3297953 3297958 TACTGT 3297965 3.173 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtgTTTCCAttgctgttctcttttaTACTGTgggcctGacctt 3297988 3298290 F yhbQ yhbQp2 Sigma70 3297924 3297929 ATGAGT 21 3297951 3297956 TATACT 3297961 3.433 good homology 5.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgATGAGTgtttccattgctgttctctttTATACTgtggGcctga 3297988 3298290 F yhbQ yhbQp3 Sigma70 3297949 3297954 TTTATA 15 3297970 3297975 TAACAT 3297981 3.82 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctctTTTATActgtgggcctgacctTAACATgcgacGcagac 3298277 3298780 R yhbS yhbSp1 Sigma70 3298995 3299000 TTGCGG 19 3298970 3298975 TACGCT 3298964 2.48 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgaTTGCGGcgcgtaaacaagatccggaTACGCTcttctTccagc 3299507 3300502 F yhbU yhbUp4 Sigma70 3299303 3299308 TTTACT 20 3299329 3299334 TATTTT 3299340 3.354 good homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgagtTTTACTccctgtttcaacaatcatccTATTTTgccatAtcaga 3299507 3300502 F yhbU yhbUp5 Sigma70 3299422 3299427 ATCAAA 21 3299449 3299454 TAAAAT 3299459 3.423 good homology 8.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttaaATCAAAaattgtcgcagcaaggttaacTAAAATcccaGttcgt 3299507 3300502 F yhbU yhbUp6 Sigma70 3299444 3299449 TTAACT 15 3299465 3299470 TAACAT 3299475 3.74 good homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaggTTAACTaaaatcccagttcgtTAACATttttGcgttt 3301470 3302477 F yhbW yhbWp1 Sigma70 3301426 3301431 TTTAAT 21 3301453 3301458 TAACAA 3301464 2.403 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tactcTTTAATgcagtattaaagattaatcggTAACAAagtgaGctgtt 3301470 3302477 F yhbW yhbWp2 Sigma70 3301415 3301420 TTTAAC 15 3301436 3301441 TATTAA 3301447 2.62 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaacTTTAACtactctttaatgcagTATTAAagattAatcgg 3301470 3302477 F yhbW yhbWp4 Sigma70 3301416 3301421 TTAACT 17 3301439 3301444 TAAAGA 3301451 3.696 good homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caactTTAACTactctttaatgcagtatTAAAGAttaatcGgtaac 3303993 3305882 R deaD deaDp2 Sigma70 3305955 3305960 TTTCAA 20 3305929 3305934 CATGAT 3305923 1.924 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acactTTTCAAtgaaaattgctgatcaatttCATGATgagttAtgtag 3303993 3305882 R deaD deaDp3 Sigma70 3305937 3305942 ATCAAT 16 3305915 3305920 TAGACT 3305910 2.353 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctgATCAATttcatgatgagttatgTAGACTggccGccatt 3303993 3305882 R deaD deaDp4 Sigma70 3305943 3305948 TTGCTG 18 3305919 3305924 TATGTA 3305913 2.368 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaaaTTGCTGatcaatttcatgatgagtTATGTAgactgGccgcc 3303993 3305882 R deaD deaDp8 Sigma70 3305972 3305977 TTGAGC 18 3305948 3305953 GAAAAT 3305942 3.228 good homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctactTTGAGCcggttcacacttttcaatGAAAATtgctgAtcaat 3318010 3319635 R yhbX yhbXp1 Sigma70 3319782 3319787 TTTAAT 20 3319756 3319761 CATCAT 3319750 1.764 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaTTTAATtactgagaacgcaatggccgCATCATttaaaAagaaa 3318010 3319635 R yhbX yhbXp2 Sigma70 3319816 3319821 CTGCGT 18 3319792 3319797 GATAAT 3319787 2.278 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgttCTGCGTaatgtttagagacgcattGATAATgttaTttaat 3318010 3319635 R yhbX yhbXp4 Sigma70 3319680 3319685 TTAAAC 16 3319658 3319663 TATATT 3319653 3.503 good homology 0.000122182 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTAAACattgttgataattgttTATATTggttGtgaac 3318010 3319635 R yhbX yhbXp5 Sigma70 3319691 3319696 CTGATA 17 3319668 3319673 GATAAT 3319662 4.126 high homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgtCTGATAtaaaattaaacattgttGATAATtgtttAtattg 3318010 3319635 R yhbX yhbXp6 Sigma70 3319704 3319709 TTGAAA 19 3319679 3319684 TAAACA 3319673 4.38 high homology 4.83E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagagTTGAAAaacatgtctgatataaaatTAAACAttgttGataat 3320755 3322092 R glmM glmMp1 Sigma70 3322195 3322200 TTGCCG 16 3322173 3322178 CATCAT 3322168 2.153 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtcaTTGCCGcaatgcaaggcgcgcaCATCATtcgtGttcat 3320755 3322092 R glmM glmMp3 Sigma70 3322286 3322291 TTGGTG 17 3322263 3322268 GATGAT 3322257 3.456 good homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTGGTGggtatgtcacgaaaatcGATGATtgggcAgctgc 3323023 3324957 R ftsH ftsHp2 Sigma70 3325106 3325111 TTCTCG 21 3325079 3325084 TATTGT 3325074 2.343 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gactcTTCTCGtgcacgttcgcgggaagtgtaTATTGTagcgAccggg 3323023 3324957 R ftsH ftsHp3 Sigma70 3325106 3325111 TTCTCG 19 3325081 3325086 TATATT 3325075 2.57 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gactcTTCTCGtgcacgttcgcgggaagtgTATATTgtagcGaccgg 3323023 3324957 R ftsH ftsHp4 Sigma70 3325029 3325034 TTGAAA 16 3325007 3325012 TATCCT 3325000 5.063 high homology 2.31E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagtTTGAAAgatgctggatatagagTATCCTgacgctGttttt 3326985 3328418 F dacB dacBp3 Sigma70 3326874 3326879 TTCACA 15 3326895 3326900 TACCCT 3326905 3.3 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTCACAttttgatagtcatttTACCCTgaagTtcccg 3326985 3328418 F dacB dacBp4 Sigma70 3326922 3326927 TTTACT 18 3326946 3326951 TAGTAT 3326956 3.938 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcgTTTACTttatagggcgttgcgccgTAGTATgacgGctcga 3330884 3331141 R rpmA rpmAp1 Sigma70 3331281 3331286 TTGTTG 16 3331259 3331264 GAAAGT 3331254 2.313 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaagTTGTTGctcacggtcgtggcgaGAAAGTtaaaAtcgtt 3330884 3331141 R rpmA rpmAp2 Sigma70 3331245 3331250 TTAAGT 17 3331222 3331227 TATCGT 3331216 3.336 good homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTAAGTttcgtcgtcgtaaacacTATCGTaagcaGcaggg 3330884 3331141 R rpmA rpmAp4 Sigma70 3331278 3331283 TTGCTC 19 3331253 3331258 TAAAAT 3331247 4.45 high homology 2.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttgTTGCTCacggtcgtggcgagaaagtTAAAATcgttaAgtttc 3331732 3332703 F ispB ispBp1 Sigma70 3331631 3331636 GTGCCA 20 3331657 3331662 TATATT 3331667 2.324 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatctGTGCCAttttttcagtacaatcacccTATATTcctaAccata 3331732 3332703 F ispB ispBp3 Sigma70 3331500 3331505 TTTCAA 21 3331527 3331532 TATTCA 3331538 2.903 poor homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctTTTCAAtgattcagagtgcgctataaaTATTCAcaataGggcgc 3331732 3332703 F ispB ispBp5 Sigma70 3331624 3331629 TTTATC 16 3331646 3331651 TACAAT 3331658 3.433 good homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taacgTTTATCtgtgccattttttcagTACAATcaccctAtattc 3331732 3332703 F ispB ispBp6 Sigma70 3331500 3331505 TTTCAA 17 3331523 3331528 TAAATA 3331534 3.556 good homology 0.000389752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctTTTCAAtgattcagagtgcgctaTAAATAttcacAatagg 3331732 3332703 F ispB ispBp9 Sigma70 3331500 3331505 TTTCAA 15 3331521 3331526 TATAAA 3331532 3.8 good homology 0.000128446 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacctTTTCAAtgattcagagtgcgcTATAAAtattcAcaata 3332931 3333209 F sfsB sfsBp2 Sigma70 3332782 3332787 CTGAAA 20 3332808 3332813 TATATT 3332818 3.544 good homology 7.34E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacacCTGAAAaatagggatgtgcatctttaTATATTctgaAtattc 3332931 3333209 F sfsB sfsBp3 Sigma70 3332843 3332848 TTTAGA 18 3332867 3332872 TATAGT 3332877 4.088 high homology 7.34E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacttTTTAGAgcaataggccatcaggagTATAGTgatgCtcgac 3333257 3334516 R murA murAp4 Sigma70 3334715 3334720 TTGTTT 17 3334692 3334697 TAAAAA 3334686 4.266 high homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgagTTGTTTgacggcatgagtcgggtTAAAAAacagcAgacgg 3334571 3334825 R yrbA yrbAp4 Sigma70 3335033 3335038 GTGTAT 15 3335012 3335017 TATAAT 3335005 2.91 poor homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaaaGTGTATaccctggcgaaattgTATAATttgcctGctgat 3334571 3334825 R yrbA yrbAp8 Sigma70 3334885 3334890 TTTATG 17 3334862 3334867 TAAGAT 3334856 4.136 high homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcttaTTTATGccagcgcaactttgctcTAAGATgtttcGctggt 3334571 3334825 R yrbA yrbAp9 Sigma70 3335006 3335011 TTGCCT 18 3334982 3334987 TAAATT 3334976 5.058 high homology 1.86E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTGCCTgctgatgttctgcctcgtTAAATTttttcAggccg 3334985 3335278 R mlaB mlaBp2 Sigma70 3335420 3335425 TTACGA 21 3335393 3335398 TATGAT 3335388 3.073 poor homology 0.000220415 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcTTACGAcatgattgctgaaggcgtcagTATGATcaccAccaaa 3347103 3347831 R mtgA mtgAp4 Sigma70 3347884 3347889 TTGCAG 19 3347859 3347864 TAAGCT 3347853 3.9 good homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gaacaTTGCAGaagcggcgagcggcatTGaTAAGCTggtttCccgcg 3351143 3352072 R yhcC yhcCp2 Sigma70 3352198 3352203 ATGAAA 20 3352172 3352177 TATGCA 3352167 2.144 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcATGAAAtttcggtaattttgattgatTATGCAgttgAtaaaa 3351143 3352072 R yhcC yhcCp5 Sigma70 3352142 3352147 TTGATC 21 3352115 3352120 TAAAAA 3352109 3.443 good homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgaTTGATCcaggtcatcgccgaattgagcTAAAAAtggcaGgcttt 3351143 3352072 R yhcC yhcCp6 Sigma70 3352268 3352273 TTGCCT 16 3352246 3352251 TAAAAA 3352240 4.063 high homology 4.32E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTGCCTaaaatccatcaggagaTAAAAAaatctGacaca 3351143 3352072 R yhcC yhcCp7 Sigma70 3352198 3352203 ATGAAA 17 3352175 3352180 GATTAT 3352168 4.096 high homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcATGAAAtttcggtaattttgattGATTATgcagttGataaa 3351143 3352072 R yhcC yhcCp8 Sigma70 3352284 3352289 TTTCAT 15 3352263 3352268 TAAAAT 3352257 4.7 high homology 2.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacgTTTCATgctactgtttttgccTAAAATccatcAggaga 3360134 3360808 F yhcA yhcAp2 Sigma70 3359994 3359999 TTAACC 20 3360020 3360025 GATTAT 3360031 2.104 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcaTTAACCagttagctataactcggacaGATTATgccctAtgaca 3360134 3360808 F yhcA yhcAp3 Sigma70 3360046 3360051 TTAATC 21 3360073 3360078 TAACAT 3360084 2.663 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgtcTTAATCaatctcatcgcaaacagtgcaTAACATatattAacaat 3360134 3360808 F yhcA yhcAp4 Sigma70 3359957 3359962 TTATAA 19 3359982 3359987 TATTTT 3359993 2.93 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtatTTATAAgaacttgtaatacagttttTATTTTtacgcAttaac 3360134 3360808 F yhcA yhcAp6 Sigma70 3359910 3359915 ATGAAA 16 3359932 3359937 TAACGT 3359942 2.963 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttctgATGAAAcgatcaaactggaTGgTAACGTcactAtcagc 3360134 3360808 F yhcA yhcAp7 Sigma70 3359949 3359954 TTCAGT 18 3359973 3359978 TACAGT 3359983 3.068 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcgTTCAGTatttataagaacttgtaaTACAGTttttAttttt 3360134 3360808 F yhcA yhcAp9 Sigma70 3360082 3360087 TTAACA 18 3360106 3360111 TATCAT 3360116 4.458 high homology 6.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atataTTAACAatatgtttctgcgttattTATCATtattAcagga 3363724 3364740 R insH insHp2 Sigma70 3364824 3364829 TTACCA 18 3364800 3364805 TAAACA 3364793 3.348 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcaaTTACCActtcttgaccattttgcaTAAACAccagccAattat 3364948 3365664 F yhcF yhcFp2 Sigma70 3364884 3364889 ATGAAG 20 3364910 3364915 GATATT 3364920 1.784 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaggATGAAGgggaactaaccgacatgacaGATATTacagGcaatc 3364948 3365664 F yhcF yhcFp4 Sigma70 3364830 3364835 TTGATA 19 3364855 3364860 CACACT 3364865 3.13 poor homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaTTGATAgcggtaaaagcgttagcctCACACTgacaAtggct 3365849 3366976 F yhcG yhcGp1 Sigma70 3365773 3365778 TTAATT 19 3365798 3365803 GAGTAT 3365809 1.94 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttcTTAATTgttcagtgctcaccccccaGAGTATagctcAttcca 3365849 3366976 F yhcG yhcGp2 Sigma70 3365714 3365719 TTAATG 20 3365740 3365745 TATCTT 3365751 1.974 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcggTTAATGtttcaggaaagctcttcgcaTATCTTggggaAagtaa 3365849 3366976 F yhcG yhcGp5 Sigma70 3365659 3365664 TTGTGA 19 3365684 3365689 TACTAT 3365695 3.13 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctacTTGTGAtaacaatgccggacaggagTACTATcaggcAttcgt 3365849 3366976 F yhcG yhcGp6 Sigma70 3365627 3365632 TTGATG 18 3365651 3365656 TAGTCT 3365661 3.968 good homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgaacTTGATGggaaagctgtgataagcgTAGTCTacttGtgata 3365849 3366976 F yhcG yhcGp7 Sigma70 3365810 3365815 TTCCAT 17 3365833 3365838 TATAAA 3365844 4.256 high homology 0.000220415 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctcaTTCCATtattcaacttagctccaTATAAAgggacAgataa 3367036 3367500 R yhcH yhcHp1 Sigma70 3367571 3367576 TTGATT 20 3367545 3367550 CATGAT 3367540 2.714 poor homology 0.000102055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatgTTGATTtactggcggcgcattaccgcCATGATgcagGtttac 3371720 3372511 R nanR nanRp1 Sigma70 3372728 3372733 TTTGTA 15 3372707 3372712 TATTCA 3372702 2.25 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTTGTAagaacacattcataaTATTCAtaatGctcgt 3371720 3372511 R nanR nanRp2 Sigma70 3372705 3372710 TTCATA 19 3372680 3372685 TAAATA 3372674 2.29 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTCATAatgctcgtgaatagtcttaTAAATAattcaAacggg 3371720 3372511 R nanR nanRp4 Sigma70 3372560 3372565 TTCAAT 19 3372535 3372540 GATGAT 3372530 2.83 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctactTTCAATcctgtgataggatgtcactGATGATgttaAtcaca 3371720 3372511 R nanR nanRp5 Sigma70 3372636 3372641 TTCGCA 21 3372609 3372614 TATGGT 3372604 2.943 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttTTCGCAatagttaattattccgttaatTATGGTaatgAtgagg 3371720 3372511 R nanR nanRp7 Sigma70 3372570 3372575 TTCCCC 17 3372547 3372552 TAGGAT 3372540 3.096 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccattTTCCCCtactttcaatcctgTGaTAGGATgtcactGatgat 3371720 3372511 R nanR nanRp8 Sigma70 3372673 3372678 TTCAAA 20 3372647 3372652 TACATT 3372641 3.374 good homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTCAAAcgggatgtttttatctgcgtTACATTaatttTtcgca 3371720 3372511 R nanR nanRp9 Sigma70 3372753 3372758 TTAAAA 16 3372731 3372736 TATTTT 3372725 3.863 good homology 7.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTAAAAaatatgcgcttatgatTATTTTgtaagAacaca 3371720 3372511 R nanR nanRp10 Sigma70 3372727 3372732 TTGTAA 18 3372703 3372708 CATAAT 3372698 3.878 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTGTAAgaacacattcataatattCATAATgctcGtgaat 3371720 3372511 R nanR nanRp12 Sigma70 3372705 3372710 TTCATA 17 3372682 3372687 TATAAA 3372675 4.436 high homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTCATAatgctcgtgaatagtctTATAAAtaattcAaacgg 3375837 3376229 R rpsI rpsIp2 Sigma70 3376344 3376349 TTGCCA 20 3376318 3376323 TATGTT 3376312 4.014 high homology 2.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcatgTTGCCAaaaggcccgctgggtcgTGcTATGTTccgtaAactga 3376892 3378019 R yhcM yhcMp3 Sigma70 3378172 3378177 TTGGCT 21 3378145 3378150 GATTAT 3378138 3.513 good homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtgTTGGCTtcaggctccatgcctgcggctGATTATgccactAtaacc 3383560 3383823 F yhcN yhcNp1 Sigma70 3383314 3383319 ATGAAT 19 3383339 3383344 CATTAT 3383350 2.09 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacaATGAATacataaggtaaaaaaagcaCATTATgcaaaAttcat 3383560 3383823 F yhcN yhcNp2 Sigma70 3383417 3383422 TTAAAA 20 3383443 3383448 TATCAA 3383454 2.444 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaTTAAAAttcacatttttaacacttagTATCAActgaaAcagtt 3383560 3383823 F yhcN yhcNp5 Sigma70 3383397 3383402 TTTTTA 15 3383418 3383423 TAAAAT 3383428 4.01 good homology 5.55E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtaTTTTTAattcttttttgttatTAAAATtcacAttttt 3383560 3383823 F yhcN yhcNp6 Sigma70 3383469 3383474 TTAATT 16 3383491 3383496 TATACT 3383503 4.493 high homology 1.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtaTTAATTagctcaataattagtgTATACTtgatttTgtgat 3383560 3383823 F yhcN yhcNp7 Sigma70 3383417 3383422 TTAAAA 17 3383440 3383445 TAGTAT 3383451 4.736 high homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaTTAAAAttcacatttttaacactTAGTATcaactGaaaca 3384243 3386210 R aaeB aaeBp1 Sigma70 3386322 3386327 CTGGCC 15 3386301 3386306 TACAGT 3386296 1.85 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aacatCTGGCCtgcgggcaccacTGcTACAGTggtgGtcact 3384243 3386210 R aaeB aaeBp2 Sigma70 3386425 3386430 GTGACG 18 3386401 3386406 TAGACT 3386396 2.228 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgcGTGACGacaaagggatggcgactaTAGACTctaaCcttga 3387542 3388471 F aaeR aaeRp1 Sigma70 3387451 3387456 TTGCTG 20 3387477 3387482 TAGCGT 3387487 2.104 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaTTGCTGtagattgatatttaatatatTAGCGTaactGttatg 3387542 3388471 F aaeR aaeRp3 Sigma70 3387476 3387481 TTAGCG 19 3387501 3387506 TATATT 3387512 2.75 poor homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atataTTAGCGtaactgttatgctgttatcTATATTatgtgAtctaa 3387542 3388471 F aaeR aaeRp5 Sigma70 3387476 3387481 TTAGCG 21 3387503 3387508 TATTAT 3387513 3.073 poor homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atataTTAGCGtaactgttatgctgttatctaTATTATgtgaTctaaa 3387542 3388471 F aaeR aaeRp6 Sigma70 3387467 3387472 TTTAAT 16 3387489 3387494 TATGCT 3387499 4.093 high homology 5.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgataTTTAATatattagcgtaacTGtTATGCTgttaTctata 3387542 3388471 F aaeR aaeRp7 Sigma70 3387451 3387456 TTGCTG 15 3387472 3387477 TATATT 3387483 4.34 high homology 4.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaTTGCTGtagattgatatttaaTATATTagcgtAactgt 3387542 3388471 F aaeR aaeRp9 Sigma70 3387371 3387376 TTGTAA 18 3387395 3387400 TATTTT 3387405 4.498 high homology 4.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttggTTGTAAagagagagcaggcgttatTATTTTcagcAtctgt 3387542 3388471 F aaeR aaeRp10 Sigma70 3387371 3387376 TTGTAA 15 3387392 3387397 TATTAT 3387403 5.06 high homology 1.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttggTTGTAAagagagagcaggcgtTATTATtttcaGcatct 3388605 3390050 R tldD tldDp1 Sigma70 3390109 3390114 TTCACG 16 3390087 3390092 TAAAAA 3390080 2.613 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggcgTTCACGccgcatccggcagccgTAAAAAatcctcTactgc 3390480 3394280 R yhdP yhdPp1 Sigma70 3394426 3394431 GTGGAA 20 3394400 3394405 TAAAGT 3394395 1.874 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggaaGTGGAAattttcgttggcaaacaggtTAAAGTacaaAttgaa 3390480 3394280 R yhdP yhdPp3 Sigma70 3394511 3394516 TTACGA 19 3394486 3394491 TATGCT 3394480 2.78 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgcTTACGActccgaccgtttcctggtcTATGCTtctccGgcagt 3390480 3394280 R yhdP yhdPp6 Sigma70 3394362 3394367 TTGACG 17 3394339 3394344 GATGCT 3394333 4.236 high homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcagtTTGACGtcgtaatgatgtaaacaGATGCTgggccGccatc 3396409 3396897 R mreD mreDp1 Sigma70 3397095 3397100 TTGCCT 19 3397070 3397075 CAAAGT 3397064 2.87 poor homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtaTTGCCTtcgccagacgcgatggggcCAAAGTtacctGaaccg 3396409 3396897 R mreD mreDp2 Sigma70 3397133 3397138 TTGCTA 16 3397111 3397116 GATGAT 3397105 3.683 good homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtgTTGCTAatgaacgtctgatgcaGATGATgccgcAggtat 3399414 3401354 R csrD csrDp2 Sigma70 3401410 3401415 TTGCGA 16 3401388 3401393 TAGTAT 3401383 3.493 good homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ataaaTTGCGAgataaatctgattTGcTAGTATgcccGcttcc 3399414 3401354 R csrD csrDp4 Sigma70 3401475 3401480 TTGGAA 16 3401453 3401458 TATACT 3401447 5.343 high homology 2.93E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggaTTGGAAaataatttctgaagacTATACTcgctaAtggaa 3401506 3402480 F yhdH yhdHp2 Sigma70 3401260 3401265 TTGTAG 20 3401286 3401291 CAAAGT 3401297 1.564 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgTTGTAGaaacttagcgaacagcccagCAAAGTcacaaAaattg 3401506 3402480 F yhdH yhdHp3 Sigma70 3401441 3401446 TTTCCA 19 3401466 3401471 GAAATT 3401478 2.57 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTTCCAttagcgagtatagtcttcaGAAATTattttcCaatcc 3401506 3402480 F yhdH yhdHp4 Sigma70 3401362 3401367 TTAACT 19 3401387 3401392 CATACT 3401398 2.69 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtgTTAACTccgatagtgaggaagcgggCATACTagcaaAtcaga 3401506 3402480 F yhdH yhdHp6 Sigma70 3401436 3401441 TTGCTT 15 3401457 3401462 TAGTCT 3401468 4 good homology 6.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggctTTGCTTttccattagcgagtaTAGTCTtcagaAattat 3410643 3410822 F yhdU yhdUp2 Sigma70 3410577 3410582 TTTTCA 16 3410599 3410604 TATATT 3410609 3.563 good homology 0.000115067 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggTTTTCAgattattcatttcgtgTATATTtcctGccaga 3410825 3411487 R envR envRp1 Sigma70 3411564 3411569 ATAAAT 18 3411540 3411545 TAACCT 3411534 2.408 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgtATAAATacacattaggtgatagatTAACCTtcgctAttttc 3410825 3411487 R envR envRp2 Sigma70 3411672 3411677 TTAAAA 19 3411647 3411652 TATTGA 3411642 2.65 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTAAAAcctcgtaaattgaaatataTATTGAtgtaGtgaat 3410825 3411487 R envR envRp4 Sigma70 3411637 3411642 GTGAAT 19 3411612 3411617 TATATT 3411607 2.76 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtaGTGAATgtatcttaggtaaataataTATATTatttAtttaa 3410825 3411487 R envR envRp8 Sigma70 3411672 3411677 TTAAAA 15 3411651 3411656 TATATA 3411645 3.2 good homology 0.000211772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTAAAAcctcgtaaattgaaaTATATAttgatGtagtg 3410825 3411487 R envR envRp9 Sigma70 3411657 3411662 TTGAAA 16 3411635 3411640 GAATGT 3411629 3.703 good homology 9.64E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaTTGAAAtatatattgatgtagtGAATGTatcttAggtaa 3410825 3411487 R envR envRp12 Sigma70 3411657 3411662 TTGAAA 21 3411630 3411635 TATCTT 3411624 4.503 high homology 4.69E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaTTGAAAtatatattgatgtagtgaatgTATCTTaggtaAataat 3410825 3411487 R envR envRp14 Sigma70 3411687 3411692 TTGAAA 20 3411661 3411666 TAAATT 3411655 4.924 high homology 1.74E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgggTTGAAAgaggcagaattaaaacctcgTAAATTgaaatAtatat 3410825 3411487 R envR envRp15 Sigma70 3411672 3411677 TTAAAA 17 3411649 3411654 TATATT 3411643 5.426 high homology 2.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTAAAAcctcgtaaattgaaataTATATTgatgtAgtgaa 3416412 3416633 F yhdV yhdVp2 Sigma70 3416313 3416318 TTCCGC 21 3416340 3416345 TAAAAT 3416350 2.603 poor homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence attcaTTCCGCaagatttataacctccggTGaTAAAATggcaTtcagc 3416412 3416633 F yhdV yhdVp4 Sigma70 3416283 3416288 TTTACA 15 3416304 3416309 CATTAT 3416316 2.87 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctattTTTACAattcacataattTGtCATTATtcattcCgcaag 3416412 3416633 F yhdV yhdVp5 Sigma70 3416274 3416279 TTCACT 16 3416296 3416301 TAATTT 3416308 3.203 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcccTTCACTatttttacaattcacaTAATTTgtcattAttcat 3416412 3416633 F yhdV yhdVp6 Sigma70 3416254 3416259 TTTCTA 19 3416279 3416284 TATTTT 3416289 3.3 good homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcTTTCTAtagttcccgctcccttcacTATTTTtacaAttcac 3416412 3416633 F yhdV yhdVp8 Sigma70 3416283 3416288 TTTACA 18 3416307 3416312 TATTCA 3416317 3.468 good homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctattTTTACAattcacataatttgtcatTATTCAttccGcaaga 3421445 3421564 R rrfF rrfFp1 Sigma70 3421641 3421646 TTGGTA 19 3421616 3421621 GACTCT 3421611 2.55 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacccTTGGTAagggtgaggtccccagttcGACTCTgggtAtcagc 3427788 3428045 R yrdB yrdBp2 Sigma70 3428229 3428234 TTGCTA 20 3428203 3428208 GAAAAA 3428197 2.504 poor homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTGCTAtgacatgttctatcagaaagGAAAAActcctTttctg 3433229 3434518 F rsmB rsmBp1 Sigma70 3433059 3433064 TTGCGA 16 3433081 3433086 GAACCT 3433093 2.193 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaggTTGCGActggtgatggcatcctGAACCTgctctcGttaca 3433229 3434518 F rsmB rsmBp3 Sigma70 3433158 3433163 TTGTTC 18 3433182 3433187 GATAGT 3433193 2.838 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggtTTGTTCcgggcaaccgtctggtctGATAGTccactCttcta 3436453 3436671 R yhdL yhdLp1 Sigma70 3436806 3436811 TTGTGG 19 3436781 3436786 TATTGT 3436776 2.46 poor homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctgTTGTGGgactgctcatagcagtgttTATTGTtcgaTtcttg 3436453 3436671 R yhdL yhdLp3 Sigma70 3436725 3436730 TTGATT 17 3436702 3436707 TACACT 3436695 5.966 high homology 1.22E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttgTTGATTttttgcactggcaggatTACACTcgcgccGttaaa 3436727 3437152 R zntR zntRp1 Sigma70 3437223 3437228 TTGAGT 18 3437199 3437204 GATTAT 3437194 3.678 good homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggaTTGAGTaccgattttttacgcggcGATTATgctgAcaagt 3436727 3437152 R zntR zntRp2 Sigma70 3437223 3437228 TTGAGT 21 3437196 3437201 TATGCT 3437190 4.073 high homology 6.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggaTTGAGTaccgattttttacgcggcgatTATGCTgacaaGttgtt 3437638 3438021 R rplQ rplQp1 Sigma70 3438067 3438072 CTGACG 18 3438043 3438048 TAAGGT 3438036 2.548 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcgCTGACGagtaaccggatcacaggtTAAGGTtttactGagaag 3437638 3438021 R rplQ rplQp2 Sigma70 3438163 3438168 TTGGTA 19 3438138 3438143 TAAAGA 3438131 2.95 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaccTTGGTAaaaaatctcttactgagatTAAAGAcgtgctGgcttc 3440640 3440756 R rpmJ rpmJp1 Sigma70 3440998 3441003 CTGACC 15 3440977 3440982 TATATT 3440970 3.02 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccgcCTGACCctggttggtgcgctgTATATTacctttAtctgc 3440640 3440756 R rpmJ rpmJp2 Sigma70 3440869 3440874 TTTATG 17 3440846 3440851 GATGAT 3440840 3.206 good homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggacTTTATGgctcaagtgcaaactctGATGATgtccaGtcagt 3446336 3446590 R rpsQ rpsQp1 Sigma70 3446745 3446750 TTGAAG 19 3446720 3446725 GAACCT 3446714 2.72 poor homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcgTTGAAGagctgaacaccgagctgctGAACCTgctgcGtgagc 3464271 3464747 R bfr bfrp1 Sigma70 3464947 3464952 TTTCCC 18 3464923 3464928 TAAAAA 3464917 2.728 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagtTTTCCCctcactcgttccagcaatTAAAAAaatttAttccg 3464271 3464747 R bfr bfrp3 Sigma70 3464799 3464804 TTGACT 16 3464777 3464782 TACTCT 3464771 4.623 high homology 1.53E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGACTtactcgtaagccgttcTACTCTtcaaaGagtgg 3472700 3472987 R yheL yheLp1 Sigma70 3473039 3473044 ATGCCT 20 3473013 3473018 TACGAT 3473008 2.504 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcagATGCCTtacgccgcgaactcgccaacTACGATgttaTtttga 3472700 3472987 R yheL yheLp4 Sigma70 3473157 3473162 TTTAAA 15 3473136 3473141 GACATT 3473130 2.82 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccactTTTAAAttgttgggtctgtacGACATTgaacaGtgctg 3475662 3475880 F slyX slyXp1 Sigma70 3475521 3475526 CTACAT 15 3475542 3475547 TATCAT 3475553 2.16 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatCTACATacagacacgccctatTATCATctattTtcaga 3475662 3475880 F slyX slyXp2 Sigma70 3475551 3475556 TTTTCA 18 3475575 3475580 TAGTTT 3475586 2.478 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctaTTTTCAgactctttttgtttaaatTAGTTTcgatgAccgcg 3475662 3475880 F slyX slyXp5 Sigma70 3475477 3475482 TTAACT 16 3475499 3475504 TATAAA 3475510 3.533 good homology 0.000156885 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggTTAACTattatcagaagggtacTATAAAgcgttGtcgaa 3475662 3475880 F slyX slyXp6 Sigma70 3475601 3475606 CTGTCT 17 3475624 3475629 TAGAAT 3475635 3.576 good homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtgCTGTCTcgggcagcaaagttaagTAGAATccgcgGcgacc 3475929 3476519 R slyD slyDp1 Sigma70 3476561 3476566 TTCCGC 15 3476540 3476545 TATTCT 3476535 2.27 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagaaTTCCGCtacaatctgcgccacTATTCTtcccAtgctc 3475929 3476519 R slyD slyDp2 Sigma70 3476750 3476755 TTCAAT 21 3476723 3476728 TATTGA 3476718 2.463 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggaTTCAATggcgatgtggcgcgaaaataaTATTGAtattGttgaa 3475929 3476519 R slyD slyDp6 Sigma70 3476750 3476755 TTCAAT 18 3476726 3476731 TAATAT 3476721 4.478 high homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggaTTCAATggcgatgtggcgcgaaaaTAATATtgatAttgtt 3479311 3481224 F yheS yheSp1 Sigma70 3479262 3479267 TTACAT 19 3479287 3479292 CATAGT 3479297 2.14 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacaTTACATtatcataatgataagttaaCATAGTctgaAcatac 3479311 3481224 F yheS yheSp2 Sigma70 3479232 3479237 TTGCGC 20 3479258 3479263 TACATT 3479269 2.294 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taccaTTGCGCccggtgcggcagctcgcccaTACATTacattAtcata 3479311 3481224 F yheS yheSp4 Sigma70 3479203 3479208 TTGTGT 18 3479227 3479232 TACCAT 3479237 2.878 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtttTTGTGTatagtcgctgttttgggcTACCATtgcgCccggt 3479311 3481224 F yheS yheSp5 Sigma70 3479172 3479177 CTGAGA 17 3479195 3479200 TATGGT 3479205 3.226 good homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctggCTGAGAcatcatccccctcccggTATGGTttttGtgtat 3479311 3481224 F yheS yheSp6 Sigma70 3479262 3479267 TTACAT 16 3479284 3479289 TAACAT 3479295 3.373 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacaTTACATtatcataatgataagtTAACATagtctGaacat 3497470 3497637 F yhfL yhfLp1 Sigma70 3497399 3497404 TTAACG 21 3497426 3497431 TAATCA 3497436 1.953 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttcTTAACGagcagtctgcttatattcataTAATCAatgaAtatta 3497470 3497637 F yhfL yhfLp2 Sigma70 3497415 3497420 TTATAT 16 3497437 3497442 TATTAA 3497448 2.203 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgcTTATATtcatataatcaatgaaTATTAAttaatAtataa 3497470 3497637 F yhfL yhfLp4 Sigma70 3497428 3497433 ATCAAT 15 3497449 3497454 TATAAT 3497460 3.65 good homology 3.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atataATCAATgaatattaattaataTATAATacataGggaat 3497470 3497637 F yhfL yhfLp5 Sigma70 3497297 3497302 TTAATA 20 3497323 3497328 TATATT 3497333 3.794 good homology 5.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccccTTAATAaatattatctgctaatgggtTATATTcaccGttaca 3497470 3497637 F yhfL yhfLp6 Sigma70 3497282 3497287 ATAAAA 17 3497305 3497310 TATTAT 3497316 4.206 high homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaATAAAAcatagccccttaataaaTATTATctgctAatggg 3497470 3497637 F yhfL yhfLp7 Sigma70 3497399 3497404 TTAACG 19 3497424 3497429 TATAAT 3497435 4.3 high homology 1.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttcTTAACGagcagtctgcttatattcaTATAATcaatgAatatt 3497470 3497637 F yhfL yhfLp8 Sigma70 3497420 3497425 TTCATA 18 3497444 3497449 TAATAT 3497455 4.368 high homology 7.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTCATAtaatcaatgaatattaatTAATATataatAcatag 3497932 3499269 F frlA frlAp1 Sigma70 3497826 3497831 TTACAT 21 3497853 3497858 CATCAT 3497864 1.723 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacaTTACATaacatcatatgttgttatattCATCATgcattGtcatg 3497932 3499269 F frlA frlAp3 Sigma70 3497862 3497867 TTGTCA 20 3497888 3497893 CAAACT 3497900 2.584 poor homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcaTTGTCAtgttaccttttaaatgactgCAAACTctccccTacaac 3497932 3499269 F frlA frlAp8 Sigma70 3497709 3497714 TTTCTA 21 3497736 3497741 TAAAAA 3497748 3.063 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttgTTTCTAtgtccttcttgcccccgcccgTAAAAAtattttCacttt 3497932 3499269 F frlA frlAp11 Sigma70 3497826 3497831 TTACAT 17 3497849 3497854 TATTCA 3497859 3.576 good homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacaTTACATaacatcatatgttgttaTATTCAtcatGcattg 3497932 3499269 F frlA frlAp12 Sigma70 3497808 3497813 TTGTGA 17 3497831 3497836 TAACAT 3497842 4.046 high homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaattTTGTGAtcttcctccacattacaTAACATcatatGttgtt 3497932 3499269 F frlA frlAp13 Sigma70 3497826 3497831 TTACAT 15 3497847 3497852 TATATT 3497857 4.1 high homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccacaTTACATaacatcatatgtTGtTATATTcatcAtgcat 3502957 3504042 R yhfS yhfSp1 Sigma70 3504215 3504220 TTAAGA 15 3504194 3504199 GATTCT 3504188 2.34 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaTTAAGAtggcgggttataccgGATTCTctatcGcggtt 3502957 3504042 R yhfS yhfSp2 Sigma70 3504284 3504289 ATAACA 16 3504262 3504267 TATGCT 3504256 2.653 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcggATAACAtccgtaacgccatgaaTATGCTgatggAagtgg 3509082 3509444 R yhfY yhfYp2 Sigma70 3509548 3509553 ATGCAA 21 3509521 3509526 GATAAA 3509516 2.003 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acccaATGCAAcaactgctgcgtgccgttgtaGATAAAcacgCcctgc 3523611 3524171 R nudE nudEp2 Sigma70 3524289 3524294 TTAATT 15 3524268 3524273 TATTTA 3524263 2.14 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacttTTAATTtgatttgaggacgatTATTTAttaaGttaca 3523611 3524171 R nudE nudEp3 Sigma70 3524309 3524314 TTATTT 15 3524288 3524293 TAATTT 3524282 2.36 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggagTTATTTcaacctattgactttTAATTTgatttGaggac 3523611 3524171 R nudE nudEp4 Sigma70 3524290 3524295 TTTAAT 20 3524264 3524269 TATTAA 3524258 2.854 poor homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgactTTTAATttgatttgaggacgattattTATTAAgttacAtaaat 3523611 3524171 R nudE nudEp5 Sigma70 3524226 3524231 TTGCCG 18 3524202 3524207 CACAAT 3524197 2.958 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaTTGCCGaaagcgtgtccgatatcgCACAATaaccGctgat 3523611 3524171 R nudE nudEp6 Sigma70 3524296 3524301 TTGACT 16 3524274 3524279 GACGAT 3524268 3.343 good homology 5.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctaTTGACTtttaatttgatttgagGACGATtatttAttaag 3523611 3524171 R nudE nudEp7 Sigma70 3524266 3524271 TTTATT 18 3524242 3524247 TAACAT 3524237 3.848 good homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTTATTaagttacataaatgtaaaTAACATgcaaTtcaca 3523611 3524171 R nudE nudEp8 Sigma70 3524296 3524301 TTGACT 19 3524271 3524276 GATTAT 3524265 4.19 high homology 2.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctaTTGACTtttaatttgatttgaggacGATTATttattAagtta 3524491 3526626 F yrfF yrfFp1 Sigma70 3524372 3524377 GTGATG 19 3524397 3524402 TAAACT 3524407 2.18 poor homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttactGTGATGtgcttaatgatgctcaagtTAAACTccacGcttgc 3524491 3526626 F yrfF yrfFp2 Sigma70 3524334 3524339 TTCCGC 15 3524355 3524360 TATGAT 3524366 2.21 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgataTTCCGCcttcagagggttTGcTATGATcagcgGttact 3524491 3526626 F yrfF yrfFp7 Sigma70 3524453 3524458 CTGACC 17 3524476 3524481 TAAGAT 3524487 3.536 good homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgaCTGACCacgcctgacagactaagTAAGATggggaAagcat 3524491 3526626 F yrfF yrfFp10 Sigma70 3524409 3524414 TTGCCG 21 3524436 3524441 TATTGT 3524447 4.103 high homology 6.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgcTTGCCGatagccaaccgcagaatcatgTATTGTgtccgGtgcga 3524491 3526626 F yrfF yrfFp11 Sigma70 3524306 3524311 TTGAAA 18 3524330 3524335 GATATT 3524341 4.708 high homology 5.67E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataggTTGAAAtaactccaggaatttgctGATATTccgccTtcaga 3527796 3528674 F hslO hslOp2 Sigma70 3527616 3527621 TTGCTG 15 3527637 3527642 GAAAGT 3527648 3.06 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagccTTGCTGtatgaagagactgcgGAAAGTgtagaGaaacg 3528737 3530461 R yhgE yhgEp5 Sigma70 3530554 3530559 TTCACC 18 3530530 3530535 TATTTT 3530524 3.168 good homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgaTTCACCacgctaactttttttgatTATTTTctgaaAaaagc 3528737 3530461 R yhgE yhgEp6 Sigma70 3530642 3530647 TTAAAT 20 3530616 3530621 TATTGT 3530610 3.584 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaggTTAAATcttggtttatatggcgggaaTATTGTgagtgGaatcg 3528737 3530461 R yhgE yhgEp7 Sigma70 3530535 3530540 TTGATT 15 3530514 3530519 CAAAAT 3530507 3.72 good homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGATTattttctgaaaaaagCAAAATactactGcccgg 3528737 3530461 R yhgE yhgEp8 Sigma70 3530642 3530647 TTAAAT 17 3530619 3530624 GAATAT 3530613 3.946 good homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaggTTAAATcttggtttatatggcggGAATATtgtgaGtggaa 3528737 3530461 R yhgE yhgEp9 Sigma70 3530590 3530595 ATGAAA 19 3530565 3530570 TAAAGT 3530560 3.96 good homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgaATGAAAttgatgcaaattcaaccggTAAAGTatcgAttcac 3534834 3535310 F greB greBp1 Sigma70 3534694 3534699 TTTCAG 19 3534719 3534724 TATTAA 3534730 2.26 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaTTTCAGcctaaattgttacaaagcaTATTAAacagcAgctta 3534834 3535310 F greB greBp2 Sigma70 3534745 3534750 TTTATT 15 3534766 3534771 GATTCT 3534776 2.99 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTTATTcggcgaaacattattGATTCTgttgAtatga 3534834 3535310 F greB greBp3 Sigma70 3534764 3534769 TTGATT 18 3534788 3534793 TATACC 3534798 3.308 good homology 0.000113922 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTGATTctgttgatatgatcacgtTATACCcaatGtgcgc 3534834 3535310 F greB greBp4 Sigma70 3534625 3534630 TTCGCA 16 3534647 3534652 TATTCT 3534658 3.523 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaggTTCGCAacaatttgtaagcgtgTATTCTtaaaaAagctc 3535407 3537728 F yhgF yhgFp1 Sigma70 3535299 3535304 GTGAAA 16 3535321 3535326 TAACCT 3535333 2.263 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtacGTGAAAccgtaaggaagagtctTAACCTcctgccGatggc 3541189 3542067 F yhgA yhgAp1 Sigma70 3541038 3541043 TTTTTT 15 3541059 3541064 TAAAAA 3541069 2.42 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggcTTTTTTgcgtgcggctttccaTAAAAAtgcaActctt 3541189 3542067 F yhgA yhgAp2 Sigma70 3541064 3541069 ATGCAA 16 3541086 3541091 TAAGTT 3541097 2.683 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATGCAActcttgcagcacggcgTAAGTTcctttGaaagc 3542096 3542866 R bioH bioHp1 Sigma70 3543067 3543072 TTTGCA 15 3543046 3543051 GAAGAT 3543041 2.3 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggttTTTGCAggcagcgaccgcaggGAAGATgggaGtgtgt 3567369 3569342 R glgX glgXp2 Sigma70 3569552 3569557 TTTACG 15 3569531 3569536 GATTAT 3569524 2.86 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaacTTTACGccggtaccgcgtcatGATTATcgcttcGgcata 3571798 3572901 R asd asdp1 Sigma70 3573025 3573030 TTACTG 20 3572999 3573004 TAATTT 3572993 1.894 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaTTACTGatggcttcgctatcattgatTAATTTcacttGcgact 3571798 3572901 R asd asdp2 Sigma70 3572933 3572938 TTTATA 18 3572909 3572914 GAAAAA 3572904 2.498 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacaTTTATAcagcacacatctttgcagGAAAAAaacgCttatg 3571798 3572901 R asd asdp3 Sigma70 3572990 3572995 TTGCGA 16 3572968 3572973 TATGGT 3572962 3.603 good homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcacTTGCGActttggctgctttttgTATGGTgaaagAtgtgc 3571798 3572901 R asd asdp5 Sigma70 3573098 3573103 TTTCAT 18 3573074 3573079 GATAAT 3573069 3.998 good homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgaTTTCATtcataactcaaattccctGATAATtgccGcggac 3573094 3573687 F yhgN yhgNp1 Sigma70 3572911 3572916 TTTCCT 16 3572933 3572938 TATAAA 3572945 3.343 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTTCCTgcaaagatgtgtgctgTATAAAtgtgccGgtctc 3573744 3575084 R gntU gntUp1 Sigma70 3575250 3575255 CTGAAA 20 3575224 3575229 TAAAAC 3575219 1.344 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccgcCTGAAAgcgcgcaaaggccatttcttTAAAACccaaAtgttg 3577791 3578828 R yhhX yhhXp1 Sigma70 3578865 3578870 TTGCGC 20 3578839 3578844 TAAAAA 3578833 2.054 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgctTTGCGCtaaggtgtaaataaccacctTAAAAAggacgAaatca 3577791 3578828 R yhhX yhhXp3 Sigma70 3579071 3579076 TTGGAC 16 3579049 3579054 GATTAT 3579044 2.863 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtgTTGGACaagtgcgaatgagaatGATTATtattGtctcg 3577791 3578828 R yhhX yhhXp5 Sigma70 3579071 3579076 TTGGAC 19 3579046 3579051 TATTAT 3579039 4.02 high homology 5.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtgTTGGACaagtgcgaatgagaatgatTATTATtgtctcGcgatc 3579886 3581064 F yhhZ yhhZp1 Sigma70 3579755 3579760 ATTACT 18 3579779 3579784 TATTTT 3579790 2.618 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataATTACTtcctaaagtgtaatatttTATTTTttaatAtatac 3579886 3581064 F yhhZ yhhZp3 Sigma70 3579817 3579822 ATAAAT 15 3579838 3579843 TAATAT 3579848 2.88 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtaaATAAATaacaattaacaagcaTAATATtgccAttgat 3579886 3581064 F yhhZ yhhZp5 Sigma70 3579745 3579750 TTAACT 20 3579771 3579776 TAATAT 3579781 3.754 good homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagatTTAACTcataattacttcctaaagtgTAATATtttaTttttt 3579886 3581064 F yhhZ yhhZp6 Sigma70 3579776 3579781 TTTTAT 17 3579799 3579804 TACAAT 3579810 4.596 high homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTTTATtttttaatatatacgccTACAATttcctGgagta 3579886 3581064 F yhhZ yhhZp7 Sigma70 3579828 3579833 TTAACA 19 3579853 3579858 TAAAAT 3579864 4.77 high homology 1.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aacaaTTAACAagcataatattgccatTGaTAAAATagcatGccata 3582782 3583066 F yrhB yrhBp1 Sigma70 3582628 3582633 TTAGCA 19 3582653 3582658 TATCTT 3582664 2.45 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTAGCAgatacttatttcgtgactaTATCTTatccgAtgaac 3582782 3583066 F yrhB yrhBp4 Sigma70 3582674 3582679 TTCAAA 15 3582695 3582700 TATCTT 3582706 3.45 good homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTCAAAaccagcatttaataaTATCTTtgacgAagatg 3582782 3583066 F yrhB yrhBp5 Sigma70 3582597 3582602 TTCGAC 18 3582621 3582626 TAAAAT 3582631 3.558 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcccgTTCGACgttctgaaaaagaaatcaTAAAATattaGcagat 3582782 3583066 F yrhB yrhBp6 Sigma70 3582721 3582726 TTGCTC 17 3582744 3582749 TAATAA 3582754 3.576 good homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtctTTGCTCaatgtatcacacaggaaTAATAAtataAcactc 3582782 3583066 F yrhB yrhBp7 Sigma70 3582721 3582726 TTGCTC 20 3582747 3582752 TAATAT 3582757 3.634 good homology 7.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtctTTGCTCaatgtatcacacaggaataaTAATATaacaCtcaac 3583104 3584846 R ggt ggtp1 Sigma70 3584887 3584892 ATACCA 21 3584860 3584865 TAATCT 3584854 2.363 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttatATACCAggcttagctggggttgcccctTAATCTctggaGaataa 3583104 3584846 R ggt ggtp2 Sigma70 3584966 3584971 TTTCAT 15 3584945 3584950 GAAGAT 3584938 2.66 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtcgTTTCATcgcgtatcctcctctGAAGATatccttTaagtt 3583104 3584846 R ggt ggtp3 Sigma70 3584929 3584934 TTTACT 16 3584907 3584912 GATGAT 3584900 2.983 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaagTTTACTcgcttcccgacaaaacGATGATtaattcAgagtt 3583104 3584846 R ggt ggtp5 Sigma70 3584966 3584971 TTTCAT 20 3584940 3584945 TATCCT 3584935 3.244 good homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtcgTTTCATcgcgtatcctcctctgaagaTATCCTttaaGtttac 3584966 3585406 F yhhA yhhAp1 Sigma70 3584825 3584830 GTAAAA 19 3584850 3584855 TATTCT 3584861 1.88 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggcGTAAAAacgtcggttttatcatcgtTATTCTccagaGattaa 3584966 3585406 F yhhA yhhAp4 Sigma70 3584904 3584909 TTAATC 21 3584931 3584936 TAAACT 3584942 3.513 good homology 8.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTAATCatcgttttgtcgggaagcgagTAAACTtaaagGatatc 3585393 3586136 R ugpQ ugpQp2 Sigma70 3586373 3586378 ATGACT 15 3586352 3586357 GAACAT 3586346 2.18 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaATGACTctcggcattcgcccgGAACATattgcGctaag 3585393 3586136 R ugpQ ugpQp3 Sigma70 3586373 3586378 ATGACT 18 3586349 3586354 CATATT 3586343 2.218 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaATGACTctcggcattcgcccggaaCATATTgcgctAagctc 3585393 3586136 R ugpQ ugpQp4 Sigma70 3586360 3586365 TTCGCC 15 3586339 3586344 TAAGCT 3586333 2.22 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcaTTCGCCcggaacatattgcgcTAAGCTcgcagGcagaa 3590747 3591460 R livF livFp1 Sigma70 3591596 3591601 TTGAAC 21 3591569 3591574 GAATTT 3591562 2.573 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttgaTTGAACacgatatgaagctggtgaTGgGAATTTcggaccGaattt 3596007 3596390 F yhhK yhhKp2 Sigma70 3595867 3595872 TTTCAT 20 3595893 3595898 TAATTA 3595904 1.484 poor homology 0.000816895 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acattTTTCATtctctaatgttttaattttgTAATTAttgctGttaaa 3596007 3596390 F yhhK yhhKp3 Sigma70 3595913 3595918 TTAATC 15 3595934 3595939 TAAAAA 3595945 2.47 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTAATCacctgccaaaagaaaTAAAAAagagaAagcct 3596007 3596390 F yhhK yhhKp4 Sigma70 3595890 3595895 TTGTAA 18 3595914 3595919 TAATCA 3595926 3.408 good homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTGTAAttattgctgttaaaaaatTAATCAcctgccAaaaga 3596007 3596390 F yhhK yhhKp5 Sigma70 3595933 3595938 ATAAAA 17 3595956 3595961 TAAATT 3595967 3.686 good homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaATAAAAaagagaaagcctccgatTAAATTatttcGctaca 3596007 3596390 F yhhK yhhKp6 Sigma70 3595883 3595888 TTTAAT 17 3595906 3595911 TAAAAA 3595916 4.436 high homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aatgtTTTAATtttgtaattattgcTGtTAAAAAattaAtcacc 3599051 3600109 R ftsX ftsXp1 Sigma70 3600157 3600162 TTCCTA 19 3600132 3600137 GATGGT 3600126 1.88 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggcgTTCCTAtcgcatgctcaccctgagcGATGGTcacttGcatgg 3599051 3600109 R ftsX ftsXp2 Sigma70 3600219 3600224 TTTAAC 16 3600197 3600202 TATTGA 3600191 1.893 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagagTTTAACcgcgttggggtaaccgTATTGAtggcaAcgcac 3602416 3603012 F rsmD rsmDp3 Sigma70 3602288 3602293 TTGCTT 19 3602313 3602318 TATGTA 3602323 2.46 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTGCTTcatggcacagcgttaacgcTATGTAcataGcagct 3602416 3603012 F rsmD rsmDp5 Sigma70 3602306 3602311 TTAACG 16 3602328 3602333 TAAAAA 3602338 2.683 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcgTTAACGctatgtacatagcagcTAAAAAaatgAtgaaa 3602416 3603012 F rsmD rsmDp8 Sigma70 3602251 3602256 TTTTTT 17 3602274 3602279 TACACT 3602284 4.086 high homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgttTTTTTTctttcgccatttgcgacTACACTcctcGctgtt 3603274 3603633 R yhhM yhhMp4 Sigma70 3603688 3603693 ATGACA 18 3603664 3603669 TATGCT 3603657 4.158 high homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacggATGACAacaccataactggcagggTATGCTtatttcCgcatt 3603774 3604400 F yhhN yhhNp4 Sigma70 3603559 3603564 TTGCAT 21 3603586 3603591 GACAAT 3603598 3.993 good homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTGCATaaaacgaaacgatgcggcgacGACAATtaagccAatgat 3603774 3604400 F yhhN yhhNp5 Sigma70 3603626 3603631 TTGCTC 17 3603649 3603654 GAAAAT 3603660 4.296 high homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtTTGCTCatctttatccctcatcgGAAAATgcggaAataag 3603774 3604400 F yhhN yhhNp6 Sigma70 3603687 3603692 TTGTCA 18 3603711 3603716 TAAACT 3603721 5.258 high homology 8.63E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtgTTGTCAtccgtccaccctcgccacTAAACTggaaGcaaga 3606774 3607019 R sirA sirAp1 Sigma70 3607125 3607130 CTGCTT 20 3607099 3607104 TAATTT 3607094 1.894 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataCTGCTTtacgttgacaatgcaatggtTAATTTtcacGcaatc 3606774 3607019 R sirA sirAp2 Sigma70 3607154 3607159 TTACCC 19 3607129 3607134 GATACT 3607123 2.42 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgcTTACCCttttttcgagccgccgcatGATACTgctttAcgttg 3606774 3607019 R sirA sirAp3 Sigma70 3607258 3607263 TTGAGT 15 3607237 3607242 CATATT 3607231 2.47 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcgTTGAGTttgcgagaaaacgttCATATTgtaccTttttg 3606774 3607019 R sirA sirAp5 Sigma70 3607100 3607105 TTAATT 18 3607076 3607081 TAGTTT 3607071 2.828 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatggTTAATTttcacgcaatcgttaaccTAGTTTgcttAcggac 3606774 3607019 R sirA sirAp7 Sigma70 3607072 3607077 TTGCTT 16 3607050 3607055 TAAACT 3607043 5.013 high homology 6.33E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctagtTTGCTTacggactcacagggcgTAAACTagcgccGttttt 3607240 3607905 F yhhQ yhhQp1 Sigma70 3607144 3607149 CTCGAA 16 3607166 3607171 TATTAT 3607177 2.143 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcggCTCGAAaaaagggtaagcacgtTATTATgttaaGgtaac 3607240 3607905 F yhhQ yhhQp3 Sigma70 3607052 3607057 TTTACG 17 3607075 3607080 CAAACT 3607086 3.016 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctagTTTACGccctgtgagtccgtaagCAAACTaggttAacgat 3607240 3607905 F yhhQ yhhQp5 Sigma70 3607109 3607114 TTGCAT 16 3607131 3607136 TATCAT 3607142 4.773 high homology 1.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTGCATtgtcaacgtaaagcagTATCATgcggcGgctcg 3607978 3608535 F dcrB dcrBp3 Sigma70 3607765 3607770 ATGGAA 15 3607786 3607791 TACTGT 3607797 2.51 poor homology 0.000761668 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actggATGGAAatcgcgctggtcgatTACTGTttcaaAgtgtt 3607978 3608535 F dcrB dcrBp4 Sigma70 3607785 3607790 TTACTG 18 3607809 3607814 TATCGT 3607820 2.628 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgaTTACTGtttcaaagtgttaatcagTATCGTtttctTcctgc 3607978 3608535 F dcrB dcrBp5 Sigma70 3607936 3607941 ATGAAT 17 3607959 3607964 TATCGA 3607970 2.676 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatggATGAATgagccgttatggccgttTATCGAaaggaAgaagt 3607978 3608535 F dcrB dcrBp7 Sigma70 3607902 3607907 TTAAAG 20 3607928 3607933 TAAGAT 3607939 3.024 poor homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgagTTAAAGgttcgttatcagagttgTGaTAAGATggatgAatgag 3608539 3609756 R yhhS yhhSp2 Sigma70 3609812 3609817 CTGATT 17 3609789 3609794 TAAAAA 3609784 3.466 good homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tactgCTGATTttcacgtcagcacgTGgTAAAAAtgaaAcactg 3609888 3610937 F yhhT yhhTp2 Sigma70 3609784 3609789 TTTCAT 19 3609809 3609814 GAAAAT 3609820 3.25 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtgTTTCATttttaccacgtgctgacgtGAAAATcagcaGtaaga 3610992 3611579 F acpT acpTp2 Sigma70 3610825 3610830 TTTCGG 19 3610850 3610855 TAAAAT 3610860 2.85 poor homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctacTTTCGGtgccattaaccagcgtgtgTAAAATctggAtggaa 3610992 3611579 F acpT acpTp5 Sigma70 3610926 3610931 TTACCG 18 3610950 3610955 TACGAT 3610960 2.998 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtcggTTACCGggatgaggcgacaagTGaTACGATacgcActttc 3617215 3621450 F rhsB rhsBp5 Sigma70 3617157 3617162 TTTCTT 16 3617179 3617184 GATACT 3617191 3.083 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttTTTCTTcgctttttcgtatgaaGATACTgtcattAaaata 3617215 3621450 F rhsB rhsBp6 Sigma70 3617157 3617162 TTTCTT 18 3617181 3617186 TACTGT 3617192 3.148 good homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttTTTCTTcgctttttcgtatgaagaTACTGTcattaAaataa 3617215 3621450 F rhsB rhsBp7 Sigma70 3617095 3617100 TTCTCT 16 3617117 3617122 TATATT 3617128 3.183 good homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaccTTCTCTtttgtaacgttctaaaTATATTcctaaAaatct 3617215 3621450 F rhsB rhsBp8 Sigma70 3617168 3617173 TTTCGT 16 3617190 3617195 TAAAAT 3617201 3.473 good homology 8.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcttTTTCGTatgaagatactgtcatTAAAATaatagAaaagg 3617215 3621450 F rhsB rhsBp10 Sigma70 3617102 3617107 TTGTAA 17 3617125 3617130 TAAAAA 3617136 4.776 high homology 7.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcttTTGTAAcgttctaaatatattccTAAAAAtcttcAattca 3617215 3621450 F rhsB rhsBp11 Sigma70 3616995 3617000 TTGCCG 15 3617016 3617021 TATTAT 3617026 4.79 high homology 2.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgcTTGCCGaaggaagattgagtcTATTATtgggTccttt 3621422 3621805 F yhhH yhhHp1 Sigma70 3621273 3621278 TTGGGA 15 3621294 3621299 TAAAGA 3621305 2.43 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaataTTGGGAcgaaatattttcaggTAAAGAtgagaAaatag 3621422 3621805 F yhhH yhhHp2 Sigma70 3621341 3621346 TTTATT 16 3621363 3621368 TAATTT 3621373 3.163 good homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtcatTTTATTtaggtacgcccagTGgTAATTTtaaaGcaata 3621422 3621805 F yhhH yhhHp3 Sigma70 3621215 3621220 ATGGTA 17 3621238 3621243 TATCAT 3621248 3.736 good homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccctaATGGTActgagaaagtatcagctTATCATactcAtggtg 3622401 3623537 F yhhI yhhIp1 Sigma70 3622152 3622157 ATAAAT 18 3622176 3622181 TAATGT 3622187 2.558 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaatATAAATttgcaaaaaatgcgaagaTAATGTttttaAtattt 3622401 3623537 F yhhI yhhIp3 Sigma70 3622319 3622324 TTGAGA 15 3622340 3622345 GAAGCT 3622352 2.9 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTGAGAtattccttattacctGAAGCTgtttttTattgc 3622401 3623537 F yhhI yhhIp4 Sigma70 3622334 3622339 TTACCT 19 3622359 3622364 TATACA 3622370 2.98 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTACCTgaagctgttttttattgctTATACAtgatcAaatac 3622401 3623537 F yhhI yhhIp5 Sigma70 3622285 3622290 TTGCAC 16 3622307 3622312 TATGTT 3622318 3.503 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTGCACtaaataattcgcatttTATGTTtaaaaAttgag 3622401 3623537 F yhhI yhhIp6 Sigma70 3622158 3622163 TTGCAA 21 3622185 3622190 TAATAT 3622196 5.213 high homology 5.13E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaatTTGCAAaaaatgcgaagataatgttttTAATATtttgaAcaata 3623702 3624826 R yhhJ yhhJp1 Sigma70 3625054 3625059 TTGATC 20 3625028 3625033 GATGAT 3625021 2.734 poor homology 0.000243596 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacgTTGATCccggcgacacagttttccggGATGATcgatccGgtagc 3628991 3630613 R yhiJ yhiJp1 Sigma70 3630843 3630848 TTTTAA 16 3630821 3630826 TAGGTT 3630815 1.913 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtctTTTTAAtcctgccagtatttcaTAGGTTttcttAatcga 3628991 3630613 R yhiJ yhiJp2 Sigma70 3630755 3630760 CTGCTA 20 3630729 3630734 TATGCT 3630723 2.714 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttctCTGCTAtgagataagaaatttcatatTATGCTttgagGctgaa 3628991 3630613 R yhiJ yhiJp3 Sigma70 3630713 3630718 ATGATT 15 3630692 3630697 TATTTT 3630685 3.17 good homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaATGATTtgtgcaaaatataatTATTTTcccatcGaacat 3628991 3630613 R yhiJ yhiJp5 Sigma70 3630688 3630693 TTCCCA 21 3630661 3630666 TAAGAT 3630655 3.673 good homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTCCCAtcgaacatgaggtgtatgtcaTAAGATaaaatGttaac 3628991 3630613 R yhiJ yhiJp6 Sigma70 3630649 3630654 TTAACT 19 3630624 3630629 TAATAT 3630618 4.01 good homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatgTTAACTatgtattcctcgcggtaaaTAATATgaggtAaaata 3628991 3630613 R yhiJ yhiJp7 Sigma70 3630755 3630760 CTGCTA 17 3630732 3630737 TATTAT 3630726 4.496 high homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttctCTGCTAtgagataagaaatttcaTATTATgctttGaggct 3632864 3633916 F yhiM yhiMp1 Sigma70 3632799 3632804 TTAACA 20 3632825 3632830 CATATT 3632836 2.044 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTAACAggatgaaattatcattaatgCATATTtcaatAttagc 3632864 3633916 F yhiM yhiMp2 Sigma70 3632676 3632681 ATTAAT 19 3632701 3632706 TATCAT 3632712 2.54 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaATTAATcttaggataaatttttattTATCATggcctTttgaa 3632864 3633916 F yhiM yhiMp3 Sigma70 3632655 3632660 GTAAAA 17 3632678 3632683 TAATCT 3632688 2.656 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattGTAAAAaacaacagcataagaatTAATCTtaggAtaaat 3632864 3633916 F yhiM yhiMp4 Sigma70 3632793 3632798 ATTATA 15 3632814 3632819 TATCAT 3632824 2.66 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtcATTATAttaacaggatgaaatTATCATtaatGcatat 3632864 3633916 F yhiM yhiMp5 Sigma70 3632771 3632776 TTGTCT 15 3632792 3632797 CATTAT 3632802 2.81 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcatTTGTCTttaatgatatctcgtCATTATattaAcagga 3632864 3633916 F yhiM yhiMp6 Sigma70 3632771 3632776 TTGTCT 20 3632797 3632802 TATTAA 3632807 2.904 poor homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcatTTGTCTttaatgatatctcgtcattaTATTAAcaggAtgaaa 3632864 3633916 F yhiM yhiMp9 Sigma70 3632771 3632776 TTGTCT 18 3632795 3632800 TATATT 3632806 4.768 high homology 3.20E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcatTTGTCTttaatgatatctcgtcatTATATTaacagGatgaa 3634231 3635433 R yhiN yhiNp1 Sigma70 3635552 3635557 TTCACT 16 3635530 3635535 TATATA 3635524 2.663 poor homology 0.000401622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTCACTcaaaaaataattatctTATATAattcaGgcaaa 3634231 3635433 R yhiN yhiNp3 Sigma70 3635492 3635497 ATGCTG 21 3635465 3635470 TACAAT 3635460 2.893 poor homology 0.000220415 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattgATGCTGgtgcgaccactgaggaatcttTACAATtcacGcccgt 3634231 3635433 R yhiN yhiNp5 Sigma70 3635495 3635500 TTGATG 17 3635472 3635477 GAATCT 3635466 3.986 good homology 0.000209665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTGATGctggtgcgaccactgagGAATCTttacaAttcac 3634231 3635433 R yhiN yhiNp6 Sigma70 3635553 3635558 TTTCAC 19 3635528 3635533 TATAAT 3635523 4.04 high homology 2.10E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggaTTTCACtcaaaaaataattatcttaTATAATtcagGcaaat 3638885 3640354 F dtpB dtpBp1 Sigma70 3638847 3638852 TTCATA 18 3638871 3638876 GAAGGT 3638882 2.338 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgTTCATActtttcaggatggtattgGAAGGTtaataAatatg 3638885 3640354 F dtpB dtpBp2 Sigma70 3638726 3638731 TTCCAT 20 3638752 3638757 TATTTT 3638763 2.974 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattTTCCATcattagtgtgatcatctggtTATTTTctgttGtaata 3638885 3640354 F dtpB dtpBp3 Sigma70 3638790 3638795 ATCAAT 21 3638817 3638822 TAAACT 3638828 3.013 poor homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcATCAATattaagaatctctgacagatgTAAACTttttcGcgcgt 3638885 3640354 F dtpB dtpBp4 Sigma70 3638754 3638759 TTTTCT 15 3638775 3638780 TAATCT 3638785 3.27 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTTTCTgttgtaatagtgtatTAATCTattcAccgca 3650205 3651221 R insH insHp1 Sigma70 3651292 3651297 TTGGGG 17 3651269 3651274 TAAAAA 3651264 3.066 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTGGGGgtagggtgttctttatgTAAAAAaataGtgtca 3650205 3651221 R insH insHp2 Sigma70 3651322 3651327 TTGTCA 16 3651300 3651305 TATATA 3651294 3.183 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtTTGTCAagatattgtccatcttTATATAatttgGgggta 3650205 3651221 R insH insHp3 Sigma70 3651322 3651327 TTGTCA 20 3651296 3651301 TAATTT 3651291 3.404 good homology 7.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtTTGTCAagatattgtccatctttataTAATTTggggGtaggg 3650205 3651221 R insH insHp4 Sigma70 3651322 3651327 TTGTCA 18 3651298 3651303 TATAAT 3651292 5.758 high homology 2.50E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgtTTGTCAagatattgtccatctttaTATAATttgggGgtagg 3653278 3653925 R yhiD yhiDp2 Sigma70 3654072 3654077 TTCCTA 16 3654050 3654055 TAAGAA 3654043 2.043 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaaaTTCCTAaagtgatcgaatactgTAAGAAaaacccGcagaa 3653278 3653925 R yhiD yhiDp3 Sigma70 3654028 3654033 TTGTAT 20 3654002 3654007 TAATGA 3653995 2.144 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTGTATaccttcaaaaatcaagcatcTAATGActtgccGaatta 3653278 3653925 R yhiD yhiDp4 Sigma70 3654098 3654103 TTTAAA 16 3654076 3654081 CAAATT 3654070 2.263 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttacTTTAAAtgaaaccgatctcactCAAATTcctaaAgtgat 3653278 3653925 R yhiD yhiDp5 Sigma70 3654142 3654147 ATGCTG 15 3654121 3654126 TATAAA 3654116 2.29 poor homology 0.000841773 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtggATGCTGcatgaagaaacagtaTATAAAggtgGcgata 3653278 3653925 R yhiD yhiDp8 Sigma70 3654093 3654098 ATGAAA 19 3654068 3654073 TAAAGT 3654062 3.96 good homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaATGAAAccgatctcactcaaattccTAAAGTgatcgAatact 3653278 3653925 R yhiD yhiDp9 Sigma70 3653995 3654000 TTGCCG 17 3653972 3653977 TAAAAA 3653966 4.506 high homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgacTTGCCGaattaatgaggtgcaagTAAAAAggagtAgcaag 3667615 3669264 F treF treFp2 Sigma70 3667377 3667382 TTACCC 15 3667398 3667403 TATCAT 3667408 3.02 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcctaTTACCCagatcaggaatggcaTATCATgattGcggcg 3667615 3669264 F treF treFp3 Sigma70 3667472 3667477 TTCCAT 16 3667494 3667499 TATTTT 3667505 3.293 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTCCATtgatattagtgcgttaTATTTTttgacAggtta 3667615 3669264 F treF treFp4 Sigma70 3667438 3667443 ATGAAA 16 3667460 3667465 TATTTT 3667471 3.523 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaATGAAAaacaacaccaaatcggTATTTTtataaAttcca 3667615 3669264 F treF treFp5 Sigma70 3667465 3667470 TTATAA 21 3667492 3667497 TATATT 3667503 3.583 good homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTATAAattccattgatattagtgcgtTATATTttttgAcaggt 3667615 3669264 F treF treFp6 Sigma70 3667557 3667562 ATGACT 17 3667580 3667585 GATAAT 3667591 4.366 high homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgaATGACTacccttaaagaaaagccGATAATtagcgAcgaat 3669315 3669917 R yhjB yhjBp1 Sigma70 3670146 3670151 TTTAAT 18 3670122 3670127 CAATAT 3670116 2.698 poor homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcattTTTAATtgcatgcgtactaaccacCAATATaaggaAatcct 3669315 3669917 R yhjB yhjBp3 Sigma70 3670061 3670066 TTAGCT 21 3670034 3670039 TATTTT 3670029 2.833 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgtTTAGCTgtaactatttatatcggtaacTATTTTctacAcgtca 3669315 3669917 R yhjB yhjBp4 Sigma70 3670096 3670101 TTTAAA 16 3670074 3670079 TAATTT 3670068 3.673 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgtTTTAAAtagtgccctcgacatgTAATTTcaggcGtttag 3671385 3672398 F yhjD yhjDp3 Sigma70 3671316 3671321 ATGAAA 17 3671339 3671344 GACTAT 3671351 3.446 good homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaATGAAAgagtacctggactgaccGACTATacttttTaagaa 3671385 3672398 F yhjD yhjDp5 Sigma70 3671316 3671321 ATGAAA 20 3671342 3671347 TATACT 3671353 4.344 high homology 1.24E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaATGAAAgagtacctggactgaccgacTATACTttttaAgaatg 3672809 3674131 F yhjE yhjEp5 Sigma70 3672666 3672671 TTTCAT 19 3672691 3672696 TAAACA 3672702 2.88 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTTCATagaagaaaaatcactggccTAAACAttatcCccttt 3672809 3674131 F yhjE yhjEp6 Sigma70 3672613 3672618 TTTATT 17 3672636 3672641 TATCCA 3672648 3.156 good homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taactTTTATTtaacctgaaaccagtttTATCCActatttAtaaaa 3672809 3674131 F yhjE yhjEp7 Sigma70 3672719 3672724 TTGACC 15 3672740 3672745 TACACA 3672751 3.24 good homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatttTTGACCatttccgcgattTGtTACACAttgaaAtatca 3672809 3674131 F yhjE yhjEp8 Sigma70 3672623 3672628 CTGAAA 20 3672649 3672654 TAAAAT 3672660 4.044 high homology 2.62E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaacCTGAAAccagttttatccactatttaTAAAATtatgtGaagca 3672809 3674131 F yhjE yhjEp9 Sigma70 3672746 3672751 TTGAAA 18 3672770 3672775 TAATAT 3672780 5.868 high homology 1.23E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacaTTGAAAtatcacttttgctgtgcgTAATATggctAttcgt 3677442 3678371 F kdgK kdgKp1 Sigma70 3677346 3677351 CTCAAA 20 3677372 3677377 TAATAT 3677383 2.294 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggCTCAAAaaaataatggaacactgtttTAATATggttgAccagc 3677442 3678371 F kdgK kdgKp4 Sigma70 3677380 3677385 TTGACC 17 3677403 3677408 CAAACT 3677415 3.856 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatggTTGACCagcaaaccaccacagcgCAAACTaacgctAatttt 3681653 3683641 R yhjK yhjKp2 Sigma70 3683698 3683703 CTTAAT 15 3683677 3683682 TATACT 3683671 3.4 good homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctctCTTAATgccgctgcgatcgggTATACTcgggcGgcaat 3683723 3687196 R bcsC bcsCp1 Sigma70 3687382 3687387 TTTTCT 19 3687357 3687362 TACAAA 3687351 2.05 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcggtTTTTCTgccgccatgctgcccttttTACAAAaccgcGatgcg 3694020 3694208 R yhjR yhjRp1 Sigma70 3694326 3694331 TTGCGT 21 3694299 3694304 CAAATT 3694294 1.753 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTGCGTaacggaaagtcaaaaagtgagCAAATTcccgTctcgc 3694020 3694208 R yhjR yhjRp2 Sigma70 3694379 3694384 TTAGAA 15 3694358 3694363 GATTTT 3694352 2.04 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcaatTTAGAAggtcacaagacgTGtGATTTTagtctTttcgt 3694020 3694208 R yhjR yhjRp3 Sigma70 3694275 3694280 ATAAAC 18 3694251 3694256 TAGAAT 3694244 2.318 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaacaATAAACcggcgaaatgctcacggtTAGAATtgtctcAtgaac 3694020 3694208 R yhjR yhjRp4 Sigma70 3694379 3694384 TTAGAA 20 3694353 3694358 TAGTCT 3694348 2.444 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTAGAAggtcacaagacgtgtgatttTAGTCTtttcGttttt 3694020 3694208 R yhjR yhjRp6 Sigma70 3694252 3694257 TTAGAA 15 3694231 3694236 TACGGT 3694224 2.59 poor homology 0.000617396 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacggTTAGAAttgtctcatgaacggTACGGTtatttcAtaggg 3694020 3694208 R yhjR yhjRp7 Sigma70 3694450 3694455 TTACTA 21 3694423 3694428 TACCAT 3694418 2.933 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagtTTACTAgcgaaagctaagaaataaaccTACCATtgaaAttaaa 3694020 3694208 R yhjR yhjRp8 Sigma70 3694339 3694344 TTAACT 17 3694316 3694321 GAAAGT 3694310 3.856 good homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtttTTAACTttttctgttgcgtaacgGAAAGTcaaaaAgtgag 3694020 3694208 R yhjR yhjRp11 Sigma70 3694418 3694423 TTGAAA 17 3694395 3694400 TAGCAT 3694390 5.346 high homology 5.45E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taccaTTGAAAttaaaacttatcagattTAGCATgtgaAtcaat 3694481 3696052 F bcsE bcsEp1 Sigma70 3694356 3694361 CTAAAA 20 3694382 3694387 TAAATT 3694393 2.144 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagaCTAAAAtcacacgtcttgtgaccttcTAAATTgattcAcatgc 3694481 3696052 F bcsE bcsEp2 Sigma70 3694413 3694418 TTTAAT 21 3694440 3694445 TAGCTT 3694451 2.373 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagtTTTAATttcaatggtaggtttatttctTAGCTTtcgctAgtaaa 3694481 3696052 F bcsE bcsEp5 Sigma70 3694252 3694257 TTCTAA 20 3694278 3694283 TATTGT 3694289 2.834 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacaaTTCTAAccgtgagcatttcgccggttTATTGTttacgGcgaga 3694481 3696052 F bcsE bcsEp6 Sigma70 3694318 3694323 TTTCCG 18 3694342 3694347 TAAAAA 3694353 2.888 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgacTTTCCGttacgcaacagaaaaagtTAAAAAcgaaaAgacta 3694481 3696052 F bcsE bcsEp8 Sigma70 3694313 3694318 TTGACT 15 3694334 3694339 GAAAAA 3694345 3.3 good homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actttTTGACTttccgttacgcaacaGAAAAAgttaaAaacga 3694481 3696052 F bcsE bcsEp9 Sigma70 3694390 3694395 TTCACA 19 3694415 3694420 TAATTT 3694426 3.34 good homology 0.000163287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attgaTTCACAtgctaaatctgataagtttTAATTTcaatgGtaggt 3694481 3696052 F bcsE bcsEp10 Sigma70 3694435 3694440 TTTCTT 18 3694459 3694464 GATAAT 3694470 3.688 good homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaTTTCTTagctttcgctagtaaactGATAATcagacAaaatg 3694481 3696052 F bcsE bcsEp11 Sigma70 3694386 3694391 TTGATT 16 3694408 3694413 TAAGTT 3694418 3.913 good homology 4.68E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctaaaTTGATTcacatgctaaatcTGaTAAGTTttaaTttcaa 3698586 3699857 F yhjV yhjVp1 Sigma70 3698418 3698423 CTGGTA 18 3698442 3698447 TAGAAT 3698452 3.048 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagaCTGGTAgtgaaatgcgcaattttgTAGAATtgcgCctcct 3699887 3700891 R dppF dppFp1 Sigma70 3700979 3700984 ATGTCG 21 3700952 3700957 TATGCT 3700946 2.163 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacagATGTCGcgctgaagaaccggcgctgaaTATGCTcgctgAcgggc 3708822 3710030 R yhjX yhjXp1 Sigma70 3710102 3710107 TTTCCC 21 3710075 3710080 TATGGT 3710069 2.673 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgttTTTCCCcaggcataaagtgcacttcgtTATGGTtgtcgGcagag 3708822 3710030 R yhjX yhjXp2 Sigma70 3710230 3710235 TTAAAT 15 3710209 3710214 GATAGT 3710204 3.4 good homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTAAATaacaatagttgtggcGATAGTgggtGctaac 3708822 3710030 R yhjX yhjXp5 Sigma70 3710114 3710119 TTTCAT 18 3710090 3710095 TAAAGT 3710083 4.368 high homology 7.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcaTTTCATgccgtttttccccaggcaTAAAGTgcacttCgttat 3710259 3710957 R yhjY yhjYp1 Sigma70 3711115 3711120 TTCCAT 21 3711088 3711093 GATCGT 3711083 1.833 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacgTTCCATactttccctcgctatgtacccGATCGTaaaaAtttca 3710259 3710957 R yhjY yhjYp2 Sigma70 3711024 3711029 CTACTA 16 3711002 3711007 TACAAT 3710997 2.293 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagggCTACTAtgcccgatatccttcaTACAATgacaAtaata 3710259 3710957 R yhjY yhjYp4 Sigma70 3711062 3711067 TTGACG 15 3711041 3711046 CAATAT 3711035 2.83 poor homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttcTTGACGcatcggtgaaaaagtCAATATttaatAcaggg 3710259 3710957 R yhjY yhjYp8 Sigma70 3711185 3711190 TTTCAG 15 3711164 3711169 TATCAT 3711158 3.37 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcagTTTCAGgcacgccccactcatTATCATggtagGcaata 3710259 3710957 R yhjY yhjYp9 Sigma70 3711036 3711041 TTTAAT 19 3711011 3711016 TATCCT 3711006 3.79 good homology 9.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caataTTTAATacagggctactatgcccgaTATCCTtcatAcaatg 3710259 3710957 R yhjY yhjYp10 Sigma70 3711106 3711111 TTCCCT 17 3711083 3711088 TAAAAA 3711077 3.876 good homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atactTTCCCTcgctatgtacccgatcgTAAAAAtttcaGccgct 3711115 3711678 F tag tagp2 Sigma70 3710997 3711002 TTGTCA 19 3711022 3711027 CATAGT 3711034 2.78 poor homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTGTCAttgtatgaaggatatcgggCATAGTagccctGtatta 3711115 3711678 F tag tagp3 Sigma70 3710925 3710930 CTGCCA 18 3710949 3710954 TATGAT 3710960 3.848 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttagCTGCCAgcgaccaccgctttttttTATGATcattaAcacga 3712084 3714417 R bisC bisCp1 Sigma70 3714483 3714488 CTGGGA 19 3714458 3714463 TAATAT 3714451 1.92 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcCTGGGAatactcggaaatttgtaagTAATATttaactGctcaa 3712084 3714417 R bisC bisCp2 Sigma70 3714573 3714578 TTTCTT 16 3714551 3714556 TAACCT 3714546 2.963 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacgTTTCTTcattgttaatccttaaTAACCTttttAttctt 3712084 3714417 R bisC bisCp3 Sigma70 3714536 3714541 TTGCCA 15 3714515 3714520 GAGATT 3714509 3.18 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGCCAcgggttccgtggcggGAGATTatgccGcgtga 3712084 3714417 R bisC bisCp6 Sigma70 3714536 3714541 TTGCCA 17 3714513 3714518 GATTAT 3714507 5.166 high homology 3.43E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGCCAcgggttccgtggcgggaGATTATgccgcGtgaac 3712084 3714417 R bisC bisCp7 Sigma70 3714565 3714570 TTGTTA 17 3714542 3714547 TATTCT 3714536 5.386 high homology 2.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttcaTTGTTAatccttaataaccttttTATTCTttgccAcgggt 3714570 3715229 F yiaD yiaDp1 Sigma70 3714429 3714434 CTGAAA 20 3714455 3714460 TAAATA 3714467 1.864 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gactcCTGAAAggttagatgtattgagcagtTAAATAttacttAcaaat 3714570 3715229 F yiaD yiaDp2 Sigma70 3714454 3714459 TTAAAT 17 3714477 3714482 GAGTAT 3714488 3.316 good homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcagTTAAATattacttacaaatttccGAGTATtcccaGgaata 3714570 3715229 F yiaD yiaDp3 Sigma70 3714465 3714470 TTACAA 21 3714492 3714497 TAATCT 3714502 3.903 good homology 8.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attacTTACAAatttccgagtattcccaggaaTAATCTtcatGttcac 3715333 3716307 F ghrB ghrBp3 Sigma70 3715276 3715281 TTTCCT 16 3715298 3715303 TAAGGT 3715308 3.073 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagtTTTCCTtcatcatatttcaggcTAAGGTgatcGcctta 3718471 3718623 R hokA hokAp1 Sigma70 3718681 3718686 TTTCAT 21 3718654 3718659 TACATA 3718647 2.023 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccaTTTCATcgtccaacaaaatgggtgcagTACATActcgttGgaaat 3718471 3718623 R hokA hokAp4 Sigma70 3718724 3718729 TTCAAA 18 3718700 3718705 CATATT 3718695 2.768 poor homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgcttTTCAAAagggtattttggcttTGaCATATTagggGctatt 3718471 3718623 R hokA hokAp5 Sigma70 3718736 3718741 TTCAAG 16 3718714 3718719 TATTTT 3718707 3.033 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgacTTCAAGgcgcttttcaaaagggTATTTTggctttGacata 3718703 3719224 F insJ insJp1 Sigma70 3718577 3718582 GTGAAA 20 3718603 3718608 TAATCT 3718614 2.444 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaagcGTGAAAcaaatcactattaaagaaagTAATCTatattTctgcg 3718703 3719224 F insJ insJp3 Sigma70 3718586 3718591 ATCACT 16 3718608 3718613 TATATT 3718619 2.603 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaATCACTattaaagaaagtaatcTATATTtctgcGgcatt 3718703 3719224 F insJ insJp5 Sigma70 3718522 3718527 TTTAAT 16 3718544 3718549 GAATCT 3718556 2.843 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcctgTTTAATatgcaattcacacagtGAATCTcttatcAtccag 3718703 3719224 F insJ insJp7 Sigma70 3718528 3718533 ATGCAA 18 3718552 3718557 TATCAT 3718562 3.918 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaatATGCAAttcacacagtgaatctctTATCATccagGtgaaa 3720351 3722420 R glyS glySp2 Sigma70 3722619 3722624 CTGCCG 17 3722596 3722601 TATTCT 3722591 3.766 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccgCTGCCGctgccagcctacgagcgTATTCTgaaaGccgcc 3723436 3723735 R ysaB ysaBp2 Sigma70 3723910 3723915 CTGCAT 19 3723885 3723890 TAAAAA 3723878 2.42 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgggCTGCATctgtgtctctgtatctggtTAAAAAaagtctGaccga 3723436 3723735 R ysaB ysaBp4 Sigma70 3723798 3723803 TTCGTA 21 3723771 3723776 TATAAA 3723765 2.693 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggaaaTTCGTAagatatcagccactataccgaTATAAAtaataAgactc 3723436 3723735 R ysaB ysaBp5 Sigma70 3723817 3723822 TTATAG 17 3723794 3723799 TAAGAT 3723789 3.476 good homology 0.000515692 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagcTTATAGaggcttaaggaaattcgTAAGATatcaGccact 3723910 3724905 F wecH wecHp1 Sigma70 3723735 3723740 TTAAAT 19 3723760 3723765 GAGTCT 3723770 2.05 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaTTAAATtaccgtctggtttgcaggtGAGTCTtattAtttat 3723910 3724905 F wecH wecHp2 Sigma70 3723804 3723809 TTTCCT 21 3723831 3723836 GATAAA 3723842 2.153 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgaaTTTCCTtaagcctctataagctgtagtGATAAAactcaGattat 3723910 3724905 F wecH wecHp3 Sigma70 3723771 3723776 TTTATA 21 3723798 3723803 TACGAA 3723810 2.183 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTTATAtcggtatagtggctgatatctTACGAAtttcctTaagcc 3723910 3724905 F wecH wecHp4 Sigma70 3723739 3723744 ATTACC 21 3723766 3723771 TATTAT 3723776 2.323 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaATTACCgtctggtttgcaggtgagtctTATTATttatAtcggt 3723910 3724905 F wecH wecHp6 Sigma70 3723771 3723776 TTTATA 16 3723793 3723798 TATCTT 3723803 3.153 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tattaTTTATAtcggtatagtggcTGaTATCTTacgaAtttcc 3723910 3724905 F wecH wecHp7 Sigma70 3723797 3723802 TTACGA 17 3723820 3723825 TAAGCT 3723831 3.556 good homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atatcTTACGAatttccttaagcctctaTAAGCTgtagtGataaa 3725430 3725771 R yiaB yiaBp2 Sigma70 3725901 3725906 TTCACA 18 3725877 3725882 TAATTA 3725870 2.418 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gataaTTCACAtctatatatctcagtaatTAATTAatatttAgtatg 3725430 3725771 R yiaB yiaBp4 Sigma70 3725874 3725879 TTAATA 19 3725849 3725854 GAAAAT 3725843 3.33 good homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTAATAtttagtatgaatttattctGAAAATcatttGttaat 3725430 3725771 R yiaB yiaBp5 Sigma70 3725818 3725823 TTGTCT 15 3725797 3725802 TAATGT 3725790 3.93 good homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagttTTGTCTttcgttggttactcgTAATGTatcgctGgtaga 3725430 3725771 R yiaB yiaBp6 Sigma70 3725878 3725883 TTAATT 17 3725855 3725860 TATTCT 3725850 4.946 high homology 6.13E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtaaTTAATTaatatttagtatgaattTATTCTgaaaAtcatt 3725940 3727394 R xylB xylBp1 Sigma70 3727577 3727582 ATGTCA 18 3727553 3727558 TATGCT 3727547 3.288 good homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccaaATGTCActggcagatttagccaaaTATGCTcaggaAcatca 3734376 3735200 R bax baxp1 Sigma70 3735259 3735264 TTCAAC 20 3735233 3735238 TAAGGT 3735227 2.234 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgagaTTCAACtctcaaatttgtgaaaaataTAAGGTgttggAatgat 3734376 3735200 R bax baxp2 Sigma70 3735343 3735348 CTGAAT 15 3735322 3735327 TAGTTT 3735317 2.35 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccaatCTGAATcgttaacacgtgacaTAGTTTcagaTttgga 3734376 3735200 R bax baxp3 Sigma70 3735335 3735340 TTAACA 21 3735308 3735313 GACTAT 3735302 2.723 poor homology 0.000303539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTAACAcgtgacatagtttcagatttgGACTATtccttGgggtg 3734376 3735200 R bax baxp4 Sigma70 3735265 3735270 TTGAGA 18 3735241 3735246 GAAAAA 3735235 2.758 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atgatTTGAGAttcaactctcaaattTGtGAAAAAtataaGgtgtt 3734376 3735200 R bax baxp5 Sigma70 3735275 3735280 TTGATA 19 3735250 3735255 CAAATT 3735244 2.9 poor homology 8.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTGATAtgatttgagattcaactctCAAATTtgtgaAaaata 3734376 3735200 R bax baxp7 Sigma70 3735288 3735293 TTGACA 19 3735263 3735268 GAGATT 3735257 3.24 good homology 2.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctcTTGACAgctatttttgatatgatttGAGATTcaactCtcaaa 3734376 3735200 R bax baxp9 Sigma70 3735303 3735308 TTCCTT 17 3735280 3735285 TATTTT 3735275 3.986 good homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gactaTTCCTTggggtgctcttgacagcTATTTTtgatAtgatt 3739132 3739605 R ysaA ysaAp1 Sigma70 3739698 3739703 TTTGGA 15 3739677 3739682 TAACAT 3739670 2.3 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgcTTTGGAcaagtgccaaaacttTAACATttccttCgttgg 3749151 3749891 R yiaT yiaTp1 Sigma70 3749957 3749962 TTGCAC 15 3749936 3749941 CATTAT 3749929 2.76 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatcTTGCACcggagaaattgtaagCATTATtatgccGactct 3749151 3749891 R yiaT yiaTp3 Sigma70 3750017 3750022 TTTGTC 20 3749991 3749996 TATAAT 3749985 3.004 poor homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTTGTCatcgcaacagcccaattataTATAATtttatAtatta 3749151 3749891 R yiaT yiaTp4 Sigma70 3749929 3749934 ATGCCG 19 3749904 3749909 TAAAAT 3749898 3.38 good homology 8.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattATGCCGactcttttttatcttatttTAAAATggaatAccgga 3749151 3749891 R yiaT yiaTp5 Sigma70 3749985 3749990 TTTATA 17 3749962 3749967 GAATCT 3749955 3.736 good homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataatTTTATAtattactatataaatatGAATCTtgcaccGgagaa 3749151 3749891 R yiaT yiaTp6 Sigma70 3750016 3750021 TTGTCA 21 3749989 3749994 TAATTT 3749983 3.753 good homology 7.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTGTCAtcgcaacagcccaattatataTAATTTtatatAttact 3749151 3749891 R yiaT yiaTp7 Sigma70 3750016 3750021 TTGTCA 17 3749993 3749998 TATATA 3749987 4.186 high homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTGTCAtcgcaacagcccaattaTATATAattttAtatat 3749151 3749891 R yiaT yiaTp8 Sigma70 3749957 3749962 TTGCAC 18 3749933 3749938 TATTAT 3749928 4.948 high homology 2.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatcTTGCACcggagaaattgtaagcatTATTATgccgActctt 3750015 3750989 F yiaU yiaUp1 Sigma70 3749964 3749969 ATTCAT 15 3749985 3749990 TATAAA 3749996 2.15 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaagATTCATatttatatagtaataTATAAAattatAtataa 3750015 3750989 F yiaU yiaUp2 Sigma70 3749943 3749948 TTACAA 18 3749967 3749972 CATATT 3749978 2.558 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcTTACAAtttctccggtgcaagattCATATTtatatAgtaat 3750015 3750989 F yiaU yiaUp3 Sigma70 3749949 3749954 TTTCTC 20 3749975 3749980 TATAGT 3749986 2.914 poor homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTTCTCcggtgcaagattcatatttaTATAGTaatatAtaaaa 3750015 3750989 F yiaU yiaUp4 Sigma70 3749917 3749922 ATAAAA 21 3749944 3749949 TACAAT 3749956 3.143 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataagATAAAAaagagtcggcataataatgctTACAATttctccGgtgca 3750015 3750989 F yiaU yiaUp7 Sigma70 3749794 3749799 TTATAA 18 3749818 3749823 GATAAT 3749829 3.518 good homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTATAAgccgcaccagcaccaatgGATAATtcagaAgcagt 3750015 3750989 F yiaU yiaUp8 Sigma70 3749972 3749977 TTATAT 19 3749997 3750002 TATAAT 3750009 4.08 high homology 2.00E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatTTATATagtaatatataaaattataTATAATtgggctGttgcg 3750015 3750989 F yiaU yiaUp9 Sigma70 3749965 3749970 TTCATA 16 3749987 3749992 TAAAAT 3749998 4.533 high homology 2.08E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caagaTTCATAtttatatagtaatataTAAAATtatatAtaatt 3750015 3750989 F yiaU yiaUp11 Sigma70 3749885 3749890 TTAACA 17 3749908 3749913 TAAAAT 3749919 5.836 high homology 1.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTAACAtgtccggtattccatttTAAAATaagatAaaaaa 3750986 3752122 R yiaV yiaVp1 Sigma70 3752364 3752369 TTCCCT 19 3752339 3752344 TAATCA 3752333 2.05 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTCCCTacctgattgccaaaaaacgTAATCAtcctcAtgccg 3750986 3752122 R yiaV yiaVp2 Sigma70 3752310 3752315 TTGCTG 16 3752288 3752293 TACGTT 3752283 2.703 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatgTTGCTGgttgggtgagtcttttTACGTTacatGttatc 3750986 3752122 R yiaV yiaVp3 Sigma70 3752218 3752223 ATGCAA 17 3752195 3752200 TATGCA 3752189 3.176 good homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaATGCAAagccatgattcatccgtTATGCAactgcAacagc 3754699 3755850 R yiaY yiaYp1 Sigma70 3756015 3756020 TTAAAA 19 3755990 3755995 TATGAA 3755984 2.95 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttTTAAAAtaaattaatacaaaattctTATGAAtttaaAaaaag 3754699 3755850 R yiaY yiaYp2 Sigma70 3755962 3755967 ATGAAT 16 3755940 3755945 TAGATT 3755933 2.963 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaATGAATacaatgtgctttttatTAGATTaattttGataat 3754699 3755850 R yiaY yiaYp4 Sigma70 3755930 3755935 TTGATA 15 3755909 3755914 CATATT 3755903 3.42 good homology 6.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTGATAatcaataatactgatCATATTttcgaAtgaaa 3754699 3755850 R yiaY yiaYp6 Sigma70 3755984 3755989 TTTAAA 21 3755957 3755962 TACAAT 3755951 4.693 high homology 1.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgaaTTTAAAaaaagcacattgtttaatgaaTACAATgtgctTtttat 3754699 3755850 R yiaY yiaYp7 Sigma70 3755930 3755935 TTGATA 17 3755907 3755912 TATTTT 3755901 5.666 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taattTTGATAatcaataatactgatcaTATTTTcgaatGaaaat 3756040 3757884 R selB selBp2 Sigma70 3757952 3757957 TTTATG 21 3757925 3757930 TACGCT 3757919 2.603 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtaTTTATGacggacgattgtggctggattTACGCTgccttGaagat 3756040 3757884 R selB selBp3 Sigma70 3757916 3757921 TTGAAG 19 3757891 3757896 GATGTT 3757885 2.67 poor homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgccTTGAAGatgagcaacggtttttggaGATGTTgttgaAatgat 3756040 3757884 R selB selBp5 Sigma70 3757977 3757982 TTGCCA 17 3757954 3757959 TATTTA 3757948 4.216 high homology 7.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgaaTTGCCAgtgccggtgattggtcgTATTTAtgacgGacgat 3760206 3764339 F rhsA rhsAp1 Sigma70 3760069 3760074 ATCACA 21 3760096 3760101 TATTTT 3760106 2.273 poor homology 0.000689186 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaATCACAtatttatcatggtgatataaaTATTTTcctaAttatt 3760206 3764339 F rhsA rhsAp2 Sigma70 3760069 3760074 ATCACA 15 3760090 3760095 TATAAA 3760101 2.37 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aataaATCACAtatttatcatggTGaTATAAAtatttTcctaa 3760206 3764339 F rhsA rhsAp3 Sigma70 3760120 3760125 ATGGAT 19 3760145 3760150 TATAAA 3760156 2.45 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctctgATGGATatctcacttcaggctttctTATAAAtctgtAgggtt 3760206 3764339 F rhsA rhsAp4 Sigma70 3760052 3760057 TTGTTA 17 3760075 3760080 TATTTA 3760086 3.416 good homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggtTTGTTActtccaaataaatcacaTATTTAtcatgGtgata 3760206 3764339 F rhsA rhsAp5 Sigma70 3760055 3760060 TTACTT 18 3760079 3760084 TATCAT 3760089 3.748 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttgTTACTTccaaataaatcacatattTATCATggtgAtataa 3766200 3766661 F yibG yibGp1 Sigma70 3766065 3766070 TTCAAA 15 3766086 3766091 TATAAC 3766097 2.6 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttaaTTCAAAtaaggatctaatggcTATAACaacaaAagacc 3766200 3766661 F yibG yibGp2 Sigma70 3766142 3766147 TTTCTA 17 3766165 3766170 GAAAAA 3766175 2.816 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccccaTTTCTAatatgcaaggtacgccaGAAAAAcccaGtgata 3766200 3766661 F yibG yibGp5 Sigma70 3766065 3766070 TTCAAA 17 3766088 3766093 TAACAA 3766099 3.396 good homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttaaTTCAAAtaaggatctaatggctaTAACAAcaaaaGacctt 3774194 3774403 R yibT yibTp2 Sigma70 3774550 3774555 TTAATT 21 3774523 3774528 TAATAA 3774517 2.503 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTAATTaagaaatctatagaaaaaagaTAATAAacagcAgcgga 3774194 3774403 R yibT yibTp3 Sigma70 3774554 3774559 TTGATT 16 3774532 3774537 GAAAAA 3774526 2.913 poor homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgTTGATTaattaagaaatctataGAAAAAagataAtaaac 3774194 3774403 R yibT yibTp5 Sigma70 3774475 3774480 ATGTCA 20 3774449 3774454 TAAAAT 3774443 3.304 good homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaATGTCAtctttaccgggaacctaaacTAAAATtggcgGccgcg 3774194 3774403 R yibT yibTp6 Sigma70 3774550 3774555 TTAATT 19 3774525 3774530 GATAAT 3774519 3.42 good homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTAATTaagaaatctatagaaaaaaGATAATaaacaGcagcg 3774194 3774403 R yibT yibTp7 Sigma70 3774478 3774483 TTAATG 18 3774454 3774459 TAAACT 3774447 4.038 high homology 6.91E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttccTTAATGtcatctttaccgggaaccTAAACTaaaattGgcggc 3774194 3774403 R yibT yibTp8 Sigma70 3774500 3774505 TTGAGG 17 3774477 3774482 TAATGT 3774470 4.106 high homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTGAGGattcagcacgttttcctTAATGTcatcttTaccgg 3774688 3775050 F yibL yibLp1 Sigma70 3774622 3774627 TTGTGA 18 3774646 3774651 CATACT 3774656 2.618 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attagTTGTGAacaaagcacctggtcgcgCATACTagggGctata 3774688 3775050 F yibL yibLp5 Sigma70 3774501 3774506 CTCAAT 17 3774524 3774529 TATTAT 3774535 3.706 good homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatcCTCAATaatcatccgctgctgttTATTATcttttTtctat 3774688 3775050 F yibL yibLp6 Sigma70 3774587 3774592 ATGATT 15 3774608 3774613 TACAAT 3774620 3.87 good homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaATGATTacgttacagaactatTACAATgtcattAgttgt 3780665 3781684 R gpsA gpsAp1 Sigma70 3781927 3781932 TTCCTG 20 3781901 3781906 TATTTT 3781896 2.104 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcgTTCCTGtgtgaagttcagcagggcggTATTTTctccAtcgcg 3780665 3781684 R gpsA gpsAp2 Sigma70 3781844 3781849 CTGCCC 16 3781822 3781827 TATGCT 3781816 2.333 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcataCTGCCCgaacattctgttcccgTATGCTcgtgaGtgcat 3780665 3781684 R gpsA gpsAp5 Sigma70 3781859 3781864 TTGCCT 15 3781838 3781843 GAACAT 3781833 3.34 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcaTTGCCTgggagcatactgcccGAACATtctgTtcccg 3780665 3781684 R gpsA gpsAp6 Sigma70 3781859 3781864 TTGCCT 18 3781835 3781840 CATTCT 3781828 3.408 good homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgcaTTGCCTgggagcatactgcccgaaCATTCTgttcccGtatgc 3782214 3782465 R grxC grxCp1 Sigma70 3782567 3782572 CTGCAA 17 3782544 3782549 TATTGT 3782538 4.256 high homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttagCTGCAAttaggcccccagcgactTATTGTtataaGcttct 3782214 3782465 R grxC grxCp2 Sigma70 3782625 3782630 TTGCCT 15 3782604 3782609 TAATTT 3782599 4.27 high homology 4.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaacTTGCCTttggtgcgcggcaaaTAATTTacctGtcgtc 3782607 3783038 R yibN yibNp1 Sigma70 3783247 3783252 TTGCGT 20 3783221 3783226 GATAAA 3783216 1.844 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatTTGCGTaattttactacagctgaatcGATAAAatagCctctg 3782607 3783038 R yibN yibNp2 Sigma70 3783228 3783233 CTGAAT 16 3783206 3783211 GAAGAT 3783201 2.123 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacagCTGAATcgataaaatagcctctGAAGATcaaaAtatac 3782607 3783038 R yibN yibNp4 Sigma70 3783278 3783283 TTGCGA 19 3783253 3783258 CAAAAT 3783248 2.65 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaTTGCGAcaacctcatactcaagagtCAAAATttgcGtaatt 3782607 3783038 R yibN yibNp5 Sigma70 3783238 3783243 TTTACT 18 3783214 3783219 TAGCCT 3783208 3.238 good homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTTACTacagctgaatcgataaaaTAGCCTctgaaGatcaa 3782607 3783038 R yibN yibNp7 Sigma70 3783112 3783117 CTGGCT 21 3783085 3783090 TATACT 3783079 3.413 good homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgCTGGCTgtatttgccgcaccgcgcaggTATACTcctttCctggt 3788343 3789368 R tdh tdhp1 Sigma70 3789575 3789580 TTGGTG 16 3789553 3789558 GAAATT 3789547 2.193 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgcTTGGTGatgcggtagtggcgcaGAAATTtgcccGtgagc 3790849 3791706 R yibB yibBp1 Sigma70 3791797 3791802 ATAAAT 20 3791771 3791776 TAATAT 3791765 2.394 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgATAAATaacggaagcatttgaatggaTAATATacagtAtacat 3790849 3791706 R yibB yibBp2 Sigma70 3791776 3791781 ATGGAT 21 3791749 3791754 TAATAT 3791743 3.083 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaATGGATaatatacagtatacattctatTAATATttatgAtataa 3790849 3791706 R yibB yibBp4 Sigma70 3791800 3791805 ATGATA 21 3791773 3791778 GATAAT 3791767 3.373 good homology 0.000201444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatgtATGATAaataacggaagcatttgaatgGATAATatacaGtatac 3790849 3791706 R yibB yibBp5 Sigma70 3791845 3791850 TTGGTT 19 3791820 3791825 TAGTAT 3791815 3.5 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggatgTTGGTTttgcatgtgaatagtgcttTAGTATcaatAttccg 3790849 3791706 R yibB yibBp8 Sigma70 3791780 3791785 TTGAAT 17 3791757 3791762 CATTCT 3791752 4.396 high homology 3.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcatTTGAATggataatatacagtataCATTCTattaAtattt 3790849 3791706 R yibB yibBp9 Sigma70 3791780 3791785 TTGAAT 15 3791759 3791764 TACATT 3791753 4.85 high homology 9.45E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcatTTGAATggataatatacagtaTACATTctattAatatt 3796262 3797335 R waaU waaUp1 Sigma70 3797367 3797372 ATTAAT 19 3797342 3797347 TATGGT 3797336 2.23 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaATTAATcatcctgaaactaaaataaTATGGTataaaAatgcg 3796262 3797335 R waaU waaUp2 Sigma70 3797367 3797372 ATTAAT 16 3797345 3797350 TAATAT 3797339 2.813 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgctaATTAATcatcctgaaactaaaaTAATATggtatAaaaat 3796262 3797335 R waaU waaUp4 Sigma70 3797401 3797406 ATGCAA 21 3797374 3797379 TATGCT 3797368 3.593 good homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaATGCAAtatagaacttcaaccgattctTATGCTaattaAtcatc 3796262 3797335 R waaU waaUp5 Sigma70 3797478 3797483 TTTCTT 19 3797453 3797458 TAAACT 3797447 3.95 good homology 4.11E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctaTTTCTTacgatgtaattccatttatTAAACTtcaagAcatca 3796262 3797335 R waaU waaUp6 Sigma70 3797551 3797556 TTGCCA 20 3797525 3797530 TAATGT 3797519 4.224 high homology 2.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaataTTGCCAttttttcgttttatgcaTGaTAATGTaaaagAtatta 3796262 3797335 R waaU waaUp7 Sigma70 3797533 3797538 ATGCAT 17 3797510 3797515 TAATAT 3797504 4.536 high homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttATGCATgataatgtaaaagatatTAATATttataAtttat 3796262 3797335 R waaU waaUp8 Sigma70 3797551 3797556 TTGCCA 18 3797527 3797532 GATAAT 3797521 5.118 high homology 1.67E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGCCAttttttcgttttatgcatGATAATgtaaaAgatat 3813150 3813791 R pyrE pyrEp1 Sigma70 3813886 3813891 TTGTAG 21 3813859 3813864 CAAACT 3813852 2.263 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atccaTTGTAGcgacgcagaaggcggcgcTGgCAAACTgattttTaaggc 3813150 3813791 R pyrE pyrEp2 Sigma70 3813826 3813831 TTTTTT 15 3813805 3813810 TAAGAT 3813799 2.99 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgccTTTTTTttgtctgtagaaaagTAAGATgaggaGcgaag 3816897 3817514 F yicG yicGp3 Sigma70 3816698 3816703 TTTCTT 19 3816723 3816728 TATTTT 3816734 3.1 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaccTTTCTTttccccctcagttttaaccTATTTTttcttAtgcat 3816897 3817514 F yicG yicGp5 Sigma70 3816691 3816696 TTGCAC 21 3816718 3816723 TAACCT 3816729 3.593 good homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTGCACctttcttttccccctcagtttTAACCTattttTtctta 3817511 3819193 R ligB ligBp1 Sigma70 3819312 3819317 TTGCCT 21 3819285 3819290 GATTTT 3819279 3.203 good homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcatTTGCCTgtcattcactgcaataaagacGATTTTcaggaAgcgtc 3817511 3819193 R ligB ligBp2 Sigma70 3819312 3819317 TTGCCT 18 3819288 3819293 GACGAT 3819282 3.448 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcatTTGCCTgtcattcactgcaataaaGACGATtttcaGgaagc 3825483 3826688 R gltS gltSp1 Sigma70 3826877 3826882 TTAAAT 20 3826851 3826856 TATAAC 3826845 1.994 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTAAATgagataaatgcacttttttaTATAACttttgGtattt 3825483 3826688 R gltS gltSp3 Sigma70 3826745 3826750 TTGCCA 19 3826720 3826725 GAGTAT 3826714 3.18 good homology 7.56E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaagTTGCCActgcgcgatgaagtatgacGAGTATgaaagAgtgat 3825483 3826688 R gltS gltSp4 Sigma70 3826877 3826882 TTAAAT 18 3826853 3826858 TATATA 3826846 3.228 good homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTAAATgagataaatgcactttttTATATAacttttGgtatt 3825483 3826688 R gltS gltSp6 Sigma70 3826819 3826824 ATGCCA 17 3826796 3826801 GAGAAT 3826791 3.356 good homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccATGCCAtttgttcattaacagctGAGAATttgaCccagg 3825483 3826688 R gltS gltSp7 Sigma70 3826850 3826855 ATAACT 17 3826827 3826832 TAAAAT 3826822 4.186 high homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatATAACTtttggtatttttctgctTAAAATccatGccatt 3826968 3828359 F xanP xanPp1 Sigma70 3826829 3826834 TTTAAG 18 3826853 3826858 TATATA 3826864 2.768 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTTAAGcagaaaaataccaaaagtTATATAaaaaaGtgcat 3826968 3828359 F xanP xanPp2 Sigma70 3826829 3826834 TTTAAG 20 3826855 3826860 TATAAA 3826866 2.844 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggatTTTAAGcagaaaaataccaaaagttaTATAAAaaagtGcattt 3826968 3828359 F xanP xanPp4 Sigma70 3826910 3826915 TTGCTT 16 3826932 3826937 TAAAAT 3826942 5.223 high homology 4.98E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgtTTGCTTttctctttcggtcagcTAAAATgcccGctttg 3830242 3832560 R yicI yicIp1 Sigma70 3832743 3832748 TTAGCA 19 3832718 3832723 GATTGT 3832713 1.97 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgaTTAGCAtcattattgcgctattcacGATTGTtccgGcgatc 3830242 3832560 R yicI yicIp2 Sigma70 3832802 3832807 CTGGAT 16 3832780 3832785 TATGAT 3832774 2.863 poor homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcggCTGGATgctggcttatggcggaTATGATgcggcAgaaaa 3834976 3836160 F setC setCp1 Sigma70 3834827 3834832 CTAATA 19 3834852 3834857 TAATAT 3834864 2.32 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaCTAATAatctcaattgctggccctaTAATATtgcgctAgcatt 3834976 3836160 F setC setCp2 Sigma70 3834806 3834811 TTAATT 16 3834828 3834833 TAATAA 3834839 2.473 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaTTAATTcttaacatgcttttacTAATAAtctcaAttgct 3834976 3836160 F setC setCp8 Sigma70 3834806 3834811 TTAATT 19 3834831 3834836 TAATCT 3834842 3.59 good homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaTTAATTcttaacatgcttttactaaTAATCTcaattGctggc 3834976 3836160 F setC setCp9 Sigma70 3834840 3834845 TTGCTG 17 3834863 3834868 TAGCAT 3834874 3.986 good homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcaaTTGCTGgccctataatattgcgcTAGCATtgcttTctggt 3834976 3836160 F setC setCp10 Sigma70 3834757 3834762 ATCAAA 18 3834781 3834786 TATAAT 3834791 4.078 high homology 3.14E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttactATCAAAaatagctcattgccttacTATAATtaatAtataa 3834976 3836160 F setC setCp12 Sigma70 3834868 3834873 TTGCTT 15 3834889 3834894 GATACT 3834900 4.25 high homology 4.45E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcaTTGCTTtctggttgtatcagcGATACTcaaaaAttctt 3834976 3836160 F setC setCp13 Sigma70 3834823 3834828 TTTACT 21 3834850 3834855 TATAAT 3834861 5.053 high homology 5.79E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgctTTTACTaataatctcaattgctggcccTATAATattgcGctagc 3836271 3837194 F yicL yicLp1 Sigma70 3836123 3836128 TTGCGA 19 3836148 3836153 TAAAGA 3836159 2.68 poor homology 0.000342239 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtaTTGCGAtgatttgcctgctgtttatTAAAGAtatttAgctca 3836271 3837194 F yicL yicLp2 Sigma70 3836128 3836133 ATGATT 18 3836152 3836157 GATATT 3836164 2.738 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcgATGATTtgcctgctgtttattaaaGATATTtagctcAccagt 3836271 3837194 F yicL yicLp4 Sigma70 3836123 3836128 TTGCGA 16 3836145 3836150 TATTAA 3836155 3.033 poor homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggtaTTGCGAtgatttgcctgctgttTATTAAagatAtttag 3836271 3837194 F yicL yicLp5 Sigma70 3836133 3836138 TTGCCT 15 3836154 3836159 TATTTA 3836164 3.18 good homology 0.000110555 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgatTTGCCTgctgtttattaaagaTATTTAgctcAccagt 3838238 3838531 F yicS yicSp1 Sigma70 3837996 3838001 ATGATG 20 3838022 3838027 TATCCT 3838034 2.224 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtagATGATGtgttgtcagtttcattttttTATCCTtttattAatgat 3838238 3838531 F yicS yicSp2 Sigma70 3838098 3838103 ATAAAA 16 3838120 3838125 TATAAA 3838131 2.373 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaATAAAAaggaataaaagtggaaTATAAAgtctgGcactt 3838238 3838531 F yicS yicSp4 Sigma70 3838172 3838177 ATGAGA 21 3838199 3838204 TATGCT 3838211 2.823 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatgATGAGAgcgatgaaagcaaactacactTATGCTtcattcGataca 3838238 3838531 F yicS yicSp5 Sigma70 3838004 3838009 TTGTCA 20 3838030 3838035 TATTAA 3838041 3.104 poor homology 0.000108366 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgtgTTGTCAgtttcatttttttatcctttTATTAAtgattAcctga 3838238 3838531 F yicS yicSp6 Sigma70 3838172 3838177 ATGAGA 15 3838193 3838198 TACACT 3838203 3.13 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatgATGAGAgcgatgaaagcaaacTACACTtatgCttcat 3838238 3838531 F yicS yicSp7 Sigma70 3838070 3838075 TTTAAA 17 3838093 3838098 TAAGAA 3838104 3.826 good homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcggTTTAAAaaacgaaacgctatcgaTAAGAAtaaaaAggaat 3839973 3840425 R yicN yicNp1 Sigma70 3840501 3840506 TTGCAC 20 3840475 3840480 TAGTAA 3840469 1.934 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgtTTGCACtgaagattattctggtggatTAGTAActggcGagggt 3839973 3840425 R yicN yicNp2 Sigma70 3840639 3840644 TTACCA 16 3840617 3840622 TACTTT 3840612 2.833 poor homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttaTTACCAcggtgatgatgcccttTACTTTctcgAtcacc 3839973 3840425 R yicN yicNp3 Sigma70 3840476 3840481 TTAGTA 19 3840451 3840456 TATCAT 3840444 3.01 poor homology 0.000271921 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggaTTAGTAactggcgagggtttccagaTATCATgagttcTgatta 3840478 3841812 R yicO yicOp2 Sigma70 3841944 3841949 TTATCA 19 3841919 3841924 TATTAA 3841913 2.25 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attatTTATCAtaaagaaacgtcgcgagatTATTAAagaatAtccat 3840478 3841812 R yicO yicOp3 Sigma70 3841904 3841909 ATTAAT 15 3841883 3841888 GATAAT 3841878 2.61 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tatccATTAATgtgcaattgaaaTGtGATAATtatcActgaa 3840478 3841812 R yicO yicOp4 Sigma70 3841977 3841982 TTCTCA 18 3841953 3841958 GATTAT 3841947 2.788 poor homology 0.000717312 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTCTCAttttgattttatcaatttGATTATtatttAtcata 3840478 3841812 R yicO yicOp7 Sigma70 3841965 3841970 TTTTAT 16 3841943 3841948 TATCAT 3841937 3.183 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttgaTTTTATcaatttgattattattTATCATaaagaAacgtc 3840478 3841812 R yicO yicOp9 Sigma70 3841945 3841950 TTTATC 17 3841922 3841927 GATTAT 3841916 3.306 good homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTTATCataaagaaacgtcgcgaGATTATtaaagAatatc 3840478 3841812 R yicO yicOp10 Sigma70 3841977 3841982 TTCTCA 21 3841950 3841955 TATTAT 3841944 3.643 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatttTTCTCAttttgattttatcaatttgatTATTATttatcAtaaag 3841987 3843753 F ade adep1 Sigma70 3841919 3841924 TTAATA 20 3841945 3841950 GATAAA 3841956 1.974 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTAATAatctcgcgacgtttctttatGATAAAtaataAtcaaa 3841987 3843753 F ade adep2 Sigma70 3841898 3841903 TTGCAC 16 3841920 3841925 TAATAA 3841930 2.883 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcaaTTGCACattaatggatattcttTAATAAtctcGcgacg 3841987 3843753 F ade adep5 Sigma70 3841898 3841903 TTGCAC 19 3841923 3841928 TAATCT 3841933 4 good homology 5.95E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcaaTTGCACattaatggatattctttaaTAATCTcgcgAcgttt 3841987 3843753 F ade adep6 Sigma70 3841892 3841897 TTTCAA 15 3841913 3841918 TATTCT 3841924 4.43 high homology 3.75E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaTTTCAAttgcacattaatggaTATTCTttaatAatctc 3841987 3843753 F ade adep7 Sigma70 3841918 3841923 TTTAAT 18 3841942 3841947 TATGAT 3841953 4.688 high homology 4.03E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattcTTTAATaatctcgcgacgtttcttTATGATaaataAtaatc 3845328 3846647 R uhpC uhpCp1 Sigma70 3846676 3846681 TTCTCT 16 3846654 3846659 TAAGGT 3846648 2.313 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgtTTCTCTacctcaacgctatgtcTAAGGTttgatGatgtt 3853137 3853634 R yidF yidFp1 Sigma70 3853746 3853751 TTCCCA 18 3853722 3853727 CAAATT 3853717 2.098 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatttTTCCCAatttcacgtagtccgTGaCAAATTtttgAtctcc 3853137 3853634 R yidF yidFp2 Sigma70 3853773 3853778 TTTAAT 16 3853751 3853756 GATTTT 3853745 2.543 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcaaTTTAATggatgtcacgaatagcGATTTTtcccaAtttca 3853137 3853634 R yidF yidFp3 Sigma70 3853828 3853833 TTGGCA 19 3853803 3853808 GATCCT 3853797 2.91 poor homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgaTTGGCAttctcgccatcgtggcgctGATCCTctggcActaca 3853137 3853634 R yidF yidFp4 Sigma70 3853678 3853683 TTGCTG 19 3853653 3853658 TATCGT 3853648 3.28 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgtTTGCTGtaacgcatatacatcaactTATCGTatttAttgag 3854438 3854887 F yidI yidIp1 Sigma70 3854385 3854390 TTTCGT 15 3854406 3854411 TATGCT 3854418 2.91 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aagaaTTTCGTccgcccgtttccTGaTATGCTtttgccAtccgc 3854934 3856427 R yidJ yidJp1 Sigma70 3856516 3856521 TTGCCG 19 3856491 3856496 GATTTT 3856485 2.55 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTGCCGccgtagtgattgtctacctGATTTTtgacaGctggc 3858306 3859199 F yidL yidLp1 Sigma70 3858256 3858261 TTTTCT 19 3858281 3858286 CATAAT 3858292 2.12 poor homology 0.000867409 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattgTTTTCTgttaagttcaggttgtgagCATAATtcgccGgaggg 3858306 3859199 F yidL yidLp2 Sigma70 3858125 3858130 TTGTAA 20 3858151 3858156 TATTTA 3858162 2.404 poor homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagatTTGTAAcgaattcatctcatagccctTATTTAtgtttAtgtcc 3858306 3859199 F yidL yidLp3 Sigma70 3858153 3858158 TTTATG 18 3858177 3858182 GAATAT 3858188 2.568 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccttaTTTATGtttatgtcccggacgcatGAATATagggaGaggta 3858306 3859199 F yidL yidLp4 Sigma70 3858196 3858201 ATGCGT 21 3858223 3858228 TAAAAT 3858233 3.063 poor homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaaaATGCGTcgggtcaggcagtcagattctTAAAATacaaAcgtcg 3861922 3862638 F yidP yidPp1 Sigma70 3861749 3861754 TTTCAT 16 3861771 3861776 TAGAGA 3861782 1.963 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgcTTTCATgcttttcgttgggcggTAGAGAtctacGttttc 3862635 3864296 R yidE yidEp1 Sigma70 3864426 3864431 ATGCGT 15 3864405 3864410 TAAGAT 3864399 2.38 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacaATGCGTtaaatttcgactgttTAAGATatttcGgcacg 3862635 3864296 R yidE yidEp3 Sigma70 3864341 3864346 TTCAGC 16 3864319 3864324 TAAAAT 3864314 2.863 poor homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgaTTCAGCcataatccgtagcaatTAAAATgttaTctcaa 3862635 3864296 R yidE yidEp6 Sigma70 3864445 3864450 TTGTCT 19 3864420 3864425 TAAATT 3864413 4.02 high homology 6.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGTCTtacttactcaacaatgcgtTAAATTtcgactGtttaa 3866085 3867332 R yidR yidRp1 Sigma70 3867381 3867386 TTCATC 15 3867360 3867365 TATTGT 3867354 2.96 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaTTCATCacgatggcaaaagacTATTGTctgaaAgtgaa 3866085 3867332 R yidR yidRp2 Sigma70 3867468 3867473 TTGCCT 21 3867441 3867446 GATCCT 3867435 3.283 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTGCCTgctaactttcgtgccaacgccGATCCTgccggGccgag 3867400 3868464 F cbrA cbrAp1 Sigma70 3867309 3867314 CTGATA 18 3867333 3867338 CATACT 3867344 2.568 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggtcCTGATAcaaaacgggtcccgccatCATACTtcacaAggact 3867400 3868464 F cbrA cbrAp2 Sigma70 3867338 3867343 TTCACA 20 3867364 3867369 TAGTCT 3867376 3.044 poor homology 0.000176887 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catacTTCACAaggacttcactttcagacaaTAGTCTtttgccAtcgtg 3867400 3868464 F cbrA cbrAp5 Sigma70 3867338 3867343 TTCACA 15 3867359 3867364 GACAAT 3867370 3.34 good homology 0.000203468 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catacTTCACAaggacttcactttcaGACAATagtctTttgcc 3868461 3869753 R dgoT dgoTp1 Sigma70 3869827 3869832 ATACAA 15 3869806 3869811 TAAATT 3869800 2.56 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagcaATACAAaaatataaccctctgTAAATTacaggGcatgg 3873461 3874117 F yidX yidXp1 Sigma70 3873324 3873329 TTTAGA 19 3873349 3873354 TAAAAA 3873359 2.51 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacaaTTTAGAtcacaaaaagaacaatgcaTAAAAAaatgAcatgc 3873461 3874117 F yidX yidXp2 Sigma70 3873265 3873270 ATGACG 19 3873290 3873295 TAATGT 3873301 2.56 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtgATGACGttcgcgtttgccgtgcgtgTAATGTagtacAaactt 3873461 3874117 F yidX yidXp3 Sigma70 3873292 3873297 ATGTAG 21 3873319 3873324 TACAAT 3873329 2.623 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgtaATGTAGtacaaacttatattgttgtacTACAATttagAtcaca 3873461 3874117 F yidX yidXp4 Sigma70 3873278 3873283 TTGCCG 16 3873300 3873305 CAAACT 3873312 2.723 poor homology 0.000277414 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgtTTGCCGtgcgtgtaatgtagtaCAAACTtatattGttgta 3873461 3874117 F yidX yidXp5 Sigma70 3873378 3873383 CTGAAA 15 3873399 3873404 TAAACA 3873410 2.94 poor homology 0.000382034 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaatCTGAAAagggatatcaggcgcTAAACAggaggGaaaga 3874163 3874975 R yidA yidAp1 Sigma70 3875108 3875113 CTGAAA 15 3875087 3875092 TAAGCA 3875081 2.12 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactgCTGAAAgggaaactcttccgcTAAGCAaaaagGgagca 3874163 3874975 R yidA yidAp3 Sigma70 3875211 3875216 TTTACT 21 3875184 3875189 TATTGA 3875179 2.553 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccagTTTACTggcagaacaattgccgaagatTATTGAtgcgCtctca 3874163 3874975 R yidA yidAp4 Sigma70 3875211 3875216 TTTACT 15 3875190 3875195 GAAGAT 3875184 2.86 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccagTTTACTggcagaacaattgccGAAGATtattgAtgcgc 3874163 3874975 R yidA yidAp6 Sigma70 3875029 3875034 CTGATT 17 3875006 3875011 TAGCAT 3875000 3.166 good homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtaCTGATTtttgagcggaatcgcgtTAGCATgggtcAggaac 3874163 3874975 R yidA yidAp8 Sigma70 3875211 3875216 TTTACT 18 3875187 3875192 GATTAT 3875182 3.638 good homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccagTTTACTggcagaacaattgccgaaGATTATtgatGcgctc 3875090 3875488 R yidB yidBp1 Sigma70 3875699 3875704 CTGATG 21 3875672 3875677 GAAAAT 3875666 2.103 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgcCTGATGcgctacgcttatcaggcctacGAAAATcttgcAatgta 3875090 3875488 R yidB yidBp3 Sigma70 3875665 3875670 TTGCAA 16 3875643 3875648 GATTTT 3875638 3.463 good homology 3.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaatcTTGCAAtgtattgaattttcatGATTTTgtagGccgga 3875090 3875488 R yidB yidBp4 Sigma70 3875563 3875568 TTTATT 15 3875542 3875547 TATCAT 3875536 3.91 good homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccttTTTATTtctgcaatccgcaatTATCATcccgcAaatct 3884851 3886215 F mnmE mnmEp1 Sigma70 3884623 3884628 TTCCCG 20 3884649 3884654 TATCGT 3884660 2.064 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggTTCCCGtcaggtctggtgctgtactaTATCGTcagcaAcctgg 3884851 3886215 F mnmE mnmEp2 Sigma70 3884623 3884628 TTCCCG 15 3884644 3884649 TACTAT 3884656 2.97 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtggTTCCCGtcaggtctggtgctgTACTATatcgtcAgcaac 3889638 3890813 F mdtL mdtLp1 Sigma70 3889590 3889595 TTCACC 20 3889616 3889621 TACTAT 3889626 2.604 poor homology 0.000363402 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctccTTCACCacgtatgctttgcgtcacctTACTATcaggAcgctt 3889638 3890813 F mdtL mdtLp2 Sigma70 3889430 3889435 TTGTCA 19 3889455 3889460 GATTTT 3889466 2.73 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgaTTGTCAttctctttggtataaccgtGATTTTgtgctGgttcg 3893295 3894632 R purP purPp1 Sigma70 3894853 3894858 ATGACT 16 3894831 3894836 TACCGT 3894826 2.323 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaATGACTtcactgtcgaccagcgTACCGTcgcaGtcgaa 3893295 3894632 R purP purPp2 Sigma70 3894713 3894718 ATAAAA 20 3894687 3894692 TATTGT 3894682 2.334 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccaATAAAAaagtctctcacaaacgcgccTATTGTcgcaTtttgg 3893295 3894632 R purP purPp4 Sigma70 3894793 3894798 ATGCCT 17 3894770 3894775 TAACGT 3894765 3.386 good homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggacATGCCTttcctttttaatcagttTAACGTtttcGtagag 3893295 3894632 R purP purPp5 Sigma70 3894733 3894738 TTGCCG 15 3894712 3894717 TAAAAA 3894706 3.67 good homology 0.000135032 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcgTTGCCGtataagtaaatccaaTAAAAAagtctCtcaca 3894797 3895462 F yieH yieHp1 Sigma70 3894742 3894747 TTGCGT 15 3894763 3894768 TACGAA 3894775 2.09 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacgaTTGCGTtgcgcaaatcggctcTACGAAaacgttAaactg 3894797 3895462 F yieH yieHp5 Sigma70 3894632 3894637 TTATCT 17 3894655 3894660 GAAAAT 3894666 3.546 good homology 0.000629868 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcaTTATCTatttccgaacaaggaggGAAAATccgtcGctatc 3894797 3895462 F yieH yieHp6 Sigma70 3894747 3894752 TTGCGC 21 3894774 3894779 TAAACT 3894785 3.583 good homology 7.79E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcgTTGCGCaaatcggctctacgaaaacgtTAAACTgattaAaaagg 3895529 3895996 F cbrB cbrBp1 Sigma70 3895290 3895295 TTGATG 15 3895311 3895316 CACAAT 3895322 2.8 poor homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTGATGactcagttgccggtgCACAATctggtAtcgac 3895529 3895996 F cbrB cbrBp2 Sigma70 3895290 3895295 TTGATG 17 3895313 3895318 CAATCT 3895325 3.236 good homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctggTTGATGactcagttgccggtgcaCAATCTggtatcGacgca 3895529 3895996 F cbrB cbrBp3 Sigma70 3895466 3895471 TTCACA 20 3895492 3895497 TAAATT 3895502 3.644 good homology 7.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttcTTCACActcccttcacttaccccgctTAAATTggcgCtcaaa 3896694 3897416 R yieK yieKp1 Sigma70 3897484 3897489 ATGAAA 20 3897458 3897463 TATGCA 3897451 2.144 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaccATGAAAtggatgtctggcgaccagccTATGCAgcctttGtacag 3896694 3897416 R yieK yieKp3 Sigma70 3897449 3897454 TTTGTA 15 3897428 3897433 TAAAAT 3897422 4.11 high homology 4.92E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagccTTTGTAcagaaattatttaaaTAAAATaaggcAttaag 3900312 3901724 R bglB bglBp1 Sigma70 3901850 3901855 TTGATC 15 3901829 3901834 TAATCA 3901823 2.82 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggatTTGATCtgacgacgccggtatTAATCAgtaatAgcgat 3904876 3905601 R phoU phoUp2 Sigma70 3905697 3905702 TTGATT 15 3905676 3905681 GACGAT 3905669 3.29 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgaaTTGATTgagttcagcaacacgGACGATctgttcAccaag 3913576 3913995 R atpC atpCp1 Sigma70 3914112 3914117 TTTAAA 18 3914088 3914093 TACGAT 3914082 4.238 high homology 7.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggcTTTAAAggcatcatggaaggcgaaTACGATcacctGccgga 3921767 3923656 R mnmG mnmGp1 Sigma70 3923851 3923856 TTGATC 19 3923826 3923831 TATCCA 3923821 2.38 poor homology 0.000397625 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggttgTTGATCttaaaagccggatcctTGtTATCCAcaggGcagtg 3921767 3923656 R mnmG mnmGp2 Sigma70 3923862 3923867 TTTCCA 21 3923835 3923840 GATCCT 3923830 2.473 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatccTTTCCAggttgttgatcttaaaagccgGATCCTtgttAtccac 3921767 3923656 R mnmG mnmGp3 Sigma70 3923830 3923835 TTGTTA 20 3923804 3923809 TAATAA 3923797 2.594 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatccTTGTTAtccacagggcagtgcgatccTAATAAgagatcAcaata 3921767 3923656 R mnmG mnmGp5 Sigma70 3923830 3923835 TTGTTA 15 3923809 3923814 GATCCT 3923803 2.82 poor homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatccTTGTTAtccacagggcagTGcGATCCTaataaGagatc 3921767 3923656 R mnmG mnmGp6 Sigma70 3923732 3923737 TTCTCA 16 3923710 3923715 TAGAAT 3923704 3.253 good homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtctTTCTCAagccgacaaagttgagTAGAATccacgGcccgg 3937208 3938635 R hsrA hsrAp2 Sigma70 3938745 3938750 CTGCAT 17 3938722 3938727 GATTAT 3938716 3.386 good homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tggatCTGCATcaggcgattgtcgaTGcGATTATccaaaGcgatg 3937208 3938635 R hsrA hsrAp4 Sigma70 3938694 3938699 TTTAAA 16 3938672 3938677 TACGCT 3938666 3.643 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cggcaTTTAAAgcttgtcaggcgcTGcTACGCTcacctGataag 3944980 3945055 F trpT trpTp1 Sigma70 3944889 3944894 TTCGGT 20 3944915 3944920 TAGAAT 3944925 1.864 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaTTCGGTggagcggtagttcagtcggtTAGAATacctGcctgt 3945151 3945990 R hdfR hdfRp1 Sigma70 3946175 3946180 ATGACG 16 3946153 3946158 TAATGT 3946147 2.623 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccATGACGagagaatccacgtggaTAATGTttattGtcgaa 3945151 3945990 R hdfR hdfRp4 Sigma70 3946192 3946197 TTGATG 18 3946168 3946173 GAGAAT 3946163 3.508 good homology 0.000178665 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctctTTGATGgtgaaatcaccatgacgaGAGAATccacGtggat 3945151 3945990 R hdfR hdfRp5 Sigma70 3946084 3946089 TTGACC 17 3946061 3946066 GAGTAT 3946055 3.616 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGACCgagctagttatggcgcgGAGTATtagttAcgctt 3946109 3946447 F yifE yifEp1 Sigma70 3946017 3946022 TTATGA 16 3946039 3946044 TACACT 3946050 2.433 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtcgTTATGAtttaaatgttttgtttTACACTctgtcAagcgt 3946472 3947992 R yifB yifBp2 Sigma70 3948212 3948217 TTTAAA 15 3948191 3948196 GAAAAA 3948185 2.58 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTTAAAaataaaatagtgagtGAAAAAaattcAatttc 3946472 3947992 R yifB yifBp6 Sigma70 3948226 3948231 ATAAAT 16 3948204 3948209 TAAAAT 3948198 3.273 good homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatATAAATtgttgttttttaaaaaTAAAATagtgaGtgaaa 3946472 3947992 R yifB yifBp7 Sigma70 3948233 3948238 TTTCAA 17 3948210 3948215 TAAAAA 3948205 4.346 high homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTTCAAtataaattgttgtttttTAAAAAtaaaAtagtg 3946472 3947992 R yifB yifBp8 Sigma70 3948083 3948088 TTGCAC 21 3948056 3948061 TAAAAT 3948050 4.853 high homology 1.29E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcacTTGCACaaataaacaggaatcagccacTAAAATtcacgAattag 3960768 3962252 R gpp gppp1 Sigma70 3962330 3962335 ATGAAT 16 3962308 3962313 TAGTAA 3962303 1.813 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagaATGAATcccgatgagcttactgTAGTAAgtgaTtcagg 3960768 3962252 R gpp gppp2 Sigma70 3962386 3962391 TTAAAT 15 3962365 3962370 CAAAAT 3962359 2.92 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaggTTAAATaaaaaatgtcatactCAAAATcattcAaactg 3960768 3962252 R gpp gppp3 Sigma70 3962357 3962362 TTCAAA 17 3962334 3962339 GAGAAT 3962327 3.996 good homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTCAAActgtatcaagatggcaaGAGAATgaatccCgatga 3962388 3963653 R rhlB rhlBp1 Sigma70 3963748 3963753 TTGGTT 18 3963724 3963729 TAACCA 3963718 2.498 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtgTTGGTTtcgttgttggtgtaacatTAACCAactaaAggttg 3962388 3963653 R rhlB rhlBp2 Sigma70 3963685 3963690 TTCGTA 17 3963662 3963667 TATTCT 3963656 4.296 high homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acgctTTCGTAaagcaatagtaagcTGaTATTCTaccacActatg 3978910 3980295 F yifK yifKp2 Sigma70 3978805 3978810 TTTATT 17 3978828 3978833 TACGAA 3978838 2.956 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatgcTTTATTtgccatttctcctgaatTACGAAaacaTttgca 3978910 3980295 F yifK yifKp4 Sigma70 3978689 3978694 TTTACG 20 3978715 3978720 TATGAT 3978726 3.334 good homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaTTTACGctggcactacaccggcaaccTATGATtttccTctctt 3982375 3984030 R aslA aslAp1 Sigma70 3984135 3984140 TTTATT 19 3984110 3984115 TAATCA 3984105 2.3 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTTATTtttgtcactattatttatgTAATCAtcctGtcagg 3982375 3984030 R aslA aslAp2 Sigma70 3984166 3984171 TTTCCA 18 3984142 3984147 TAAATA 3984137 2.858 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgatTTTCCAattcattttctggataaaTAAATAatttAttttt 3982375 3984030 R aslA aslAp3 Sigma70 3984159 3984164 TTCATT 20 3984133 3984138 TATTTT 3984128 2.954 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccaaTTCATTttctggataaataaataattTATTTTtgtcActatt 3982375 3984030 R aslA aslAp4 Sigma70 3984143 3984148 ATAAAT 16 3984121 3984126 TATTAT 3984116 3.003 poor homology 0.000184106 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gataaATAAATaatttatttttgtcacTATTATttatGtaatc 3982375 3984030 R aslA aslAp5 Sigma70 3984165 3984170 TTCCAA 21 3984138 3984143 TAATTT 3984131 3.233 good homology 0.000227127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTCCAAttcattttctggataaataaaTAATTTatttttGtcact 3982375 3984030 R aslA aslAp7 Sigma70 3984213 3984218 TTACAT 17 3984190 3984195 TAGGAT 3984184 3.986 good homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgccTTACATatcaactgcgccagaggTAGGATtgaaaAcgctc 3991762 3992082 R cyaY cyaYp1 Sigma70 3992120 3992125 ATGCCG 19 3992095 3992100 TAAAAA 3992090 1.99 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accccATGCCGctatactgccgccatcactTAAAAAcaggAtacaa 3991762 3992082 R cyaY cyaYp2 Sigma70 3992324 3992329 TTGTCT 19 3992299 3992304 GAGGAT 3992294 2.14 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttgTTGTCTtttttagttccgtcagcgtGAGGATgctcGctcgg 3991762 3992082 R cyaY cyaYp5 Sigma70 3992136 3992141 TTGAAG 17 3992113 3992118 TATACT 3992106 6.356 high homology 2.71E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaactTTGAAGccctgaccccatgccgcTATACTgccgccAtcact 3998315 3999079 R yigE yigEp1 Sigma70 3999130 3999135 TTGGTA 20 3999104 3999109 GATAAA 3999099 2.314 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctttTTGGTActcgtcaaggtcgctaacagGATAAAaaaaTcccac 4000442 4000822 R yigF yigFp4 Sigma70 4000928 4000933 TTGCCT 19 4000903 4000908 GATTTT 4000898 3.11 poor homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agattTTGCCTgttcaggcaatggttcgatGATTTTtttgAtttgt 4000442 4000822 R yigF yigFp5 Sigma70 4000896 4000901 TTGATT 20 4000870 4000875 TATGCT 4000865 4.474 high homology 1.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGATTtgttatttttccactttcagTATGCTaatgCttgca 4001311 4002201 R rarD rarDp1 Sigma70 4002282 4002287 TTGCCA 21 4002255 4002260 TAGGTT 4002250 3.443 good homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttataTTGCCAgtgccaccgccacctataTGgTAGGTTgaagAcataa 4001311 4002201 R rarD rarDp2 Sigma70 4002282 4002287 TTGCCA 16 4002260 4002265 TATGGT 4002254 4.573 high homology 1.96E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTGCCAgtgccaccgccacctaTATGGTaggttGaagac 4001311 4002201 R rarD rarDp3 Sigma70 4002312 4002317 TTGAAT 20 4002286 4002291 TATATT 4002281 5.014 high homology 2.87E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcgTTGAATtacacaatgaagaacagcttTATATTgccaGtgcca 4003887 4005716 F recQ recQp2 Sigma70 4003823 4003828 TTGCAG 17 4003846 4003851 GAAAAT 4003856 4.766 high homology 8.36E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcaTTGCAGtttctcgcgcaggcgctGAAAATagcgCctgtt 4005780 4006400 F rhtC rhtCp1 Sigma70 4005703 4005708 ATGACG 17 4005726 4005731 TAAAAA 4005738 3.346 good homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggcgATGACGaagagtagtcagcagcaTAAAAAagtgccAgtatg 4006462 4007082 R rhtB rhtBp1 Sigma70 4007205 4007210 TTTTTG 16 4007183 4007188 TAATCT 4007176 2.323 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtcTTTTTGctgctgaaacatcgggTAATCTgcctctTaaacc 4006462 4007082 R rhtB rhtBp2 Sigma70 4007139 4007144 CTGACA 19 4007114 4007119 TATTGT 4007108 3.39 good homology 0.000171659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgcCTGACAcaacgctgcgacagtagcgTATTGTggcacAaaaat 4007193 4008215 F pldB pldBp1 Sigma70 4007081 4007086 ATGATG 15 4007102 4007107 TATTTT 4007114 2.62 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtcATGATGaactcccggtgtgtcTATTTTtgtgccAcaata 4007193 4008215 F pldB pldBp4 Sigma70 4007010 4007015 TTGCAC 19 4007035 4007040 TAAAAT 4007046 4.76 high homology 1.29E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttgaTTGCACcagagcctggcgacaggctTAAAATgatcgAtgtca 4009099 4009998 F yigM yigMp2 Sigma70 4009030 4009035 TTTATT 17 4009053 4009058 GATACT 4009064 4.376 high homology 0.000199439 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttcTTTATTtggtcagttgtcaacctGATACTtcgctAcaatg 4015356 4016783 F rmuC rmuCp1 Sigma70 4015230 4015235 CTGAAG 21 4015257 4015262 TATTTT 4015268 2.583 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgtCTGAAGgccgacgcgttcggccttttgTATTTTtgcgtAgcgcc 4015356 4016783 F rmuC rmuCp2 Sigma70 4015153 4015158 ATGAAA 20 4015179 4015184 GAAAAT 4015189 3.044 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacgATGAAAcaaaccgaaagccatgcggtGAAAATcgtgGtggaa 4015356 4016783 F rmuC rmuCp3 Sigma70 4015288 4015293 TTTCCA 17 4015311 4015316 CACAAT 4015321 3.316 good homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgccTTTCCAactggacgtttgtacagCACAATtctaTtttgt 4016878 4017633 F ubiE ubiEp2 Sigma70 4016737 4016742 ATGAAG 20 4016763 4016768 TATAAT 4016774 3.794 good homology 2.06E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatgATGAAGcttatcaacgcgatgatgaaTATAATcagcaGtcgcg 4019968 4020237 F tatA tatAp1 Sigma70 4019901 4019906 CTCAAG 15 4019922 4019927 TATAAT 4019932 2.88 poor homology 6.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcgCTCAAGgcgggccgtgtaacgTATAATgcggCtttgt 4019968 4020237 F tatA tatAp2 Sigma70 4019893 4019898 TTTCAT 18 4019917 4019922 TAACGT 4019928 3.308 good homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTTCATcgctcaaggcgggccgtgTAACGTataatGcggct 4019968 4020237 F tatA tatAp3 Sigma70 4019751 4019756 TTTTCT 17 4019774 4019779 TAGTAT 4019785 3.676 good homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgttaTTTTCTcggaattggcgctacgtTAGTATtaagtGgcaca 4022356 4022844 R rfaH rfaHp1 Sigma70 4022965 4022970 TTGCGA 19 4022940 4022945 TAGCGT 4022933 2.37 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctTTGCGAtgctgtaaatttgttaaatTAGCGTgaactcTgacgg 4022356 4022844 R rfaH rfaHp2 Sigma70 4022949 4022954 TTGTTA 21 4022922 4022927 TATAAC 4022917 2.473 poor homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaatTTGTTAaattagcgtgaactctgacggTATAACgcaaAccggg 4022356 4022844 R rfaH rfaHp3 Sigma70 4022972 4022977 TTCATC 21 4022945 4022950 TAAATT 4022939 2.853 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cggcgTTCATCtttgcgatgctgtaaattTGtTAAATTagcgtGaactc 4022356 4022844 R rfaH rfaHp4 Sigma70 4022929 4022934 CTGACG 20 4022903 4022908 TATAAT 4022896 3.494 good homology 2.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaactCTGACGgtataacgcaaaccggggaaTATAATtaacttAgcgta 4022356 4022844 R rfaH rfaHp5 Sigma70 4023020 4023025 TTTCAT 19 4022995 4023000 TAATCT 4022988 3.71 good homology 9.81E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttataTTTCATggcgtccattgtagcctctTAATCTgcgcccAttata 4022356 4022844 R rfaH rfaHp8 Sigma70 4022898 4022903 TTAACT 17 4022875 4022880 TATCCT 4022870 4.666 high homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tataaTTAACTtagcgtaaagctttTGcTATCCTtgcgCcccga 4023011 4024504 F ubiD ubiDp1 Sigma70 4022878 4022883 ATAGCA 21 4022905 4022910 TATATT 4022916 2.153 poor homology 0.000443861 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaggATAGCAaaagctttacgctaagttaatTATATTccccgGtttgc 4023011 4024504 F ubiD ubiDp2 Sigma70 4022900 4022905 TTAATT 18 4022924 4022929 TATACC 4022935 2.198 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaagTTAATTatattccccggtttgcgtTATACCgtcagAgttca 4023011 4024504 F ubiD ubiDp4 Sigma70 4022918 4022923 TTGCGT 20 4022944 4022949 TAATTT 4022955 2.814 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggtTTGCGTtataccgtcagagttcacgcTAATTTaacaaAtttac 4023011 4024504 F ubiD ubiDp6 Sigma70 4022800 4022805 TTGAAG 21 4022827 4022832 TAAATA 4022838 3.123 poor homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgTTGAAGttgcccgcgcttgcagtacagTAAATAccaggAttgca 4023011 4024504 F ubiD ubiDp8 Sigma70 4022800 4022805 TTGAAG 16 4022822 4022827 TACAGT 4022832 4.363 high homology 2.62E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgTTGAAGttgcccgcgcttgcagTACAGTaaatAccagg 4023011 4024504 F ubiD ubiDp9 Sigma70 4022956 4022961 TTTACA 21 4022983 4022988 TATAAT 4022993 5.253 high homology 3.80E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaaaTTTACAgcatcgcaaagatgaacgccgTATAATgggcGcagat 4025632 4026795 R fadA fadAp1 Sigma70 4026876 4026881 ATAAAG 17 4026853 4026858 TACTAT 4026847 2.806 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaATAAAGcgcgtcataacgaaccgTACTATcctccGgttga 4038929 4039456 R mobB mobBp1 Sigma70 4039508 4039513 TTTCAG 21 4039481 4039486 TAACGT 4039476 2.383 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttgaTTTCAGcgatcataaagatgcattTGtTAACGTgaatAcgcca 4042222 4043652 F yihF yihFp2 Sigma70 4042008 4042013 ATGGAT 15 4042029 4042034 TATGCT 4042040 3.05 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaatATGGATgtttttgttcagcagTATGCTgatacAgtgaa 4042222 4043652 F yihF yihFp3 Sigma70 4042110 4042115 TTTTTA 18 4042134 4042139 TACATT 4042145 3.088 poor homology 0.000510561 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcttTTTTTAttatttaataaatataaaTACATTctgatAatgca 4042222 4043652 F yihF yihFp6 Sigma70 4042119 4042124 TTTAAT 17 4042142 4042147 GATAAT 4042154 4.896 high homology 8.87E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaTTTAATaaatataaatacattctGATAATgcatccTgccgc 4048156 4048788 R yihA yihAp1 Sigma70 4048961 4048966 TTTATA 21 4048934 4048939 CAGAAT 4048927 2.143 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaTTTATAtagcttatttgacatgcatcgCAGAATtttctcTgctat 4048156 4048788 R yihA yihAp2 Sigma70 4048873 4048878 TTTACT 15 4048852 4048857 GAAAAA 4048847 2.29 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggctTTTACTtacaacgctcacgccGAAAAAtccgCctttt 4048156 4048788 R yihA yihAp3 Sigma70 4048984 4048989 TTTATA 19 4048959 4048964 TATATA 4048954 2.76 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagtTTTATAtaaaagcaattcactgattTATATAgcttAtttga 4048156 4048788 R yihA yihAp7 Sigma70 4049002 4049007 TTTGCA 16 4048980 4048985 TATAAA 4048975 3.073 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagtaTTTGCAcattttcagagttttaTATAAAagcaAttcac 4051892 4053301 R glnG glnGp1 Sigma70 4053395 4053400 TTTGAT 15 4053374 4053379 CAAAAT 4053369 2.25 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtaaTTTGATtgatcagcattcaggCAAAATtgaaTttacc 4051892 4053301 R glnG glnGp2 Sigma70 4053473 4053478 TTTGCA 18 4053449 4053454 GATGGT 4053443 2.268 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctcaTTTGCAggatacgctgttttacccGATGGTcagcgGccgcg 4051892 4053301 R glnG glnGp3 Sigma70 4053394 4053399 TTGATT 21 4053367 4053372 GAATTT 4053362 2.983 poor homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTGATTgatcagcattcaggcaaaattGAATTTaccaGttggc 4056430 4058253 F typA typAp2 Sigma70 4056274 4056279 GTGCAA 21 4056301 4056306 TATGCT 4056312 2.533 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttgGTGCAAtgacctttggataacccttttTATGCTccgtgAaagcg 4056430 4058253 F typA typAp6 Sigma70 4056371 4056376 TTGTAG 15 4056392 4056397 TACAAT 4056403 4.21 high homology 5.55E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgttTTGTAGtgcgattaatccgtgTACAATaacgcGctatt 4058470 4059180 F yihL yihLp3 Sigma70 4058407 4058412 TTGCTT 21 4058434 4058439 GATGCT 4058446 3.303 good homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaTTGCTTtcttttttggcgtaagcgtaaGATGCTtcatctGgttta 4058470 4059180 F yihL yihLp4 Sigma70 4058407 4058412 TTGCTT 18 4058431 4058436 TAAGAT 4058442 4.798 high homology 2.75E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaTTGCTTtcttttttggcgtaagcgTAAGATgcttcAtctgg 4060270 4061535 F yihN yihNp1 Sigma70 4060208 4060213 ATGAAT 20 4060234 4060239 TAAAAC 4060244 1.364 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccatATGAATggtcggtatcttattgccttTAAAACagtgAtttta 4060270 4061535 F yihN yihNp2 Sigma70 4060054 4060059 TTTACT 19 4060079 4060084 GAAAAA 4060089 2.06 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTTACTggatgcgcggttacgtaaaGAAAAAgaagAtgcaa 4060270 4061535 F yihN yihNp3 Sigma70 4060095 4060100 TTAATC 16 4060117 4060122 TAACGT 4060128 2.073 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcaaTTAATCagataaatcatgtgcgTAACGTactacAacaaa 4060270 4061535 F yihN yihNp4 Sigma70 4060054 4060059 TTTACT 15 4060075 4060080 TAAAGA 4060086 2.96 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatcaTTTACTggatgcgcggttacgTAAAGAaaaagAagatg 4061626 4062318 R ompL ompLp2 Sigma70 4062451 4062456 TTGAGG 19 4062426 4062431 TAAAGA 4062421 2.21 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattaTTGAGGaaatcaaccaacgcaaaaaTAAAGAgatgGcgaca 4061626 4062318 R ompL ompLp3 Sigma70 4062475 4062480 ATGAAA 16 4062453 4062458 TATTGA 4062448 2.373 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcaATGAAAaacggtttgcattgatTATTGAggaaAtcaac 4061626 4062318 R ompL ompLp4 Sigma70 4062511 4062516 TTGCTG 20 4062485 4062490 TACACA 4062480 2.404 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTGCTGcattgacgatgggattctttTACACActcaAtgaaa 4061626 4062318 R ompL ompLp5 Sigma70 4062363 4062368 TTCCAT 21 4062336 4062341 TACGTT 4062330 2.413 poor homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTCCATcctggtgggtggcggcctcccTACGTTtaaaaAatgga 4062386 4063789 R yihO yihOp1 Sigma70 4063902 4063907 TTGCTT 15 4063881 4063886 GAAGAT 4063876 3.35 good homology 0.000116223 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgggTTGCTTctacagcctgaacgaGAAGATgtatGtccgc 4065263 4067299 R yihQ yihQp2 Sigma70 4067456 4067461 TTTCAC 20 4067430 4067435 TATCTT 4067423 1.934 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaacaTTTCACtcgctaaaggcaacattatgTATCTTcaatttAttaag 4065263 4067299 R yihQ yihQp3 Sigma70 4067433 4067438 ATGTAT 16 4067411 4067416 TAAAAA 4067404 2.123 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acattATGTATcttcaatttattaagtTAAAAAcagctcAgcttc 4065263 4067299 R yihQ yihQp4 Sigma70 4067512 4067517 TTTACG 18 4067488 4067493 TATTGA 4067482 2.368 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taataTTTACGgacagagaaaataacttgTATTGAttagcAgtcaa 4065263 4067299 R yihQ yihQp6 Sigma70 4067486 4067491 TTGATT 19 4067461 4067466 GAACAT 4067456 3.18 good homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtaTTGATTagcagtcaaaatcattgaaGAACATttcaCtcgct 4065263 4067299 R yihQ yihQp7 Sigma70 4067519 4067524 TTTAAT 18 4067495 4067500 TAACTT 4067489 3.368 good homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTTAATatttacggacagagaaaaTAACTTgtattGattag 4065263 4067299 R yihQ yihQp8 Sigma70 4067412 4067417 TTAAAA 15 4067391 4067396 TAAAGT 4067386 4.53 high homology 3.57E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaagTTAAAAacagctcagcttctgTAAAGTttttAtatat 4067498 4068424 R yihR yihRp1 Sigma70 4068546 4068551 TTAATG 15 4068525 4068530 GAAAAT 4068519 2.8 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggataTTAATGcgaaataactgatctGAAAATagggtGcgggt 4071762 4072658 F yihV yihVp1 Sigma70 4071724 4071729 TTAAAA 20 4071750 4071755 TAAGGA 4071762 1.844 poor homology 0.000413853 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaTTAAAAtgaacgcatcccaaaatgttTAAGGAatgaccAtgatt 4071762 4072658 F yihV yihVp2 Sigma70 4071549 4071554 TTGGCG 19 4071574 4071579 GATAAA 4071584 2.04 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgccaTTGGCGaacccatttgtcctaaaccGATAAAcgcgAttgct 4071762 4072658 F yihV yihVp3 Sigma70 4071645 4071650 TTGCTT 21 4071672 4071677 TAATTT 4071684 3.903 good homology 5.71E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgctTTGCTTgtctgtttttgatcgtatttgTAATTTatcgtcAaaaaa 4071762 4072658 F yihV yihVp4 Sigma70 4071704 4071709 TTTTTA 15 4071725 4071730 TAAAAT 4071735 4.01 good homology 5.55E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcacTTTTTAaacaattggtgaaatTAAAATgaacGcatcc 4071762 4072658 F yihV yihVp5 Sigma70 4071585 4071590 TTGCTG 18 4071609 4071614 TACAGT 4071621 4.158 high homology 0.000105163 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcgaTTGCTGccataaccctctcctgaaTACAGTtatgtcActttt 4077320 4077532 F yiiE yiiEp1 Sigma70 4077246 4077251 TTTTTA 15 4077267 4077272 TAATTT 4077277 2.66 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcttTTTTTAaatgattttccggcgTAATTTtcgcAcatac 4077320 4077532 F yiiE yiiEp2 Sigma70 4077253 4077258 ATGATT 21 4077280 4077285 TACATT 4077291 2.943 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttaaATGATTttccggcgtaattttcgcacaTACATTaatgaGtaata 4077320 4077532 F yiiE yiiEp5 Sigma70 4077171 4077176 ATGAAA 15 4077192 4077197 TATTAT 4077203 4.48 high homology 3.72E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaATGAAAcaactgcaacactctTATTATttctgGaaaac 4077320 4077532 F yiiE yiiEp6 Sigma70 4077086 4077091 ATGCAA 17 4077109 4077114 TAATAT 4077119 4.736 high homology 0.00010622 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agattATGCAAataaatatctctgaataTAATATattcAtagca 4077320 4077532 F yiiE yiiEp7 Sigma70 4077086 4077091 ATGCAA 15 4077107 4077112 TATAAT 4077119 4.75 high homology 1.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agattATGCAAataaatatctctgaaTATAATatattcAtagca 4077774 4077992 F yiiF yiiFp1 Sigma70 4077638 4077643 CTGGAA 15 4077659 4077664 TAAAAA 4077670 2.38 poor homology 0.000858778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatCTGGAAaacgcctcgcaaaaaTAAAAAatgatGcgtaa 4077774 4077992 F yiiF yiiFp2 Sigma70 4077708 4077713 TTTTCT 18 4077732 4077737 GATATT 4077743 2.538 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtacTTTTCTctccatagattcaaaaatGATATTggcgaGatatt 4077774 4077992 F yiiF yiiFp3 Sigma70 4077723 4077728 TTCAAA 20 4077749 4077754 TATGAA 4077761 2.614 poor homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atagaTTCAAAaatgatattggcgagatattTATGAActctctGgcagg 4077774 4077992 F yiiF yiiFp4 Sigma70 4077529 4077534 ATGACA 16 4077551 4077556 GAATAT 4077562 2.713 poor homology 0.000418012 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaggaATGACAaaaatttttcattcttGAATATaaaaaAcagat 4077774 4077992 F yiiF yiiFp5 Sigma70 4077529 4077534 ATGACA 19 4077554 4077559 TATAAA 4077565 3.33 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaggaATGACAaaaatttttcattcttgaaTATAAAaaacaGatgcc 4077774 4077992 F yiiF yiiFp6 Sigma70 4077682 4077687 TTTCTT 17 4077705 4077710 TACTTT 4077717 3.516 good homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgagcTTTCTTtaaagattcggcaagggTACTTTtctctcCataga 4077774 4077992 F yiiF yiiFp7 Sigma70 4077583 4077588 TTAATA 21 4077610 4077615 TATAAT 4077620 4.933 high homology 7.00E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtaTTAATAcaaggctgttttacttgaactTATAATaactGcaact 4077774 4077992 F yiiF yiiFp8 Sigma70 4077549 4077554 TTGAAT 18 4077573 4077578 TATTCT 4077585 5.758 high homology 2.50E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattcTTGAATataaaaaacagatgccctTATTCTggtattAataca 4078322 4079251 R fdhE fdhEp1 Sigma70 4079415 4079420 TTGCCG 19 4079390 4079395 TATCAT 4079384 4.06 high homology 5.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTGCCGcagtggcgttaattgtggtTATCATggtgcAtatct 4084039 4084872 F fdhD fdhDp1 Sigma70 4083860 4083865 TTCGAC 16 4083882 4083887 TACATT 4083893 2.013 poor homology 0.00098783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttgtTTCGACattgtcacgtcccattTACATTcgcttGctgcg 4084039 4084872 F fdhD fdhDp2 Sigma70 4083794 4083799 CTGCCA 18 4083818 4083823 TAAAGA 4083828 2.438 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgcCTGCCAtaccgccagcgcagatctTAAAGAactgCcttct 4084039 4084872 F fdhD fdhDp5 Sigma70 4083891 4083896 TTGCTG 20 4083917 4083922 TATTTT 4083928 3.294 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgcTTGCTGcgtgtgcagggagtgggagtTATTTTtctttGcggaa 4085025 4086080 F yiiG yiiGp1 Sigma70 4084980 4084985 TTTATT 21 4085007 4085012 TATTTA 4085017 2.103 poor homology 0.000696112 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttcaTTTATTatgttcactctcttatctataTATTTAtaagGcaatt 4085025 4086080 F yiiG yiiGp2 Sigma70 4084902 4084907 TTGCAG 16 4084924 4084929 GAATTT 4084934 2.413 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaaaTTGCAGgacttattcatttcgtGAATTTtattAtttta 4085025 4086080 F yiiG yiiGp4 Sigma70 4084918 4084923 TTTCGT 18 4084942 4084947 TATAAA 4084952 2.768 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTTCGTgaattttattattttattTATAAAcaaaAtgcgt 4085025 4086080 F yiiG yiiGp6 Sigma70 4084873 4084878 TTAAAA 16 4084895 4084900 TATTAA 4084906 3.273 good homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTAAAAtaagtcctgcgaaataTATTAAattgcAggact 4085025 4086080 F yiiG yiiGp7 Sigma70 4084873 4084878 TTAAAA 19 4084898 4084903 TAAATT 4084909 4.07 high homology 5.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attaaTTAAAAtaagtcctgcgaaatatatTAAATTgcaggActtat 4085025 4086080 F yiiG yiiGp8 Sigma70 4084869 4084874 TTAATT 18 4084893 4084898 TATATT 4084904 4.308 high homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaTTAATTaaaataagtcctgcgaaaTATATTaaattGcagga 4086130 4087878 R frvR frvRp1 Sigma70 4087936 4087941 TTTTCT 18 4087912 4087917 GAAAGT 4087907 2.478 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggggTTTTCTgacgaccttaactgcggaGAAAGTcaacGcgttt 4086130 4087878 R frvR frvRp3 Sigma70 4088005 4088010 TTATCT 15 4087984 4087989 TATGAT 4087978 3.4 good homology 0.000189713 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcgTTATCTgcacgccaacagcggTATGATttcaaAagccg 4091147 4091461 R rhaM rhaMp1 Sigma70 4091569 4091574 TTTATT 19 4091544 4091549 GACCAT 4091538 1.81 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaggTTTATTcgatgggcggcatgaaacaGACCATcagccGtgaag 4099713 4100696 F kdgT kdgTp1 Sigma70 4099587 4099592 TTCAAT 21 4099614 4099619 TATTGA 4099624 2.463 poor homology 0.000471307 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgtTTCAATtgatgtggttttgatcactttTATTGAttaaAtgaat 4099713 4100696 F kdgT kdgTp2 Sigma70 4099612 4099617 TTTATT 15 4099633 4099638 TATCTT 4099645 3.12 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcactTTTATTgattaaatgaatgtcTATCTTcgtttcCatcaa 4099713 4100696 F kdgT kdgTp4 Sigma70 4099603 4099608 TTGATC 17 4099626 4099631 GAATGT 4099637 3.476 good homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggttTTGATCacttttattgattaaatGAATGTctatcTtcgtt 4099713 4100696 F kdgT kdgTp5 Sigma70 4099546 4099551 TTCAAA 18 4099570 4099575 TAAAAA 4099580 3.848 good homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTCAAAataaaaacaatgatccgaTAAAAAtaaaAcagcg 4100845 4101519 F yiiM yiiMp1 Sigma70 4100703 4100708 TTCCTT 21 4100730 4100735 TAACGT 4100742 2.453 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctgcTTCCTTaatccccacagccggatgaacTAACGTtcgtccGgtttg 4100845 4101519 F yiiM yiiMp3 Sigma70 4100623 4100628 TTCTTA 16 4100645 4100650 TAAAGT 4100655 3.103 poor homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccaaTTCTTAcctctatctggtcacgTAAAGTcaaaGccaga 4100845 4101519 F yiiM yiiMp4 Sigma70 4100771 4100776 TTACCG 20 4100797 4100802 TAAAAT 4100807 3.464 good homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatacTTACCGcgaaaacagcacgcctgacaTAAAATaaatAtggtc 4100845 4101519 F yiiM yiiMp5 Sigma70 4100745 4100750 TTGCTA 15 4100766 4100771 GATACT 4100776 4.46 high homology 3.50E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccggtTTGCTAttgagttcctgcctgGATACTtaccGcgaaa 4101625 4102998 R cpxA cpxAp2 Sigma70 4103087 4103092 TTTCCA 20 4103061 4103066 GATCGT 4103056 1.774 poor homology 0.000605171 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacaTTTCCAacctgcgtcgtaaactgccgGATCGTaaagAtggtc 4101625 4102998 R cpxA cpxAp6 Sigma70 4103094 4103099 ATGCAC 17 4103071 4103076 TAAACT 4103065 4.166 high homology 0.000109455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgatATGCACatttccaacctgcgtcgTAAACTgccggAtcgta 4104492 4105394 F fieF fieFp1 Sigma70 4104314 4104319 TTGAGT 21 4104341 4104346 TAGTAA 4104352 2.233 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agctaTTGAGTagtagcaactcacgttcccagTAGTAAaccctGttttc 4104492 4105394 F fieF fieFp3 Sigma70 4104420 4104425 TTGCCT 18 4104444 4104449 GATGAT 4104455 4.098 high homology 6.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaatTTGCCTgctgcttaatgcattgcaGATGATttgctTccgtt 4104492 4105394 F fieF fieFp4 Sigma70 4104439 4104444 TTGCAG 15 4104460 4104465 TATACT 4104472 5.23 high homology 5.24E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcaTTGCAGatgatttgcttccgtTATACTagcgtcAgttga 4106857 4107846 F sbp sbpp1 Sigma70 4106623 4106628 ATGAAT 20 4106649 4106654 CAAACT 4106660 1.894 poor homology 0.000649051 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctacATGAATtctgcaatttattgaatttgCAAACTtttgtAggccg 4106857 4107846 F sbp sbpp2 Sigma70 4106769 4106774 TTATAG 19 4106794 4106799 TAATGT 4106806 2.12 poor homology 0.000800719 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaagTTATAGccaatctttttttattcttTAATGTttggttAacctt 4106857 4107846 F sbp sbpp4 Sigma70 4106784 4106789 TTTTAT 15 4106805 4106810 TAACCT 4106815 2.86 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctttTTTTATtctttaatgtttggtTAACCTtctgGcacgc 4109638 4110237 R yiiQ yiiQp1 Sigma70 4110347 4110352 TTGCTG 20 4110321 4110326 GATGGT 4110315 2.054 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTGCTGtatggtcatgtaagttccttGATGGTtgtctTttcca 4109638 4110237 R yiiQ yiiQp2 Sigma70 4110327 4110332 TTCCTT 18 4110303 4110308 GATTCT 4110297 2.748 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaagTTCCTTgatggttgtcttttccagGATTCTaccctTttgac 4109638 4110237 R yiiQ yiiQp3 Sigma70 4110323 4110328 TTGATG 19 4110298 4110303 TACCCT 4110293 3.28 good homology 0.000141955 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttccTTGATGgttgtcttttccaggattcTACCCTtttgAcaagg 4109638 4110237 R yiiQ yiiQp4 Sigma70 4110365 4110370 TTTAAA 18 4110341 4110346 TATGGT 4110335 4.338 high homology 6.25E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcccTTTAAAtgagaataaccattgctgTATGGTcatgtAagttc 4110338 4110778 F yiiR yiiRp1 Sigma70 4110281 4110286 CTGTCG 15 4110302 4110307 TAGAAT 4110313 2.19 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatatCTGTCGcccttgtcaaaagggTAGAATcctggAaaaga 4110338 4110778 F yiiR yiiRp3 Sigma70 4110183 4110188 TTGTAA 21 4110210 4110215 GAAAAA 4110221 2.583 poor homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctctgTTGTAAcggttaatgcagaacataagaGAAAAAacagcGtacac 4112592 4113602 R glpX glpXp1 Sigma70 4113661 4113666 ATCAAT 21 4113634 4113639 TACACT 4113629 2.663 poor homology 0.000405658 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cacacATCAATaatccctcccttcccctgTGcTACACTtcgcGccatt 4116538 4116783 F zapB zapBp2 Sigma70 4116432 4116437 CTTCAT 15 4116453 4116458 TAAAGT 4116465 2.47 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcggCTTCATacaatcggagctaacTAAAGTgcgctcGtattt 4116538 4116783 F zapB zapBp4 Sigma70 4116413 4116418 CTGGAC 18 4116437 4116442 TACAAT 4116447 2.718 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgCTGGACagcgatggcgcggcttcaTACAATcggaGctaac 4116538 4116783 F zapB zapBp5 Sigma70 4116304 4116309 TTGTTA 20 4116330 4116335 TATTAA 4116342 2.884 poor homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catgtTTGTTAgatcattcgcgcaacaaattTATTAAcattttCgattg 4116538 4116783 F zapB zapBp7 Sigma70 4116332 4116337 TTAACA 15 4116353 4116358 GATTAT 4116365 3.51 good homology 0.000173384 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTAACAttttcgattgatgtgGATTATgtcaccAggaga 4118439 4119770 R hslU hslUp1 Sigma70 4119860 4119865 CTGAAA 20 4119834 4119839 GACATT 4119829 1.674 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattgCTGAAAaggcgttggatattgcaggcGACATTtgcaTctata 4118439 4119770 R hslU hslUp3 Sigma70 4119849 4119854 TTGGAT 21 4119822 4119827 TATACC 4119817 2.483 poor homology 0.000258659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcgTTGGATattgcaggcgacatttgcatcTATACCaaccAtttcc 4118439 4119770 R hslU hslUp4 Sigma70 4119811 4119816 TTTCCA 19 4119786 4119791 TACAAA 4119780 2.83 poor homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaccaTTTCCAcaccatcgaagaattaagcTACAAAgcgtaAggatc 4122635 4124833 R priA priAp2 Sigma70 4124968 4124973 TTAAAA 15 4124947 4124952 GATCAT 4124941 3.1 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgatgTTAAAAgtatagcttcaatacGATCATttcgtAcgaag 4125309 4125917 R yiiX yiiXp1 Sigma70 4125953 4125958 TTGTCT 16 4125931 4125936 TATACA 4125925 3.573 good homology 0.000120966 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcacgTTGTCTgcgacccaccgcttttTATACAtggacGtttaa 4134131 4135036 F yijE yijEp1 Sigma70 4133977 4133982 TTAAAG 19 4134002 4134007 GAAAGT 4134013 2.32 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttgTTAAAGacttcgtggcggcatgggtGAAAGTgatgaAcctcg 4134131 4135036 F yijE yijEp2 Sigma70 4134009 4134014 ATGAAC 21 4134036 4134041 TAATCT 4134048 2.933 poor homology 0.000309671 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagtgATGAACctcgaccgtttcgacctgctgTAATCTgaccccGttcag 4135063 4135680 R yijF yijFp1 Sigma70 4135790 4135795 CTGAAA 16 4135768 4135773 GAATTT 4135763 1.793 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatCTGAAActcccacgttgttcagGAATTTtttaTccgct 4135063 4135680 R yijF yijFp4 Sigma70 4135888 4135893 TTATCA 20 4135862 4135867 TATATT 4135855 3.144 good homology 0.000132358 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacgcTTATCAggcctacgcaatctctgcaaTATATTgaatttGcgtgc 4135063 4135680 R yijF yijFp5 Sigma70 4135918 4135923 TTGAAC 19 4135893 4135898 TACGCT 4135887 3.67 good homology 7.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggagtTTGAACgcaaaattgcctgatgcgcTACGCTtatcaGgccta 4135955 4137058 R gldA gldAp1 Sigma70 4137228 4137233 TTTAAA 18 4137204 4137209 GACTGT 4137198 2.728 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagcTTTAAAacgccgcgtcaggcgctgGACTGTttactGgcagg 4140553 4141632 F frwC frwCp1 Sigma70 4140439 4140444 TTACAA 21 4140466 4140471 TATCCA 4140478 2.303 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgataTTACAAaagtccagtaaatggccttttTATCCActgtttGctccg 4140553 4141632 F frwC frwCp2 Sigma70 4140491 4140496 TTGCCT 20 4140517 4140522 TATGGA 4140528 2.664 poor homology 0.000111666 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgaTTGCCTattgtttcctccatcaaaaaTATGGAcatggGctttc 4140553 4141632 F frwC frwCp3 Sigma70 4140475 4140480 TTTGCT 15 4140496 4140501 TATTGT 4140508 3.31 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cactgTTTGCTccgcctgcgattgccTATTGTttcctcCatcaa 4142018 4144315 F pflD pflDp1 Sigma70 4141855 4141860 TTGAAG 16 4141877 4141882 GACCAT 4141888 2.633 poor homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caagtTTGAAGagcgttttgctggcaaGACCATcgtgcGcgtca 4142018 4144315 F pflD pflDp3 Sigma70 4141939 4141944 TTGAAG 20 4141965 4141970 TAAGTT 4141976 3.344 good homology 6.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaTTGAAGctcacctggcgcaaaccgctTAAGTTcttctCccgct 4145161 4145502 F frwD frwDp1 Sigma70 4144986 4144991 CTGAAT 19 4145011 4145016 TACCGT 4145023 2.13 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcccgCTGAATatcaggcagatccatcTGtTACCGTttcatcAgtacg 4145489 4146340 R yijO yijOp2 Sigma70 4146429 4146434 TTTACA 17 4146406 4146411 CACACT 4146400 3.406 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caatgTTTACAtcgaactcccctcaggcCACACTtttcaGgtggc 4146555 4148288 R yijP yijPp1 Sigma70 4148335 4148340 TTAAGG 21 4148308 4148313 TATTTT 4148302 2.073 poor homology 0.000825105 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatccTTAAGGaattgtcgttacattcggcgaTATTTTttcaaGacagg 4146555 4148288 R yijP yijPp2 Sigma70 4148346 4148351 TTCAGA 20 4148320 4148325 TACATT 4148314 2.314 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataccTTCAGAtatccttaaggaattgtcgtTACATTcggcgAtattt 4146555 4148288 R yijP yijPp5 Sigma70 4148391 4148396 TTCAAT 18 4148367 4148372 TATTCA 4148360 3.178 good homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgttTTCAATatatttctgtctgcatttTATTCAaattctGaatat 4146555 4148288 R yijP yijPp8 Sigma70 4148407 4148412 TTCTAA 15 4148386 4148391 TATATT 4148381 3.64 good homology 0.000131041 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttctgTTCTAAcaccctcgttttcaaTATATTtctgTctgca 4146555 4148288 R yijP yijPp9 Sigma70 4148365 4148370 TTCAAA 19 4148340 4148345 TATCCT 4148334 3.81 good homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTCAAAttctgaatataccttcagaTATCCTtaaggAattgt 4159147 4159794 F fabR fabRp1 Sigma70 4159093 4159098 TTCATT 20 4159119 4159124 TACTTT 4159130 2.304 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgTTCATTctctggtatagtgccagcagTACTTTtggcaAggatt 4159147 4159794 F fabR fabRp2 Sigma70 4159047 4159052 TTTATT 15 4159068 4159073 CACAAT 4159079 2.35 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgtTTTATTgcgttaccgttcattCACAATactggAgcaat 4159147 4159794 F fabR fabRp3 Sigma70 4159032 4159037 TTGCAG 19 4159057 4159062 TACCGT 4159069 2.95 poor homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagaaTTGCAGtaaatatgttttattgcgtTACCGTtcattcAcaata 4159147 4159794 F fabR fabRp4 Sigma70 4158954 4158959 TTTTAT 15 4158975 4158980 GATACT 4158985 2.98 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacgTTTTATtggatttttatcgacGATACTctccGtttaa 4159147 4159794 F fabR fabRp6 Sigma70 4158955 4158960 TTTATT 16 4158977 4158982 TACTCT 4158989 3.393 good homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgtTTTATTggatttttatcgacgaTACTCTccgtttAagcgg 4159147 4159794 F fabR fabRp7 Sigma70 4159066 4159071 TTCACA 17 4159089 4159094 TATGTT 4159100 4.436 high homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttcaTTCACAatactggagcaatccagTATGTTcattcTctggt 4170080 4171108 F murB murBp2 Sigma70 4170018 4170023 CTACAA 21 4170045 4170050 TAAACT 4170057 2.783 poor homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catatCTACAAgccatccccccacagatacggTAAACTagcctcGttttt 4194926 4195699 F nudC nudCp1 Sigma70 4194830 4194835 ATGATT 15 4194851 4194856 TATTCA 4194863 2.37 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagcATGATTgactccgcaagtttgTATTCAaaaactGctcag 4194926 4195699 F nudC nudCp2 Sigma70 4194704 4194709 TTGCCA 21 4194731 4194736 TAGTAA 4194742 3.113 poor homology 8.70E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGCCAggcttaatgccaaccagattgTAGTAAgccacGagcag 4194926 4195699 F nudC nudCp4 Sigma70 4194853 4194858 TTCAAA 19 4194878 4194883 TAAAAA 4194888 3.39 good homology 0.000147748 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtaTTCAAAaactgctcagtgagaaatgTAAAAAccatGttaaa 4194926 4195699 F nudC nudCp5 Sigma70 4194704 4194709 TTGCCA 16 4194726 4194731 GATTGT 4194737 3.613 good homology 5.83E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attctTTGCCAggcttaatgccaaccaGATTGTagtaaGccacg 4197527 4198117 F yjaG yjaGp1 Sigma70 4197465 4197470 ATACAG 20 4197491 4197496 TAAACT 4197501 1.894 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgctATACAGcaaatcagccctaattcaggTAAACTgcggAtaatt 4211257 4211640 F yjaA yjaAp1 Sigma70 4211024 4211029 TTAAAT 21 4211051 4211056 TAAAAC 4211061 2.053 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acagaTTAAATcagaacgcagaagcggtcTGaTAAAACagaaTttgcc 4211257 4211640 F yjaA yjaAp2 Sigma70 4211024 4211029 TTAAAT 19 4211049 4211054 GATAAA 4211060 2.34 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagaTTAAATcagaacgcagaagcggtctGATAAAacagaAtttgc 4218324 4220510 R arpA arpAp2 Sigma70 4220594 4220599 ATGATA 16 4220572 4220577 CATATT 4220566 1.803 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttATGATAtttctttagttgtaatCATATTaaattTtttca 4218324 4220510 R arpA arpAp3 Sigma70 4220684 4220689 TTTAAA 19 4220659 4220664 TAACAA 4220654 2.51 poor homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTAAAcatcaaaccacttaattatTAACAAaatcGcaaga 4218324 4220510 R arpA arpAp4 Sigma70 4220594 4220599 ATGATA 18 4220570 4220575 TATTAA 4220564 3.018 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttATGATAtttctttagttgtaatcaTATTAAattttTtcact 4218324 4220510 R arpA arpAp7 Sigma70 4220618 4220623 CTGCAT 17 4220595 4220600 TATGAT 4220589 4.346 high homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tacggCTGCATtatgagattgagcgattTATGATatttcTttagt 4218324 4220510 R arpA arpAp8 Sigma70 4220568 4220573 TTAAAT 20 4220542 4220547 TAAAAT 4220536 4.404 high homology 1.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcataTTAAATtttttcactgttctgatagtTAAAATtcaagAcatca 4218324 4220510 R arpA arpAp9 Sigma70 4220744 4220749 TTGACG 19 4220719 4220724 TACACT 4220714 4.56 high homology 2.08E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaTTGACGccaaaataacttaatgtcaTACACTtcacAcactt 4227476 4228165 R pepE pepEp1 Sigma70 4228399 4228404 TTAAAC 21 4228372 4228377 TAAATT 4228366 3.243 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTAAACggactgatgagtcgggcagcaTAAATTctcctGtaaaa 4228377 4229249 F rluF rluFp2 Sigma70 4228319 4228324 ATGACT 20 4228345 4228350 TACGGT 4228357 2.244 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctcATGACTattttttatcaacccaaaggTACGGTatattcCgtttt 4228377 4229249 F rluF rluFp3 Sigma70 4228160 4228165 TTCCAT 15 4228181 4228186 TAAGAA 4228192 2.32 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcagTTCCATtacttctccggttagTAAGAAatcacGggagg 4228377 4229249 F rluF rluFp4 Sigma70 4228301 4228306 ATAACA 17 4228324 4228329 TATTTT 4228335 3.326 good homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggaaATAACAaatagttcgctcatgacTATTTTttatcAaccca 4228377 4229249 F rluF rluFp5 Sigma70 4228328 4228333 TTTTAT 16 4228350 4228355 TATATT 4228361 3.453 good homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctattTTTTATcaacccaaaggtacggTATATTccgttTtttac 4229382 4229654 R yjbD yjbDp1 Sigma70 4229786 4229791 TTTAAT 21 4229759 4229764 TAATTA 4229753 2.123 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgccTTTAATttttttatctgcatctctaatTAATTAtcgaaAgagat 4229382 4229654 R yjbD yjbDp3 Sigma70 4229705 4229710 CTGCTC 15 4229684 4229689 TACACT 4229678 2.45 poor homology 0.000536738 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagttCTGCTCgcaaacgaattcccgTACACTgaactCtctgg 4229382 4229654 R yjbD yjbDp5 Sigma70 4229786 4229791 TTTAAT 17 4229763 4229768 TAATTA 4229756 3.096 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgccTTTAATttttttatctgcatctcTAATTAattatcGaaaga 4238802 4240277 R xylE xylEp2 Sigma70 4240331 4240336 CTGACA 19 4240306 4240311 GATAAA 4240300 1.89 poor homology 0.000850233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgcCTGACAattccaacatcaatgcactGATAAAagatcAgaatg 4238802 4240277 R xylE xylEp3 Sigma70 4240351 4240356 ATGATA 16 4240329 4240334 GACAAT 4240324 2.693 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaATGATAattgccttaactgcctGACAATtccaAcatca 4238802 4240277 R xylE xylEp4 Sigma70 4240373 4240378 TTACGT 18 4240349 4240354 GATAAT 4240342 2.838 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agacaTTACGTaaacgcattgtaaaaaatGATAATtgccttAactgc 4238802 4240277 R xylE xylEp5 Sigma70 4240489 4240494 TTTACG 20 4240463 4240468 GATAAT 4240457 2.934 poor homology 0.000231716 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTACGttatttgttttcccacttacGATAATtctctTtcgtg 4238802 4240277 R xylE xylEp6 Sigma70 4240419 4240424 TTATCA 21 4240392 4240397 TAAGAT 4240386 3.173 good homology 0.000261259 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtttTTATCAattttggataattatcacaatTAAGATcacagAaaaga 4238802 4240277 R xylE xylEp7 Sigma70 4240489 4240494 TTTACG 17 4240466 4240471 TACGAT 4240460 4.006 good homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttattTTTACGttatttgttttcccactTACGATaattcTctttc 4240649 4241539 R malG malGp1 Sigma70 4241781 4241786 TTAACA 21 4241754 4241759 TAACCA 4241748 2.213 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence taactTTAACAacttcgtgctgattcaacTGtTAACCAacggcGgcccg 4240649 4241539 R malG malGp2 Sigma70 4241730 4241735 TTGGCA 17 4241707 4241712 TATACC 4241701 3.566 good homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgtcTTGGCAcgaccacgccagccggtTATACCgacctGcttgt 4257260 4257469 F yjbJ yjbJp1 Sigma70 4257168 4257173 ATCCTA 21 4257195 4257200 TAATCT 4257205 2.063 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataATCCTAagccaaattgctgactacactTAATCTcacgTtcaga 4257260 4257469 F yjbJ yjbJp2 Sigma70 4257168 4257173 ATCCTA 15 4257189 4257194 TACACT 4257201 2.4 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataATCCTAagccaaattgctgacTACACTtaatctCacgtt 4257511 4258026 R zur zurp1 Sigma70 4258087 4258092 TTCTCG 20 4258061 4258066 TAAAGT 4258056 2.254 poor homology 0.000370744 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aagggTTCTCGgtgtttttcctggaacaTGgTAAAGTaaggAcattc 4257511 4258026 R zur zurp2 Sigma70 4258076 4258081 TTTCCT 18 4258052 4258057 GACATT 4258047 2.468 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgttTTTCCTggaacatggtaaagtaagGACATTcttaAccccc 4257511 4258026 R zur zurp3 Sigma70 4258193 4258198 ATTTAA 15 4258172 4258177 TATTAT 4258165 2.6 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatttATTTAAaaatgaattattaatTATTATcgtgttGataat 4257511 4258026 R zur zurp5 Sigma70 4258185 4258190 ATGAAT 19 4258160 4258165 GATAAT 4258154 3.39 good homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaATGAATtattaattattatcgtgttGATAATggtacGacaag 4257511 4258026 R zur zurp6 Sigma70 4258192 4258197 TTTAAA 17 4258169 4258174 TATCGT 4258164 4.696 high homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atttaTTTAAAaatgaattattaattatTATCGTgttgAtaatg 4258344 4258598 F yjbL yjbLp1 Sigma70 4258172 4258177 ATAATA 20 4258198 4258203 TAAATT 4258209 2.054 poor homology 0.000564257 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acacgATAATAattaataattcatttttaaaTAAATTgcttcAagtta 4258344 4258598 F yjbL yjbLp2 Sigma70 4258117 4258122 TTTTCT 18 4258141 4258146 TATGTT 4258152 2.938 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttgaTTTTCTgttttgtaggtaaggTGtTATGTTgccttGtcgta 4258344 4258598 F yjbL yjbLp3 Sigma70 4258202 4258207 TTGCTT 17 4258225 4258230 TATTTA 4258236 3.786 good homology 0.000155324 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataaaTTGCTTcaagttaactcgctattTATTTAactggGtttaa 4258344 4258598 F yjbL yjbLp4 Sigma70 4258237 4258242 TTTAAA 17 4258260 4258265 GAAATT 4258270 4.016 high homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgggTTTAAAcgcatacctgtagttcaGAAATTatgaGcgatt 4258344 4258598 F yjbL yjbLp5 Sigma70 4258145 4258150 TTGCCT 20 4258171 4258176 GATAAT 4258182 4.204 high homology 2.39E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatgTTGCCTtgtcgtaccattatcaacacGATAATaattaAtaatt 4259737 4260729 F dusA dusAp1 Sigma70 4259490 4259495 CTTAAC 15 4259511 4259516 TAAGAT 4259523 1.79 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttggcCTTAACaaagttaacggctaaTAAGATtatttcCatcac 4259737 4260729 F dusA dusAp2 Sigma70 4259594 4259599 TTGTTA 16 4259616 4259621 TATTGA 4259628 2.643 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcctgTTGTTAtggtatagtaccccgcTATTGAgcctccTgaata 4259737 4260729 F dusA dusAp3 Sigma70 4259618 4259623 TTGAGC 21 4259645 4259650 TAACAT 4259657 3.023 poor homology 0.000322309 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctaTTGAGCctcctgaatagtgatgctgaaTAACATaaccccAtgata 4259737 4260729 F dusA dusAp6 Sigma70 4259644 4259649 ATAACA 19 4259669 4259674 TAAAAT 4259681 3.32 good homology 8.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctgaATAACAtaaccccatgatatatcgaTAAAATaatctcTacatt 4259737 4260729 F dusA dusAp7 Sigma70 4259657 4259662 ATGATA 18 4259681 4259686 TACATT 4259692 3.518 good homology 0.000274654 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accccATGATAtatcgataaaataatctcTACATTtgaaaAtgcac 4267437 4268150 F aphA aphAp1 Sigma70 4267239 4267244 TTACAT 20 4267265 4267270 TACAAA 4267276 2.364 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatccTTACATcgagtaataaacattttttaTACAAAaaaagAcagga 4267437 4268150 F aphA aphAp2 Sigma70 4267207 4267212 TTCATC 16 4267229 4267234 TAATGT 4267241 2.503 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaggaTTCATCataataaacgtaaaatTAATGTatccttAcatcg 4267437 4268150 F aphA aphAp3 Sigma70 4267311 4267316 CTGCTT 18 4267335 4267340 GATAAT 4267346 3.028 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcatcCTGCTTttcatcacaaaaaccgcaGATAATccttcCtttcc 4267437 4268150 F aphA aphAp4 Sigma70 4267239 4267244 TTACAT 18 4267263 4267268 TATACA 4267274 3.528 good homology 0.000256085 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatccTTACATcgagtaataaacatttttTATACAaaaaaAgacag 4267437 4268150 F aphA aphAp5 Sigma70 4267343 4267348 TTCCTT 17 4267366 4267371 TATGGT 4267377 3.966 good homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccTTCCTTtccccggcagctggcgtTATGGTcagatGgtttt 4272783 4273064 R yjcB yjcBp2 Sigma70 4273280 4273285 TTAATG 16 4273258 4273263 TAATCT 4273252 3.093 poor homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcccTTAATGccactgaaaaaccacaTAATCTgtacaGcaata 4272783 4273064 R yjcB yjcBp3 Sigma70 4273225 4273230 ATGGCT 19 4273200 4273205 TATAGT 4273194 3.19 good homology 0.000115067 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ctaatATGGCTaacaaacaatcaattgTGaTATAGTtcacaAaatta 4276502 4277851 F yjcD yjcDp1 Sigma70 4276405 4276410 TTGTCG 19 4276430 4276435 TAACGT 4276442 2.63 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTGTCGcaaacctggagcaggaagaTAACGTttcgctGgcagg 4276502 4277851 F yjcD yjcDp3 Sigma70 4276451 4276456 TTGTCC 15 4276472 4276477 GAAAAT 4276482 3.1 poor homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaTTGTCCgccacgcatcttgacGAAAATtaaaCtctca 4276502 4277851 F yjcD yjcDp5 Sigma70 4276451 4276456 TTGTCC 21 4276478 4276483 TAAACT 4276489 3.973 good homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggaTTGTCCgccacgcatcttgacgaaaatTAAACTctcagGggatg 4276502 4277851 F yjcD yjcDp6 Sigma70 4276306 4276311 TTGAAA 18 4276330 4276335 GATAAT 4276341 5.498 high homology 2.24E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcggTTGAAAaagccgctatgatcgccgGATAATcgtttGctttt 4278003 4279652 F yjcE yjcEp1 Sigma70 4277824 4277829 CTTCTA 19 4277849 4277854 TAATCT 4277861 1.93 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgacCTTCTAtgcgggtggctgggctatcTAATCTttcatcGgattc 4278003 4279652 F yjcE yjcEp5 Sigma70 4277924 4277929 TTGCGA 15 4277945 4277950 GAGAAT 4277955 3 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcttTTGCGAtattctgaaaaaaatGAGAATtcagGcataa 4278003 4279652 F yjcE yjcEp6 Sigma70 4277934 4277939 CTGAAA 18 4277958 4277963 TAACGT 4277970 3.138 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atattCTGAAAaaaatgagaattcaggcaTAACGTctttctCagatc 4279806 4281098 R yjcF yjcFp1 Sigma70 4281227 4281232 CTCCCA 19 4281202 4281207 TAATAT 4281196 2.17 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcctCTCCCAaatgcatcaccttttcccaTAATATtaaacAaataa 4279806 4281098 R yjcF yjcFp2 Sigma70 4281165 4281170 TTTTTG 15 4281144 4281149 GATAAT 4281138 2.32 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgaTTTTTGacagtcgtagaaaatGATAATgcagaGaatat 4279806 4281098 R yjcF yjcFp3 Sigma70 4281220 4281225 ATGCAT 18 4281196 4281201 TAAACA 4281190 2.898 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccaaATGCATcaccttttcccataatatTAAACAaataaActcat 4279806 4281098 R yjcF yjcFp4 Sigma70 4281210 4281215 TTTTCC 16 4281188 4281193 TAAACT 4281182 2.933 poor homology 0.000139144 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaccTTTTCCcataatattaaacaaaTAAACTcattaAaaaat 4279806 4281098 R yjcF yjcFp5 Sigma70 4281299 4281304 TTGGCG 20 4281273 4281278 TAATCT 4281267 3.344 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggctTTGGCGttgagcaaggccgcgcgcatTAATCTctcccCttccc 4279806 4281098 R yjcF yjcFp6 Sigma70 4281162 4281167 TTGACA 21 4281135 4281140 GAGAAT 4281129 4.123 high homology 1.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGACAgtcgtagaaaatgataatgcaGAGAATatgccTtttct 4292504 4293817 F gltP gltPp2 Sigma70 4292399 4292404 TTAAAA 20 4292425 4292430 CACAAT 4292435 2.274 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagcgTTAAAAaaatctacaaaccaacgcaaCACAATtcatGccctg 4292504 4293817 F gltP gltPp4 Sigma70 4292360 4292365 TTGCGC 16 4292382 4292387 GATACT 4292392 2.623 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagggTTGCGCaacataccgcgcaaatGATACTgatcAtaagc 4292504 4293817 F gltP gltPp6 Sigma70 4292292 4292297 TTCATT 21 4292319 4292324 TATTAT 4292330 4.093 high homology 5.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTCATTaatcctgccataaactcgcgtTATTATgcattAatgca 4292504 4293817 F gltP gltPp7 Sigma70 4292285 4292290 ATGGTT 17 4292308 4292313 TAAACT 4292320 4.096 high homology 0.000118571 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacaaATGGTTattcattaatcctgccaTAAACTcgcgttAttatg 4294459 4295148 R yjcO yjcOp2 Sigma70 4295200 4295205 TTTTTA 15 4295179 4295184 TATACT 4295174 4.09 high homology 3.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgttTTTTTAtccattcgaactcttTATACTggttActccc 4305806 4306501 R alsE alsEp1 Sigma70 4306576 4306581 TTACCA 20 4306550 4306555 TAATTA 4306544 1.494 poor homology 0.000784864 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acctaTTACCAactggtggtgatgggcggatTAATTAtcgcgGctgtc 4305806 4306501 R alsE alsEp2 Sigma70 4306718 4306723 TTGAAA 19 4306693 4306698 CATCAT 4306687 3.23 good homology 1.29E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggttTTGAAAcctatgccattgccagcgcCATCATtggcgGcacca 4311891 4312220 F yjdP yjdPp1 Sigma70 4311707 4311712 TTGGCC 16 4311729 4311734 GATTGT 4311739 2.223 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtggTTGGCCtcgaactggcaaaaatGATTGTggatGcgtgg 4311891 4312220 F yjdP yjdPp2 Sigma70 4311841 4311846 ATGGAT 19 4311866 4311871 TAGAGT 4311877 2.36 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttgcATGGATgagtaatgattaatgtggaTAGAGTttcttTttgag 4323321 4323764 R yjdN yjdNp2 Sigma70 4323832 4323837 TTATCA 16 4323810 4323815 TATAAA 4323804 2.863 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtcTTATCAggccgcctctcatctgTATAAAtttcgAactac 4323321 4323764 R yjdN yjdNp5 Sigma70 4323832 4323837 TTATCA 18 4323808 4323813 TAAATT 4323803 3.568 good homology 0.000248517 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtcTTATCAggccgcctctcatctgtaTAAATTtcgaActaca 4324422 4324757 R yjdM yjdMp1 Sigma70 4324971 4324976 ATTAAA 19 4324946 4324951 TAACAT 4324939 2.45 poor homology 0.000558643 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgtgaATTAAAaaaagaacaagtagagcatTAACATtatcttAaataa 4324422 4324757 R yjdM yjdMp2 Sigma70 4324970 4324975 TTAAAA 21 4324943 4324948 CATTAT 4324937 2.723 poor homology 0.000285862 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgaaTTAAAAaaagaacaagtagagcattaaCATTATcttaaAtaata 4324422 4324757 R yjdM yjdMp3 Sigma70 4324936 4324941 TTAAAT 21 4324909 4324914 TATTTT 4324902 3.693 good homology 0.000119762 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttatcTTAAATaataaatagaggcaaaaagatTATTTTctttttGcgttt 4324422 4324757 R yjdM yjdMp5 Sigma70 4324888 4324893 TTCAAA 17 4324865 4324870 TAAAAT 4324859 5.846 high homology 1.21E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcctTTCAAAtgaaaacgatcgtcgtcTAAAATcagcaGtaccc 4330204 4331295 R basS basSp1 Sigma70 4331451 4331456 TTCTCT 20 4331425 4331430 GACAAT 4331419 1.784 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ggaaaTTCTCTacaacgacatctataacTGgGACAATgaaccCtcgac 4330204 4331295 R basS basSp4 Sigma70 4331527 4331532 TTGATT 15 4331506 4331511 TATGCT 4331500 4.96 high homology 1.38E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagagTTGATTctgacgcccaaagaaTATGCTctgctGtcacg 4331970 4333613 R eptA eptAp1 Sigma70 4333691 4333696 ATAAAA 16 4333669 4333674 TAAGGT 4333662 2.103 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaacATAAAAgccaaccttaagaactTAAGGTtggcttAatttt 4333717 4335054 R adiC adiCp1 Sigma70 4335189 4335194 CTGATT 21 4335162 4335167 TATTAA 4335156 2.233 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcCTGATTtttaaccttaacgaagagctaTATTAAtaacgGcatca 4333717 4335054 R adiC adiCp2 Sigma70 4335111 4335116 ATGCAG 20 4335085 4335090 TATTGT 4335079 2.394 poor homology 0.000430743 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcgaATGCAGgcgtatgatatgacgtaattTATTGTcacgaAgctcg 4333717 4335054 R adiC adiCp3 Sigma70 4335183 4335188 TTTAAC 18 4335159 4335164 TAATAA 4335154 2.558 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgattTTTAACcttaacgaagagctatatTAATAAcggcAtcagc 4333717 4335054 R adiC adiCp4 Sigma70 4335266 4335271 TTTATT 18 4335242 4335247 TACGGT 4335236 3.178 good homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtacTTTATTtctgtctttaaagacttcTACGGTatgacGccgct 4333717 4335054 R adiC adiCp5 Sigma70 4335189 4335194 CTGATT 19 4335164 4335169 TATATT 4335159 3.29 good homology 0.000153778 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcCTGATTtttaaccttaacgaagagcTATATTaataAcggca 4333717 4335054 R adiC adiCp6 Sigma70 4335123 4335128 TTCAAC 15 4335102 4335107 TATGAT 4335096 3.56 good homology 0.000152248 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTCAACtatcgaatgcaggcgTATGATatgacGtaatt 4342952 4343581 R yjdF yjdFp1 Sigma70 4343627 4343632 TTCACG 19 4343602 4343607 TATTTT 4343596 2.88 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaatTTCACGcttgctggtgaatagtcagTATTTTccctgAtttgc 4349866 4350096 F yjdI yjdIp1 Sigma70 4349755 4349760 ATGATT 15 4349776 4349781 GAGACT 4349787 2.17 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaATGATTggctatataggggaaGAGACTctggcAacgga 4349866 4350096 F yjdI yjdIp2 Sigma70 4349651 4349656 TTGCGT 18 4349675 4349680 GAATGT 4349687 2.548 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacgtTTGCGTaacatgcggtagggcaatGAATGTctcatcAgcttc 4349866 4350096 F yjdI yjdIp4 Sigma70 4349739 4349744 TTCAAA 19 4349764 4349769 TATATA 4349775 2.89 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtaaTTCAAAgggagtaagaatgattggcTATATAggggaAgagac 4349866 4350096 F yjdI yjdIp5 Sigma70 4349633 4349638 CTCAAT 17 4349656 4349661 TAACAT 4349667 2.916 poor homology 0.000978001 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtaCTCAATttcatcggacgtttgcgTAACATgcggtAgggca 4350607 4350903 F yjdK yjdKp1 Sigma70 4350364 4350369 ATGATA 19 4350389 4350394 TACAGA 4350400 1.91 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgATGATAttcgcagttgatgggagagTACAGAgtcacGatatt 4350607 4350903 F yjdK yjdKp2 Sigma70 4350567 4350572 TTGCGT 15 4350588 4350593 TATTGA 4350599 2.44 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aagttTTGCGTccccagagcgtttaaTATTGAtaggaGtcata 4350607 4350903 F yjdK yjdKp3 Sigma70 4350377 4350382 TTGATG 19 4350402 4350407 TATTTT 4350413 3.84 good homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcagTTGATGggagagtacagagtcacgaTATTTTtcattCtctcc 4350607 4350903 F yjdK yjdKp4 Sigma70 4350377 4350382 TTGATG 17 4350400 4350405 GATATT 4350410 4.246 high homology 0.000160054 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcagTTGATGggagagtacagagtcacGATATTtttcAttctc 4352977 4354434 R yjdL yjdLp1 Sigma70 4354511 4354516 TTGAAA 15 4354490 4354495 TAATTA 4354485 3.47 good homology 1.27E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggtaTTGAAAgaagaaagcaaaaaaTAATTAgctcGtacaa 4352977 4354434 R yjdL yjdLp2 Sigma70 4354464 4354469 TTGCCA 17 4354441 4354446 TAAGGA 4354436 3.896 good homology 9.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggcTTGCCActtcccttttttgctcaTAAGGAgaacAcatga 4352977 4354434 R yjdL yjdLp3 Sigma70 4354570 4354575 TTGAAA 17 4354547 4354552 TACCGT 4354540 5.066 high homology 7.28E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggctTTGAAAccgatattcacggtgcaTACCGTcaggctGatggc 4367179 4368435 R yjeH yjeHp1 Sigma70 4368522 4368527 TTTCTT 16 4368500 4368505 GAATCT 4368495 2.243 poor homology 0.000724521 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcaaTTTCTTcatcgccgtcataagcGAATCTgattGtgcta 4371388 4372257 R yjeJ yjeJp1 Sigma70 4372325 4372330 CTACCA 19 4372300 4372305 TAAATT 4372293 2.02 poor homology 0.000710174 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tattaCTACCAagcccatttatctggcttaTAAATTaaaattAattat 4371388 4372257 R yjeJ yjeJp2 Sigma70 4372389 4372394 TTAACC 15 4372368 4372373 TATAGA 4372363 2.43 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTAACCtttcttttctgtttaTATAGAgtgaGtacgg 4371388 4372257 R yjeJ yjeJp4 Sigma70 4372328 4372333 TTACTA 20 4372302 4372307 TATAAA 4372296 2.904 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aactaTTACTAccaagcccatttatctggctTATAAAttaaaAttaat 4371388 4372257 R yjeJ yjeJp5 Sigma70 4372412 4372417 TTTTAT 18 4372388 4372393 TAACCT 4372382 3.088 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttactTTTTATatagctaacaccaataatTAACCTttcttTtctgt 4371388 4372257 R yjeJ yjeJp6 Sigma70 4372454 4372459 TTGCAT 16 4372432 4372437 TATGCA 4372426 3.423 good homology 6.77E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcccgTTGCATaacctttaattattcaTATGCAttgctGttgtt 4371388 4372257 R yjeJ yjeJp8 Sigma70 4372389 4372394 TTAACC 17 4372366 4372371 TAGAGT 4372361 3.726 good homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTAACCtttcttttctgtttataTAGAGTgagtAcggct 4372652 4373680 R yjeK yjeKp2 Sigma70 4373791 4373796 TTCAAC 18 4373767 4373772 TAACAT 4373760 3.258 good homology 0.000385874 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcgcTTCAACcgcgtaaggttcgccgtcTAACATgattttAagacc 4372652 4373680 R yjeK yjeKp3 Sigma70 4373758 4373763 TTTAAG 20 4373732 4373737 TATAGT 4373726 3.674 good homology 4.63E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence atgatTTTAAGaccagcacgaaaatcgtTGcTATAGTacgttGccata 4377030 4377389 R frdD frdDp3 Sigma70 4377528 4377533 TTGAAC 16 4377506 4377511 CAATAT 4377501 2.593 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTGAACtggcaccgaaagcggcCAATATcattGtaaaa 4377030 4377389 R frdD frdDp4 Sigma70 4377602 4377607 TTTACA 15 4377581 4377586 GATCAT 4377574 3.11 poor homology 0.000234044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacttTTTACAaaacccggttatcgtGATCATtaacctGatcac 4377030 4377389 R frdD frdDp5 Sigma70 4377602 4377607 TTTACA 21 4377575 4377580 TAACCT 4377570 3.703 good homology 0.000107287 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gacttTTTACAaaacccggttatcgtgatcatTAACCTgatcActctg 4377030 4377389 R frdD frdDp7 Sigma70 4377528 4377533 TTGAAC 19 4377503 4377508 TATCAT 4377497 4.28 high homology 3.17E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctggtTTGAACtggcaccgaaagcggccaaTATCATtgtaaAagacg 4381862 4383364 F yjeM yjeMp1 Sigma70 4381708 4381713 TTTCAT 15 4381729 4381734 CACAAT 4381740 2.37 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgtTTTCATttttccgttaaaggcCACAATttaagActgga 4381862 4383364 F yjeM yjeMp3 Sigma70 4381721 4381726 TTAAAG 17 4381744 4381749 GATATT 4381754 3.446 good homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttccgTTAAAGgccacaatttaagactgGATATTtgatAtcatc 4384070 4387393 R yjeP yjePp1 Sigma70 4387612 4387617 TTATCA 16 4387590 4387595 TAAAGT 4387583 3.403 good homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caccgTTATCAacctgtttgcaccgggTAAAGTgaatctGgttga 4388480 4389532 R rsgA rsgAp1 Sigma70 4389591 4389596 TTGATC 19 4389566 4389571 GATGTT 4389559 2.2 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctataTTGATCcacaattgcgtgtatcataGATGTTttgcccAtcagg 4388480 4389532 R rsgA rsgAp2 Sigma70 4389600 4389605 GTGACT 21 4389573 4389578 TATCAT 4389568 2.493 poor homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcacaGTGACTatattgatccacaattgcgtgTATCATagatGttttg 4388480 4389532 R rsgA rsgAp3 Sigma70 4389606 4389611 TTCACA 15 4389585 4389590 CACAAT 4389579 2.59 poor homology 0.000409735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acccaTTCACAgtgactatattgatcCACAATtgcgtGtatca 4388480 4389532 R rsgA rsgAp4 Sigma70 4389763 4389768 CTGCAA 18 4389739 4389744 GAATAT 4389734 2.688 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgtaCTGCAAtggtcggcccttctgccaGAATATtcagGttggc 4388480 4389532 R rsgA rsgAp8 Sigma70 4389616 4389621 TTTCCA 17 4389593 4389598 TATTGA 4389587 3.436 good homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTTCCAcccattcacagtgactaTATTGAtccacAattgc 4388480 4389532 R rsgA rsgAp12 Sigma70 4389616 4389621 TTTCCA 15 4389595 4389600 TATATT 4389589 4.31 high homology 4.97E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTTCCAcccattcacagtgacTATATTgatccAcaatt 4389627 4390172 F orn ornp1 Sigma70 4389510 4389515 TTGGAG 20 4389536 4389541 TACAGA 4389547 1.894 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcctTTGGAGagtttatttttactcaatcgTACAGActcctGgtcgc 4389627 4390172 F orn ornp2 Sigma70 4389573 4389578 ATGATA 15 4389594 4389599 CAATAT 4389604 1.92 poor homology 0.000997758 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctATGATAcacgcaattgtggatCAATATagtcActgtg 4389627 4390172 F orn ornp5 Sigma70 4389573 4389578 ATGATA 18 4389597 4389602 TATAGT 4389607 4.398 high homology 4.59E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catctATGATAcacgcaattgtggatcaaTATAGTcactGtgaat 4402409 4402606 F yjeT yjeTp2 Sigma70 4402298 4402303 ATGAAG 21 4402325 4402330 TAATAT 4402335 3.293 good homology 0.000207579 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctacATGAAGacgccgacttccgcaacgcgtTAATATaacgActgcg 4414040 4414315 R yjfN yjfNp1 Sigma70 4414424 4414429 TTGCGT 19 4414399 4414404 CACAAT 4414393 2.09 poor homology 0.000662162 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgctTTGCGTccctatgcgtttacctgtgCACAATaaattAccggc 4414040 4414315 R yjfN yjfNp2 Sigma70 4414486 4414491 TTCACA 15 4414465 4414470 TAAATA 4414459 2.74 poor homology 0.000359786 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtaTTCACAagccattttgtaccgTAAATAaatcaGacaac 4414464 4414793 R bsmA bsmAp1 Sigma70 4414863 4414868 TTTCAT 19 4414838 4414843 TAACAA 4414832 2.02 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cacgtTTTCATtcgaaaatcgcgtaccaggTAACAAttcggGaacat 4414464 4414793 R bsmA bsmAp3 Sigma70 4414901 4414906 TTCATA 16 4414879 4414884 TACGCT 4414872 3.153 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attagTTCATAatgttgagatgtgggtTACGCTttcgtcAcgttt 4414464 4414793 R bsmA bsmAp5 Sigma70 4414920 4414925 TTTCTG 17 4414897 4414902 TAATGT 4414892 3.556 good homology 0.000569928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaagTTTCTGctggcggtattagttcaTAATGTtgagAtgtgg 4414975 4415724 F yjfP yjfPp1 Sigma70 4414783 4414788 CTGCTA 20 4414809 4414814 TAATTT 4414821 2.094 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtttcCTGCTAaccatagtgtagtgccttatTAATTTaactttGgggga 4414975 4415724 F yjfP yjfPp2 Sigma70 4414779 4414784 TTTCCT 21 4414806 4414811 TATTAA 4414816 2.823 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttacgTTTCCTgctaaccatagtgtagtgcctTATTAAtttaActttg 4415721 4416476 R ulaR ulaRp1 Sigma70 4416514 4416519 TTCAAA 16 4416492 4416497 CAAATT 4416486 2.083 poor homology 0.000476044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gctatTTCAAAtatcatctaaaaaaatCAAATTttatcGgaata 4415721 4416476 R ulaR ulaRp2 Sigma70 4416602 4416607 CTGCCG 15 4416581 4416586 TAATCT 4416576 2.64 poor homology 0.000466618 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggatCTGCCGttcaagtcattcctgTAATCTgtcgTttata 4415721 4416476 R ulaR ulaRp3 Sigma70 4416526 4416531 TTTCCT 19 4416501 4416506 TAAAAA 4416495 2.99 poor homology 0.000288735 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagtaTTTCCTggctatttcaaatatcatcTAAAAAaatcaAatttt 4422539 4422814 R yjfY yjfYp1 Sigma70 4423039 4423044 TTATAG 16 4423017 4423022 TAAACT 4423011 3.083 poor homology 0.000118571 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcgTTATAGtacttgtatgcctcgcTAAACTcaaggGcagag 4422539 4422814 R yjfY yjfYp2 Sigma70 4422878 4422883 TTGATT 15 4422857 4422862 GATCAT 4422851 3.7 good homology 7.12E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatcaTTGATTaaaattaaatcagaaGATCATcacagAggaga 4424651 4425445 R yjfZ yjfZp1 Sigma70 4425497 4425502 TTTTCT 16 4425475 4425480 GATATT 4425469 2.143 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gatttTTTTCTgtgaacattcagcTGcGATATTtataaAaacat 4424651 4425445 R yjfZ yjfZp2 Sigma70 4425510 4425515 TTAATA 15 4425489 4425494 GAACAT 4425482 2.5 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttttaTTAATAtcgatttttttcTGtGAACATtcagctGcgata 4424651 4425445 R yjfZ yjfZp5 Sigma70 4425543 4425548 TTTTCA 19 4425518 4425523 TATTTT 4425512 2.94 poor homology 0.00030659 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctaTTTTCAccacttcagaaaacaaactTATTTTtattaAtatcg 4424651 4425445 R yjfZ yjfZp6 Sigma70 4425533 4425538 TTCAGA 18 4425509 4425514 TAATAT 4425503 3.618 good homology 0.000218221 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accacTTCAGAaaacaaacttatttttatTAATATcgattTttttc 4424651 4425445 R yjfZ yjfZp8 Sigma70 4425572 4425577 TTGATA 21 4425545 4425550 TATTTT 4425540 4.693 high homology 1.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGATAttaatatctttcaccatccgcTATTTTcaccActtca 4426958 4427578 F fklB fklBp3 Sigma70 4426822 4426827 TTTATT 20 4426848 4426853 TATTGT 4426859 3.374 good homology 0.000129737 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ccgccTTTATTatattcatacgggatatTGcTATTGTttcttTttccc 4426958 4427578 F fklB fklBp6 Sigma70 4426895 4426900 TTTACC 17 4426918 4426923 TATGCT 4426928 4.286 high homology 0.000191619 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aaagtTTTACCcaaagaagtgtggcTGaTATGCTgcccGctact 4430114 4431079 R ytfF ytfFp1 Sigma70 4431223 4431228 TTAGCC 20 4431197 4431202 TAATGT 4431191 1.724 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caacgTTAGCCgaaagcgtaagccatcttttTAATGTtaataActagt 4430114 4431079 R ytfF ytfFp5 Sigma70 4431199 4431204 TTTAAT 17 4431176 4431181 TAAAGT 4431171 5.266 high homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcttTTTAATgttaataactagttaatTAAAGTggcaTcctcc 4431187 4432047 R qorB qorBp1 Sigma70 4432131 4432136 TTTCAT 21 4432104 4432109 TACTAA 4432098 2.263 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actcaTTTCATacttacctttttgtacgtactTACTAAaagtaAgttta 4431187 4432047 R qorB qorBp2 Sigma70 4432154 4432159 TTGCGA 20 4432128 4432133 CATACT 4432122 2.484 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agttgTTGCGAcaggctaacctgactcatttCATACTtacctTtttgt 4431187 4432047 R qorB qorBp3 Sigma70 4432116 4432121 TTTGTA 15 4432095 4432100 TAAGTT 4432089 2.5 poor homology 0.000731802 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accttTTTGTAcgtacttactaaaagTAAGTTtaggtGttagc 4431187 4432047 R qorB qorBp5 Sigma70 4432105 4432110 TTACTA 17 4432082 4432087 TAGCGT 4432076 3.076 poor homology 0.000769323 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgtacTTACTAaaagtaagtttaggTGtTAGCGTatttaAacaca 4432136 4432516 F ytfH ytfHp3 Sigma70 4432075 4432080 TTTAAA 18 4432099 4432104 TACTTT 4432110 3.708 good homology 0.000133688 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtgTTTAAAtacgctaacacctaaactTACTTTtagtaAgtacg 4432136 4432516 F ytfH ytfHp5 Sigma70 4432070 4432075 TTGTGT 17 4432093 4432098 TAAACT 4432105 4.696 high homology 6.51E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgtcTTGTGTttaaatacgctaacaccTAAACTtactttTagtaa 4434778 4435518 F cysQ cysQp1 Sigma70 4434602 4434607 TTATCA 21 4434629 4434634 GAGAAT 4434639 2.143 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccttTTATCAtcgggaatacgaaagaaaaggGAGAATaaacGtctta 4434778 4435518 F cysQ cysQp2 Sigma70 4434717 4434722 TTAACG 20 4434743 4434748 TAAGTT 4434755 2.144 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcaTTAACGatagggtataagtaaaacaaTAAGTTaacaccGctcac 4434778 4435518 F cysQ cysQp4 Sigma70 4434581 4434586 TTAATC 16 4434603 4434608 TATCAT 4434614 2.923 poor homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaacTTAATCatcagggacatcctttTATCATcgggaAtacga 4435730 4436668 F ytfI ytfIp1 Sigma70 4435636 4435641 TTACAT 20 4435662 4435667 GATAGT 4435673 2.624 poor homology 0.00032882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataagTTACATtttaataatgagcgttttttGATAGTttactTctata 4435730 4436668 F ytfI ytfIp4 Sigma70 4435660 4435665 TTGATA 19 4435685 4435690 TATTTA 4435696 3.22 good homology 6.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttttTTGATAgtttacttctatagtgagaTATTTAatggcGacata 4435730 4436668 F ytfI ytfIp6 Sigma70 4435605 4435610 TTTAAA 18 4435629 4435634 TAATAA 4435640 3.478 good homology 0.000164928 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttgtaTTTAAAgtgcaaaaattcaatTGcTAATAAgttacAtttta 4435730 4436668 F ytfI ytfIp7 Sigma70 4435583 4435588 TTATAA 18 4435607 4435612 TAAAGT 4435618 3.888 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaagTTATAAataaaaagagattgtattTAAAGTgcaaaAattca 4435730 4436668 F ytfI ytfIp9 Sigma70 4435687 4435692 TTTAAT 20 4435713 4435718 TAAAAT 4435725 4.504 high homology 1.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agataTTTAATggcgacataaagtaaccaaaTAAAATaaggttGtcata 4435730 4436668 F ytfI ytfIp10 Sigma70 4435660 4435665 TTGATA 17 4435683 4435688 GATATT 4435694 5.006 high homology 3.54E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gttttTTGATAgtttacttctatagTGaGATATTtaatgGcgaca 4437895 4439238 R ytfL ytfLp1 Sigma70 4439478 4439483 CTACAA 16 4439456 4439461 TATATT 4439450 2.463 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggcCTACAAaatcgtccaaattcaaTATATTgcaagGactgc 4437895 4439238 R ytfL ytfLp3 Sigma70 4439374 4439379 CTGGCG 19 4439349 4439354 TATACT 4439344 2.77 poor homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accctCTGGCGgctttacagtaccttacgcTATACTagccActgaa 4437895 4439238 R ytfL ytfLp4 Sigma70 4439305 4439310 TTTCAA 18 4439281 4439286 TAATCA 4439275 2.978 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcggcTTTCAAtgtgtatttcacacaaatTAATCAacttcCccttc 4447985 4448941 F ytfQ ytfQp1 Sigma70 4447875 4447880 TTTACT 21 4447902 4447907 CAATCT 4447913 2.033 poor homology 0.000599149 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttttaTTTACTtttttgaagtgtgatgtaacgCAATCTgttacAtaacg 4447985 4448941 F ytfQ ytfQp2 Sigma70 4447884 4447889 TTGAAG 20 4447910 4447915 TACATA 4447920 2.414 poor homology 0.000143382 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cttttTTGAAGtgtgatgtaacgcaatcTGtTACATAacgaAttgtc 4447985 4448941 F ytfQ ytfQp3 Sigma70 4447829 4447834 TTCATA 18 4447853 4447858 CAAACT 4447863 2.758 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTCATAgtgagatgaaagcgattaCAAACTtgtgAttaac 4447985 4448941 F ytfQ ytfQp4 Sigma70 4447840 4447845 ATGAAA 19 4447865 4447870 TAACGT 4447875 2.9 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgagATGAAAgcgattacaaacttgtgatTAACGTtttaTttact 4447985 4448941 F ytfQ ytfQp5 Sigma70 4447850 4447855 TTACAA 21 4447877 4447882 TACTTT 4447888 2.953 poor homology 0.000312783 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgaTTACAAacttgtgattaacgttttattTACTTTtttgaAgtgtg 4447985 4448941 F ytfQ ytfQp7 Sigma70 4447764 4447769 TTTCCT 21 4447791 4447796 TATACA 4447802 3.173 good homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTTCCTttttcaccagttttaagacggTATACAgagcaGgaaaa 4447985 4448941 F ytfQ ytfQp8 Sigma70 4447850 4447855 TTACAA 17 4447873 4447878 TATTTA 4447885 3.196 good homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgaTTACAAacttgtgattaacgtttTATTTActttttTgaagt 4447985 4448941 F ytfQ ytfQp9 Sigma70 4447828 4447833 TTTCAT 17 4447851 4447856 TACAAA 4447862 3.786 good homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcattTTTCATagtgagatgaaagcgatTACAAActtgtGattaa 4452634 4453632 R fbp fbpp1 Sigma70 4453821 4453826 CTAAAA 20 4453795 4453800 TATCCT 4453789 1.964 poor homology 0.000675539 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattcCTAAAAtatgaatgcgcatacgtcacTATCCTtttttAatctg 4452634 4453632 R fbp fbpp3 Sigma70 4453671 4453676 TTGTTG 16 4453649 4453654 TAAACA 4453643 2.503 poor homology 0.000547581 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taagaTTGTTGcggtcgctttactccaTAAACAttgcaGggaaa 4452634 4453632 R fbp fbpp4 Sigma70 4453707 4453712 TTCACC 15 4453686 4453691 GATTAT 4453680 2.51 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgcgaTTCACCtgagcgcaacatTGaGATTATttgttAagatt 4455337 4455888 R yjgA yjgAp1 Sigma70 4455994 4455999 TTTCAT 18 4455970 4455975 GAGAGT 4455963 2.518 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attacTTTCATtgcaagtgccataatgtaGAGAGTttctctGaagtc 4455337 4455888 R yjgA yjgAp7 Sigma70 4455938 4455943 TTTTCA 17 4455915 4455920 TAACAT 4455909 4.006 good homology 0.000319102 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence accgtTTTTCAgtgcgcatcttaacTGgTAACATtagccTctttt 4455337 4455888 R yjgA yjgAp8 Sigma70 4456071 4456076 TTGCCT 21 4456044 4456049 GAAACT 4456038 4.053 high homology 4.63E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgatTTGCCTgaggccaactccagcgcagtgGAAACTgcttcTtccag 4469009 4469470 R pyrI pyrIp1 Sigma70 4469602 4469607 TTGATG 19 4469577 4469582 TAAAAC 4469571 2.2 poor homology 0.000349153 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgtgTTGATGagattgcgacggatgtTGaTAAAACgccacAcgcct 4469009 4469470 R pyrI pyrIp2 Sigma70 4469602 4469607 TTGATG 17 4469579 4469584 GATAAA 4469573 3.646 good homology 0.000269215 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtgTTGATGagattgcgacggatgttGATAAAacgccAcacgc 4472147 4472740 F yjgJ yjgJp1 Sigma70 4471982 4471987 TTGGCC 20 4472008 4472013 TACGAT 4472018 2.764 poor homology 0.000294568 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtacaTTGGCCccatcggtgacgaaacgacgTACGATagcgGcaccg 4472147 4472740 F yjgJ yjgJp2 Sigma70 4471954 4471959 TTTCGA 18 4471978 4471983 TACATT 4471990 2.918 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcatcTTTCGAccccgcataggtgaatcgTACATTggccccAtcggt 4472147 4472740 F yjgJ yjgJp4 Sigma70 4472086 4472091 TTGATT 17 4472109 4472114 TACAAA 4472119 4.776 high homology 5.60E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actccTTGATTtattatgtaacatgcatTACAAAactgTtttaa 4472885 4473337 F tabA tabAp1 Sigma70 4472801 4472806 TTCACG 19 4472826 4472831 GATTAT 4472838 2.45 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaTTCACGcgttaaggctagcggaattGATTATcttttcGtataa 4472885 4473337 F tabA tabAp3 Sigma70 4472697 4472702 CTGCAA 15 4472718 4472723 TAAAAA 4472729 2.85 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacagCTGCAAtggcgggggaagcgaTAAAAActattCttgag 4472885 4473337 F tabA tabAp4 Sigma70 4472824 4472829 TTGATT 17 4472847 4472852 TAGAAA 4472857 4.506 high homology 7.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggaaTTGATTatcttttcgtataacgaTAGAAAtgaaAcgttg 4473460 4475274 F yjgL yjgLp1 Sigma70 4473376 4473381 TTTGTG 17 4473399 4473404 TATTTT 4473410 3.136 poor homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gcgagTTTGTGaaaagagcgtttttTGaTATTTTtttgtGagtaa 4473460 4475274 F yjgL yjgLp2 Sigma70 4473391 4473396 TTTTTT 16 4473413 4473418 TAAAAT 4473424 3.643 good homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagcgTTTTTTgatatttttttgtgagTAAAATttgtaAtgctt 4477057 4477560 R yjgM yjgMp1 Sigma70 4477638 4477643 TTACTT 19 4477613 4477618 TAAGAA 4477608 1.86 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctttaTTACTTtataagtcgcttgcgtacgTAAGAAgagaGtggta 4477057 4477560 R yjgM yjgMp2 Sigma70 4477634 4477639 TTTATA 21 4477607 4477612 GAGAGT 4477600 2.333 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attacTTTATAagtcgcttgcgtacgtaagaaGAGAGTggtattAaacaa 4477057 4477560 R yjgM yjgMp3 Sigma70 4477742 4477747 TTCCCT 21 4477715 4477720 TAACTT 4477710 2.443 poor homology 0.000575656 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaaaTTCCCTgaattaaaaaatccattgataTAACTTatatAtacag 4477057 4477560 R yjgM yjgMp4 Sigma70 4477622 4477627 TTGCGT 20 4477596 4477601 TAAACA 4477590 2.574 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTGCGTacgtaagaagagagtggtatTAAACAaatgtAtaatt 4477057 4477560 R yjgM yjgMp5 Sigma70 4477722 4477727 ATTGAT 21 4477695 4477700 TAAAAT 4477689 2.633 poor homology 0.000158461 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatccATTGATataacttatatatacagacagTAAAATgttctGccacg 4477057 4477560 R yjgM yjgMp6 Sigma70 4477597 4477602 TTAAAC 16 4477575 4477580 TATTTT 4477569 2.943 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tggtaTTAAACaaatgtataattacttTATTTTtattgGgttaa 4477057 4477560 R yjgM yjgMp7 Sigma70 4477756 4477761 TTGAGC 18 4477732 4477737 TAAAAA 4477727 3.058 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ataacTTGAGCcataaaaattccctgaatTAAAAAatccAttgat 4477057 4477560 R yjgM yjgMp8 Sigma70 4477733 4477738 TTAAAA 21 4477706 4477711 TATACA 4477701 3.653 good homology 0.000112788 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgaaTTAAAAaatccattgatataacttataTATACAgacaGtaaaa 4477057 4477560 R yjgM yjgMp10 Sigma70 4477721 4477726 TTGATA 15 4477700 4477705 GACAGT 4477694 3.75 good homology 4.97E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atccaTTGATAtaacttatatatacaGACAGTaaaatGttctg 4477057 4477560 R yjgM yjgMp11 Sigma70 4477622 4477627 TTGCGT 17 4477599 4477604 TATTAA 4477594 3.836 good homology 0.000367055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence gtcgcTTGCGTacgtaagaagagagTGgTATTAAacaaAtgtat 4477753 4478949 F yjgN yjgNp1 Sigma70 4477563 4477568 TTTAAC 21 4477590 4477595 TACATT 4477601 2.983 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catagTTTAACccaataaaaataaagtaattaTACATTtgtttAatacc 4477753 4478949 F yjgN yjgNp3 Sigma70 4477678 4477683 TTGTAA 15 4477699 4477704 TACTGT 4477709 3.86 good homology 8.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtaTTGTAAcgtggcagaacatttTACTGTctgtAtatat 4477753 4478949 F yjgN yjgNp4 Sigma70 4477613 4477618 TTCTTA 17 4477636 4477641 TAAAGT 4477647 4.106 high homology 0.000224867 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctctcTTCTTAcgtacgcaagcgacttaTAAAGTaataaAgtttt 4477753 4478949 F yjgN yjgNp6 Sigma70 4477556 4477561 TTCATA 17 4477579 4477584 TAAAGT 4477589 4.976 high homology 6.98E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgttaTTCATAgtttaacccaataaaaaTAAAGTaattAtacat 4477753 4478949 F yjgN yjgNp7 Sigma70 4477652 4477657 TTGCCA 18 4477676 4477681 TATTGT 4477687 5.228 high homology 1.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtttTTGCCAgcctattactgataagagTATTGTaacgtGgcaga 4484241 4485341 F lptF lptFp1 Sigma70 4484043 4484048 ATGTCC 21 4484070 4484075 TAATCT 4484080 1.973 poor homology 0.000703108 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aactcATGTCCgctgttgcgatgacttcgTGtTAATCTtaacGttatt 4484241 4485341 F lptF lptFp3 Sigma70 4483993 4483998 TTAAAG 20 4484019 4484024 TAGAAT 4484030 3.214 good homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaatcTTAAAGacaacggcggtggctacagaTAGAATtgcaaGctttc 4484241 4485341 F lptF lptFp5 Sigma70 4484175 4484180 ATGACG 19 4484200 4484205 TAAAAT 4484211 3.67 good homology 6.31E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aataaATGACGtttaagccatgaaacaagcTAAAATcctgcAaaaga 4484241 4485341 F lptF lptFp6 Sigma70 4484112 4484117 CTGAGA 15 4484133 4484138 TATAAT 4484145 3.76 good homology 3.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaatCTGAGAggtgaatccgttgagTATAATtatcttAgcgac 4484241 4485341 F lptF lptFp7 Sigma70 4484053 4484058 TTGCGA 17 4484076 4484081 TAACGT 4484086 4.066 high homology 0.000251014 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgctgTTGCGAtgacttcgtgttaatctTAACGTtattAcggca 4486584 4488086 R yjgR yjgRp1 Sigma70 4488157 4488162 TTATTT 15 4488136 4488141 TATTCT 4488131 3.24 good homology 0.00018046 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttaggTTATTTtctcttcattacacgTATTCTctttGccgga 4486584 4488086 R yjgR yjgRp2 Sigma70 4488180 4488185 TTATCA 18 4488156 4488161 TATTTT 4488149 3.298 good homology 0.000352662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cagatTTATCAcggcaacacgctttaggtTATTTTctcttcAttaca 4486584 4488086 R yjgR yjgRp3 Sigma70 4488134 4488139 TTCTCT 15 4488113 4488118 TATACT 4488108 3.93 good homology 4.19E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgtaTTCTCTttgccggacgttgccTATACTccagGcagga 4493213 4494232 R yjgB yjgBp1 Sigma70 4494330 4494335 TTTTCA 20 4494304 4494309 TAACCT 4494298 2.484 poor homology 0.000426457 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaTTTTCAgcattgcatacagcgatgtgTAACCTttgtcAcactc 4493213 4494232 R yjgB yjgBp5 Sigma70 4494321 4494326 TTGCAT 21 4494294 4494299 CACACT 4494289 3.043 poor homology 9.52E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cagcaTTGCATacagcgatgtgtaaccttTGtCACACTccagGcaccc 4493213 4494232 R yjgB yjgBp6 Sigma70 4494357 4494362 TTGCTC 17 4494334 4494339 GAAATT 4494329 3.506 good homology 0.000490542 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccagcTTGCTCgcacctcgctaagtgctGAAATTttcaGcattg 4496295 4496660 F insC insCp1 Sigma70 4496216 4496221 CTGAAT 21 4496243 4496248 TAAATA 4496253 2.013 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccccCTGAATctccagacaaccaatatcactTAAATAagtgAtagtc 4496295 4496660 F insC insCp2 Sigma70 4496180 4496185 CTGCAG 18 4496204 4496209 TAGACT 4496215 2.878 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtgCTGCAGggatttgatggtcccttgTAGACTggcccCctgaa 4496295 4496660 F insC insCp3 Sigma70 4496091 4496096 TTCATT 16 4496113 4496118 TAAAAA 4496123 2.943 poor homology 0.000335463 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggttaTTCATTatttatatacattcaaTAAAAAagtaAcctca 4496295 4496660 F insC insCp5 Sigma70 4496108 4496113 TTCAAT 15 4496129 4496134 TAAAAA 4496140 3.42 good homology 0.000220415 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atacaTTCAATaaaaaagtaacctcaTAAAAAatcctGtactc 4496295 4496660 F insC insCp7 Sigma70 4496098 4496103 TTTATA 17 4496121 4496126 TAACCT 4496132 4.456 high homology 0.000169951 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cattaTTTATAtacattcaataaaaaagTAACCTcataaAaaatc 4499283 4499612 F yjgZ yjgZp2 Sigma70 4499060 4499065 TTGCAC 18 4499084 4499089 CATGCT 4499096 2.518 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcttgTTGCACgatcgatcaattgttatgCATGCTgacaccAcaacc 4499283 4499612 F yjgZ yjgZp3 Sigma70 4499135 4499140 TTCCCG 21 4499162 4499167 TATTGT 4499173 2.923 poor homology 0.000378233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctctcTTCCCGgtcatcgtcggccttccccgtTATTGTggcgtGtcagc 4499283 4499612 F yjgZ yjgZp4 Sigma70 4499057 4499062 TTGTTG 17 4499080 4499085 TATGCA 4499091 2.976 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence ttctcTTGTTGcacgatcgatcaatTGtTATGCAtgctgAcacca 4500126 4501454 R insG insGp1 Sigma70 4501584 4501589 TTGAGC 16 4501562 4501567 TAGTTT 4501556 2.073 poor homology 0.000921047 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence acaaaTTGAGCatatttttgtagcTGaTAGTTTgttacAaacac 4500126 4501454 R insG insGp3 Sigma70 4501603 4501608 TTGTTA 18 4501579 4501584 CATATT 4501573 2.778 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgttTTGTTActgatgtcacaaattgagCATATTtttgtAgctga 4500126 4501454 R insG insGp4 Sigma70 4501509 4501514 TTGACC 15 4501488 4501493 TAAGAA 4501482 2.99 poor homology 0.00019549 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcagTTGACCgatccagtggctgtgTAAGAAtccggAaacgc 4500126 4501454 R insG insGp6 Sigma70 4501603 4501608 TTGTTA 20 4501577 4501582 TATTTT 4501572 3.474 good homology 8.78E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgttTTGTTActgatgtcacaaattgagcaTATTTTtgtaGctgat 4502081 4503298 F yjhB yjhBp1 Sigma70 4501900 4501905 TTTTAT 16 4501922 4501927 TATGTT 4501933 2.633 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atcagTTTTATctttcatagagtgaaaTATGTTaagaaGaaatg 4502081 4503298 F yjhB yjhBp3 Sigma70 4502011 4502016 TTTCTG 18 4502035 4502040 TAATAT 4502047 3.498 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattaTTTCTGgatattgttgaggctcccTAATATttacttTaaggg 4502081 4503298 F yjhB yjhBp4 Sigma70 4501993 4501998 TTGAAG 18 4502017 4502022 GATATT 4502028 3.948 good homology 7.26E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtatTTGAAGacaatataattatttctgGATATTgttgaGgctcc 4502081 4503298 F yjhB yjhBp5 Sigma70 4501993 4501998 TTGAAG 20 4502019 4502024 TATTGT 4502029 4.134 high homology 2.47E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtatTTGAAGacaatataattatttctggaTATTGTtgagGctccc 4505489 4506640 R insI insIp1 Sigma70 4506861 4506866 TTATCT 19 4506836 4506841 GACAAT 4506830 2.12 poor homology 0.000884932 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccgaTTATCTcttcctgaaggcactttagGACAATgggttAccgcc 4505489 4506640 R insI insIp2 Sigma70 4506737 4506742 ATGAAG 21 4506710 4506715 TAAAAA 4506704 2.463 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaATGAAGctcgccttgagcgagatatatTAAAAAaagcaActgta 4505489 4506640 R insI insIp3 Sigma70 4506737 4506742 ATGAAG 18 4506713 4506718 TATTAA 4506707 2.568 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gttaaATGAAGctcgccttgagcgagataTATTAAaaaaaGcaact 4505489 4506640 R insI insIp5 Sigma70 4506741 4506746 TTAAAT 20 4506715 4506720 TATATT 4506709 3.904 good homology 4.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggcgTTAAATgaagctcgccttgagcgagaTATATTaaaaaAagcaa 4508713 4509480 R fecE fecEp2 Sigma70 4509588 4509593 TTGCCG 16 4509566 4509571 TATTCA 4509559 3.033 poor homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtggTTGCCGatctgctggcgagaatTATTCAtcccccActgga 4508713 4509480 R fecE fecEp5 Sigma70 4509691 4509696 TTTATT 17 4509668 4509673 TATGAT 4509662 4.986 high homology 6.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttagcTTTATTggtctcgtggtgccgcaTATGATgcgtaGcatca 4514787 4515740 R fecR fecRp1 Sigma70 4515845 4515850 CTGACA 17 4515822 4515827 CAAACT 4515817 3.106 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggtCTGACAtacagcgagattgcgcaCAAACTcggtGtttcc 4516550 4516825 F insA insAp1 Sigma70 4516513 4516518 CTGATT 19 4516538 4516543 TAAGGT 4516548 2.42 poor homology 0.000642592 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acttaCTGATTtagtgtatgatggtgatttTAAGGTgcttGcgtgg 4516550 4516825 F insA insAp8 Sigma70 4516354 4516359 TTAACA 20 4516380 4516385 TAAGGT 4516390 3.144 good homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catttTTAACAtgttgtttttctaagtgttaTAAGGTaggtAtaaaa 4516550 4516825 F insA insAp10 Sigma70 4516502 4516507 CTGCCA 16 4516524 4516529 TATGAT 4516534 3.453 good homology 0.000140543 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taatgCTGCCAacttactgatttagtgTATGATggtgAtttta 4516550 4516825 F insA insAp11 Sigma70 4516362 4516367 TTGTTT 21 4516389 4516394 TATAAA 4516400 3.583 good homology 0.000144823 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acatgTTGTTTttctaagtgttataaggtaggTATAAAatgggAtggag 4516550 4516825 F insA insAp13 Sigma70 4516434 4516439 ATGACT 15 4516455 4516460 TATTAT 4516465 4.19 high homology 5.55E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tcagaATGACTcatgatgtggtcTGcTATTATtgacAtcctc 4516550 4516825 F insA insAp14 Sigma70 4516367 4516372 TTTCTA 18 4516391 4516396 TAAAAT 4516402 4.818 high homology 2.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgttTTTCTAagtgttataaggtaggtaTAAAATgggatGgagcc 4517361 4518347 R yjhU yjhUp2 Sigma70 4518406 4518411 ATCAAC 18 4518382 4518387 TAAGAT 4518377 2.048 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tctgcATCAACtctccgggtaaacagggtTAAGATgagcAtttcc 4517361 4518347 R yjhU yjhUp3 Sigma70 4518458 4518463 TTCATG 19 4518433 4518438 TATAAA 4518427 2.61 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTCATGtaaaagaataaaatatctgTATAAAatcatGccact 4517361 4518347 R yjhU yjhUp4 Sigma70 4518470 4518475 ATGCTG 20 4518444 4518449 TAAAAT 4518439 2.904 poor homology 0.000101039 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atggtATGCTGgtttatttcatgtaaaagaaTAAAATatctGtataa 4517361 4518347 R yjhU yjhUp6 Sigma70 4518560 4518565 TTGATG 16 4518538 4518543 TACTGT 4518531 3.493 good homology 0.000125903 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatgcTTGATGggtgtattctcagtaaTACTGTaaagccGgagca 4517361 4518347 R yjhU yjhUp7 Sigma70 4518571 4518576 TTCGAT 15 4518550 4518555 TATTCT 4518544 3.57 good homology 0.000127168 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaaccTTCGATtatgcttgatgggtgTATTCTcagtaAtactg 4517361 4518347 R yjhU yjhUp9 Sigma70 4518458 4518463 TTCATG 21 4518431 4518436 TAAAAT 4518424 3.803 good homology 6.01E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttatTTCATGtaaaagaataaaatatctgtaTAAAATcatgccActggc 4518694 4520043 R yjhF yjhFp1 Sigma70 4520182 4520187 TTGGCG 16 4520160 4520165 TATGAA 4520154 2.513 poor homology 0.000495472 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caaaaTTGGCGcggctttgcgcgatttTATGAAtaaaaActgaa 4518694 4520043 R yjhF yjhFp2 Sigma70 4520286 4520291 TTTACT 19 4520261 4520266 GATGAT 4520255 2.92 poor homology 0.000283018 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence caggaTTTACTtcccgatcctgaattgccaGATGATacccgGctatg 4518694 4520043 R yjhF yjhFp3 Sigma70 4520103 4520108 CTGCAT 21 4520076 4520081 GATAAT 4520070 2.973 poor homology 0.000356206 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgactCTGCATcattcgttatttgctcagtcgGATAATgatggGtcgct 4518694 4520043 R yjhF yjhFp4 Sigma70 4520159 4520164 ATGAAT 18 4520135 4520140 TAAAAA 4520129 3.388 good homology 0.000315927 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attttATGAATaaaaactgaaagcataaaTAAAAAcatccAgacac 4520150 4522117 R yjhG yjhGp2 Sigma70 4522193 4522198 TTGAAG 17 4522170 4522175 GATAAA 4522165 3.956 good homology 0.000122182 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattcTTGAAGcatctgaagaagcaaaaGATAAAgtccAcgtgc 4520150 4522117 R yjhG yjhGp3 Sigma70 4522193 4522198 TTGAAG 19 4522168 4522173 TAAAGT 4522163 4.65 high homology 1.42E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gattcTTGAAGcatctgaagaagcaaaagaTAAAGTccacGtgctg 4524129 4524911 R sgcR sgcRp1 Sigma70 4525018 4525023 CTGGCA 17 4524995 4525000 TATGGT 4524989 3.436 good homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaCTGGCAgcagctggggcgcaacaTATGGTgattgGgcgcg 4530460 4531206 R yjhP yjhPp1 Sigma70 4531279 4531284 ATGAAA 21 4531252 4531257 CAATCT 4531247 1.883 poor homology 0.000739157 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccctgATGAAAccggagcactgacgtgaataaCAATCTtgttGtgtcc 4530460 4531206 R yjhP yjhPp2 Sigma70 4531279 4531284 ATGAAA 18 4531255 4531260 TAACAA 4531250 2.528 poor homology 0.000611253 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccctgATGAAAccggagcactgacgtgaaTAACAAtcttGttgtg 4531262 4531807 R yjhQ yjhQp1 Sigma70 4531869 4531874 ATCGAA 19 4531844 4531849 TAAAGT 4531839 2.01 poor homology 0.000531398 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccctATCGAAtcaacaccaccgagctgaaTAAAGTtcgcGctcag 4531262 4531807 R yjhQ yjhQp2 Sigma70 4531921 4531926 TTCAAA 20 4531895 4531900 TATCAA 4531890 2.364 poor homology 0.000300519 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtcTTCAAAaaactcaaaaccaaaaaactTATCAAgtccGtcaat 4531262 4531807 R yjhQ yjhQp4 Sigma70 4531849 4531854 CTGAAT 18 4531825 4531830 GATAAT 4531819 3.628 good homology 0.000238772 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgagCTGAATaaagttcgcgctcagctcGATAATcgctaAggaga 4534637 4535617 R nanS nanSp2 Sigma70 4535820 4535825 TTATCG 19 4535795 4535800 TATCAT 4535788 2.38 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtgaaTTATCGcaaggtcgggcctacggagTATCATtgccctGgaata 4534637 4535617 R nanS nanSp3 Sigma70 4535725 4535730 TTCAGT 16 4535703 4535708 GATAAT 4535696 2.653 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acggaTTCAGTtttgatcactgtgaagGATAATaaagtcAcagta 4534637 4535617 R nanS nanSp4 Sigma70 4535719 4535724 TTTGAT 15 4535698 4535703 TAAAGT 4535693 3.66 good homology 0.00013776 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcagtTTTGATcactgtgaaggataaTAAAGTcacaGtacaa 4535682 4536788 R nanM nanMp1 Sigma70 4536975 4536980 ATGCAA 20 4536949 4536954 GAAAAT 4536942 2.754 poor homology 0.000291637 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgctATGCAAaccataagaaatgggcgacgGAAAATgcatttGttcta 4535682 4536788 R nanM nanMp2 Sigma70 4536825 4536830 TTGGTG 17 4536802 4536807 TAGACA 4536797 2.986 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgcaTTGGTGtgtcatttaaactgtagTAGACAggagAcagtc 4535682 4536788 R nanM nanMp4 Sigma70 4536922 4536927 ATGACG 19 4536897 4536902 TAGAAT 4536890 3.04 poor homology 0.000263884 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accatATGACGcccgatattacgccatacaTAGAATatgactAccttg 4553513 4554343 R yjiC yjiCp1 Sigma70 4554498 4554503 TTTGAT 16 4554476 4554481 TACCCT 4554470 2.433 poor homology 0.000623601 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtttTTTGATactttagagtgtttccTACCCTttaatAtcacc 4553513 4554343 R yjiC yjiCp5 Sigma70 4554481 4554486 TTTCCT 19 4554456 4554461 TAGAGT 4554451 3.19 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gagtgTTTCCTaccctttaatatcaccgtgTAGAGTtgatAtcact 4553513 4554343 R yjiC yjiCp7 Sigma70 4554558 4554563 TTCCAA 20 4554532 4554537 TAAATT 4554527 3.444 good homology 0.000104117 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaaaTTCCAAttagtaataagatatgctttTAAATTgcatGcaaat 4553513 4554343 R yjiC yjiCp8 Sigma70 4554403 4554408 TTTACT 15 4554382 4554387 TATTTT 4554376 3.84 good homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctcttTTTACTacagaaaaatttatcTATTTTtctaaAcatca 4555401 4556312 R qseD qseDp1 Sigma70 4556531 4556536 TTTCCT 19 4556506 4556511 GAAATT 4556500 2.37 poor homology 0.000542133 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gccggTTTCCTtaacctgaccgggaaaggcGAAATTctgccAggcaa 4555401 4556312 R qseD qseDp4 Sigma70 4556367 4556372 TTGTCA 16 4556345 4556350 TAGAAT 4556340 4.443 high homology 2.84E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacggTTGTCAgccgcccgaatggacgTAGAATgcccGcaagg 4556377 4557549 R iadA iadAp1 Sigma70 4557600 4557605 TTAACG 19 4557575 4557580 TATGCA 4557570 1.89 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgtgaTTAACGcattgctgtcgatctgggtTATGCAgcttAttgtt 4556377 4557549 R iadA iadAp2 Sigma70 4557639 4557644 ATGCCA 19 4557614 4557619 TACGGT 4557609 2.41 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtgaATGCCAaatattacccgcatatcatTACGGTctgcGtgatt 4556377 4557549 R iadA iadAp3 Sigma70 4557592 4557597 TTGCTG 20 4557566 4557571 TATTGT 4557560 3.534 good homology 9.90E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgcaTTGCTGtcgatctgggttatgcagctTATTGTttaacAaggag 4556377 4557549 R iadA iadAp4 Sigma70 4557643 4557648 GTGAAT 17 4557620 4557625 TATCAT 4557615 3.556 good homology 0.000439444 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgaaGTGAATgccaaatattacccgcaTATCATtacgGtctgc 4558953 4559507 F kptA kptAp1 Sigma70 4558723 4558728 TTGTGT 20 4558749 4558754 GAAAAT 4558760 2.364 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tttttTTGTGTttgtgtgttgcttgagccagGAAAATtcctgGaactg 4558953 4559507 F kptA kptAp2 Sigma70 4558824 4558829 TTTTTT 15 4558845 4558850 TACGCT 4558856 2.43 poor homology 0.000808767 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atgcgTTTTTTgcatagcggaaaaatTACGCTgtgtgGaaaag 4558953 4559507 F kptA kptAp3 Sigma70 4558773 4558778 TTATCA 16 4558795 4558800 GAAAAT 4558805 2.743 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaccTTATCAgccatgtgggtatgggGAAAATgcaaGtatgt 4558953 4559507 F kptA kptAp5 Sigma70 4558908 4558913 ATGACA 16 4558930 4558935 GAAAAT 4558941 3.273 good homology 0.00022941 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgacaATGACAtcagtaaataaaaacaGAAAATccaggGacgaa 4558953 4559507 F kptA kptAp7 Sigma70 4558880 4558885 TTGCAG 18 4558904 4558909 GACAAT 4558916 3.798 good homology 0.000117391 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgagTTGCAGaaaattcataaaccaagtGACAATgacatcAgtaaa 4559520 4560698 R yjiJ yjiJp1 Sigma70 4560921 4560926 TTGGCG 21 4560894 4560899 TAACCA 4560888 1.803 poor homology 0.000902809 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cctggTTGGCGaggttatcggtgaaatgtcacTAACCAaaggcAgtcga 4559520 4560698 R yjiJ yjiJp2 Sigma70 4560843 4560848 TTGCGA 16 4560821 4560826 TATTTA 4560816 2.243 poor homology 0.000520875 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aggggTTGCGAtggatgcctctggtaaTATTTAtatcGttagc 4559520 4560698 R yjiJ yjiJp3 Sigma70 4560838 4560843 ATGGAT 17 4560815 4560820 TATCGT 4560809 3.286 good homology 0.000777055 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttgcgATGGATgcctctggtaatatttaTATCGTtagcgAaccaa 4560766 4561626 R yjiK yjiKp1 Sigma70 4561714 4561719 TTGCAC 20 4561688 4561693 TAAGGA 4561681 1.744 poor homology 0.000500451 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgcaTTGCACattacggggtttctccgcgtTAAGGAttcattAaggtc 4560766 4561626 R yjiK yjiKp2 Sigma70 4561699 4561704 TTTCTC 16 4561677 4561682 TAAGGT 4561672 2.133 poor homology 0.000911882 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cggggTTTCTCcgcgttaaggattcatTAAGGTcgctAcgtat 4560766 4561626 R yjiK yjiKp6 Sigma70 4561689 4561694 TTAAGG 19 4561664 4561669 TATACT 4561658 3.12 poor homology 7.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgcgTTAAGGattcattaaggtcgctacgTATACTtctcgAtatct 4561945 4562712 R yjiL yjiLp1 Sigma70 4562935 4562940 CTGAAA 21 4562908 4562913 GAATAT 4562901 2.613 poor homology 0.000485661 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcgcCTGAAAatgctcagccagatggtggagGAATATcaggtcGatggc 4563989 4565269 R yjiN yjiNp4 Sigma70 4565301 4565306 TTGCGC 18 4565277 4565282 TATTCT 4565272 3.688 good homology 0.000149233 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gatttTTGCGCgatccggccgtcaggctcTATTCTtaacGttatg 4568185 4569597 R yjiR yjiRp1 Sigma70 4569694 4569699 TTTATT 16 4569672 4569677 TAAAAC 4569667 1.813 poor homology 0.000833397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttactTTTATTtaacatacagacaggtTAAAACagcaTctgca 4568185 4569597 R yjiR yjiRp3 Sigma70 4569707 4569712 TTCAAA 18 4569683 4569688 TACAGA 4569676 2.938 poor homology 0.000338834 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acagaTTCAAAtattacttttatttaacaTACAGAcaggttAaaaca 4568185 4569597 R yjiR yjiRp4 Sigma70 4569720 4569725 TTCACA 16 4569698 4569703 TACTTT 4569692 3.043 poor homology 0.000241172 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcagTTCACAatacagattcaaatatTACTTTtatttAacata 4568185 4569597 R yjiR yjiRp5 Sigma70 4569673 4569678 TTAAAA 21 4569646 4569651 TAGCCT 4569640 3.063 poor homology 0.0002139 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaggTTAAAAcagcatctgcatccggtttttTAGCCTcatctGtaccg 4569774 4569938 F yjiS yjiSp2 Sigma70 4569675 4569680 TTAACC 21 4569702 4569707 TAATAT 4569712 3.383 good homology 0.000187825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgttTTAACCtgtctgtatgttaaataaaagTAATATttgaAtctgt 4569774 4569938 F yjiS yjiSp3 Sigma70 4569691 4569696 TTAAAT 20 4569717 4569722 TATTGT 4569728 3.584 good homology 9.33E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtatgTTAAATaaaagtaatatttgaatctgTATTGTgaactGccaga 4569774 4569938 F yjiS yjiSp4 Sigma70 4569708 4569713 TTGAAT 18 4569732 4569737 GAAGGT 4569743 3.638 good homology 3.64E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aatatTTGAATctgtattgtgaactgccaGAAGGTggatgAtgaag 4574935 4575981 R mcrC mcrCp4 Sigma70 4576160 4576165 TTGGGA 17 4576137 4576142 CATAGT 4576130 2.976 poor homology 0.000876127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatccTTGGGAaaggattccgcattgggCATAGTtacttcTgctgt 4584972 4585886 F mrr mrrp1 Sigma70 4584822 4584827 TTTAAG 18 4584846 4584851 TAGCTT 4584857 2.178 poor homology 0.00096827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaataTTTAAGgcccataacatctcatctTAGCTTtctgtAccttt 4584972 4585886 F mrr mrrp2 Sigma70 4584889 4584894 CTGACT 19 4584914 4584919 TATTTT 4584924 2.95 poor homology 0.000297529 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agcaaCTGACTcatttctaacgtgttcgtcTATTTTtgtaGtgcta 4584972 4585886 F mrr mrrp3 Sigma70 4584761 4584766 TTCAAA 21 4584788 4584793 TATTAA 4584800 3.223 good homology 0.000193545 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence aggaaTTCAAAattggatttattcatcatTGtTATTAAtccattGctgtg 4585932 4586888 R yjiA yjiAp1 Sigma70 4587119 4587124 TTTGTT 15 4587098 4587103 TATGTT 4587092 2.59 poor homology 0.000682328 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggggcTTTGTTcttatcagagtgaacTATGTTtggtaActtag 4585932 4586888 R yjiA yjiAp3 Sigma70 4587112 4587117 TTATCA 17 4587089 4587094 TAACTT 4587083 3.116 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence tgttcTTATCAgagtgaactatgttTGgTAACTTaggacAggcaa 4587152 4589302 R yjiY yjiYp1 Sigma70 4589456 4589461 TTACAT 20 4589430 4589435 TATTTA 4589425 1.674 poor homology 0.000754089 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accgcTTACATccctaaaataaccactcagtTATTTAccttActtta 4591384 4592745 R yjjL yjjLp1 Sigma70 4592988 4592993 ATCCAT 16 4592966 4592971 TATGCT 4592960 2.173 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence attcgATCCATtaatgagaacacgcgtTATGCTcattaAgtacg 4591384 4592745 R yjjL yjjLp2 Sigma70 4592903 4592908 ATAAAT 21 4592876 4592881 TATGCT 4592871 2.573 poor homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aaaagATAAATaccgggaaattcccgcttaccTATGCTcacaAtcagt 4591384 4592745 R yjjL yjjLp3 Sigma70 4592881 4592886 TTACCT 19 4592856 4592861 TAAAAA 4592849 2.89 poor homology 0.000332125 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cccgcTTACCTatgctcacaatcagtcgacTAAAAAtgttttTgtgag 4591384 4592745 R yjjL yjjLp5 Sigma70 4592787 4592792 ATGCAC 15 4592766 4592771 TAAAAT 4592760 3.54 good homology 8.61E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtaATGCACaattacgtaaacaatTAAAATtataaAtacag 4592960 4593874 R yjjM yjjMp3 Sigma70 4593965 4593970 ATGAAA 15 4593944 4593949 GAAAAT 4593937 3.53 good homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgaaaATGAAAaatggcagcggaacgGAAAATctttttTgtgaa 4594013 4595035 F yjjN yjjNp1 Sigma70 4593828 4593833 ATGACC 20 4593854 4593859 TAAATT 4593865 2.464 poor homology 0.00037447 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaATGACCtggttaatcacattgtggcgTAAATTttgtgAacgac 4595173 4597464 R opgB opgBp1 Sigma70 4597577 4597582 CTAACA 20 4597551 4597556 TAGAAT 4597546 2.214 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aattcCTAACAacatcgcatttttttgacacTAGAATtgcaGcaata 4595173 4597464 R opgB opgBp2 Sigma70 4597615 4597620 GTGACC 21 4597588 4597593 TAAACT 4597581 2.333 poor homology 0.00021605 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggaaGTGACCgtaatcaaaaaagtctgtttaTAAACTaattccTaacaa 4595173 4597464 R opgB opgBp3 Sigma70 4597580 4597585 TTCCTA 18 4597556 4597561 GACACT 4597549 2.858 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actaaTTCCTAacaacatcgcatttttttGACACTagaattGcagca 4595173 4597464 R opgB opgBp7 Sigma70 4597546 4597551 TTGCAG 17 4597523 4597528 TACATT 4597517 4.836 high homology 7.56E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagaaTTGCAGcaatatggcgacgccatTACATTgtgctTctcaa 4597718 4598212 R yjjA yjjAp8 Sigma70 4598260 4598265 ATTAAT 15 4598239 4598244 TATACT 4598233 3.62 good homology 5.49E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agagtATTAATccccgtttctggcggTATACTgcgacAcaatt 4604102 4604188 R leuV leuVp1 Sigma70 4604289 4604294 TTGGTA 20 4604263 4604268 TAGTGT 4604258 2.894 poor homology 0.000175127 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cggaaTTGGTAgacgcgctagcttcaggTGtTAGTGTtcttAcggac 4604102 4604188 R leuV leuVp2 Sigma70 4604323 4604328 TTGATA 15 4604302 4604307 GAAGGT 4604296 3.3 good homology 7.34E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacgTTGATAttgctcgcactgggcGAAGGTggcggAattgg 4604692 4605723 R rsmC rsmCp2 Sigma70 4605805 4605810 TTGTCA 15 4605784 4605789 CAAATT 4605778 2.48 poor homology 0.000266536 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcctgTTGTCAggggcgcaaatatagCAAATTcgtcgAtaccg 4604692 4605723 R rsmC rsmCp3 Sigma70 4605780 4605785 TTCGTC 21 4605753 4605758 TATAAT 4605748 3.173 good homology 5.07E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcaaaTTCGTCgataccgcgccaacatatggcTATAATcgccGccagt 4607437 4609026 F prfC prfCp1 Sigma70 4607391 4607396 TTTCAA 21 4607418 4607423 TACTCA 4607429 2.263 poor homology 0.000505481 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcgtTTTCAAcaagcgcggcgcgatgccgctTACTCAagaagAaagaa 4607437 4609026 F prfC prfCp4 Sigma70 4607347 4607352 TTGCCT 16 4607369 4607374 TAAAAT 4607379 5.453 high homology 3.54E-06 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence actgaTTGCCTcccccccgttgatgggTAAAATagccGcaatt 4610151 4610312 F ytjA ytjAp1 Sigma70 4609937 4609942 TTCTCA 19 4609962 4609967 GAAAGT 4609974 2.04 poor homology 0.000939653 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgaTTCTCAggcacaaagtgaccgtgctGAAAGTatcgccAaagcg 4610151 4610312 F ytjA ytjAp2 Sigma70 4610051 4610056 TTGTCG 17 4610074 4610079 CACACT 4610084 2.786 poor homology 0.000958635 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gaactTTGTCGggaggcgcgatgtgcacCACACTaaaaAtatcg 4610151 4610312 F ytjA ytjAp3 Sigma70 4609960 4609965 CTGAAA 17 4609983 4609988 GATGGT 4609994 3.066 poor homology 0.000746586 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccgtgCTGAAAgtatcgccaaagcggtaGATGGTgtgaaAagcgt 4610434 4611507 F yjjU yjjUp1 Sigma70 4610358 4610363 CTGGCT 20 4610384 4610389 TAAATT 4610395 2.194 poor homology 0.000480828 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggaCTGGCTtttgcggttttagcgaataaTAAATTgcgttActttg 4610434 4611507 F yjjU yjjUp2 Sigma70 4610217 4610222 CTGGCC 20 4610243 4610248 TAAAAT 4610255 2.274 poor homology 0.000161662 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtggtCTGGCCggtaccgctgcaggcgcagcTAAAATtgtcttTgtcgt 4610434 4611507 F yjjU yjjUp3 Sigma70 4610242 4610247 CTAAAA 19 4610267 4610272 TATTCT 4610279 2.72 poor homology 0.000236397 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgcagCTAAAAttgtctttgtcgtcgggatTATTCTgttcctGgtgag 4610434 4611507 F yjjU yjjUp4 Sigma70 4610286 4610291 TTGTTC 18 4610310 4610315 TAGATT 4610320 2.908 poor homology 0.000636198 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgagtTTGTTCatgggccgaaaacgacccTAGATTtcagAccatt 4613538 4615088 R yjjI yjjIp1 Sigma70 4615317 4615322 ATAAAA 18 4615293 4615298 TAGTAT 4615288 2.678 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight,TG extended -10 motif inferred computationally without human oversight weak evidence cgccaATAAAAttcaccttgcgagttTGtTAGTATtctaAcatct 4613538 4615088 R yjjI yjjIp2 Sigma70 4615148 4615153 ATCAAA 20 4615122 4615127 TACAAT 4615116 2.714 poor homology 0.000185956 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcaggATCAAAgtgaacatcacgaaacttctTACAATggcgcAtcacc 4613538 4615088 R yjjI yjjIp4 Sigma70 4615311 4615316 TTCACC 15 4615290 4615295 TATTCT 4615285 3.53 good homology 0.000136389 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence taaaaTTCACCttgcgagtttgttagTATTCTaacaTctact 4619792 4621123 F yjjJ yjjJp1 Sigma70 4619733 4619738 TTTTCA 20 4619759 4619764 TATTCA 4619769 1.884 poor homology 0.000792752 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatacTTTTCAgtgaaatgtgttaataaatcTATTCAagtaTctatt 4619792 4621123 F yjjJ yjjJp2 Sigma70 4619647 4619652 TTGCCT 16 4619669 4619674 GAGACT 4619680 3.393 good homology 8.44E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcgaTTGCCTtgtgaagccggagcggGAGACTgctccGgcttt 4619792 4621123 F yjjJ yjjJp4 Sigma70 4619701 4619706 TTTTCT 21 4619728 4619733 TATACT 4619739 3.973 good homology 3.40E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ttcatTTTTCTctccagcttgaatattttcgcTATACTtttcaGtgaaa 4619792 4621123 F yjjJ yjjJp5 Sigma70 4619696 4619701 TTCATT 17 4619719 4619724 TATTTT 4619729 4.276 high homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence atctaTTCATTtttctctccagcttgaaTATTTTcgctAtactt 4626878 4628545 R yjjK yjjKp1 Sigma70 4628673 4628678 TTTACG 20 4628647 4628652 TACTTT 4628642 2.154 poor homology 0.000581442 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgccgTTTACGccacgttacggacactttttTACTTTtactGcgagg 4626878 4628545 R yjjK yjjKp2 Sigma70 4628721 4628726 ATGCAG 15 4628700 4628705 TAGATT 4628693 2.28 poor homology 0.000949097 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaATGCAGcgtcatgccgcgtaaTAGATTtatgctAaccag 4626878 4628545 R yjjK yjjKp3 Sigma70 4628619 4628624 CTGGGA 18 4628595 4628600 TACACT 4628589 2.378 poor homology 0.000655574 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence accggCTGGGAttaggcggggaaaaaggcTACACTtcgccTttgaa 4626878 4628545 R yjjK yjjKp4 Sigma70 4628757 4628762 TTTCCA 19 4628732 4628737 TAAATA 4628726 2.4 poor homology 0.000448321 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggcttTTTCCAcaagcgcatcctctaagtgTAAATAcatcaAtgcag 4626878 4628545 R yjjK yjjKp5 Sigma70 4628721 4628726 ATGCAG 21 4628694 4628699 TATGCT 4628688 2.833 poor homology 0.000325548 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence catcaATGCAGcgtcatgccgcgtaatagattTATGCTaaccaGtcatt 4626878 4628545 R yjjK yjjKp6 Sigma70 4628584 4628589 TTTGAA 15 4628563 4628568 TAAACA 4628557 2.84 poor homology 0.000457378 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tcgccTTTGAAaactcattatcacgaTAAACAtagagGcgaag 4626878 4628545 R yjjK yjjKp8 Sigma70 4628679 4628684 TTGCCG 16 4628657 4628662 GACACT 4628651 3.113 poor homology 0.000205513 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agtcaTTGCCGtttacgccacgttacgGACACTtttttActttt 4628756 4630693 F slt sltp1 Sigma70 4628547 4628552 TTGGAC 20 4628573 4628578 GATAAT 4628584 3.104 poor homology 0.000182274 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ccacgTTGGACttcgcctctatgtttatcgtGATAATgagttTtcaaa 4628756 4630693 F slt sltp2 Sigma70 4628537 4628542 TTGAGC 18 4628561 4628566 TATGTT 4628571 3.128 poor homology 0.000452827 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acgaaTTGAGCcacgttggacttcgcctcTATGTTtatcGtgata 4628756 4630693 F slt sltp3 Sigma70 4628715 4628720 ATGACG 15 4628736 4628741 TACACT 4628747 3.34 good homology 0.000246044 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcggcATGACGctgcattgatgtattTACACTtagagGatgcg 4631256 4631768 R yjjX yjjXp1 Sigma70 4631808 4631813 TTTCCG 16 4631786 4631791 TAATTT 4631780 2.533 poor homology 0.000587285 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cttttTTTCCGtatactgctgtaacgtTAATTTtctgaGtaatg 4631256 4631768 R yjjX yjjXp2 Sigma70 4631816 4631821 ATGCTT 18 4631792 4631797 TAACGT 4631786 2.548 poor homology 0.000893825 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtaacATGCTTtttttccgtatactgctgTAACGTtaattTtctga 4631256 4631768 R yjjX yjjXp3 Sigma70 4631847 4631852 TTCACC 21 4631820 4631825 TAACAT 4631814 2.803 poor homology 0.000435072 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tgcgtTTCACCgtggcggactaggtatacctgTAACATgctttTtttcc 4631256 4631768 R yjjX yjjXp5 Sigma70 4631823 4631828 CTGTAA 15 4631802 4631807 TATACT 4631796 3.74 good homology 5.02E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tatacCTGTAAcatgctttttttccgTATACTgctgtAacgtt 4631820 4632467 F ytjC ytjCp1 Sigma70 4631669 4631674 ATGCAA 19 4631694 4631699 GAAGAT 4631705 2.19 poor homology 0.000668817 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence aacggATGCAAtatggcaggatccttcgccGAAGATctcgtGaaatg 4631820 4632467 F ytjC ytjCp2 Sigma70 4631740 4631745 TTGGTG 20 4631766 4631771 CATAAT 4631776 2.204 poor homology 0.000553084 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence cgggaTTGGTGgtcgcacagacaacttggtgCATAATcagcAttact 4631820 4632467 F ytjC ytjCp3 Sigma70 4631760 4631765 TTGGTG 18 4631784 4631789 GAAAAT 4631794 3.378 good homology 0.000345679 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence acaacTTGGTGcataatcagcattactcaGAAAATtaacGttaca 4638425 4638565 F yjjY yjjYp1 Sigma70 4638287 4638292 TTACCA 15 4638308 4638313 TAAGAA 4638319 2.51 poor homology 0.00052611 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtgTTACCAactcgtcttcaacgaTAAGAAtgtgcGgggtc 4638425 4638565 F yjjY yjjYp2 Sigma70 4638287 4638292 TTACCA 18 4638311 4638316 GAATGT 4638322 2.608 poor homology 0.000593188 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gcgtgTTACCAactcgtcttcaacgataaGAATGTgcgggGtctgc 4638425 4638565 F yjjY yjjYp3 Sigma70 4638385 4638390 CTGCCT 16 4638407 4638412 TAACAT 4638418 2.723 poor homology 0.000461975 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctgacCTGCCTgatgcatgctgcaaatTAACATgatcgGcgtaa 4638425 4638565 F yjjY yjjYp4 Sigma70 4638234 4638239 TTCGAA 21 4638261 4638266 GAAAAT 4638273 2.893 poor homology 0.000393669 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gtcgcTTCGAAaacatcatagccttccgcttcGAAAATacttttCaacgt 4638425 4638565 F yjjY yjjYp6 Sigma70 4638344 4638349 TTGCCA 19 4638369 4638374 TACAAA 4638381 3.84 good homology 4.41E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ctaaaTTGCCAactaaatcgaaacaggaagTACAAAagtcccTgacct 4638965 4639651 F yjtD yjtDp1 Sigma70 4638735 4638740 ATCCAA 18 4638759 4638764 TATAAA 4638769 2.398 poor homology 0.000930303 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence ggtgaATCCAAttgtcgagatttatttttTATAAAattaTcctaa 4638965 4639651 F yjtD yjtDp3 Sigma70 4638741 4638746 TTGTCG 20 4638767 4638772 TATCCT 4638778 3.024 poor homology 0.000197455 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tccaaTTGTCGagatttattttttataaaatTATCCTaagtaAacaga 4638965 4639651 F yjtD yjtDp4 Sigma70 4638890 4638895 TTGTAA 21 4638917 4638922 GACAGT 4638927 3.053 poor homology 0.000146278 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTGTAAattcgcaccgcgtaataagttGACAGTgatcAcccgg 4638965 4639651 F yjtD yjtDp5 Sigma70 4638866 4638871 TTTTCT 21 4638893 4638898 TAAATT 4638905 3.103 poor homology 0.000280202 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence gggctTTTTCTgcgacttacgttaagaatttgTAAATTcgcaccGcgtaa 4638965 4639651 F yjtD yjtDp6 Sigma70 4638890 4638895 TTGTAA 15 4638911 4638916 TAAGTT 4638921 3.72 good homology 9.05E-05 p < 0.0001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence agaatTTGTAAattcgcaccgcgtaaTAAGTTgacaGtgatc 4638965 4639651 F yjtD yjtDp7 Sigma70 4638797 4638802 TTTTTT 17 4638820 4638825 TACAGT 4638831 3.736 good homology 0.000422213 p < 0.001 Sigma Factor inferred computationally without human oversight,-10 Box inferred computationally without human oversight,-35 Box inferred computationally without human oversight weak evidence tagcaTTTTTTaacaactcaaccgttagTACAGTcaggaAatagt