RegulonDB RegulonDB 11.2: Regulatory NetWork Interactions Report
Regulatory NetWork Interactions Report


Table 1. Summary of differences comparing with the regulatory interactions from Ma.



Alon

Ma

New interactions according by :

346

93

New Regulatory interactions added in RegulonDB and EcoCyc

69

27

Sigma Factor Regulatory interactions added in RegulonDB and EcoCyc

32

22

already curated Regulatory interactions

130

13

already curated sigma factor Regulatory interactions

93


Interactions updated

3





Other kind of regulation


12

Interactions inferred from microarray data


10

Interactions not found in any literature source

19

9

Uri Alon NetWork Interactions.

1. Interactions not found in any literature source

        
TF		operon name

        
Fis		sdhCDAB-b0725-sucABCD

        
FlhDC		fliE

        
FlhDC		fliFGHIJK

        
RpoE		rpoD

        
RpoN		atoC

        
RpoN		nycA

        
RpoN		rtcR

MA NetWork Interactions.

1. Other kind of regulation

        
TF		operon name

        
ryhB		bfr

        
sohA		degP

        
ryhB		ftnA

        
ryhB		fumA

        
luxS		lsrR

        
RnK		ndk

        
hfq		ryhB

        
ryhB		sdhCDAB

        
ryhB		sodB

2. Interactions inferred from microarray data

        
TF		operon name

        
ydeO		appCB

        
ydeO		gadA

        
ydeO		gadBC

        
ydeO		hdeD

        
ydeO		slp

        
gadX		slp

        
evgA		ydeO

        
evgA		yegZ

3. Interactions not found in any literature source

        
TF		operon name

        
rpoS		csgC

        
lsrR		ego

        
hns		evgA

        
EvgA		mdtABCD

        
yhiE		slp

        
gadX		yhiD
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