# Copies and Copyright-Notice # # RegulonDB is free for academic/noncommercial use # # User is not entitled to change or erase data sets of the RegulonDB # database or to eliminate copyright notices from RegulonDB. Furthermore, # User is not entitled to expand RegulonDB or to integrate RegulonDB partly # or as a whole into other databank systems, without prior written consent # from CCG-UNAM. # # Please check the license at http://regulondb.ccg.unam.mx/menu/download/full_version/terms_and_conditions.jsp # # Citation # # Tierrafría, V. H. et al. (2022). RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12, # Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000833. PMID: 35584008. https://doi.org/10.1099/mgen.0.000833 # # # Contact # # Person: RegulonDB Team # Web Page: http://regulondb.ccg.unam.mx/menu/about_regulondb/contact_us/index.jsp # (regulondb@ccg.unam.mx) # # # Release: 11.2 Date: 05/22/2023 # Genome version: U00096.3, Refseq version: NC_000913.3; GI:556503834 # ___________________________________________________________________________ # Created: 06/12/2023 13:38:13 # Columns: # (1) Global condition name # (2) Specific condition (contained in the global condition) name # (3) Control condition name # (4) Experimental Details of the specific condition # (5) Experimental Details of the control condition # (6) Gene affected by the specific condition # (7) Gene expression effect caused by the specific condition # (8) Promoter affected by the condition # (9) Conformation of the transcription factor through which the condition affects the gene expression Aerobiosis/ Anaerobiosis aerobic growth anaerobic growth ndh induced ndhp Aerobiosis/ Anaerobiosis aerobic growth anaerobic growth ndh repressed ndhp Aerobiosis/ Anaerobiosis aerobic growth anaerobic growth oxyR induced oxyRp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis acnA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis acnB repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis adhE induced adhEp1 Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis adhE induced adhEp2 Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis adhE induced FruR Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis adiA induced adiAp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis aegA induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis aldA repressed aldAp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis appY induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis arcA induced ArcA-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis betA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis betT repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis cyaA induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis cydA induced cydAp2 Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis dcuB induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumA repressed ArcA-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumB induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumC repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumC repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumC repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumC repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumC repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis fumC repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hmp repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hyaA induced AppY Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hyaA repressed ArcA-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hyaA repressed Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycA induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycA induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycB induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycC induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycD induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycE induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycF induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycG induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hycH induced hycAp ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hydN induced FhlA-Formate Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hydN induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hyfA induced FhlA-Formate Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis hypF induced FhlA-Formate Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis moaA induced moaAp1 Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis napF induced napFp2 ModE-MoO Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis napF induced napFp2 Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis napF induced napFp2 Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis narG induced narGp NarL-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis narH induced narGp NarL-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis narI induced narGp NarL-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis narJ induced narGp NarL-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis narK induced NarL-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis ndh repressed ndhp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis ndh repressed FNR Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis nfrA not effect Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis nirB induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis nirB induced Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis nrfF induced nrfAp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis nrfF repressed nrfAp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis torA induced torCp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis torA repressed TorR-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis torC induced torCp TorR-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis torC repressed torCp TorR-Phosphorylated Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis torD induced torCp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis tpx repressed tpxp Aerobiosis/ Anaerobiosis anaerobiosis aerobiosis yiaK induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis aegA repressed Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis aidB induced aidBp Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis dcuB induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis dcuB induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis dcuC repressed Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis dmsA induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis dmsB induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis dmsC induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis fumC induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on aerobiosis hyaA induced Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on microaerobiosis fhlA not effect Aerobiosis/ Anaerobiosis growth on anaerobiosis growth on microaerobiosis yfiD repressed yfiDp Aerobiosis/ Anaerobiosis growth on microaerobiosis growth on aerobiosis hydN induced Aerobiosis/ Anaerobiosis growth on microaerobiosis growth on aerobiosis yfiD induced yfiDp Aerobiosis/ Anaerobiosis growth on nitrate growth without nitrate dmsA repressed Aerobiosis/ Anaerobiosis growth on nitrate growth without nitrate dmsB repressed Aerobiosis/ Anaerobiosis growth on nitrate growth without nitrate dmsC repressed Amino acids Growth on Tyrosine 1 mM growth without Tyrosine aroP repressed aroPp1 TyrR-Tyrosine Amino acids Growth on Tyrosine 1 mM growth without Tyrosine aroP repressed aroPp2 TyrR-Tyrosine Amino acids Growth on Tyrosine 1 mM growth without Tyrosine mtr induced mtrp2 TyrR-Tyrosine Amino acids Growth with amino acid on the medium Culture medium without amino acids aidB induced Amino acids Growth with amino acid on the medium Culture medium without amino acids gcvT induced Amino acids Growth with amino acid on the medium Culture medium without amino acids ilvL repressed Amino acids Growth with amino acid on the medium Culture medium without amino acids osmY induced Amino acids Growth with amino acid on the medium Culture medium without amino acids sdaC induced CRP-cAMP Amino acids Growth with amino acid on the medium Culture medium without amino acids sdaC induced Lrp-Leucine Amino acids Growth with amino acid on the medium Culture medium without amino acids stpA repressed Lrp-Leucine Amino acids Growth with proline Growth without proline putA induced Amino acids Growth with proline Growth without proline putP induced Amino acids growth on phenylalanine 1 mM growth without phenylalanine aroP repressed aroPp1 TyrR-Phenylalanine Amino acids growth on phenylalanine 1 mM growth without phenylalanine aroP repressed aroPp2 TyrR-Phenylalanine Amino acids growth on tryptophan 1 mM growth without tryptophan aroP repressed aroPp1 TyrR-Tryptophan Amino acids growth on tryptophan 1 mM growth without tryptophan aroP repressed aroPp2 TyrR-Tryptophan Amino acids with phenylalanine without phenylalanine aroL repressed aroLp TyrR-Phenylalanine Amino acids with phenylalanine without phenylalanine aroM repressed aroLp TyrR-Phenylalanine Amino acids with phenylalanine without phenylalanine mtr induced mtrp2 TyrR-Phenylalanine Amino acids with phenylalanine without phenylalanine tyrP induced tyrPp1 TyrR-Phenylalanine Amino acids with phenylalanine without phenylalanine yaiA repressed aroLp TyrR-Phenylalanine Amino acids with tryptophan without tryptophan aroL repressed aroLp TyrR-Tryptophan Amino acids with tryptophan without tryptophan aroM repressed aroLp TyrR-Tryptophan Amino acids with tryptophan without tryptophan mtr repressed mtrp2 TyrR-Tryptophan Amino acids with tryptophan without tryptophan yaiA repressed aroLp TyrR-Tryptophan Amino acids with tyrosine without tyrosine aroF repressed aroFp TyrR-Tyrosine Amino acids with tyrosine without tyrosine aroL repressed aroLp TyrR-Tyrosine Amino acids with tyrosine without tyrosine aroM repressed aroLp TyrR-Tyrosine Amino acids with tyrosine without tyrosine mtr induced mtrp2 TyrR-Tyrosine Amino acids with tyrosine without tyrosine tyrA repressed aroFp TyrR-Tyrosine Amino acids with tyrosine without tyrosine tyrP repressed tyrPp1 TyrR-Tyrosine Amino acids with tyrosine without tyrosine yaiA repressed aroLp TyrR-Tyrosine Amino acids without amino acids with amino acids guaA repressed guaBp Amino acids without amino acids with amino acids guaB repressed guaBp Amino acids without amino acids with amino acids hupB repressed hupBp2 Amino acids without amino acids with amino acids ilvL induced ilvIHp1 Amino acids without amino acids with amino acids leuB induced Antibiotic stress Growth with arsenite Growth without arsenite arsR induced Antibiotic stress with ampicillin without ampicillin marA not effect Antibiotic stress with antibiotic stress without antibiotic stress mprA induced Antibiotic stress with antibiotic stress without antibiotic stress mprA induced Antibiotic stress with antibiotic stress without antibiotic stress mprA induced Antibiotic stress with antibiotic stress without antibiotic stress mprA induced Antibiotic stress with antibiotic stress without antibiotic stress mprA induced Antibiotic stress with antibiotic stress without antibiotic stress mprA not effect Antibiotic stress with antibiotic stress without antibiotic stress mprA not effect Antibiotic stress with antibiotic stress without antibiotic stress tyrT repressed Antibiotic stress with chloramphenicol without chloramphenicol hscA induced Antibiotic stress with chloramphenicol without chloramphenicol marA induced marRp Antibiotic stress with chloramphenicol without chloramphenicol marB induced marRp Antibiotic stress with chloramphenicol without chloramphenicol marR induced marRp Antibiotic stress with nalidixic acid without nalidixic acid marA not effect marRp Antibiotic stress with nalidixic acid without nalidixic acid marB not effect marRp Antibiotic stress with nalidixic acid without nalidixic acid marR not effect marRp Antibiotic stress with norfloxacin without norfloxacin marA not effect marRp Antibiotic stress with norfloxacin without norfloxacin marB not effect marRp Antibiotic stress with norfloxacin without norfloxacin marR not effect marRp Antibiotic stress with salicylate without salicylate emrA induced mprAp Antibiotic stress with salicylate without salicylate emrB induced mprAp Antibiotic stress with salicylate without salicylate inaA induced Antibiotic stress with salicylate without salicylate marA induced marRp Antibiotic stress with salicylate without salicylate marB induced marRp Antibiotic stress with salicylate without salicylate marR induced marRp Antibiotic stress with salicylate without salicylate mprA induced mprAp Antibiotic stress with tetracycline without tetracycline marA induced marRp Antibiotic stress with tetracycline without tetracycline marB induced marRp Antibiotic stress with tetracycline without tetracycline marR induced marRp Antibiotic stress with tetracycline without tetracycline metK induced Antibiotic stress with tetracycline without tetracycline rutR induced Carbon Source Glucose starvation Growth on glucose appA induced AppY Carbon Source Glucose starvation Growth on glucose appB induced AppY Carbon Source Glucose starvation Growth on glucose appC induced AppY Carbon Source Glucose starvation Growth on glucose appY induced Carbon Source Glucose starvation Growth on glucose bolA induced bolAp1 Carbon Source Glucose starvation Growth on glucose csiD induced csiDp CRP-cAMP Carbon Source Glucose starvation Growth on glucose csiE induced Carbon Source Glucose starvation Growth on glucose dcuB induced Carbon Source Glucose starvation Growth on glucose dgsA induced Carbon Source Glucose starvation Growth on glucose dgsA repressed Carbon Source Glucose starvation Growth on glucose dps induced Carbon Source Glucose starvation Growth on glucose hyaA induced AppY Carbon Source Glucose starvation Growth on glucose lamB induced Carbon Source Glucose starvation Growth on glucose malE induced malEp Carbon Source Glucose starvation Growth on glucose malF induced malEp Carbon Source Glucose starvation Growth on glucose malG induced malEp Carbon Source Glucose starvation Growth on glucose malT induced malTp Carbon Source Glucose starvation Growth on glucose ptsG repressed ptsGp1 Carbon Source Glucose starvation Growth on glucose rob induced Carbon Source Glucose starvation Growth on glucose rpoS induced Carbon Source Glucose starvation Growth on glucose trxA repressed Carbon Source Growth in medium supplemented with focuse Growth not supplemented with fucose galR not effect Carbon Source Growth in medium supplemented with focuse Growth not supplemented with fucose galS induced CRP-cAMP Carbon Source Growth on glucitol Growth without glucitol gutM induced Carbon Source Growth on glucitol Growth without glucitol gutQ induced Carbon Source Growth on glucitol Growth without glucitol srlA induced srlAp Carbon Source Growth on glucitol Growth without glucitol srlB induced Carbon Source Growth on glucitol Growth without glucitol srlD induced Carbon Source Growth on glucitol Growth without glucitol srlE induced Carbon Source Growth on glucitol Growth without glucitol srlR induced Carbon Source Growth on glycerol Growth on glucose csiD induced Lrp-Leucine Carbon Source Growth on glycerol Growth on glucose dnaN induced dnaNp1 Carbon Source Growth on glycerol Growth on glucose recF induced dnaNp1 Carbon Source Growth on glycerol Growth on glucose rpoS induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source aceA induced aceBp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source aceB induced aceBp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source aceK induced aceBp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source acrA induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source aroA repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source dcuB repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source dinD induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source emrA induced mprAp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source emrB induced mprAp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source gnd induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source marA induced marRp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source marB induced marRp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source marR induced marRp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source mprA induced mprAp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source nagB induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source nagB induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source nirB repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source nrdE induced nrdHp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source nrdF induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source nrfA induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source osmY induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source pdhR induced pdhRp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source rhaA induced rhaBp CRP-cAMP Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source rhaB induced rhaBp CRP-cAMP Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source rhaD induced rhaBp CRP-cAMP Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source rhaR induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source rhaS induced rhaSp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source sdiA repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source serC repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source soxS induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source tynA repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source tynA repressed Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source upp induced Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source yiaK induced yiaKp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source yiaK induced yiaKp Carbon Source Growth on non-optimal carbon source Growth on optimal carbon source yiaK induced yiaKp Carbon Source growth on aspartate growth on glucose dcuB induced Carbon Source growth on aspartate growth on glucose frdA induced Carbon Source growth on glucose growth on glycerol crp repressed CRP-cAMP Carbon Source growth on glucose growth on glycerol crp repressed CRP-cAMP Carbon Source growth on glucose growth on glycerol ptsG induced ptsGp1 Carbon Source growth on glucose growth on glycerol ptsG induced ptsGp1 Carbon Source growth on malate growth on glucose dcuB induced Carbon Source growth on malate growth on glucose dcuB induced Carbon Source growth on malate growth on glucose frdA induced Carbon Source growth on malate growth on glucose frdA induced Carbon Source growth on maltose growth without maltose lamB induced malKp Carbon Source growth on maltose growth without maltose malE induced malEp Carbon Source growth on maltose growth without maltose malF induced malEp Carbon Source growth on maltose growth without maltose malG induced malEp Carbon Source growth on maltose growth without maltose malK induced malKp Carbon Source growth on maltose growth without maltose malM induced malKp Carbon Source growth on no-optimal carbon source growth on LB cpxP not effect Carbon Source growth on no-optimal carbon source growth on LB fic induced Carbon Source growth on no-optimal carbon source growth on LB mdtA induced Carbon Source growth on no-optimal carbon source growth on LB osmY induced Carbon Source growth on others carbon sources growth on glycerol dctA induced Carbon Source growth on others carbon sources growth on glycerol garD induced Carbon Source growth on others carbon sources growth on glycerol garP induced Carbon Source growth on others carbon sources growth on glycerol gudP induced Carbon Source growth on others carbon sources growth on glycerol mhpA induced mhpAp Carbon Source growth on succinate growth on glucose dcuB induced Carbon Source growth on succinate growth on glucose feaR induced Carbon Source growth on succinate growth on glucose frdA induced Carbon Source growth on succinate growth on glucose tynA induced Carbon Source growth on tartrate growth on glucose dcuB induced Carbon Source growth on tartrate growth on glucose frdA induced Carbon Source growth with fumarate growth without fumarate dcuB induced Carbon Source growth with fumarate growth without fumarate dcuC induced Carbon Source growth with fumarate growth without fumarate frdA induced Carbon Source growth with fumarate growth without fumarate nuoA induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoB induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoC induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoE induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoF induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoG induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoH induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoI induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoJ induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoK induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoL induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoM induced nuoAp1 Carbon Source growth with fumarate growth without fumarate nuoN induced nuoAp1 Carbon Source growth with glucose growth without glucose aceA repressed aceBp Carbon Source growth with glucose growth without glucose aceB repressed aceBp Carbon Source growth with glucose growth without glucose aceK repressed aceBp Carbon Source growth with glucose growth without glucose aroA induced Carbon Source growth with glucose growth without glucose dgsA induced Carbon Source growth with glucose growth without glucose dgsA repressed Carbon Source growth with glucose growth without glucose epd repressed Carbon Source growth with glucose growth without glucose feaR repressed Carbon Source growth with glucose growth without glucose glpA repressed glpABCp Carbon Source growth with glucose growth without glucose glpD repressed glpDp Carbon Source growth with glucose growth without glucose glpF repressed glpFp Carbon Source growth with glucose growth without glucose glpT repressed glpTQp Carbon Source growth with glucose growth without glucose ptsA induced ptsHp5 Carbon Source growth with glucose growth without glucose serC induced serCp Carbon Source growth with glucose growth without glucose tsx repressed CytR Carbon Source growth with glucose growth without glucose tynA repressed Carbon Source growth with glucose growth without glucose yiaJ repressed Carbon Source growth with glucose growth without glucose yiaK repressed yiaKp CRP-cAMP Carbon Source growth with glycine growth without glycine gcvT induced gcvTp Carbon Source growth with glycolate growth without glycolate glcA induced Carbon Source growth with glycolate growth without glycolate glcB induced Carbon Source growth with glycolate growth without glycolate glcD induced glcDp Carbon Source growth with glycolate growth without glycolate glcE induced GlcC-Glycolate Carbon Source growth with glycolate growth without glycolate glcE induced GlcC-Glycolate Carbon Source growth with glycolate growth without glycolate glcG induced Carbon Source growth with homocysteine growth without homocysteine hmp repressed Carbon Source growth with inosine growth without inosine gcvT repressed gcvTp Carbon Source supplemented with glucose no supplemented cpxP not effect Carbon Source supplemented with glucose no supplemented dadA repressed CRP-cAMP Carbon Source supplemented with glucose no supplemented dadA repressed Carbon Source supplemented with glucose no supplemented fumA repressed Carbon Source supplemented with glucose no supplemented fumC repressed Carbon Source supplemented with glucose no supplemented hupA repressed hupAp Carbon Source supplemented with glucose no supplemented hupB repressed hupBp3 Carbon Source supplemented with glucose no supplemented sdaC repressed Compounds overproduction overproduction of NlpE no-overproduction of NlpE cpxP induced Compounds overproduction overproduction of NlpE no-overproduction of NlpE degP induced CpxR-Phosphorylated Compounds overproduction overproduction of NlpE no-overproduction of NlpE dsbA induced rdoAp CpxR-Phosphorylated Compounds overproduction overproduction of NlpE no-overproduction of NlpE rdoA induced rdoAp CpxR-Phosphorylated Compounds overproduction overproduction of NlpE no-overproduction of NlpE rpoH not effect rpoHp3 Compounds overproduction overproduction of OmpC no-overproduction of OmpC degP induced Compounds overproduction overproduction of OmpC no-overproduction of OmpC rpoH induced rpoHp3 Compounds overproduction overproduction of OmpF no-overproduction of OmpF degP induced Compounds overproduction overproduction of OmpF no-overproduction of OmpF dsbA not effect dsbAp Compounds overproduction overproduction of OmpF no-overproduction of OmpF ppiA induced ppiAp1 Compounds overproduction overproduction of OmpF no-overproduction of OmpF rpoH not effect rpoHp3 Compounds overproduction overproduction of OmpX no-overproduction of OmpX degP induced Compounds overproduction overproduction of OmpX no-overproduction of OmpX fkpA induced Compounds overproduction overproduction of OmpX no-overproduction of OmpX rpoH induced rpoHp3 Compounds overproduction overproduction of sigma E no-overproduction of sigma E dsbA not effect Compounds overproduction overproduction of sigma E no-overproduction of sigma E rdoA not effect Compounds overproduction protein overproduction no protein overproduction degP not effect Compounds overproduction protein overproduction no protein overproduction gapA induced Compounds overproduction protein overproduction no protein overproduction gapA induced Compounds overproduction protein overproduction no protein overproduction gapA induced Compounds overproduction protein overproduction no protein overproduction rplJ repressed Compounds overproduction protein overproduction no protein overproduction rplK repressed Compounds overproduction protein overproduction no protein overproduction rpoB repressed Growth phase Culture in late exponential growth phase Culture in early exponential growth phase ampC repressed Growth phase Culture in late exponential growth phase Culture in early exponential growth phase bolA induced bolAp1 Growth phase Culture in late exponential growth phase Culture in early exponential growth phase dacA repressed Growth phase Culture in late exponential growth phase Culture in early exponential growth phase dacC repressed Growth phase Stationary phase Exponential phase acnA induced acnAp1 Growth phase Stationary phase Exponential phase acrA induced Growth phase Stationary phase Exponential phase acrR induced Growth phase Stationary phase Exponential phase adhE induced adhEp1 Growth phase Stationary phase Exponential phase adhE induced adhEp2 Growth phase Stationary phase Exponential phase appB induced Growth phase Stationary phase Exponential phase appC induced Growth phase Stationary phase Exponential phase appY induced Growth phase Stationary phase Exponential phase blc induced Growth phase Stationary phase Exponential phase bolA induced bolAp1 Growth phase Stationary phase Exponential phase bolA induced OmpR Growth phase Stationary phase Exponential phase csiE induced speAp Growth phase Stationary phase Exponential phase cspD induced Growth phase Stationary phase Exponential phase csrA induced Growth phase Stationary phase Exponential phase dnaN induced dnaNp1 Growth phase Stationary phase Exponential phase dppA induced Growth phase Stationary phase Exponential phase ecnB induced Growth phase Stationary phase Exponential phase ecnB induced Growth phase Stationary phase Exponential phase fic induced Growth phase Stationary phase Exponential phase gabP induced Growth phase Stationary phase Exponential phase gabP induced Growth phase Stationary phase Exponential phase gadA induced Growth phase Stationary phase Exponential phase gadB induced gadBp Growth phase Stationary phase Exponential phase gadC induced Growth phase Stationary phase Exponential phase gor induced Growth phase Stationary phase Exponential phase hmp induced Growth phase Stationary phase Exponential phase hns induced H-NS Growth phase Stationary phase Exponential phase hyaA induced Growth phase Stationary phase Exponential phase ihfA repressed ihfAp4 Growth phase Stationary phase Exponential phase ihfB repressed Growth phase Stationary phase Exponential phase katE induced Growth phase Stationary phase Exponential phase katE induced Growth phase Stationary phase Exponential phase katE induced Growth phase Stationary phase Exponential phase lptD induced Growth phase Stationary phase Exponential phase lrp induced Growth phase Stationary phase Exponential phase lrp induced Growth phase Stationary phase Exponential phase mdtE induced Growth phase Stationary phase Exponential phase mdtE induced Growth phase Stationary phase Exponential phase mpl induced Growth phase Stationary phase Exponential phase msrA induced Growth phase Stationary phase Exponential phase osmB induced Growth phase Stationary phase Exponential phase osmB induced Growth phase Stationary phase Exponential phase osmB induced Growth phase Stationary phase Exponential phase osmC induced Growth phase Stationary phase Exponential phase osmE induced Growth phase Stationary phase Exponential phase osmY induced Growth phase Stationary phase Exponential phase osmY induced Growth phase Stationary phase Exponential phase otsA induced Growth phase Stationary phase Exponential phase otsA induced Growth phase Stationary phase Exponential phase otsB induced Growth phase Stationary phase Exponential phase otsB induced Growth phase Stationary phase Exponential phase polA induced Growth phase Stationary phase Exponential phase proP induced Growth phase Stationary phase Exponential phase proP induced Growth phase Stationary phase Exponential phase proX induced Growth phase Stationary phase Exponential phase recF induced dnaNp1 Growth phase Stationary phase Exponential phase recF induced Growth phase Stationary phase Exponential phase rob induced Growth phase Stationary phase Exponential phase rob induced Growth phase Stationary phase Exponential phase rrfA repressed rrsBp1 Growth phase Stationary phase Exponential phase sdaA repressed Growth phase Stationary phase Exponential phase sohB repressed Growth phase Stationary phase Exponential phase treA induced Growth phase Stationary phase Exponential phase treA induced Growth phase Stationary phase Exponential phase yeiL induced yeiLp Growth phase Stationary phase Exponential phase yeiL induced yeiLp Growth phase Stationary phase Exponential phase yfiD induced yfiDp Growth phase Stationary phase Exponential phase yihI repressed Growth phase condition of high cell density without condition ftsQ induced ftsQp1 Growth phase condition of high cell density without condition ftsQ induced SdiA Growth phase condition of high cell density without condition ftsQ repressed Growth phase condition of high cell density without condition ftsZ induced Growth phase condition of high cell density without condition sdiA repressed Growth phase condition of high cell density without condition sdiA repressed Growth phase exponential growth beginning of growth acnA induced acnAp1 Growth phase exponential growth beginning of growth cydD induced cydDp Growth phase exponential growth beginning of growth hns repressed Growth phase exponential growth beginning of growth hupA induced hupAp Growth phase exponential growth beginning of growth hupB induced hupBp2 Growth phase exponential growth beginning of growth hupB induced hupBp3 Growth phase exponential growth beginning of growth ihfA induced Growth phase exponential growth beginning of growth ihfB induced Growth phase exponential growth beginning of growth lrp induced Growth phase exponential growth beginning of growth oxyR induced CRP-cAMP Growth phase exponential growth beginning of growth yhcA induced Growth phase exponential growth beginning of growth yhcB induced Media composition growth on rich medium growth on minimal medium adiA induced adiAp Media composition growth on rich medium growth on minimal medium aroA repressed Media composition growth on rich medium growth on minimal medium serC repressed Motility motility no motility flhC induced OmpR-Phosphorylated Motility motility no motility flhD induced OmpR-Phosphorylated Nitrogen source Growth on ammonia starvation Growth without ammonia starvation csiE induced Nitrogen source Growth on ammonia starvation Growth without ammonia starvation cynT induced CynR-Cyanate Nitrogen source Growth on ammonia starvation Growth without ammonia starvation glnK induced Nitrogen source Growth with alternative nitrogen source Growth with ammonia gcl induced Nitrogen source Growth with alternative nitrogen source Growth with ammonia gcl induced Nitrogen source growth on nitrate growth in ammonia aegA induced Nitrogen source growth on nitrate growth in ammonia cydD induced cydDp Nitrogen source growth on nitrate growth in ammonia frdA repressed Nitrogen source growth on nitrate growth in ammonia hydN induced Nitrogen source growth on nitrate growth in ammonia narG induced Nitrogen source growth on nitrate growth in ammonia narK induced Nitrogen source growth on nitrate growth in ammonia narX induced Nitrogen source growth on nitrate growth in ammonia nirB induced Nitrogen source growth on nitrate growth in ammonia nrfA repressed Nitrogen source growth on nitrate growth in ammonia yhaB repressed Nucleotides Growth on inosine Growth without inosine gcvT repressed GcvA Nucleotides Growth on inosine Growth without inosine hmp induced Nucleotides thymine starvation growth on thymine nrdA induced nrdAp Nucleotides thymine starvation growth on thymine nrdB induced nrdAp Oligoelements Growth on L-djenkolate Growth on L-cysteine cbl induced cblp CysB-O-acetyl-L-serine Oligoelements Growth with ferric supplement Growth without ferric supplement fecA induced Oligoelements Growth with ferric supplement Growth without ferric supplement fecB induced Oligoelements Growth with ferric supplement Growth without ferric supplement fecB not effect Oligoelements Without Iron With Iron fepA induced Oligoelements Without Iron With Iron fes induced Oligoelements growth with metal growth without metal arsB induced Oligoelements growth with metal growth without metal metA induced Oligoelements growth with metal growth without metal soxS induced Oligoelements growth with metal growth without metal zntA induced Oligoelements growth with metal growth without metal znuA induced Oligoelements growth with metal growth without metal znuA repressed Oligoelements growth with metal growth without metal zraP induced Oligoelements growth with metal growth without metal zraP induced Oligoelements growth with metal growth without metal zraR induced Oligoelements growth with metal growth without metal zraR induced Oligoelements iron depletion iron repletion acnA induced Oligoelements iron depletion iron repletion fumC induced Oligoelements iron depletion iron repletion fur induced Oligoelements iron depletion iron repletion znuA repressed Oligoelements iron depletion iron repletion znuB induced Oligoelements iron depletion iron repletion znuC repressed Oligoelements phosphate starvation growth with phosphate appA induced appCp Oligoelements phosphate starvation growth with phosphate appB induced appCp Oligoelements phosphate starvation growth with phosphate appC induced appCp Oligoelements phosphate starvation growth with phosphate argP induced PhoB-Phosphorylated Oligoelements phosphate starvation growth with phosphate csiE induced Oligoelements phosphate starvation growth with phosphate hyaA induced AppY Oligoelements phosphate starvation growth with phosphate phoA induced Oligoelements phosphate starvation growth with phosphate ptsA induced PhoB-Phosphorylated Oligoelements phosphate starvation growth with phosphate rob induced Oligoelements with vitamin without vitamin bioA repressed bioAp Osmotic stress Addition of NaCl No addition of NaCl appB induced Osmotic stress Addition of NaCl No addition of NaCl appC induced Osmotic stress Addition of NaCl No addition of NaCl betI induced Osmotic stress Addition of NaCl No addition of NaCl betT induced Osmotic stress Addition of NaCl No addition of NaCl bolA induced bolAp1 Osmotic stress Addition of NaCl No addition of NaCl cpxP induced Osmotic stress Addition of NaCl No addition of NaCl csgA repressed Osmotic stress Addition of NaCl No addition of NaCl csgB repressed csgBp Osmotic stress Addition of NaCl No addition of NaCl csgD repressed csgDp1 Osmotic stress Addition of NaCl No addition of NaCl csgE repressed Osmotic stress Addition of NaCl No addition of NaCl csgF repressed Osmotic stress Addition of NaCl No addition of NaCl csgG repressed Osmotic stress Addition of NaCl No addition of NaCl csiD not effect Osmotic stress Addition of NaCl No addition of NaCl dps induced Osmotic stress Addition of NaCl No addition of NaCl hyaA induced Osmotic stress Addition of NaCl No addition of NaCl mdoG repressed Osmotic stress Addition of NaCl No addition of NaCl mdoH repressed Osmotic stress Addition of NaCl No addition of NaCl osmB induced Osmotic stress Addition of NaCl No addition of NaCl osmC induced Osmotic stress Addition of NaCl No addition of NaCl osmE induced Osmotic stress Addition of NaCl No addition of NaCl osmY induced Osmotic stress Addition of NaCl No addition of NaCl osmY induced Osmotic stress Addition of NaCl No addition of NaCl otsA induced Osmotic stress Addition of NaCl No addition of NaCl proP induced proPp1 Fis Osmotic stress Addition of NaCl No addition of NaCl proX induced Osmotic stress Addition of NaCl No addition of NaCl rpoS induced Osmotic stress Addition of NaCl No addition of NaCl stpA induced Osmotic stress Addition of NaCl No addition of NaCl stpA induced Osmotic stress Addition of NaCl No addition of NaCl treA induced Osmotic stress Addition of NaCl No addition of NaCl treB induced treBp Osmotic stress Addition of NaCl No addition of NaCl treC induced H-NS Osmotic stress Addition of NaCl No addition of NaCl tyrR repressed rrsBp1 Osmotic stress hyperosmotic condition Isoosmotic condition acrA induced Osmotic stress hyperosmotic condition Isoosmotic condition acrR induced Osmotic stress hyperosmotic condition Isoosmotic condition acrR induced Osmotic stress hyperosmotic condition Isoosmotic condition cspA not effect Osmotic stress hyperosmotic condition Isoosmotic condition degP induced Osmotic stress hyperosmotic condition Isoosmotic condition dnaK induced Osmotic stress hyperosmotic condition Isoosmotic condition dnaN induced dnaNp1 Osmotic stress hyperosmotic condition Isoosmotic condition fadL repressed Osmotic stress hyperosmotic condition Isoosmotic condition hupA repressed hupAp Osmotic stress hyperosmotic condition Isoosmotic condition hupB repressed hupBp2 Osmotic stress hyperosmotic condition Isoosmotic condition hupB repressed hupBp3 Osmotic stress hyperosmotic condition Isoosmotic condition ibpA induced Osmotic stress hyperosmotic condition Isoosmotic condition lptD induced Osmotic stress hyperosmotic condition Isoosmotic condition ompC induced Osmotic stress hyperosmotic condition Isoosmotic condition ompF induced Osmotic stress hyperosmotic condition Isoosmotic condition osmB induced Osmotic stress hyperosmotic condition Isoosmotic condition osmE induced Osmotic stress hyperosmotic condition Isoosmotic condition osmY induced Osmotic stress hyperosmotic condition Isoosmotic condition proP induced Osmotic stress hyperosmotic condition Isoosmotic condition proV induced proVp1 Osmotic stress hyperosmotic condition Isoosmotic condition recF induced dnaNp1 Osmotic stress hyperosmotic condition Isoosmotic condition rpoH induced rpoHp3 Osmotic stress hyperosmotic condition Isoosmotic condition treA induced Osmotic stress hypoosmotic environmet Isoosmotic condition aqpZ induced Osmotic stress hypoosmotic environmet Isoosmotic condition mdoH induced Osmotic stress hypoosmotic environmet Isoosmotic condition ompF induced Osmotic stress with hydrostatic pressure without hydrostatic pressure lamB repressed malKp Osmotic stress with hydrostatic pressure without hydrostatic pressure malE repressed malEp Osmotic stress with hydrostatic pressure without hydrostatic pressure malF repressed malEp Osmotic stress with hydrostatic pressure without hydrostatic pressure malG repressed malEp Osmotic stress with hydrostatic pressure without hydrostatic pressure malK repressed malKp Osmotic stress with hydrostatic pressure without hydrostatic pressure malM repressed malKp Oxidative Stress Growth on S-nitrosoglutathione Growth without S-nitrosoglutathione hmp induced MetR-Homocysteine Oxidative Stress Growth on sodium nitroprusside Growth without sodium nitroprusside hmp induced MetR-Homocysteine Oxidative Stress alkylating conditions no-alkylating conditions ada induced Oxidative Stress alkylating conditions no-alkylating conditions aidB induced aidBp Oxidative Stress growrth with oxidative stress growth without oxidative stress acnA induced acnAp2 Oxidative Stress growrth with oxidative stress growth without oxidative stress dps induced Oxidative Stress growrth with oxidative stress growth without oxidative stress grxA induced Oxidative Stress with hydrogen peroxide without hydrogen peroxide ahpC induced ahpC OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide ahpC induced ahpC OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide bolA induced bolAp1 Oxidative Stress with hydrogen peroxide without hydrogen peroxide dps induced OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide fhuF repressed OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide fldA repressed fldAp Oxidative Stress with hydrogen peroxide without hydrogen peroxide fpr induced SoxR Oxidative Stress with hydrogen peroxide without hydrogen peroxide fur induced furp1 OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide fur repressed fldAp Oxidative Stress with hydrogen peroxide without hydrogen peroxide gor induced OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide inaA induced SoxR Oxidative Stress with hydrogen peroxide without hydrogen peroxide katG induced OxyR Oxidative Stress with hydrogen peroxide without hydrogen peroxide sodA induced SoxR Oxidative Stress with hydrogen peroxide without hydrogen peroxide soxS induced SoxR Oxidative Stress with nitric oxid without nitric oxide (NO) soxS induced soxSp SoxR Oxidative Stress with paraquat without paraquat acnA induced SoxS Oxidative Stress with paraquat without paraquat fldA induced fldAp SoxS Oxidative Stress with paraquat without paraquat fumA not effect Oxidative Stress with paraquat without paraquat fumC induced SoxR Oxidative Stress with paraquat without paraquat fur induced fldAp SoxS Oxidative Stress with paraquat without paraquat hmp induced Oxidative Stress with paraquat without paraquat marR induced Oxidative Stress with paraquat without paraquat nfo induced SoxS Oxidative Stress with paraquat without paraquat sodA induced SoxS Oxidative Stress with paraquat without paraquat soxR repressed soxRp SoxR Oxidative Stress with paraquat without paraquat soxS induced soxSp SoxR Oxidative Stress with paraquat without paraquat zwf induced SoxS Stringent response stringent condition no stringent condition chpA repressed Stringent response stringent condition no stringent condition chpR repressed chpRp2 Stringent response stringent condition no stringent condition hmp induced Stringent response stringent condition no stringent condition lrp induced Stringent response stringent condition no stringent condition rpoS induced Stringent response stringent condition no stringent condition rsd induced Temperature stress growth on cold shock growth at 37oC crl not effect Temperature stress growth on cold shock growth at 37oC csgA induced Temperature stress growth on cold shock growth at 37oC cspA induced CspA Temperature stress growth on cold shock growth at 37oC hns induced hnsp Temperature stress growth on cold shock growth at 37oC hscA induced Temperature stress growth on cold shock growth at 37oC hscB induced Temperature stress growth on cold shock growth at 37oC hscB induced Temperature stress growth on cold shock growth at 37oC tolQ induced Temperature stress growth on cold shock growth at 37oC ybgC induced Temperature stress with heat shock without heat shock bolA induced bolAp1 Temperature stress with heat shock without heat shock degP induced Temperature stress with heat shock without heat shock dgsA induced Temperature stress with heat shock without heat shock dgsA induced Temperature stress with heat shock without heat shock dgsA induced Temperature stress with heat shock without heat shock dnaK induced Temperature stress with heat shock without heat shock hfq induced Temperature stress with heat shock without heat shock hfq repressed Temperature stress with heat shock without heat shock hfq repressed Temperature stress with heat shock without heat shock hslU induced hslVp Temperature stress with heat shock without heat shock hslV induced hslVp Temperature stress with heat shock without heat shock htgA induced Temperature stress with heat shock without heat shock htpX induced Temperature stress with heat shock without heat shock ibpA induced ibpAp Temperature stress with heat shock without heat shock ibpB induced ibpAp Temperature stress with heat shock without heat shock lpxL repressed Temperature stress with heat shock without heat shock metA induced Temperature stress with heat shock without heat shock miaA induced Temperature stress with heat shock without heat shock miaA induced Temperature stress with heat shock without heat shock mutL induced Temperature stress with heat shock without heat shock ppiD induced CpxR-Phosphorylated Temperature stress with heat shock without heat shock ptsG induced ptsGp1 Temperature stress with heat shock without heat shock ptsG induced ptsGp1 Temperature stress with heat shock without heat shock purA repressed Temperature stress with heat shock without heat shock rpoD induced Temperature stress with heat shock without heat shock rpoE induced rpoEp2 Temperature stress with heat shock without heat shock rpoE induced Temperature stress with heat shock without heat shock rpoE repressed rpoEp1 Temperature stress with heat shock without heat shock rseA induced rpoEp2 Temperature stress with heat shock without heat shock rseA repressed rpoEp1 Temperature stress with heat shock without heat shock rseB induced rpoEp2 Temperature stress with heat shock without heat shock rseB repressed rpoEp1 Temperature stress with heat shock without heat shock rseC induced rpoEp2 Temperature stress with heat shock without heat shock rseC repressed rpoEp1 Temperature stress with heat shock without heat shock stpA induced H-NS Temperature stress with heat shock without heat shock topA induced Temperature stress with heat shock without heat shock yceA repressed Temperature stress with heat shock without heat shock yjaZ induced pH extracellular pH 6.0 extracellular pH 5.0 lamB induced malKp pH extracellular pH 6.0 extracellular pH 5.0 malE induced malEp pH extracellular pH 6.0 extracellular pH 5.0 malF induced malEp pH extracellular pH 6.0 extracellular pH 5.0 malG induced malEp pH extracellular pH 6.0 extracellular pH 5.0 malK induced malKp pH extracellular pH 6.0 extracellular pH 5.0 malM induced malKp pH extracellular pH 6.0 extracellular pH 5.0 malP induced malPp pH extracellular pH 6.0 extracellular pH 5.0 malQ induced malPp pH extracellular pH 6.0 extracellular pH 5.0 malS induced malSp pH extracellular pH 6.0 extracellular pH 5.0 malT induced CRP-cAMP pH extracellular pH shift down isoosmotic extracellular pH adiA induced adiAp pH extracellular pH shift down isoosmotic extracellular pH aidB induced pH extracellular pH shift down isoosmotic extracellular pH bolA induced bolAp1 pH extracellular pH shift down isoosmotic extracellular pH cadA induced cadBp pH extracellular pH shift down isoosmotic extracellular pH cadB induced cadBp pH extracellular pH shift down isoosmotic extracellular pH gadA induced pH extracellular pH shift down isoosmotic extracellular pH gadB induced gadBp pH extracellular pH shift down isoosmotic extracellular pH gadC induced gadBp pH shift up extracellular pH extracellular pH cpxP induced pH shift up extracellular pH extracellular pH nmpC induced CRP-cAMP