# This file has a collection of transcription start sites (TSSs) that have been experimentally determined with high precision in Escherichia coli using # a modified 5' RACE protocol (Mendoza-Vargas et al , 2009. PLoS One). # From this collection, about 54 corresponded to previously reported TSSs, which helped us to benchmark both our methodologies and the accuracy of the previous mapping # experiments. # The TSSs mapped belong to about 269 different genes, many of them with no assigned function. # # Please when using this date quote: # # Alfredo Mendoza-Vargas(1), Leticia Olvera(1), Maricela Olvera(1), Ricardo Grande(4), Leticia Vega-Alvarado(2), Blanca Taboada(2), Ver—nica Jimenez-Jacinto(4), # Heladia Salgado(3), Katy Ju‡rez(1), Bruno Contreras-Moreira(3)Ū, Araceli M. Huerta(3), Julio Collado-Vides(3), Enrique Morett(1)*. 2009 # "Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli". # PLoS ONE 4((1)0): e7526. doi:(1)0.(1)37(1)/journal.pone.0007526 # #(1) Departamento de Ingenier’a Celular y Biocat‡lisis, Instituto de Biotecnolog’a, Universidad Nacional Aut—noma de Mˇxico, Cuernavaca, Morelos, Mˇxico, #(2) Centro de Ciencias Aplicadas y Desarrollo Tecnol—gico, Universidad Nacional Aut—noma de Mˇxico, Cuernavaca, Morelos, Mˇxico, #(3) Programa de Gen—mica Computacional, Centro de Ciencias Gen—micas, Universidad Nacional Aut—noma de Mˇxico, Cuernavaca, Morelos, Mˇxico, #(4) Unidad Universitaria de Secuenciaci—n Masiva, Universidad Nacional Aut—noma de Mˇxico, Cuernavaca, Morelos, Mˇxico # # Column Name Description # 1 Subset Directed Mapping of Transcriptional Start Sites (DMTSS) Data, divided in 3 sets: # Subset I: With previously known TSS and With promoter region predicted in this work # Subset II: Without previously known TSS and With promoter region predicted in this work # Subset III: Without previously known TSS and Without promoter region predicted in this work # 2 Gene_Name Gene name from regulonDB # 3 Relative_Position_toATG Relative position to ATG gen # 4 Absolute_Position Genome map position of Transcription Start Site (+1) # 5 Frecuency Frecuency: number of sequence in the same position # 6 TSS_Strand DNA strand sequence # 7 Seq_ID Sequence identifier assigned by Roche 454 GS Sequencer or assigned by authors # 8 Genomic Region Genomic region where is located the TSS with respect to the nearest gene # 9 Gene_Position left Gene left end position in the genome # 10 Gene_Position right Gene rigth end position in the genome # 11 Gene_Strand DNA strand where the gene is coded # 12 B_Name Blattner number (bnumber) of the gene # 13 Sequence Sequence of the promoter region (+1 upper case) # 14 Evidence type evidence # # # # Subset I dapD -30 185977 1 reverse b0166_185977 Upstream Sense Gene 185123 185947 reverse b0166 ttgcagcaggaagtgcatcagcggttgacagaggccctcaatccaaacgataaagggtgaTgtgtttactgatatgaaaag strong Subset I dcuB -19 4346786 1 reverse b4123_4346786 Upstream Sense Gene 4345427 4346767 reverse b4123 aaaacagttcatacaaaacagaacgtgactgtgatctattcagcaaaaatttaaataggaTtatcgcgagggttcacacat strong Subset I gadB -28 1570097 1 reverse b1493_1570097 Upstream Sense Gene 1568669 1570069 reverse b1493 ttatttaaacacgagtcctttgcacttgcttactttatcgataaatcctacttttttaatGcgatccaatcattttaagga strong Subset I lon -76 458036 1 forward b0439_458036 Upstream Sense Gene 458112 460466 forward b0439 ctttaatttttcctctattctcggcgttgaatgtgggggaaacatccccatatactgacgtAcatgttaatagatggcgtg strong Subset I menA -53 4118425 1 reverse b3930_4118425 Upstream Sense Gene 4117446 4118372 reverse b3930 tggatgcgttggtggcagatgaagatctgagccgttttatcctataatcgcgttcaatcaTtttcatcattgtttgatggg strong Subset I acnB -96 131519 1 forward b0118_131519 Upstream Sense Gene 131615 134212 forward b0118 tttatgttgcttttttgtaaacagattaacacctcgtcaaaatcctgctattctgcccgttGcggtactgggcatttaccc strong Subset I acs -19 4285413 1 reverse b4069_4285413 Upstream Sense Gene 4283436 4285394 reverse b4069 tactaaacaaaactgccaatacccctacatttaacgcttatgccacatattattaacatcCtacaaggagaacaaaagcat strong Subset I cfa -33 1739404 1 forward b1661_1739404 Upstream Sense Gene 1739437 1740585 forward b1661 gactcgcggttttttctgcgagatttctcacaaagcccaaaaagcgtctacgctgttttaaGgttctgatcaccgaccagt strong Subset I cfa -212 1739225 1 forward b1661_1739225 Upstream Sense Gene 1739437 1740585 forward b1661 tacttaggctgctaacaaaattttgttgtatgattgaaattagcggcctatactaatttcgAgttgttaaagctacgataa strong Subset I cmk -38 960386 1 forward b0910_960386 Upstream Sense Gene 960424 961107 forward b0910 caaaactggtttttgcacacaacgttaacgatttgtggcgtcggcgcgtataatgcgcgcgGttatgttaacggtacgcct strong Subset I cvpA -36 2428821 1 reverse b2313_2428821 Upstream Sense Gene 2428297 2428785 reverse b2313 ttgatgcgcgggaaggaaatccctacgcaaacgttttctttttctgttagaatgcgccccGaacaggatgacagggcgtaa strong Subset I cydA -174 770507 1 forward b0733_770507 Upstream Sense Gene 770681 772249 forward b0733 atgcaaatttgcttcaacaaaaacctgtttattgtaaggattttgcggcgtaatatatacgTgggatcaatttgagttttt strong Subset I cysK -32 2530399 1 forward b2414_2530399 Upstream Sense Gene 2530431 2531402 forward b2414 gtatatagatatgctaaatccttacttccgcatattctctgagcgggtatgctacctgttgTatcccaatttcatacagtt strong Subset I dctA -51 3681521 1 reverse b3528_3681521 Upstream Sense Gene 3680184 3681470 reverse b3528 ttgtttcaattatgatccaggtacatttctgtgatgttgtctgggtgttattttaaggccGcaggtaccccataaccttac strong Subset I dgsA -26 1666614 1 reverse b1594_1666614 Upstream Sense Gene 1665368 1666588 reverse b1594 ctaagtaaaaatttgacgacacgtattgaagtgcttcaccatagcctacagattatttcgGagcgcgaaaatatagggagt strong Subset I gdhA -63 1840332 1 forward b1761_1840332 Upstream Sense Gene 1840395 1841738 forward b1761 ctttcctgggtcatttttttcttgcttaccgtcacattcttgatggtatagtcgaaaactgCaaaagcacatgacataaac strong Subset I glpD -42 3559994 1 forward b3426_3559994 Upstream Sense Gene 3560036 3561541 forward b3426 tcactctaaaatgttttttcaatgttacctaaagcgcgattctttgctaatatgttcgataAcgaacatttatgagcttta strong Subset I glpT -77 2350473 1 reverse b2240_2350473 Upstream Sense Gene 2349038 2350396 reverse b2240 atttaataatgtgtgcggcaattcacatttaatttatgaatgttttcttaacatcgcggcAactcaagaaacggcaggttc strong Subset I hns -36 1292181 1 reverse b1237_1292181 Upstream Sense Gene 1291732 1292145 reverse b1237 tttgaattccttacattcctggctattgcacaactgaatttaaggctctattattacctcAacaaaccaccccaatataag strong Subset I hupA -105 4198199 1 forward b4000_4198199 Upstream Sense Gene 4198304 4198576 forward b4000 gcctgatttgtcgtacctggagtcttccctttcgccccccgtctggtctacatttggggggCgaaaaaaagtggctatcgg strong Subset I hybO -102 3144385 1 reverse b2997_3144385 Upstream Sense Gene 3143165 3144283 reverse b2997 attaattacactaatgcttcttcccttcgttttagcgccccgccgcagtatcatgatatcGataaccataataaatgtgtg strong Subset I mpl -25 4453783 1 forward b4233_4453783 Upstream Sense Gene 4453808 4455181 forward b4233 aaattacggattatcctgaaatgcgtttctcacttgcccgacatatgcgtaaaatgagcggCagattaaaaaaggatagtg strong Subset I nirB -24 3492009 1 forward b3365_3492009 Upstream Sense Gene 3492033 3494576 forward b3365 ataaaggtgaatttgatttacatcaataagcggggttgctgaatcgttaaggtaggcggtaAtagaaaagaaatcgaggca strong Subset I ompA -133 1019409 1 reverse b0957_1019409 Upstream Sense Gene 1018236 1019276 reverse b0957 ttcatatgcctgacggagttcacacttgtaagttttcaactacgttgtagactttacatcGccaggggtgctcggcataag strong Subset I oxyR -33 4156480 1 forward b3961_4156480 Upstream Sense Gene 4156513 4157430 forward b3961 tgagcaattatcagtcagaatgcttgatagggataatcgttcattgctattctacctatcgCcatgaactatcgtggcgat strong Subset I pfkA -78 4105497 1 forward b3916_4105497 Upstream Sense Gene 4105575 4106537 forward b3916 accgccatttggcctgacctgaatcaattcagcaggaagtgattgttatactatttgcacaTtcgttggatcacttcgatg strong Subset I pgi -36 4231745 1 forward b4025_4231745 Upstream Sense Gene 4231781 4233430 forward b4025 acattacgctaacggcactaaaaccatcacatttttctgtgactggcgctacaatcttccaAagtcacaattctcaaaatc strong Subset I poxB -27 910299 1 reverse b0871_910299 Upstream Sense Gene 908554 910272 reverse b0871 ttagtgcctcctttctctcccatcccttccccctccgtcagatgaactaaacttgttaccGttatcacattcaggagatgg strong Subset I purA -23 4402687 1 forward b4177_4402687 Upstream Sense Gene 4402710 4404008 forward b4177 ggtcatttttgagtgcaaaaagtgctgtaactctgaaaaagcgatggtagaatccatttttAagcaaacggtgattttgaa strong Subset I rpsM -94 3440587 1 reverse b3298_3440587 Upstream Sense Gene 3440137 3440493 reverse b3298 aaggctgattttttcgcatatttttcttgcaaagttgggttgagctggctagattagccaGccaatcttttgtatgtctgt strong Subset I rpsP -69 2744276 1 reverse b2609_2744276 Upstream Sense Gene 2743959 2744207 reverse b2609 tttacagcagagttagcaactgttgattgcaattcccgcaaaaatgagtaaaattttcggGcttttaatatgacaccggac strong Subset I rpsT -132 21210 1 reverse b0023_21210 Upstream Sense Gene 20815 21078 reverse b0023 tgctgcaatttttatcgcggaaaagctgtattcacaccccgcaagctggtagaatcctgcGccatcactacgtaacgagtg strong Subset I slyB -99 1717801 1 forward b1641_1717801 Upstream Sense Gene 1717900 1718367 forward b1641 ataatcatcatgaatgttttgtttataattggttgatcctactttcattatgatttgctcaTatttggtagaacatgtaac strong Subset I tig -140 454217 1 forward b0436_454217 Upstream Sense Gene 454357 455655 forward b0436 tacgcgacagcgcgcaataaccgttctcgactcataaaagtgatgccgctataatgccgcgTcctatttgaatgctttcgg strong Subset I tnaC -24 3886434 1 forward b3707_3886434 Upstream Sense Gene 3886458 3886532 forward b3707 cgattcacatttaaacaatttcagaatagacaaaaactctgagtgtaataatgtagcctcgTgtcttgcgaggataagtgc strong Subset I uspA -128 3638006 1 forward b3495_3638006 Upstream Sense Gene 3638134 3638568 forward b3495 tttatctaacgagtaagcaaggcggattgacggatcatccgggtcgctataaggtaaggatGgtcttaacactgaatcttt strong Subset I ybgI -29 742021 1 forward b0710_742021 Upstream Sense Gene 742050 742793 forward b0710 tcttaatatgtcaaaagattggctatcgacgaactggcgaggtaacgctatgttaacggtgTagctatcagaatacggaag strong Subset I ybjP -55 903745 1 reverse b0865_903745 Upstream Sense Gene 903175 903690 reverse b0865 cttgtttgctaagccttcgatctcaaaagcattatcagactgatacgctattattgaaagGatatcattattatcgtagaa strong Subset II flu -68 2069495 1 forward b2000_2069495 Upstream Sense Gene 2069563 2072682 forward b2000 agggaacaacagaaccacaattcagaaactcccacagccggacctccggcactgtaaccctTtacctgccggtatccacgt strong Subset II alr -130 4263675 1 forward b4053_4263675 Upstream Sense Gene 4263805 4264884 forward b4053 aacagtgatttaaaaggcatcgcggaaattattatcggtaaacaacgtaacggcccaatcgGgacggtacgcctgaccttt strong Subset II ampH -32 395543 1 reverse b0376_395543 Upstream Sense Gene 394354 395511 reverse b0376 acactattattgcactaattcgccctttgcaatctatcaatgagtagtataaatacgctcAgttaccttcattcaatctat strong Subset II arcB -24 3351071 1 reverse b3210_3351071 Upstream Sense Gene 3348711 3351047 reverse b3210 gaattccgcatttctcacacaatttataacgtaactgtcagaattgggtattattggggcAggttgtcgtgaaggaattcc strong Subset II asnS -59 988267 1 reverse b0930_988267 Upstream Sense Gene 986808 988208 reverse b0930 tctttcgctgcatttgcgaattctgcttgtctgattgcagatgccaggtaacataggtatCcccccatttacgggtggaca strong Subset II aspS -94 1948640 1 reverse b1866_1948640 Upstream Sense Gene 1946774 1948546 reverse b1866 ggcgttccagcgcgggccaggctcttacggtgcggcagaatttccagtataatagccgccTtttttcattcagttgtgaca strong Subset II avtA -33 3737695 1 forward b3572_3737695 Upstream Sense Gene 3737728 3738981 forward b3572 gcaccgctcactcttcaacagaccgatttgcaccccagcaaatgtagcgttattgttacctTccttgctacagagttcgac strong Subset II cpxP -35 4103808 1 forward b4484_4103808 Upstream Sense Gene 4103843 4104343 forward b4484 ctttacgttgttttacaccccctgacgcatgtttgcagcctgaatcgtaaactctctatcgTtgaatcgcgacagaaagat strong Subset II csrA -130 2817298 1 reverse b2696_2817298 Upstream Sense Gene 2816983 2817168 reverse b2696 attaacgctatcgacaacgataaagtcaggttgaagttgtgtatatcggctaaacttaggTttaacagaatgtaatgccat strong Subset II cycA -84 4427803 1 forward b4208_4427803 Upstream Sense Gene 4427887 4429299 forward b4208 aattaacattagatctaaatcttagtattcatcccgcgtattgttacctaatatcgatgagTcccgatacagattcgtcgt strong Subset II dcrB -38 3607940 1 forward b3472_3607940 Upstream Sense Gene 3607978 3608535 forward b3472 aaatcaacgctttgcaggcgagttaaaggttcgttatcagagttgtgataagatggatgaaTgagccgttatggccgttta strong Subset II degQ -90 3378675 1 forward b3234_3378675 Upstream Sense Gene 3378765 3380132 forward b3234 atttttcgggcgcagccattgcgccctcctcttctctccctccccgactatcatttaatctGgtgtctcattgttagccgt strong Subset II degQ 46 3378811 1 forward b3234_3378811 Upstream Sense Gene 3378765 3380132 forward b3234 cgagagcaggaataatgaaaaaacaaacccagctgttgagtgcattagcgttaagtgtcggGttaactctctcggcgtcat strong Subset II dfp -30 3810724 1 forward b3639_3810724 Upstream Sense Gene 3810754 3811974 forward b3639 tcgcaaagtgaatctcaggtgaaggcacgacaacaaaagtattgtgataaaatcgccaactTctggtgtcaccctacagga strong Subset II dgkA -31 4254629 1 forward b4042_4254629 Upstream Sense Gene 4254660 4255028 forward b4042 gctcatgtttcgcgcggcgctacgcaaacccgaatcatcggatttaacggtacactgatatTgacgctcataatgtaaaaa strong Subset II dkgA -54 3154591 1 forward b3012_3154591 Upstream Sense Gene 3154645 3155472 forward b3012 cgcccgctaagctttttacgcctcaaactttcgttttcgggcatttcgtccagacttaagtTcacaacacctcaccggagc strong Subset II dnaB -31 4262306 1 forward b4052_4262306 Upstream Sense Gene 4262337 4263752 forward b4052 tgttgccatgtgtcctccagaacgtatcgtcagggtctgcttcatatgataaagtttcgacCcattctttatctcggtaac strong Subset II ebgR -29 3219459 1 forward b3075_3219459 Upstream Sense Gene 3219488 3220471 forward b3075 aaacgcgctttatttactgaaaacaggtgacccgataagcacttcctctacaatgggggcgCacatcagggaaagtaaaaa strong Subset II eno -78 2906041 1 reverse b2779_2906041 Upstream Sense Gene 2904665 2905963 reverse b2779 gcaggctttgtgaaagccgccagcgagttccagaaacgtcaggcgaagtaagtaaaaaagTtagagcggcaacgcgtaccc strong Subset II fabI -82 1349145 1 reverse b1288_1349145 Upstream Sense Gene 1348275 1349063 reverse b1288 cctgctccggtcggacctggcaactatagctactcacagccaggttgattataataaccgTttatctgttcgtactgttta strong Subset II ffh -58 2745875 1 reverse b2610_2745875 Upstream Sense Gene 2744456 2745817 reverse b2610 aggtgaacgctgctccaaccgttgcataacaacaaagacgccttcatgttatactgcggcAaaatactgatgatgtgtcgc strong Subset II folD -40 557004 1 reverse b0529_557004 Upstream Sense Gene 556098 556964 reverse b0529 tcacgcgataaatctgaaacgaaacctgacagcgcgccccgcttctgacaaaataggcgcAtccccttcgatctacgtaac strong Subset II galE -26 791304 1 reverse b0759_791304 Upstream Sense Gene 790262 791278 reverse b0759 gattccactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcAtaccataagcctaatggagc strong Subset II galF -24 2112375 1 reverse b2042_2112375 Upstream Sense Gene 2111458 2112351 reverse b2042 agtaatcaattcagggtaattgatgctggcgaaaaaaatcgaacaagctataattcagcaAccattttacaggtggatgaa strong Subset II gapA -36 1860759 1 forward b1779_1860759 Upstream Sense Gene 1860795 1861790 forward b1779 gtcgcaatgattgacacgattccgcttgacgctgcgtaaggtttttgtaattttacaggcaAccttttattcactaacaaa strong Subset II gdhA -12 1840383 1 forward b1761_1840383 Upstream Sense Gene 1840395 1841738 forward b1761 tcgaaaactgcaaaagcacatgacataaacaacataagcacaatcgtattaatatataaggGttttatatctatggatcag strong Subset II glk -36 2507484 1 reverse b2388_2507484 Upstream Sense Gene 2506483 2507448 reverse b2388 tttacagggagcctgcctttccggcgttgttgttatgcccccaggtatttacagtgtgagAaagaattattttgactttag strong Subset II gmhB -27 222806 1 forward b0200_222806 Upstream Sense Gene 222833 223408 forward b0200 atcaatcaggtttatgcgaagagcactttcttgcaggtcgaaacatgcgatactagcgtcaCatgccttattaaggagcta strong Subset II gsp -39 3136583 1 reverse b2988_3136583 Upstream Sense Gene 3134685 3136544 reverse b2988 atgattagtctgacctctgtccggttaatgtcgctgagcaggtaatcagagcacaacaatTacgccaactgcttaggttgt strong Subset II hdeD 16 3655034 1 forward b3511_3655034 Upstream Sense Gene 3655018 3655590 forward b3511 attgatagcaggggattttcttcttaattttatagggtggttctatgttatatatagataaGgcaacaattttgaagtttg strong Subset II holD -22 4605804 1 forward b4372_4605804 Upstream Sense Gene 4605826 4606239 forward b4372 ctggcggcgattatagccatatgttggcgcggtatcgacgaatttgctatatttgcgccccTgacaacaggagcgattcgc strong Subset II hupA -45 4198259 1 forward b4000_4198259 Upstream Sense Gene 4198304 4198576 forward b4000 gcgaaaaaaagtggctatcggtgcgtgtatgcaggagagtgctattctggcatttccgtcgCactcgatgcttagcaagcg strong Subset II hybO -26 3144309 1 reverse b2997_3144309 Upstream Sense Gene 3143165 3144283 reverse b2997 gtgtggtaaatggcgcatcgatcgcattattgattttgcgattgaggcaaaatatatgccAggtcttcgcaacggaataac strong Subset II insA-5 -16 1977255 1 reverse b1894_1977255 Upstream Sense Gene 1976964 1977239 reverse b1894 agtatgacttatacatttatgggtgatgctgccaacttactgatttagtgtatgatggtgTttttgaggtgctccagtggc strong Subset II kefA -47 485713 1 forward b0465_485713 Upstream Sense Gene 485760 489122 forward b0465 tttttcctggacattttcgtcgttgctattctggttcactgcgtcgtgatattcttgcggtTtgactttttcaggtcgttc strong Subset II kup -213 3929126 1 forward b3747_3929126 Upstream Sense Gene 3929339 3931207 forward b3747 cgaactgctcaggcgggaaattctttccgctaataaatgagggtgagccataatgaagtggCgtcctttcgtcaaaagttc strong Subset II kup -57 3929282 1 forward b3747_3929282 Upstream Sense Gene 3929339 3931207 forward b3747 caggttaatgtggccgcatttaggagtacgattttgccgttaatcgtgcatactgtgcgctTttttgtgggccaagggact strong Subset II lipA -85 659524 1 reverse b0628_659524 Upstream Sense Gene 658474 659439 reverse b0628 ttacattttcgcgaccgctttggctgctttcaggtccgtttcaatgatatactgccagtcGttaattcaaaaatagttgat strong Subset II lpxC -29 106528 1 forward b0096_106528 Upstream Sense Gene 106557 107474 forward b0096 aatttgggtttcgaggctctttgtgctaaactggcccgccgaatgtatagtacacttcggtTggataggtaatttggcgag strong Subset II ltaE -26 908543 1 reverse b0870_908543 Upstream Sense Gene 907516 908517 reverse b0870 gacgcggtgatgaagtgatcgaactggcgaaaacaaactggctaaggtaaaaagggtggcAtttcccgtcataataaggac strong Subset II rraA -27 4117380 1 reverse b3929_4117380 Upstream Sense Gene 4116868 4117353 reverse b3929 aaatatcaattaacaattgatgattttgccaacagcccacatagcgcgatatactgaaaaTtctcgcagcaactgaatgtt strong Subset II metG -31 2192291 1 forward b2114_2192291 Upstream Sense Gene 2192322 2194355 forward b2114 tttacctgaagaatatagagaagtacttacttaacattttcccatttggtactatctaaccCcttttcactattaagaagt strong Subset II mgsA -27 1026265 1 reverse b0963_1026265 Upstream Sense Gene 1025780 1026238 reverse b0963 tgcctgtgcgcaggctttttcggtctttatcttgcagcgataagtgcttacagtaatctgTaggaaagttaactacggatg strong Subset II mioC -21 3924499 1 reverse b3742_3924499 Upstream Sense Gene 3924035 3924478 reverse b3742 tttaatcccatacttttccacaggtagatcccaacgcgttcacagcgtacaatacgccacTcttaataaaggtggcggttt strong Subset II mipA -34 1864530 1 reverse b1782_1864530 Upstream Sense Gene 1863750 1864496 reverse b1782 ctttaaaaaatgaaaacgtaaaaaggttgggtttcgatgtattgacgggtaaactttgtcGcccgctaaacatttgtttaa strong Subset II mrcA -45 3520848 1 forward b3396_3520848 Upstream Sense Gene 3520893 3523445 forward b3396 tatcacccgtcactctgacgggtatatcaatgcgtctggcttgcctttatactaccgcgcgTttgtttataaactgcccaa strong Subset II mscL -25 3436021 1 forward b3291_3436021 Upstream Sense Gene 3436046 3436456 forward b3291 caaggattaattaaattcattcctggcaggaaaatggcttaacatttgttagacttatggtTgtcggcttcatagggagaa strong Subset II mscS -64 3067893 1 reverse b2924_3067893 Upstream Sense Gene 3066969 3067829 reverse b2924 tcagatgagaaatctgtgatctatttggcaaaattatgctttattgtttacccttgtcagActgcccgtcataaggcggcg strong Subset II ybeH -68 657186 1 forward b0625_657186 Upstream Sense Gene 657254 657481 forward b0625 accgccaataaaaactgctaaaagaagttgtaacactgcaaaatcctgctatttgatttgtAtgagtgataagtgtaacgc strong Subset II ompW -29 1312015 1 forward b1256_1312015 Upstream Sense Gene 1312044 1312682 forward b1256 tcatatgtaatgtgatctatgtaggatcatttgttactccaatgtaggtatattcgtcacgTttttataaccataacgacg strong Subset II ompX -33 849640 1 forward b0814_849640 Upstream Sense Gene 849673 850188 forward b0814 ggcccgttagacatcacaaatcgcgaagagtttcccattaatttttgatatatttaaaactTaggacttatttgaatcaca strong Subset II pdxK -41 2535300 1 reverse b2418_2535300 Upstream Sense Gene 2534408 2535259 reverse b2418 attaccttatccttgttttgtgatagccgatttgactgccagaatcaggtaaagtttcggTtggattacgatgaggatcat strong Subset II pdxK -86 2535345 1 reverse b2418_2535345 Upstream Sense Gene 2534408 2535259 reverse b2418 tgtcattagtagtgtaatgaccagacaaatgattttcttcattgaattaccttatccttgTtttgtgatagccgatttgac strong Subset II pepQ -14 4029170 1 forward b3847_4029170 Upstream Sense Gene 4029184 4030515 forward b3847 gcagaaatcacgctctggatgaacgatgtgctaagatgcggagacttaaggtcaaaaaaacAgaagggtaaaaaatggaat strong Subset II pitA -30 3635635 1 forward b3493_3635635 Upstream Sense Gene 3635665 3637164 forward b3493 atcaaaaaaagtctatatttcactttgcccgcgccgcgaaagtcactgataatgcgccgcgTtcatgtcctcaaaatggcg strong Subset II pmbA -14 4455968 1 forward b4235_4455968 Upstream Sense Gene 4455982 4457334 forward b4235 gaggctaatgttaccagttaagatgcgcactgaaaaacggttctctgttagacttcagagaAactctctacattatggcac strong Subset II ppa -34 4447709 1 reverse b4226_4447709 Upstream Sense Gene 4447145 4447675 reverse b4226 aggaaaatgaagacgaaaacaagcgaagacattcggcgcgagttggctataatactcggcActtgtttgccacatattttt strong Subset II ppiC -28 3957864 1 reverse b3775_3957864 Upstream Sense Gene 3957555 3957836 reverse b3775 accagccactccctgactgacaattacgttagcatctgcggatcatgctaaaatcgccgcCtgacaattattcactcaagg strong Subset II prkB -180 3482332 1 forward b3355_3482332 Upstream Sense Gene 3482512 3483381 forward b3355 aacgctggaaaatttaattgaaagctttgtgttacgtgaaggcaccgattatggtgaacatGagcgtacacttgaacagaa strong Subset II proC -42 404910 1 reverse b0386_404910 Upstream Sense Gene 404059 404868 reverse b0386 ggtaatcctctattgtgtcgcgcttttgccttccggcatagttctgtttatgcttctgccAgcgattatcaaaacaatgaa strong Subset II ptrB -26 1926889 1 reverse b1845_1926889 Upstream Sense Gene 1924803 1926863 reverse b1845 tctaagcaatgactcccctgtttcgcttgcatccccggtgagttttgccacccttataagAtgtttcaaccagaaagaaca strong Subset II pykA -104 1935569 1 forward b1854_1935569 Upstream Sense Gene 1935673 1937115 forward b1854 tgataagcagttacttaatttaagtgacgatcgctaaaaacgactgtcactgtcctaatctTatacgacatccgaatgaga strong Subset II pykF -78 1753644 1 forward b1676_1753644 Upstream Sense Gene 1753722 1755134 forward b1676 ttcctctgcacgctttttcgatgtcacctatccttagagcgaggcaccaccactttcgtaaTaccggattcgctttccggc strong Subset II pyrG -47 2907735 1 reverse b2780_2907735 Upstream Sense Gene 2906051 2907688 reverse b2780 cgaagaggagggataatgaaagtttgtggcacaggtcatgttcgggtatactgctttcccGtcttggttattccatcgtct strong Subset II qor -73 4262327 1 reverse b4051_4262327 Upstream Sense Gene 4261271 4262254 reverse b4051 gcgttcgcggggttcagcctgctgtttgttgaagggtttatttcctgccatagtgaatggAgttaccgagataaagaatgg strong Subset II ribB -252 3182740 1 reverse b3041_3182740 Upstream Sense Gene 3181835 3182488 reverse b3041 aaccagaattatgtgaagctatgcgttgctgccgctaatcattagcgttatagtgaatccGcttattctcagggcggggcg strong Subset II rna -31 644257 1 reverse b0611_644257 Upstream Sense Gene 643420 644226 reverse b0611 aatcatcacgcccgccaggtaagcccacctggcgggcttttttatgatttaatagatagtAttcagtgtatgtatgagttc strong Subset II rne -54 1143644 1 reverse b1084_1143644 Upstream Sense Gene 1140405 1143590 reverse b1084 cgataaccgtgaggttggcgacgcgactagacacgaggccatcggttcacacccggaaagGcgttactttgcccgcagctt strong Subset II rpmE -105 4124931 1 forward b3936_4124931 Upstream Sense Gene 4125036 4125248 forward b3936 cacattgccgtagaagagtgcggatcagtttgcatacgctggttaatttctgtatgatttcGcgccttcgtacgaaatgat strong Subset II rpmF -29 1146561 1 forward b1089_1146561 Upstream Sense Gene 1146590 1146763 forward b1089 acccatttgccgtattagccagcttaaagcgtaagtaattggtgctccccgttggatcgggGataaaccgtaattgaggag strong Subset II sbmC -45 2079331 1 reverse b2009_2079331 Upstream Sense Gene 2078813 2079286 reverse b2009 gcagactggcaggagtgcgagtctgctcgcataatcaacactcattccttgtggttttaaTtttgcaactatactgtatat strong Subset II serS -64 938587 1 forward b0893_938587 Upstream Sense Gene 938651 939943 forward b0893 ggatcaaaatagccccataaaacgctaccgttaatgttatcgttgcggtaatgttgttactGtatccctgtggtcgcaggc strong Subset II sodC -24 1722703 1 reverse b1646_1722703 Upstream Sense Gene 1722158 1722679 reverse b1646 gtaagcacttttaggaatagccgccgttcaaaaatgtgtcactggtttacacttattcagGaatgcacaatgaacggaggt strong Subset II sstT -83 3237883 1 forward b3089_3237883 Upstream Sense Gene 3237966 3239210 forward b3089 ctctctttaaaatccagcatttttcgcttcccgaagctgtaactttccttatactcgacctTgcaaacactttgttacatc strong Subset II talB -47 8191 1 forward b0008_8191 Upstream Sense Gene 8238 9191 forward b0008 cctggcgataaccgtcttgtcggcggttgcgctgacgttgcgtcgtgatatcatcagggcaGaccggttacatccccctaa strong Subset II tesB -40 474425 1 reverse b0452_474425 Upstream Sense Gene 473525 474385 reverse b0452 cccgtaattcagaccattgcacccatcggaccagtagcaaatttgcgttatactcaactcActttggcttgctgcggcagc strong Subset II tig -17 454340 1 forward b0436_454340 Upstream Sense Gene 454357 455655 forward b0436 cccggttccgcgaagccaacaacctgtgcttgcggggtaagagttgaccgagcactgtgatTttttgaggtaacaagatgc strong Subset II tig -42 454315 1 forward b0436_454315 Upstream Sense Gene 454357 455655 forward b0436 ggaatgtgattgattataagaacatcccggttccgcgaagccaacaacctgtgcttgcgggGtaagagttgaccgagcact strong Subset II tpiA -62 4109592 1 reverse b3919_4109592 Upstream Sense Gene 4108763 4109530 reverse b3919 ggtttgaataaatgacaaaaagcaaagcctttgtgccgatgaatctctatactgtttcacAgacctgctgccctgcggggc strong Subset II trxB -28 931301 1 reverse b0888_931301 Upstream Sense Gene 930308 931273 reverse b0888 attgttaacaaaatcgtcatactctttttttacgtctgtaaattccctacaatcctgcccAttgtctgccaacaactatgg strong Subset II tyrS -64 1715310 1 reverse b1637_1715310 Upstream Sense Gene 1713972 1715246 reverse b1637 atgcaaaaatcttgctttaatcgctggtactcctgattctggcactttattctatgtctcTttcgcatctggcgaaaagtc strong Subset II ucpA -41 2542686 1 reverse b2426_2542686 Upstream Sense Gene 2541854 2542645 reverse b2426 tttcctgaattagtgagctgatccgcagcaatattttgtttatcctgtattttcagagggAatggagtgtaacgctctgta strong Subset II ucpA -52 2542697 1 reverse b2426_2542697 Upstream Sense Gene 2541854 2542645 reverse b2426 tggattgagattttcctgaattagtgagctgatccgcagcaatattttgtttatcctgtaTtttcagagggaatggagtgt strong Subset II uspE -39 1396685 1 reverse b1333_1396685 Upstream Sense Gene 1395696 1396646 reverse b1333 tattgatctggcagaaggttcatcactgtttcattcaccagatatgggttaatcttttaaTtacaaactgcgttgacagtt strong Subset II uspF -22 1433665 1 reverse b1376_1433665 Upstream Sense Gene 1433209 1433643 reverse b1376 aattaaaaatgtgaactccgtcattacacaaaaagtgtcatctggcgttacactttatgcGgatactaaaacaggaggttt strong Subset II uspG -36 641126 1 reverse b0607_641126 Upstream Sense Gene 640662 641090 reverse b0607 aaacagttcgtaaggaaaaagaaccagacaaatatcagggataaatattataatcatggcGaatgatttgttcatgattaa strong Subset II mlaA -128 2463157 1 reverse b2346_2463157 Upstream Sense Gene 2462274 2463029 reverse b2346 ttctgtttctatagaatcaagtagcctacagggcggcgattaccaggctatgatcaaatcAgcaaatcagggcgtctggac strong Subset II wrbA -50 1066981 1 reverse b1004_1066981 Upstream Sense Gene 1066335 1066931 reverse b1004 ataaatcaaataagtggttgtgaaatttgcactctgaaaaggacgtcttatctttaaataAgtggtagcgaatcgctacgg strong Subset II yabI -81 71270 1 forward b0065_71270 Upstream Sense Gene 71351 72115 forward b0065 agtttcgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataattggtAacgaatcagacaattgacg strong Subset II can -33 142703 1 reverse b0126_142703 Upstream Sense Gene 142008 142670 reverse b0126 ttacgttcttacactttatctgtggtttaaatcgtcccggagttgccctatattagccaaAcgtaattatttggttacagg strong Subset II cdaR -17 182446 1 forward b0162_182446 Upstream Sense Gene 182463 183620 forward b0162 tcatcatcctttaggcatttgcacaatgccgtacgttacgtacttccttatgctaagccgtGcataacggaggacttatgg strong Subset II ispU -119 194784 1 forward b0174_194784 Upstream Sense Gene 194903 195664 forward b0174 tccggctacagagagtcgcgctatttgttagcgtagggcttcagtgatatagtctgcgccaTctgatcgtaagtagttggc strong Subset II yafV -27 240216 1 reverse b0219_240216 Upstream Sense Gene 239419 240189 reverse b0219 atttgttatcaatttattctgcgctaaggcaactgcctgataaggtgttaaagttataaaAcccttcgcataaaggagttg strong Subset II yafZ -25 267254 1 reverse b0252_267254 Upstream Sense Gene 266408 267229 reverse b0252 aacccatccctgttacttccctgcccctgtcgccgatgcgacggggatcccttttatttgTtttcccgttatgaggagtct strong Subset II matC -93 309343 1 reverse b0292_309343 Upstream Sense Gene 308582 309250 reverse b0292 aatggtaccaccgcagtaacagattacagcactctaccggaaggcatctggagcggcgacGttagcgtacagttcgacgcg strong Subset II iraP -24 400586 1 forward b0382_400586 Upstream Sense Gene 400610 400870 forward b0382 gtcataaaaataatacttccagacactatgaagttgtgaaacataatgttaacttctccatActttggataaggaaataca strong Subset II yaiE -29 407372 1 forward b0391_407372 Upstream Sense Gene 407401 407685 forward b0391 gcggaattactggtgtaattttgcgtgacagccagcgcctctggcccctatagtgaagtagAtgttcaactaccaaacagg strong Subset II yajQ -25 443882 1 forward b0426_443882 Upstream Sense Gene 443907 444398 forward b0426 aagggatacgtcctggtgcaggactgtcggttatttaactttgcgggtattatgcttcgcaTcaaaaatgaagggagagga strong Subset II yajR -21 445911 1 reverse b0427_445911 Upstream Sense Gene 444526 445890 reverse b0427 aaatatttactaaaaaatccgcatgtttaccccattcgtttgccgctttacactagtcgcGaatttaaaacagaggtggta strong Subset II ybaL -58 502520 1 reverse b0478_502520 Upstream Sense Gene 500786 502462 reverse b0478 tctgcaaaattcaataattattcatgaacatcatcaatgaaattgtcataaactattaccTgtaattttggttttcccggc strong Subset II ybeB -36 668295 1 reverse b0637_668295 Upstream Sense Gene 667942 668259 reverse b0637 cgaaagccgattcggcgacaattgtcccgaaatcgcctctggttcaggtatactgacagaCcatttttatctatttgattc strong Subset II ybeL -25 674216 1 forward b0643_674216 Upstream Sense Gene 674241 674723 forward b0643 ttacagagtttgtgggcgtattagcaaagcaaggaacaaagaacgtctattattatagtcaGttaacgacccgggagatga strong Subset II ybeH -68 657186 1 forward b0625_657186 Upstream Sense Gene 657254 657481 forward b0625 accgccaataaaaactgctaaaagaagttgtaacactgcaaaatcctgctatttgatttgtAtgagtgataagtgtaacgc strong Subset II ybhQ -29 823824 1 forward b0791_823824 Upstream Sense Gene 823853 824263 forward b0791 cggcgtcacaaaaaggtgcggtcttacggaattttccgtaaagttcggtactctgagtaagTagagataaattcttcagga strong Subset II ybjP -31 903721 1 reverse b0865_903721 Upstream Sense Gene 903175 903690 reverse b0865 aaaagcattatcagactgatacgctattattgaaaggatatcattattatcgtagaacgcTttcagagcgatcgcttataa strong Subset II ybjQ -77 903739 1 forward b0866_903739 Upstream Sense Gene 903816 904139 forward b0866 gctgtagcgcataatgatttccttataagcgatcgctctgaaagcgttctacgataataatGatatcctttcaataatagc strong Subset II ycaO 167 955688 1 reverse b0905_955688 Intra Sense Gene 954095 955855 reverse b0905 gctgaatcccgtgcctaacgtctggtctgtacatattcgcgacaaagagtgcgcactgtgTtttaccaacggtaaaggcgc strong Subset II ycbB -117 980153 1 forward b0925_980153 Upstream Sense Gene 980270 982117 forward b0925 ttctttaaacttctttacattaggttatgtaaaaacgtatcggcgtttatatactgaagatAagcctgatgagtaacaggc strong Subset II matP -26 1017682 1 forward b0956_1017682 Upstream Sense Gene 1017708 1018160 forward b0956 aaagctcacaggatggagattcttttcttcactggcctaaaaagctgatattctgtaaagaGttacacggtaacattgaga strong Subset II ycbJ -38 970937 1 forward b0919_970937 Upstream Sense Gene 970975 971868 forward b0919 ttcctcaatttttcttttcaacaattgatctcattcaggtgacatcttttatattggcgctCattatgaaagcagtagctt strong Subset II ycbK -54 982244 1 forward b0926_982244 Upstream Sense Gene 982298 982846 forward b0926 cccgtcactgctggggttgagtcatcttgacgtctgctttacgggcggttaaggtgcctctTgtgcgccagaagtgcatat strong Subset II yceA 121 1116151 1 forward b1055_1116151 Intra Sense Gene 1116030 1117082 forward b1055 gcgaaccgcgaaccaccatttcgttttacaagtatttccacatcgccgatcctaaggcgacCcgtgacgctttatatcagc strong Subset II bssS -67 1120245 1 reverse b1060_1120245 Upstream Sense Gene 1119924 1120178 reverse b1060 atttatctgtttccccctttaaaaattcggtgaatacccttacttattggtatactgaagTtgcttcagataaaaacgcat strong Subset II ycgB -45 1236509 1 reverse b1188_1236509 Upstream Sense Gene 1234932 1236464 reverse b1188 aatcgcaaagaaaaaaattctccggcgacgcggtttttaacaggtgttctatgcttgaaaTgaggtgctccacacagagag strong Subset II ycgE -54 1213336 1 reverse b1162_1213336 Upstream Sense Gene 1212551 1213282 reverse b1162 tcatccaatttagctgaaatcttatttatactttgtacaattttagcgtatattgtacaaAgtattattgggtcgtgtaca strong Subset II ycgL -72 1226832 1 forward b1179_1226832 Upstream Sense Gene 1226904 1227230 forward b1179 ttcctgcgttcggtaaaatcacgttgcggcatttttgccggggggattacttataaaggggGcatggactcaacaaaccgt strong Subset II iraM -87 1211313 1 reverse b1160_1211313 Upstream Sense Gene 1210903 1211226 reverse b1160 agattccttgctttaaattttattttatataagccatcattttaattaatttatttttttGaggggggggtaatatactca strong Subset II ychH -53 1257961 1 forward b1205_1257961 Upstream Sense Gene 1258014 1258292 forward b1205 agggttgtaattgtgatcacgcccgcacataacccactgggtgttgtctatactttacacaTaaggaagaggggtattccc strong Subset II ychJ -46 1288401 1 reverse b1233_1288401 Upstream Sense Gene 1287897 1288355 reverse b1233 cgcaagattcccctggaatgcaatcgtagccacatcgctactgctcggttaacatagtgcTactcaggcggttaatacgcc strong Subset II ychO 24 1273172 1 forward b1220_1273172 Upstream Sense Gene 1273148 1274401 forward b1220 tttgataataacaatgatggtctgccggatttaggcatggctcccgaaaatcatgatggggAaaaacactttgctgaaatt strong Subset II acnA -51 1333804 1 forward b1276_1333804 Upstream Sense Gene 1333855 1336530 forward b1276 ctcttttatcaatttgggttgttatcaaatcgttacgcgatgtttgtgttatctttaatatTcaccctgaagagaatcagg strong Subset II trpH -32 1321212 1 forward b1266_1321212 Upstream Sense Gene 1321244 1322125 forward b1266 cgatgattaattgtcaacagctcatttcagaatatttgccagaaccgttatgatgtcggcgCaaaaaacattatccagaac strong Subset II puuD -68 1359076 1 forward b1298_1359076 Upstream Sense Gene 1359144 1359908 forward b1298 atgtttgtcaaatgttaaattgagtttgcaaaaatgaaaacccactgctagattgaaaaaaTattgaacataaaggtcatt strong Subset II ydaN -25 1406049 1 forward b1342_1406049 Upstream Sense Gene 1406074 1407057 forward b1342 atttcagggtaatggggtgatgagatgttgcgtaacagggccagaaggctagactacaaaaTaatgcgttgatgatggagg strong Subset II ydcR -25 1508002 1 forward b1439_1508002 Upstream Sense Gene 1508027 1509433 forward b1439 ggtttaattacagttaacgaaaagttgtcatttttaacaactgatatagactgccgaatcaTctgcacataattacgattc strong Subset II ydeH -27 1621901 1 reverse b1535_1621901 Upstream Sense Gene 1620984 1621874 reverse b1535 cttcggatttctatgaaaatattgacgtaattttgcttttctctcgttagaatagcgcgcAcaaggaactgtgaaaaagga strong Subset II ydfG -26 1625515 1 forward b1539_1625515 Upstream Sense Gene 1625541 1626287 forward b1539 gagtgcaatcttgcaatccagtattacccgctcttaagcatcccgtgctatgttattgacaCacaaaagcgttgaggaaca strong Subset II ydfH -26 1626350 1 forward b1540_1626350 Upstream Sense Gene 1626376 1627062 forward b1540 tttatacccggcgtaactgccgggttattgcttgtcacaaaaaagtggtagactcatgcagTtaactcactcacaagcaag strong Subset II gnsB -64 1635870 1 reverse b1550_1635870 Upstream Sense Gene 1635633 1635806 reverse b1550 tgtgtaaaatttagactatcgtatgttgattattgcgatgtttcatcttatcttttacacGtttgcaccatataatcgact strong Subset II ydgA -58 1687818 1 forward b1614_1687818 Upstream Sense Gene 1687876 1689384 forward b1614 gtttacaacaagctgtaagagcttactgaaaaaattaacatctcttgctaagcttattaaaGgcttataacaccttcaggc strong Subset II tqsA -23 1671914 1 forward b1601_1671914 Upstream Sense Gene 1671937 1672971 forward b1601 tacctgagcggtttgattttcgttatgatgacggagcgaaaaagacattattattagcaaaGgaagaaaaaacggggacaa strong Subset II yeaL -29 1872347 1 forward b1789_1872347 Upstream Sense Gene 1872376 1872822 forward b1789 tttatgcaaaaaacgtaaagattttctacttccttcctgcagcaagcgtaaagtaagcaggCttattattttttggcaagg strong Subset II yfaY -22 2361677 1 reverse b2249_2361677 Upstream Sense Gene 2360453 2361655 reverse b2249 ttctgtcgcgccattcagtttcttactacgccttatctccctttgcgttatagtgattcgAtaacaaaagcaggagataac strong Subset II yfcZ -45 2459001 1 reverse b2343_2459001 Upstream Sense Gene 2458672 2458956 reverse b2343 tatccgattttgcagaattaacaactggagcagcactttccggaagcgtaaaatatccacAacgtttatctggcaccttgg strong Subset II yfgC -68 2614048 1 forward b2494_2614048 Upstream Sense Gene 2614116 2615579 forward b2494 ggattcaggaaactgaaaagtcatttgagtgggctaatcttcgccgttacactcaaaggcgGcgcggtgggaacgatattt strong Subset II yfgM -90 2637395 1 reverse b2513_2637395 Upstream Sense Gene 2636685 2637305 reverse b2513 ccgcgttgctgtggtgctgggtgagtctgaagtggctaacggcacagcagtagtgaaggaTttgcgctctggtgagcaaac strong Subset II yfgM -119 2637424 1 reverse b2513_2637424 Upstream Sense Gene 2636685 2637305 reverse b2513 cagtttgcccgtgctgataaatggggtgcccgcgttgctgtggtgctgggtgagtctgaaGtggctaacggcacagcagta strong Subset II yfgM -150 2637455 1 reverse b2513_2637455 Upstream Sense Gene 2636685 2637305 reverse b2513 gaccaaccacggcggcggcaactttaagaaacagtttgcccgtgctgataaatggggtgcCcgcgttgctgtggtgctggg strong Subset II yfhM -39 2650348 1 reverse b2520_2650348 Upstream Sense Gene 2645348 2650309 reverse b2520 ttcggattgtatgggcgtgatactgaattacataacgtaaattctcacgcataataattaTtcgacgttgctaacgggcca strong Subset II ygaM -15 2798141 1 forward b2672_2798141 Upstream Sense Gene 2798156 2798497 forward b2672 agaaaagtccataaagccgcgatgaacctcagttaagaaaattatggtctacactgaaaatTacatcgaattctaatgggg strong Subset II ygbI 9 2859277 1 reverse b2735_2859277 Upstream Sense Gene 2858489 2859286 reverse b2735 tgaactaagcgttagttgcgccgcgcacgtttcgcaggcaaatagcgtagaatgtcagcaGgacaaaggaaggagcaaaag strong Subset II ygeV -62 3003870 1 reverse b2869_3003870 Upstream Sense Gene 3002030 3003808 reverse b2869 gaaaatgataaaaatcttatgtttttatcaaagccaatttcgcctgagttaatatcatcaTgatctgtgaaccatcaacgt strong Subset II ygfY -29 3039121 1 reverse b2897_3039121 Upstream Sense Gene 3038826 3039092 reverse b2897 cgcgatggtgtttactgatattcccgtaaaagaaggcgaaaaacacgttacaatagccggGtactggattttcgtgagaca strong Subset II ygfZ -33 3039302 1 forward b2898_3039302 Upstream Sense Gene 3039335 3040315 forward b2898 aggcacagatcgcgtagtgaaagcacttgcattgcctcatagctcttttaccattagtcatTaatacgccgttaagcaact strong Subset II argO -28 3066858 1 reverse b2923_3066858 Upstream Sense Gene 3066195 3066830 reverse b2923 ctgattgccaattaatattatcaatttccgctaataacaatcccgcgatatagtctctgcAtcagatacttaattcggaat strong Subset II yghB -34 3151551 1 forward b3009_3151551 Upstream Sense Gene 3151585 3152244 forward b3009 tcttaaattgttgcgtccgggatcaaggcgtcccggacgattcaggagtacaataggcagaTaaaggcttaaacgctgttc strong Subset II yghU -27 3136722 1 forward b2989_3136722 Upstream Sense Gene 3136749 3137615 forward b2989 tggcgcaaagggttaaaaaattcacattctgtacagcaagtgacctgctacactgcttcaaCactaccactcagaaggcaa strong Subset II ygjR -29 3235286 1 forward b3087_3235286 Upstream Sense Gene 3235315 3236319 forward b3087 gtgagcatggctgtccggcgcagaaataatgcgtatctgcgcacgtcgaagatgaaaaaggCgtgctacattgacgacaga strong Subset II yhbT -92 3299390 1 reverse b3157_3299390 Upstream Sense Gene 3298774 3299298 reverse b3157 tagttaaccttgctgcgacaatttttgatttaaggcagttaaagttgtattggtggtagcAgcaatttcatatggaattgt strong Subset II yhbY -31 3325781 1 forward b3180_3325781 Upstream Sense Gene 3325812 3326105 forward b3180 attgcgtaaatttttacgcgcctatttggtgatatatgggagatggcggtagaatgacccgTtttcaatcccaacgtaagc strong Subset II yhcB -9 3378204 1 forward b3233_3378204 Upstream Sense Gene 3378213 3378611 forward b3233 cataatcagccgcaggcatggagcctgaagccaacaccctacggaaacaaaagacaacgggAgatgttcatgacctgggaa strong Subset II yheO -66 3474528 1 reverse b3346_3474528 Upstream Sense Gene 3473740 3474462 reverse b3346 ttacaggccggatataattagtgctggaaagcggaacctccgctgtattaatttagttacCcgcatcattaatgagcctgc strong Subset II yheO -102 3474564 1 reverse b3346_3474564 Upstream Sense Gene 3473740 3474462 reverse b3346 taagaaccgccgcctgaccaggcggcggtttttttattacaggccggatataattagtgcTggaaagcggaacctccgctg strong Subset II tsgA -49 3490541 1 forward b3364_3490541 Upstream Sense Gene 3490590 3491771 forward b3364 tttagcaaccgattgcaataaaacatttaaacagatcacaaaatcacctaaaatcgcccgcTcgcggcatatcccgctatg strong Subset II insC-3 17 2068232 1 reverse b1997_2068232 Upstream Sense Gene 2067839 2068249 reverse b1997 actggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactAgtttttagactagtcattgg strong Subset II yiaF -53 3717120 1 reverse b3554_3717120 Upstream Sense Gene 3716357 3717067 reverse b3554 taccaggaagattacgtagaaagggtatcctgcaagcctgtcctggactatccttgtcacGtcagacacgcgtgtgtcgtt strong Subset II yibF -25 3760003 1 reverse b3592_3760003 Upstream Sense Gene 3759370 3759978 reverse b3592 tggaagtaacaaaccatcaacattttctgccctttttcccatcaccaggccatactgataTttttcctcgcacaaaggact strong Subset II yidL -2 3858274 1 forward b3680_3858274 Upstream Sense Gene 3858276 3859199 forward b3680 tcagattcttaaaatacaaacgtcgtatccctgaacggattgttttctgttaagttcaggtTgtgagcataattcgccgga strong Subset II ravA -38 3929154 1 reverse b3746_3929154 Upstream Sense Gene 3927620 3929116 reverse b3746 gaaaaataccccccctttgagactattttagccaccagcaagaaacgtctatactcgcaaTttacgcagaacttttgacga strong Subset II yigI -30 4002750 1 reverse b3820_4002750 Upstream Sense Gene 4002253 4002720 reverse b3820 tagccgttagttatcccttcctaaagtagaaaccaacaacaaagaagcataaaatcaacaTttcattaaccaatgaagtgt strong Subset II yihD -21 4040071 1 forward b3858_4040071 Upstream Sense Gene 4040092 4040361 forward b3858 catcagattcaccgatatcgcctcttttattgtgggattgaccctgctaacgtgtctgtctCaagagtaaggagcatcact strong Subset II yjbB -130 4225624 1 forward b4020_4225624 Upstream Sense Gene 4225754 4227385 forward b4020 aaacagggcgctcaatgagtgccctgtctctttattaatatgaaacacttatactggaaacAggctggaataatcttagcc strong Subset II poxA -25 4380641 1 forward b4155_4380641 Upstream Sense Gene 4380666 4381643 forward b4155 cgctgtttgattcctgcgtaaaatttgtctcgccgtcgcgttgcgagtagacttcgtgcccTtgtcaaaaactggagattt strong Subset II yjeI -48 4370784 1 forward b4144_4370784 Upstream Sense Gene 4370832 4371185 forward b4144 cccccgggcagaaatgtctgggggtttttcttttggtcatctttctagtataagattcagaCacggacgacgcgagtggcg strong Subset II yjfO 5 4414788 1 reverse b4189_4414788 Upstream Sense Gene 4414464 4414793 reverse b4189 ccaggtaacaattcgggaacattcccccaaagttaaattaataaggcactacactatggtTagcaggaaacgtaatagcgt strong Subset II yjgF -33 4468969 1 reverse b4243_4468969 Upstream Sense Gene 4468550 4468936 reverse b4243 aatgtggtgctggccaattaattgcggttggtaataaaagtctggctccctataatgagcCagactttttaccgctgtaat strong Subset II ylaC -38 478513 1 reverse b0458_478513 Upstream Sense Gene 478005 478475 reverse b0458 ttatgcaaaattgtggtagatctgttacttcccctctactattcccacgttaaaatagggTgttccctggaaagttgcaga strong Subset II rimO -35 877293 1 reverse b0835_877293 Upstream Sense Gene 875933 877258 reverse b0835 cctccgccagcgaatgagattgcgatacaaattttatccagaactctgtagaatccctgcCctgacctttcctgtaactga strong Subset II yliJ -39 879742 1 reverse b0838_879742 Upstream Sense Gene 879077 879703 reverse b0838 ctggtgtcatttttttgccagctgttgcttaaaagttaactttacttcaccatcggagtcCtgttcagcctgtggctgcct strong Subset II ymdC -64 1105514 1 forward b1046_1105514 Upstream Sense Gene 1105578 1106999 forward b1046 gtaaaaaccgtttcagaatttattacccgtcacgctttacccgaacaggtatactttgtctGttatgatgaagaaaacgcc strong Subset II ynaI -51 1393997 1 reverse b1330_1393997 Upstream Sense Gene 1392915 1393946 reverse b1330 ttgctacttccttccctgactattgatgatctgaatgaattgtcgcggtaaaatagccccGccaggggtttccggcatgac strong Subset II yncG -22 1524249 1 forward b1454_1524249 Upstream Sense Gene 1524271 1524888 forward b1454 ctgacgaaaaaatgacaaatccttttgctggttaacctgtgtactgtcctacacttaatctTtaaaagattgtgaggggca strong Subset II ynfB -99 1653733 1 forward b1583_1653733 Upstream Sense Gene 1653832 1654173 forward b1583 aaaatagtaacgttgttttaatcatctttgtctcttattgacatcatgtatagttatagggCgacataatatcatcaatat strong Subset II yniB -31 1807288 1 reverse b1726_1807288 Upstream Sense Gene 1806721 1807257 reverse b1726 agcgcctatcatatcgcctttaaagaatgggcgaaaacagatatctacaggtaaactaagTgaaacgacgcgtcttaatca strong Subset II yniC -56 1807348 1 forward b1727_1807348 Upstream Sense Gene 1807404 1808072 forward b1727 acttagtttacctgtagatatctgttttcgcccattctttaaaggcgatatgataggcgctTaatcataagcacggcttaa strong Subset II yobF -26 1905641 1 reverse b1824_1905641 Upstream Sense Gene 1905472 1905615 reverse b1824 gatcgagacatgtttaaaaatggcttgccataattaacgttgtatgtgataacagatttcGggttaaacgaggtacagttc strong Subset II queF -30 2923340 1 forward b2794_2923340 Upstream Sense Gene 2923370 2924218 forward b2794 gcttgtgcggtcaaatcgtccactaatttctctcttcacttaaaccagatacacttgtcgtTtagtttatctggtttatga strong Subset II yqjI -27 3214774 1 forward b3071_3214774 Upstream Sense Gene 3214801 3215424 forward b3071 ccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatAtctaattaagcaaaaggag strong Subset III acnB 47 131662 1 forward b0118_131662 Upstream Sense Gene 131615 134212 forward b0118 gaggagaaccgtcgtgctagaagaataccgtaagcacgtagctgagcgtgccgctgaggggAttgcgcccaaacccctgga weak Subset III yacL -49 134339 1 forward b0119_134339 Upstream Sense Gene 134388 134750 forward b0119 ttatttctaaaccatcgccgttccgctgtttttctccggtaaggctgcgataattacatcaAtggcgcaatgcgatttcgg weak Subset III mrcB -9 164721 1 forward b0149_164721 Upstream Sense Gene 164730 167264 forward b0149 tcttcttctgtcttgtaacagaagaacagaaaatcgggcttttgcgcctgaatattgcggaGaaaaagcatggccgggaat weak Subset III rpsB -163 189711 1 forward b0169_189711 Upstream Sense Gene 189874 190599 forward b0169 atgctgtacacagcgccaacaattattggtgtccacgacgtatttgtggtataaagcgcgcCggacttccgatccatttcg weak Subset III ispU -2 194901 1 forward b0174_194901 Upstream Sense Gene 194903 195664 forward b0174 tttttttgtataggcttcagtattcctgagtaccgtaaaccctgtcagggaataaaaaacgCgtgatgttgtctgctactc weak Subset III crl -17 257812 1 forward b0240_257812 Upstream Sense Gene 257829 258230 forward b0240 tcgaaaaacgcttgtgttaaaaatttgctaaattttgccaatttggtaaaacagttgcatcAcaacaggagatagcaatga weak Subset III matC -68 309318 1 reverse b0292_309318 Upstream Sense Gene 308582 309250 reverse b0292 acagcactctaccggaaggcatctggagcggcgacgttagcgtacagttcgacgcgacctGgaccagttaatctctctgat weak Subset III yahO -52 345656 1 forward b0329_345656 Upstream Sense Gene 345708 345983 forward b0329 cacaaagtgtcttatttccggttactggcgtttatgccctgactgaactaattattaatcaAcccaataatgtgggtgggt weak Subset III brnQ -103 418712 1 forward b0401_418712 Upstream Sense Gene 418815 420134 forward b0401 gtcatactgactgcattaacgcggtaaatcgaaaaactattcttcgccgcgcctggttgggAgtatttcccgctaaaattg weak Subset III acrB -282 483909 1 reverse b0462_483909 Upstream Sense Gene 480478 483627 reverse b0462 tcgtgcgcgcacgtctggaagaagggcttaatccaaacgctattttagtcccgcaacaggGcgtaacccgtacgccgcgtg weak Subset III ybbY -206 539583 1 forward b0513_539583 Upstream Sense Gene 539789 541090 forward b0513 gatgccgacttcgtcttcattcagccgaatagcagctatgttcttaccaatgacgatctggAatatcgccacaaagtcagc weak Subset III ybdG -23 603909 1 reverse b0577_603909 Upstream Sense Gene 602639 603886 reverse b0577 ggctatttcctctcagattctcctgatttgcataaccctgtttcagccgtcatcataggcTgctgttgtataaaggagacg weak Subset III entH -8 628515 1 forward b0597_628515 Upstream Sense Gene 628523 628936 forward b0597 gacctcgccagccatattaccctacaggatattgtggtcgatggcggctcaacgctgggggCataagcatgatctggaaac weak Subset III nadA -26 781282 1 forward b0750_781282 Upstream Sense Gene 781308 782351 forward b0750 tagcatataaaacaaattacaccgataacagcgaatattacgctaatgtcggttttaacgtTaagcctgtaaaacgagatg weak Subset III ybhC -42 806546 1 reverse b0772_806546 Upstream Sense Gene 805221 806504 reverse b0772 aaaacaactttttgtctttttaccttcccgtttcgctcaagttagtataaaaaagcaggcTtcaacggattcatttttcta weak Subset III iaaA -31 865760 1 forward b0828_865760 Upstream Sense Gene 865791 866756 forward b0828 atctttctatattcaaaaattgaatgagtaattcataaaaattctgatatttatagcaaaaGtggcgaaccacccttaatg weak Subset III ybjX 18 918289 1 reverse b0877_918289 Upstream Sense Gene 917351 918307 reverse b0877 tacgcaatggtgaaatcgacgccatgtataaccattgatttcatgaatatgtcgcagctaActgaacggacctttacgcca weak Subset III ompF -110 986315 1 reverse b0929_986315 Upstream Sense Gene 985117 986205 reverse b0929 ctttatctttgtagcactttcacggtagcgaaacgttagtttgaatggaaagatgcctgcAgacacataaagacaccaaac weak Subset III pepN -31 989814 1 forward b0932_989814 Upstream Sense Gene 989845 992457 forward b0932 tacctgaaaagatgaagattctgcatagcgcgatttacgcaacaggaatagactgaacaccAgactctataaaagatgcta weak Subset III putP -17 1078511 1 forward b1015_1078511 Upstream Sense Gene 1078528 1080036 forward b1015 actctgttaccccgttccggtggcagatataacggcaagtttcgacattgccgataataatTttttggagactttagatgg weak Subset III solA -23 1119832 1 reverse b1059_1119832 Upstream Sense Gene 1118691 1119809 reverse b1059 caccggtgcctttaccatttctgggttgtatatctgcattcagttaattactctgcttaaAccatgagagcagagagaaaa weak Subset III rne 44 1143546 1 reverse b1084_1143546 Upstream Sense Gene 1140405 1143590 reverse b1084 taatgagtaagttacgatgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgCgttgcccttgtagatgggca weak Subset III ptsG -102 1156990 1 forward b1101_1156990 Upstream Sense Gene 1157092 1158525 forward b1101 tgaagttgaaacgtgatagccgtcaaacaaattggcactgaattattttactctgtgtaatAaataaagggcgcttagatg weak Subset III pepT -21 1185046 1 forward b1127_1185046 Upstream Sense Gene 1185067 1186293 forward b1127 gcaggggtaaaagtgacctgacgcaatatttgtcttttcttgcttcttaataatgttgtcaCaaaaagtgagggtgactac weak Subset III fadR -26 1234135 1 forward b1187_1234135 Upstream Sense Gene 1234161 1234880 forward b1187 tttcttctttttgtctgctatcagcgtagttagccctctggtatgatgagtccaactttgtTttgctgtgttatggaaatc weak Subset III yciI -27 1308916 1 reverse b1251_1308916 Upstream Sense Gene 1308593 1308889 reverse b1251 cttaacaaagacatcatctttccgttgcagatcttcgccctttcaaataacgtactttacAactttcccgaacaaggagtt weak Subset III acnA -5 1333850 1 forward b1276_1333850 Upstream Sense Gene 1333855 1336530 forward b1276 tgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggAgctatgtcgtcaaccctac weak Subset III fabI 161 1348902 1 reverse b1288_1348902 Intra Sense Gene 1348275 1349063 reverse b1288 actggcattcacctaccagaacgacaaactgaaaggccgcgtagaagaatttgccgctcaAttgggttctgacatcgttct weak Subset III ycjG -56 1386898 1 forward b1325_1386898 Upstream Sense Gene 1386954 1387919 forward b1325 ttatctttcctgtttacatatagttaacgtcacacctagtttatgctaactgtcaataacaCagcaaacgctatttgcgct weak Subset III aldA -42 1486214 1 forward b1415_1486214 Upstream Sense Gene 1486256 1487695 forward b1415 cccttcacagaattgtcctttcacgattccgtctctctgatgattgatgttaattaacaatGtattcaccgaaaacaaaca weak Subset III trg -28 1490466 1 forward b1421_1490466 Upstream Sense Gene 1490494 1492134 forward b1421 gacgcaaagaggtttttggtcataagtaattaccgtcaagtgccgatgactttctatcaggAgtaaacctggacgagagac weak Subset III yncE -83 1521248 1 forward b1452_1521248 Upstream Sense Gene 1521331 1522392 forward b1452 attgtagtcgtaacggcaagaaatgctccacatttgagaaaataatgattaccattcccatTtataacaagagcgtaacga weak Subset III hdhA -83 1696147 1 reverse b1619_1696147 Upstream Sense Gene 1695297 1696064 reverse b1619 ttattcccgcccggctcattgcagcgaaataatcctctctttatctgctatacctggtagTgtcctttcctcaaggttaat weak Subset III gst -59 1712342 1 forward b1635_1712342 Upstream Sense Gene 1712401 1713006 forward b1635 cagccgtagcgtaaaattcagggaaactcttttacaagccgctaacttttcgttagcggctTtttttttgttcagcaacgc weak Subset III pykF -38 1753684 1 forward b1676_1753684 Upstream Sense Gene 1753722 1755134 forward b1676 gaggcaccaccactttcgtaataccggattcgctttccggcagtgcgcccagaaagcaagtTtctcccatccttctcaact weak Subset III lpp -38 1755407 1 forward b1677_1755407 Upstream Sense Gene 1755445 1755681 forward b1677 aagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgtaacgCtacatggagattaactcaa weak Subset III ydiP -32 1777357 1 reverse b1696_1777357 Upstream Sense Gene 1776414 1777325 reverse b1696 ctctcgctaaacgcggttgtataaccgcaatacacgccgtattttatccggcatatattgTttttgcttgctcatggaata weak Subset III ynjE -27 1837464 1 forward b1757_1837464 Upstream Sense Gene 1837491 1838798 forward b1757 aattacaacaaactgcgataacgcaaagtttttctcaatgcgtcagttcagaatggcgcacTcaaaactacaatgtcggga weak Subset III yeaG -143 1864789 1 forward b1783_1864789 Upstream Sense Gene 1864932 1866866 forward b1783 ccgtgcaggcaagttttccatttgccatctacgcttaattttgaaggtgtatcaccgggcaCgttgttctcatcgtcgata weak Subset III dcyD -28 1997532 1 reverse b1919_1997532 Upstream Sense Gene 1996518 1997504 reverse b1919 aaagggcgctttcactagcgccttttttatttacgcgttttcagcgtgcataataagaaaAtcacaacaacacacatcgga weak Subset III flu -36 2069527 1 forward b2000_2069527 Upstream Sense Gene 2069563 2072682 forward b2000 cacagccggacctccggcactgtaaccctttacctgccggtatccacgtttgtgggtaccgGcttttttattcaccctcaa weak Subset III yeeE -27 2083576 1 reverse b2013_2083576 Upstream Sense Gene 2082491 2083549 reverse b2013 gttctaatttagagaatttggttattggtctgcattccaccagtcatgaataatttcctcAttaacattcatctggttaat weak Subset III yegH 26 2135952 1 forward b2063_2135952 Upstream Sense Gene 2135926 2137509 forward b2063 atttgtcatacaacgaataggttttgtacttactatggaatggattgccgatccgtctatcTgggccgggttaatcacgct weak Subset III gatZ -111 2174454 1 reverse b2095_2174454 Upstream Sense Gene 2173081 2174343 reverse b2095 ccttctcgcaggcgttaaaaaattacctgaccgagcaccctgaagcgaccgatccccgggAttatttgcagtcggctaaat weak Subset III gatY -34 2175260 1 reverse b2096_2175260 Upstream Sense Gene 2174372 2175226 reverse b2096 ttcatattgtcgtttttgtgatcgttatctcgatatttaaaaacaaataatttcattataTtttgaaatcgaaaacaaacg weak Subset III yegT -40 2176803 1 forward b2098_2176803 Upstream Sense Gene 2176843 2178120 forward b2098 ttagcgcggtcaagttttcaccgcaaaggtatttaaaaggtattattaagtggtattgtcaTcgcgtaccttacattacct weak Subset III thiM -151 2183474 1 reverse b2104_2183474 Upstream Sense Gene 2182535 2183323 reverse b2104 gattgtaaaactgccgtttttcctcgtttacaacgcgtgcgctggacattaccatcctccTctgcgatttatcatcgcaac weak Subset III yeiT -47 2232008 1 forward b2146_2232008 Upstream Sense Gene 2232055 2233293 forward b2146 tgaatcttttcacagtttaaattcccccgcacgcttagccttaatatcagtacattattatTtactaaacgctcgccttaa weak Subset III spr -59 2267942 1 forward b2175_2267942 Upstream Sense Gene 2268001 2268567 forward b2175 agtccacagatttggccttaaggaattgtttcaacatgcccaggtaattagtctcgtgtcgCttggcatttttttataacg weak Subset III ompC -62 2310833 1 reverse b2215_2310833 Upstream Sense Gene 2309668 2310771 reverse b2215 tattcgtgttggattattctgcatttttggggagaatggacttgccgactgattaatgagGgttaatcagtatgcagtggc weak Subset III glk -21 2507469 1 reverse b2388_2507469 Upstream Sense Gene 2506483 2507448 reverse b2388 cctttccggcgttgttgttatgcccccaggtatttacagtgtgagaaagaattattttgaCtttagcggagcagttgaaga weak Subset III ligA -25 2528223 1 reverse b2411_2528223 Upstream Sense Gene 2526183 2528198 reverse b2411 gacgccaacgcctgatacacttaaggcaaattaactcctcttcgaacccccgcttgtcggGggtttttagcattgatggtg weak Subset III talA -61 2576627 1 forward b2464_2576627 Upstream Sense Gene 2576688 2577638 forward b2464 cctgcttaatccagcaataccatgcctgtctgctatgcttttttgatgcgtttagcgaaatTtctcagaagtgtgaattaa weak Subset III sseA -107 2650409 1 forward b2521_2650409 Upstream Sense Gene 2650516 2651361 forward b2521 taattattatgcgtgagaatttacgttatgtaattcagtatcacgcccatacaatccgaatTttagtgagaattgtggctc weak Subset III trmJ 53 2661292 1 reverse b2532_2661292 Upstream Sense Gene 2660605 2661345 reverse b2532 aaagacaatgctgcaaaatattcgaattgtgctggtggagacgtcacacaccggcaatatGggttctgttgcccgtgccat weak Subset III ygaZ 72 2807711 1 forward b2682_2807711 Upstream Sense Gene 2807639 2808376 forward b2682 actccacagcctgctcctggttcggcgaccttcatggaaggatgcaaagacagtttaccgaTtgttattagttatattccg weak Subset III rpoS -16 2865589 1 reverse b2741_2865589 Upstream Sense Gene 2864581 2865573 reverse b2741 tgccgcagcgataaatcggcggaaccaggcttttgcttgaatgttccgtcaagggatcacGggtaggagccaccttatgag weak Subset III rlmD -44 2913066 1 reverse b2785_2913066 Upstream Sense Gene 2911721 2913022 reverse b2785 tgccaggatcagaatcatcatgcgtgcgcgcaggctgtagttggtcatggagttccgttaTgggacaattaaggtcacact weak Subset III tktA 92 3079565 1 reverse b2935_3079565 Upstream Sense Gene 3077666 3079657 reverse b2935 tcgtgcgctgagcatggacgcagtacagaaagccaaatccggtcacccgggtgcccctatGggtatggctgacattgccga weak Subset III yhbT -25 3299323 1 reverse b3157_3299323 Upstream Sense Gene 3298774 3299298 reverse b3157 tcatatggaattgttgatttataccgctatgttatttttctgatatggcaaaataggatgAttgttgaaacagggagtaaa weak Subset III degQ 46 3378811 1 forward b3234_3378811 Upstream Sense Gene 3378765 3380132 forward b3234 cgagagcaggaataatgaaaaaacaaacccagctgttgagtgcattagcgttaagtgtcggGttaactctctcggcgtcat weak Subset III rpsM -24 3440517 1 reverse b3298_3440517 Upstream Sense Gene 3440137 3440493 reverse b3298 tgtatgtctgtgcgtttccatttgagtatcctgaaaacgggcttttcagcatggaacgtaCatattaaatagtaggagtgc weak Subset III gspA 65 3453355 1 reverse b3323_3453355 Upstream Sense Gene 3451951 3453420 reverse b3323 tacgagaagagaagttattctttcctggttgtgtgagaaacgtcaaacctggcgtctatgCtatttgttgggtgaggctgg weak Subset III yhiR -35 3643373 1 forward b3499_3643373 Upstream Sense Gene 3643408 3644250 forward b3499 ttcgcggcggcggcctcttttcggtatactgtcctgatacgcttttgtgcgccccgaatacGggccgatttttacttaccg weak Subset III gpmM -29 3783254 1 forward b3612_3783254 Upstream Sense Gene 3783283 3784827 forward b3612 tcgtatattttgatcttcagaggctattttatcgattcagctgtagtaaaattacgcaaatTttgactcttgagtatgagg weak Subset III yicH -28 3828452 1 forward b3655_3828452 Upstream Sense Gene 3828480 3830189 forward b3655 agtctcacctctttaaccattcccgccttgaggattgcgcgtaaatcgtgcataactccctTatgtgcatttcacgggatg weak Subset III kup -57 3929282 1 forward b3747_3929282 Upstream Sense Gene 3929339 3931207 forward b3747 caggttaatgtggccgcatttaggagtacgattttgccgttaatcgtgcatactgtgcgctTttttgtgggccaagggact weak Subset III dapF 117 3992902 1 forward b3809_3992902 Intra Sense Gene 3992785 3993609 forward b3809 acgcagaatgtctttttttcaccggagctgattcgtcgcctggctgatcggcacctgggggTagggtttgaccaactgctg weak Subset III mobA 43 4039979 1 reverse b3857_4039979 Upstream Sense Gene 4039438 4040022 reverse b3857 taaaagaggcgatatcggtgaatctgatgacgacgataacaggcgttgtgctggcaggcgGtaaagccagacgaatgggcg weak Subset III yihX -5 4073571 1 forward b3885_4073571 Upstream Sense Gene 4073576 4074175 forward b3885 gccacatagccaaacccatcctttcccgctacagttaatttcttgtggcgcgaaaggaggcAaaaatgctctatatctttg weak Subset III fdoG 131 4083714 1 reverse b3894_4083714 Intra Sense Gene 4080795 4083845 reverse b3894 gggttttgcacccagcgtagcactcgcggaaacccggcagtataaactgctgcgcacccgCgaaacccgtaatacctgcac weak Subset III pfkA -33 4105542 1 forward b3916_4105542 Upstream Sense Gene 4105575 4106537 forward b3916 ttatactatttgcacattcgttggatcacttcgatgtgcaagaagacttccggcaacagatTtcattttgcattccaaagt weak Subset III zapB -89 4116449 1 forward b3928_4116449 Upstream Sense Gene 4116538 4116783 forward b3928 aaccgtaatctgcaaggcgtgccgctggacagcgatggcgcggcttcatacaatcggagctAactaaagtgcgctcgtatt weak Subset III menA -7 4118379 1 reverse b3930_4118379 Upstream Sense Gene 4117446 4118372 reverse b3930 atcgcgttcaatcattttcatcattgtttgatggggctgaaaggccccatttttattggcGcgtattatgactgaacaaca weak Subset III fabR -45 4159045 1 forward b3963_4159045 Upstream Sense Gene 4159090 4159794 forward b3963 gtttaagcggcaggtttccgctgtacgtaaaagaaccggccaaagaattgcagtaaatatgTtttattgcgttaccgttca weak Subset III malE -45 4244487 1 reverse b4034_4244487 Upstream Sense Gene 4243252 4244442 reverse b4034 cggtggggcgtaggggcaaggaggatggaaagaggttgccgtataaagaaactagagtccGtttaggtgttttcacgagca weak Subset III yjbQ -24 4268237 1 forward b4056_4268237 Upstream Sense Gene 4268261 4268677 forward b4056 cgaatgctgtttttttaatcacacctttatcctttcgctgtcttgctgcaaactgattaagAgagttttatcaaggagcag weak Subset III yjdC -23 4361354 1 reverse b4135_4361354 Upstream Sense Gene 4360756 4361331 reverse b4135 tggatgctgaaaccttcagcgcacatttgcgcgatcgccaaccgtgaacgacacttgcagTgggaaagacggaggaaaata weak Subset III groL -49 4368999 1 forward b4143_4368999 Upstream Sense Gene 4369048 4370694 forward b4143 aagatcgacaatgaagaagtgttgatcatgtccgaaagcgacattctggcaattgttgaagCgtaatccgcgcacgacact weak Subset III blc -25 4375770 1 reverse b4149_4375770 Upstream Sense Gene 4375212 4375745 reverse b4149 tccatcgggtccgaattttcggaccttttctccgcttttccttgctgtcatctacacttaGaaaaaaaccagtaaggaaac weak Subset III rpsF -93 4423048 1 forward b4200_4423048 Upstream Sense Gene 4423141 4423536 forward b4200 aggggagatttatttcggctctgcccttgagtttagcgaggcatacaagtactataacgcgTcatttttcagccgaccttt weak Subset III ytfB -102 4426842 1 reverse b4206_4426842 Upstream Sense Gene 4426102 4426740 reverse b4206 tgggtaaaactttgtcgcgggaatgatgacaaatcccagggaaaaagaaacaatagcaatAtcccgtatgaatataataaa weak Subset III rraB -29 4476467 1 forward b4255_4476467 Upstream Sense Gene 4476496 4476912 forward b4255 taaagcataaatctttgtcacaaaggtggaggcaatgtcagtggtgtgtgacaataagagtAtcggcaggacattaagagg weak Subset III insC-3 17 2068232 1 reverse b1997_2068232 Upstream Sense Gene 2067839 2068249 reverse b1997 actggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactAgtttttagactagtcattgg weak Subset III hdeD 16 3655034 1 forward b3511_3655034 Upstream Sense Gene 3655018 3655590 forward b3511 attgatagcaggggattttcttcttaattttatagggtggttctatgttatatatagataaGgcaacaattttgaagtttg weak Subset III insA-5 -16 1977255 1 reverse b1894_1977255 Upstream Sense Gene 1976964 1977239 reverse b1894 agtatgacttatacatttatgggtgatgctgccaacttactgatttagtgtatgatggtgTttttgaggtgctccagtggc weak Subset III cdaR -17 182446 1 forward b0162_182446 Upstream Sense Gene 182463 183620 forward b0162 tcatcatcctttaggcatttgcacaatgccgtacgttacgtacttccttatgctaagccgtGcataacggaggacttatgg weak Subset III tqsA -23 1671914 1 forward b1601_1671914 Upstream Sense Gene 1671937 1672971 forward b1601 tacctgagcggtttgattttcgttatgatgacggagcgaaaaagacattattattagcaaaGgaagaaaaaacggggacaa weak Subset III iraP -24 400586 1 forward b0382_400586 Upstream Sense Gene 400610 400870 forward b0382 gtcataaaaataatacttccagacactatgaagttgtgaaacataatgttaacttctccatActttggataaggaaataca weak Subset III poxA -25 4380641 1 forward b4155_4380641 Upstream Sense Gene 4380666 4381643 forward b4155 cgctgtttgattcctgcgtaaaatttgtctcgccgtcgcgttgcgagtagacttcgtgcccTtgtcaaaaactggagattt weak Subset III matP -26 1017682 1 forward b0956_1017682 Upstream Sense Gene 1017708 1018160 forward b0956 aaagctcacaggatggagattcttttcttcactggcctaaaaagctgatattctgtaaagaGttacacggtaacattgaga weak Subset III argO -28 3066858 1 reverse b2923_3066858 Upstream Sense Gene 3066195 3066830 reverse b2923 ctgattgccaattaatattatcaatttccgctaataacaatcccgcgatatagtctctgcAtcagatacttaattcggaat weak Subset III queF -30 2923340 1 forward b2794_2923340 Upstream Sense Gene 2923370 2924218 forward b2794 gcttgtgcggtcaaatcgtccactaatttctctcttcacttaaaccagatacacttgtcgtTtagtttatctggtttatga weak Subset III can -33 142703 1 reverse b0126_142703 Upstream Sense Gene 142008 142670 reverse b0126 ttacgttcttacactttatctgtggtttaaatcgtcccggagttgccctatattagccaaAcgtaattatttggttacagg weak Subset III tsgA -49 3490541 1 forward b3364_3490541 Upstream Sense Gene 3490590 3491771 forward b3364 tttagcaaccgattgcaataaaacatttaaacagatcacaaaatcacctaaaatcgcccgcTcgcggcatatcccgctatg weak Subset III gnsB -64 1635870 1 reverse b1550_1635870 Upstream Sense Gene 1635633 1635806 reverse b1550 tgtgtaaaatttagactatcgtatgttgattattgcgatgtttcatcttatcttttacacGtttgcaccatataatcgact weak Subset III bssS -67 1120245 1 reverse b1060_1120245 Upstream Sense Gene 1119924 1120178 reverse b1060 atttatctgtttccccctttaaaaattcggtgaatacccttacttattggtatactgaagTtgcttcagataaaaacgcat weak Subset III puuD -68 1359076 1 forward b1298_1359076 Upstream Sense Gene 1359144 1359908 forward b1298 atgtttgtcaaatgttaaattgagtttgcaaaaatgaaaacccactgctagattgaaaaaaTattgaacataaaggtcatt weak Subset III iraM -87 1211313 1 reverse b1160_1211313 Upstream Sense Gene 1210903 1211226 reverse b1160 agattccttgctttaaattttattttatataagccatcattttaattaatttatttttttGaggggggggtaatatactca weak Subset III mlaA -128 2463157 1 reverse b2346_2463157 Upstream Sense Gene 2462274 2463029 reverse b2346 ttctgtttctatagaatcaagtagcctacagggcggcgattaccaggctatgatcaaatcAgcaaatcagggcgtctggac weak