# Copies and Copyright-Notice # # RegulonDB is free for academic/noncommercial use # # User is not entitled to change or erase data sets of the RegulonDB # database or to eliminate copyright notices from RegulonDB. Furthermore, # User is not entitled to expand RegulonDB or to integrate RegulonDB partly # or as a whole into other databank systems, without prior written consent # from CCG-UNAM. # # Please check the license at http://regulondb.ccg.unam.mx/menu/download/full_version/terms_and_conditions.jsp # # Citation # # Tierrafría, V. H. et al. (2022). RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12, # Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000833. PMID: 35584008. https://doi.org/10.1099/mgen.0.000833 # # # Contact # # Person: RegulonDB Team # Web Page: http://regulondb.ccg.unam.mx/menu/about_regulondb/contact_us/index.jsp # (regulondb@ccg.unam.mx) # # # Release: 11.2 Date: 05/22/2023 # Genome version: U00096.3, Refseq version: NC_000913.3; GI:556503834 # ___________________________________________________________________________ # Created: 06/12/2023 13:38:07 # Columns: # (1) Identifier assigned by RegulonDB to the gene related to the Ribosome binding site (RBS) # (2) Gene related to the RBS # (3) RBS left end position in the genome # (4) RBS right end position in the genome # (5) DNA strand where the rbs is located # (6) Center position of RBS, relative to the gene start # (7) RBS sequence # (8) Evidence that supports the existence of the RBS # (9) Evidence confidence level (Confirmed, Strong, Weak) ECK120000026 ada 2310410 2310415 reverse -7 ccttaaccagGGAGCTgatTAT ECK120002270 aegA 2585531 2585536 reverse -8 caaccaaaaaAGAAGGtcgtTAT ECK120001089 aes 499980 499985 reverse -9 gtaatttgaaAGGAGTttttgTAT ECK120001351 ahpC 638931 638936 forward -11 tcgaaaacacGGAGGAagtatagATG ECK120002173 aldB 3756518 3756523 reverse -9 ctcacaccgcAAGGAGacgatCAT ECK120001753 amtB 472954 472959 forward -9 acacagcaacAGGAACgaaaaATG ECK120000043 apaG 51615 51620 reverse -11 cgcgcctttgCAGGAGagttaacGAT ECK120000052 araE 2982186 2982191 reverse -6 tctctgctggCAGGAAaaAAT ECK120000084 asd 3574889 3574894 reverse -13 cacatctttgCAGGAAaaaaacgctTAT ECK120004333 blc 4377729 4377734 reverse -9 aaaaaccagtAAGGAAacattTAT ECK120003524 cedA 1813670 1813675 reverse -9 tatgcgtttaGTGAAGccagtAAT ECK120001215 chiA 3469859 3469864 reverse -8 tttacgtcacAAGGGAttatAAT ECK120000153 clpB 2734178 2734183 reverse -7 gatccgttatGGGAGGagtTAT ECK120002868 copA 511386 511391 reverse -9 aactgtcttaAAGGAGtgtttTAT ECK120001425 corA 4001413 4001418 forward -10 ttaagcattgGGAGTCccggtcATG ECK120000156 cpdB 4436574 4436579 reverse -11 cccgatgataAAAGGAtgtccctGAT ECK120004317 cpxP 4105811 4105816 forward -6 agattttgggAGCAAAtgATG ECK120001196 creA 4635510 4635515 forward -8 tagataaaaaTGGTAAcaatATG ECK120001197 creB 4635996 4636001 forward -8 ggcaataacaGAGGCGatttATG ECK120000721 creC 4636682 4636687 forward -11 ggatatagccTGAGGGgcctgtaATG ECK120000141 creD 4638166 4638171 forward -9 gccattgcaaAGGAGAagactATG ECK120003901 csiE 2665422 2665427 forward -10 tatgcttatgGGAGATctacagATG ECK120000163 cstA 629881 629886 forward -10 gacacgcacaCGGATAacaactATG ECK120002070 cutA 4365361 4365366 reverse -7 tctgttcttgCGAGGTgttTAT ECK120003611 cutC 1958966 1958971 reverse -298 aggagtaaaaATGGCAttactggaaatttgctgttacagcatggaatgtgcactaacggcgcagcaaaacggcgcagacagagttgaattatgcgcagccccaaaagaggggggcttaacgccgtcgttgggtgtactgaaatccgtgcgccagcgggtgacgatccctgtgcatccgataattcgcccacgcggtggtgatttttgctacagcgacggtgagtttgccgccattcttgaggatgtgcgcacggtccgcgaattaggttttcctggactggtgacgggcgttctcgatgttgacGGG ECK120001385 cynR 358696 358701 reverse -8 ggatttacttATAGGTtgcgAAT ECK120000181 cysD 2876335 2876340 reverse -8 cggtattgcaAAGGAAcggtTAT ECK120000039 cysQ 4436743 4436748 forward -9 tcacagagacGAGGTGgagaaATG ECK120000210 dedA 2434746 2434751 reverse -7 agtacaaggcATAGGCaaaTAT ECK120001585 eamA 1621142 1621147 reverse -7 tgaaattcagAGGCGGtagAAT ECK120001307 endA 3090336 3090341 forward -8 gttttaacacGGAGTAagtgATG ECK120000265 exbB 3151991 3151996 reverse -9 acttgcgtccTGGAGAtacacAGT ECK120000266 exbD 3151252 3151257 reverse -11 aaattacgcgCAGGATaatatccGAT ECK120001484 fadD 1889752 1889757 reverse -8 acgcattttaGAGGTGaagaATT ECK120002681 fadH 3231653 3231658 forward -9 ttttacatacTGGACAattttATG ECK120000280 fecA 4516681 4516686 reverse -6 aaatgatgatGGGGAAggTAT ECK120000286 fecR 4517725 4517730 reverse -10 ctgttccgtcTGGAGTatgggtTAT ECK120000295 fhlA 2854327 2854332 forward -8 tgctttcctgGAAGAAcaaaATG ECK120000303 fimB 4540943 4540948 forward -11 tctgtaattaTAAGGGaaaaacgATG ECK120001324 fliA 2001798 2001803 reverse -11 tcatataacgCAGGGCtgtttatCGT ECK120000832 fliD 2003860 2003865 forward -9 cgaaagataaAAGGAAatcgcATG ECK120001355 fliS 2005291 2005296 forward -9 atattcatcgGGAGACaggtcATG ECK120001356 fliT 2005699 2005704 forward -11 tctttgattcAGGACCcagtctgATG ECK120000223 flk 2437938 2437943 forward -9 tttcaggtatAAGGATacgtaATG ECK120000350 fumB 4347335 4347340 reverse -11 atacagagttACAGGCtggaagcTAT ECK120000358 galS 2241674 2241679 reverse -8 atctcataacAGGTAGtgaaTAT ECK120000362 gcd 141233 141238 reverse -10 atgaattgaaATGGTGtctcttTAT ECK120001729 gcvA 2942577 2942582 reverse -12 catttaacatCAAAGTttaatagcCAT ECK120002441 glcB 3123814 3123819 reverse -11 taagcgaaaaCGAGGAgataaacAAT ECK120004106 glcC 3128260 3128265 forward -9 acctgtgcacGAGGTCcgggaATG ECK120004105 glcD 3128028 3128033 reverse -9 cacaacaaagCGAAGCctactCAT ECK120004104 glcE 3126530 3126535 reverse -10 ttccctgaacTGGAGCgtttctGAT ECK120002572 glcF 3125466 3125471 reverse -9 gcggaactttGAGGAGcaggcTAT ECK120004103 glcG 3124238 3124243 reverse -9 gcccttgaaaAGGAATaacaaAAT ECK120001349 glgS 3191946 3191951 reverse -9 gcgataaccgGAGGATgtgctTAT ECK120001550 glnE 3199652 3199657 reverse -13 ttaatcaggcAAGGATaaaatcgctTAT ECK120002080 glnK 472586 472591 forward -9 aattctgaccGGAGGGgatctATG ECK120000387 glpD 3562001 3562006 forward -9 acgaaagtgaATGAGGgcagcATG ECK120000388 glpE 3561829 3561834 reverse -8 tttgtaaagaAAGAGAgacgCAT ECK120000389 glpF 4118097 4118102 reverse -9 attaactcttCAGGATccgatTAT ECK120000391 glpK 4117230 4117235 reverse -10 atatgactacGGGACAattaaaCAT ECK120000393 glpR 3560613 3560618 reverse -10 aaaataattcCAGGGAtttataAAT ECK120002869 glsA 511625 511630 forward -13 atctataaaaAGGAGTtaacaaaagATG ECK120000401 glyA 2685514 2685519 reverse -9 ttagctgagtCAGGAGatgcgGAT ECK120002341 gntK 3577600 3577605 reverse -10 tcttgtattgTGGGGGcaccacTTT ECK120002323 gntP 4551304 4551309 reverse -10 tcaaccaggtAAGGTAaaacgtTAT ECK120002342 gntR 3578728 3578733 reverse -4 tttgtaccttCAGGACGAT ECK120002247 gntT 3546545 3546550 forward -11 acaaatgaaaGGCCAGgtaaatcATG ECK120002343 gntU 3577068 3577073 reverse -9 tattaaaaaaGGCAAAtaagtAGT ECK120001364 hdeA 3656747 3656752 reverse -9 ctttatagttGAGGATattacGAT ECK120001624 hpf 3346161 3346166 forward -9 ccaaccgataAGGAAGacactATG ECK120002443 hpt 141420 141425 forward -8 taaatcatatGGTTAGagatATG ECK120002032 hscA 2658942 2658947 reverse -9 ttttaatttcTGGAAGctaaaCAT ECK120000461 hyaA 1032121 1032126 forward -15 gtgtcgcaagGAGGAGagacgtgcgatATG ECK120000462 hyaB 1033239 1033244 forward -12 gccaggcaatGAGGATaaacaggcATG ECK120000463 hyaC 1035053 1035058 forward -10 ttaacagcgaAGGAGAatcatcATG ECK120000464 hyaD 1035759 1035764 forward -8 ataagtaacaAGGAGCgttcATG ECK120000465 hyaE 1036342 1036347 forward -9 gatgacacagGAGGAGcagggATG ECK120000466 hyaF 1036735 1036740 forward -11 gaaccgcagcAGGAGCgtgcctcATG ECK120000476 hypA 2850637 2850642 forward -7 atagttaatgGGAGGCgatATG ECK120000477 hypB 2850989 2850994 forward -9 gaaatagaccAGGAGTgagcgATG ECK120000478 hypC 2851851 2851856 forward -10 tgaactggctGGAGACacagcgATG ECK120000479 hypD 2852124 2852129 forward -9 gttgtatggcGAGGAAaaataATG ECK120000480 hypE 2853283 2853288 forward -10 ccacggtagcGGCGGCcaggcgATG ECK120000484 iclR 4223633 4223638 reverse -7 tacagaaaaaAGAGACtgtCAT ECK120000488 ilvC 3957957 3957962 forward -10 cacaacatcaCGAGGAatcaccATG ECK120000496 ilvY 3957829 3957834 reverse -11 acgtcaacatCGAGGGctgtcccTGT ECK120001717 intA 2756147 2756152 forward -9 ctaaacgcagGGAGACtccccATG ECK120000501 ispA 441110 441115 reverse -11 cccttttacaCCGGACaatgagtAAT ECK120000504 katG 4133819 4133824 forward -13 taacactgtaGAGGGGagcacattgATG ECK120000511 kdsA 1268147 1268152 forward -15 cattttactcAAGATTaaggcgatcctATG ECK120000512 kdsB 970841 970846 forward -8 actgctgatgAGAGTAaatcATG ECK120000530 livG 3594217 3594222 reverse -13 aacggcgcagCGAAAGgagagcaggCAT ECK120000531 livH 3596412 3596417 reverse -11 gggcgggtttAGAAAGgttacctTAT ECK120000533 livK 3597570 3597575 reverse -12 acatcacgaaTGGGGAtttttgacTAT ECK120000534 livM 3595491 3595496 reverse -13 ctgggtcgccCGGAGGtagagaaagTAT ECK120001889 lldD 3779814 3779819 forward -10 agcattcgagGGAGAAaaacgcATG ECK120001887 lldP 3777386 3777391 forward -10 cgtggactccAGGAGAcctgcaATG ECK120001888 lldR 3779039 3779044 forward -12 tgtcttaacgTGGATGattccttaATG ECK120002026 lrhA 2406650 2406655 reverse -11 tgagccgccaGTAAGTgataataTAT ECK120000544 lysR 2979009 2979014 forward -9 ccggattgcgAGAGAGcgctaATG ECK120000546 lysU 4354724 4354729 reverse -9 agctggatttAGAGGAaccaaAAT ECK120000556 malX 1699342 1699347 forward -10 gttctctacgAGGAGTcgttttATG ECK120000557 malY 1700945 1700950 forward -9 gtccaggcatAAGGATaagatATG ECK120000558 malZ 422504 422509 forward -11 attttcatcaCAGGGGaattatgATG ECK120001399 marR 1619107 1619112 forward -10 attacttgccAGGGCAactaatGTG ECK120000574 metA 4214265 4214270 forward -12 cgtatgtagtGAGGTAatcaggttATG ECK120000575 metB 4128657 4128662 forward -12 acaaagcccaGGGAACttcatcacATG ECK120000576 metC 3152223 3152228 forward -10 gtataaaaacAGGAATcccgacATG ECK120000578 metF 4132605 4132610 forward -8 agcgattgatGAGGTAaggtATG ECK120000581 metJ 4128401 4128406 reverse -8 acgaagaggaTTAAGTatctCAT ECK120000582 metK 3086692 3086697 forward -11 attctctttaGGTGATattaaatATG ECK120000583 metL 4129823 4129828 forward -9 ggctgcaaacAAGGGGtaaaaATG ECK120000586 mglB 2240353 2240358 reverse -7 taagaaaaacCGGAGAtacCAT ECK120001761 mobA 4042008 4042013 reverse -11 cccacaataaAAGAGGcgatatcGGT ECK120002294 mpl 4455771 4455776 forward -11 agattaaaaaAGGATAgtgacgtATG ECK120000610 mtr 3305824 3305829 reverse -9 ttttcactggAGAGAAgccctCAT ECK120000636 narL 1275836 1275841 reverse -9 acagacgtccAAGGAGataccCAT ECK120000639 narX 1277626 1277631 reverse -10 aaagcctgaaGGAAGAggtttaCAT ECK120000644 nfo 2250827 2250832 forward -10 cgggtttaacAGGAGTcctcgcATG ECK120002015 nlpD 2868758 2868763 reverse -7 caatttttccTGGGGGataAAT ECK120002047 npr 3347955 3347960 forward -8 acgctggaaaAACGTAaaccATG ECK120000653 nrdA 2344849 2344854 forward -13 aattccaaaaACAGGTacgacatacATG ECK120001988 nuoA 2405078 2405083 reverse -8 gctacttttgATGAGTaagcAAT ECK120001931 osmF 2219488 2219493 reverse -9 gtaaaagaatGAGGAAagcatCAT ECK120001358 osmY 4611383 4611388 forward -10 gcaaacatacAGGAATaaatcgATG ECK120002648 pdxB 2437860 2437865 reverse -11 tcgtctcataCAGGTAacacaaaCGT ECK120000693 pflB 953560 953565 reverse -8 acttaagaagGTAGGTgttaCAT ECK120000720 phoE 260106 260111 reverse -8 taattaaaatCAGGAAtgaaAAT ECK120001673 phoH 1084980 1084985 forward -9 cagtcactatGGAGATcgcggATG ECK120000722 phoP 1190455 1190460 reverse -10 aattaagacaGGGAGAaataaaAAT ECK120000727 phr 739494 739499 forward -10 acttgcgccaTTCAGGagttttATG ECK120002159 plaR 3742541 3742546 reverse -11 gcgctaccatCAGGACgcgacaaAAT ECK120000735 pntA 1677909 1677914 reverse -8 aaaccgatggAAGGGAatatCAT ECK120000736 pntB 1676367 1676372 reverse -9 cgcaaaaattAAGGGGtaacaTAT ECK120000737 polA 4046955 4046960 forward -8 gataaacaggCACGGAcattATG ECK120000762 proV 2804796 2804801 forward -16 tagacaaataAAGGAAtctttctattgcATG ECK120000763 proW 2805998 2806003 forward -9 tagatcgtgaGGGGGTaaataATG ECK120000764 proX 2807120 2807125 forward -9 ctgccaaaaaAAGGAAtaacaATG ECK120000725 pstS 3911531 3911536 reverse -8 tgaatcctccCAGGAGacatTAT ECK120001625 ptsN 3346566 3346571 forward -9 ggcaggttctTAGGTGaaattATG ECK120000784 purE 553112 553117 reverse -14 ttgtgcaccaCAGGAGttttaagacgCAT ECK120000787 purK 552599 552604 reverse -7 ccggacccgcGAGGTGcggCAT ECK120000789 purM 2621184 2621189 forward -10 gtaacgcgtgGGGACCcaagcaGTG ECK120000793 putP 1079292 1079297 forward -10 aataatttttTGGAGActttagATG ECK120002046 rapZ 3347101 3347106 forward -11 gacgttgtgaGGAGAAacagtacATG ECK120000829 rfaD 3793973 3793978 forward -11 tccataattcGAAGGTtacagttATG ECK120000833 rhaR 4098636 4098641 forward -7 tctggccgagGTAGCCacgGTG ECK120000834 rhaS 4097724 4097729 forward -9 tgacgacatcAGGAGGccagtATG ECK120001568 rnb 1348916 1348921 reverse -6 gccaccaaaaTAGACAatTAT ECK120000889 rpoN 3344697 3344702 forward -17 cgttttagcaGGAGAGtacgattctgaacATG ECK120000503 rpoS 2867559 2867564 reverse -10 ggatcacgggTAGGAGccacctTAT ECK120000516 rsmA 52435 52440 reverse -7 aaaatgattgTTAACAcccAAT ECK120004293 rtcB 3558086 3558091 reverse -9 acaacgaaaaGAGAAAaacaaAAT ECK120002224 rtcR 3558255 3558260 forward -10 gtcttttataAGGATAtctaagATG ECK120000919 sdaA 1896913 1896918 forward -16 gtccagtcacCTTGTCaggagtattatcGTG ECK120003471 slyA 1720834 1720839 reverse -12 gcaagctaatTATAAGgagatgaaATT ECK120000945 sohB 1329320 1329325 forward -9 gtttaaccaaGGTGGGgactcGTG ECK120000946 soxR 4277453 4277458 forward -13 aagttaacttGAGGTAaagcgatttATG ECK120000947 soxS 4277392 4277397 reverse -11 tgaacactgaAAAGAGgcagattTAT ECK120002029 treB 4466185 4466190 reverse -7 gtcatctgccATGGGGcttTAT ECK120002090 treR 4467250 4467255 reverse -6 cacgttacagGACAACagGAT ECK120000447 truA 2435648 2435653 reverse -14 gaaactggtgCAGGAGtatctgtactAAT ECK120001024 tsx 432022 432027 reverse -11 ggattttcaaACAGTGgcatacaTAT ECK120001029 tyrB 4267100 4267105 forward -11 ccgtaaacctGGAGAAccatcgcGTG ECK120001036 ugpB 3592334 3592339 reverse -11 tcggtacaacAAGAGAgataaacGAT ECK120001303 upp 2620880 2620885 reverse -10 ctgcccctcaAAGGAGaaagagTAT ECK120001048 usg 2436658 2436663 reverse -11 ttgctatttcTGGAGTaaaccacCAT ECK120001051 uvrB 813513 813518 forward -10 caactccttcAGGTAGcgactcATG ECK120004462 xapA 2524884 2524889 reverse -8 ccctacagaaAAAGGAtatgTAT ECK120002428 xapB 2523993 2523998 reverse -10 aatgatgcgaCAAGGAaacgatTAT ECK120001130 xapR 2522486 2522491 reverse -11 atttattataTGGAGCacttaatTAT ECK120001086 xseB 441356 441361 reverse -15 gaaaaatattGAGAGTcagacattcatTAT ECK120001094 ybgA 738990 738995 forward -8 taaaccgctcAGGAGCagtaATG ECK120001551 ygiF 3200971 3200976 reverse -8 cataaccgatAAGTAAaggcCAT ECK120004290 yhgH 3544761 3544766 forward -118 gcaacgccacACTTCGgcattcagtccccatccgtgcagcagcacaagatgaacattcccctgacctttggtctgccaccagatgttattcatccgctattgttctcttttgacttacaaggatgaacatATG ECK120002160 yiaK 3742719 3742724 forward -11 tcaaaaaaacAAGGAAgcctgggATG ECK120001766 yihI 4051334 4051339 forward -10 aacggctaaaAGACGAaccattATG ECK120001187 yjaB 4214129 4214134 reverse -8 gaatgactaaAAGGAGagaaAAT