# Copies and Copyright-Notice # # RegulonDB is free for academic/noncommercial use # # User is not entitled to change or erase data sets of the RegulonDB # database or to eliminate copyright notices from RegulonDB. Furthermore, # User is not entitled to expand RegulonDB or to integrate RegulonDB partly # or as a whole into other databank systems, without prior written consent # from CCG-UNAM. # # Please check the license at http://regulondb.ccg.unam.mx/menu/download/full_version/terms_and_conditions.jsp # # Citation # # Tierrafría, V. H. et al. (2022). RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12, # Microb Genom. 2022 May;8(5). doi: 10.1099/mgen.0.000833. PMID: 35584008. https://doi.org/10.1099/mgen.0.000833 # # # Contact # # Person: RegulonDB Team # Web Page: http://regulondb.ccg.unam.mx/menu/about_regulondb/contact_us/index.jsp # (regulondb@ccg.unam.mx) # # # Release: 11.2 Date: 05/22/2023 # Genome version: U00096.3, Refseq version: NC_000913.3; GI:556503834 # ___________________________________________________________________________ # # This file contains UnTranslated regions (UTR) of Transcription Units (TU) : # 5' UTR : From transcription start site to one nucleotide before start codon of the first gene of TU # 3' UTR : From one nucleotide after stop codon of the last gene of TU to last nucleotide of the terminator # # Created: 06/12/2023 13:39:06 # Columns: # (1) Operon Name # (2) Transcription Unit Name (TU) # (3) Promoter Name # (4) Transcription start site (+1) # (5) DNA strand of TU # (6) First Gene Name of TU [Gene Position left, Gene Position right] # (7) Last Gene Name of TU [Gene Position left, Gene Position right] # (8) Terminator Type [Terminator Position left, Terminator Position right] # (9) Coordinates of UTR [+1 OR Start of the first gene] to [End of the terminator OR End of the last gene]* # (10) Coordinates 5' UTR # (11) 5' UTR Sequence # (12) Coordinates 3' UTR # (13) 3' UTR Sequence # # * When the first one is NULL the other field is used # thrLABC thrLABC thrLp 148 forward thrL(190,255) thrC(3734,5020) rho-independent(5032,5086) 148-5086 148-190 ATAGCGCACAGACAGATAAAAATTACAGAGTACACAACATCCA 5020-5086 AAATCTATTCATTATCTCAATCAGGCCGGGTTTGCTTTTATGCAGCCCGGCTTTTTTATGAAGAAAT thrLABC thrL thrLp 148 forward thrL(190,255) thrL(190,255) rho-independent(274,310) 148-310 148-190 ATAGCGCACAGACAGATAAAAATTACAGAGTACACAACATCCA 255-310 ACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTT talB talB talBp 8191 forward talB(8238,9191) talB(8238,9191) rho-independent(9199,9226) 8191-9226 8191-8238 AGACCGGTTACATCCCCCTAACAAGCTGTTTAAAGAGAAATACTATCA 9191-9226 ATCATTCTTAGCGTGACCGGGAAGTCGGTCACGCTA mbiA htgA htgAp2 10643 forward mbiA(10830,11315) mbiA(10830,11315) 10643-11315 10643-10830 TCAGACCTGAGTGGCGCTAACCATCCGGCGCAGGCAGGCGATTTGCAGTACGGCTGGAATCGTCACGCGATAGGCGCTGCCGCTGACCGCTTTAACCCCATTTAGTGCCGCACCTACAGGGCCTCCCAGCCCCGCGCCGCGCAGCAAACCATGCCCAAGTACGCTCATTGCTGCGTGGGTGCGTAAAA mbiA htgA htgAp1 10644 forward mbiA(10830,11315) mbiA(10830,11315) 10644-11315 10644-10830 CAGACCTGAGTGGCGCTAACCATCCGGCGCAGGCAGGCGATTTGCAGTACGGCTGGAATCGTCACGCGATAGGCGCTGCCGCTGACCGCTTTAACCCCATTTAGTGCCGCACCTACAGGGCCTCCCAGCCCCGCGCCGCGCAGCAAACCATGCCCAAGTACGCTCATTGCTGCGTGGGTGCGTAAAA dnaK-tpke11-dnaJ dnaKJ dnaKp1 12048 forward dnaK(12163,14079) dnaJ(14168,15298) 12048-15298 12048-12163 AACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGATGACCGAATATATAGTGGAGACGTTTAGA dnaK-tpke11-dnaJ dnaKJ dnaKp2 12123 forward dnaK(12163,14079) dnaJ(14168,15298) 12123-15298 12123-12163 ACAACCACATGATGACCGAATATATAGTGGAGACGTTTAGA dnaK-tpke11-dnaJ dnaKJ dnaKp3 12144 forward dnaK(12163,14079) dnaJ(14168,15298) 12144-15298 12144-12163 ATATAGTGGAGACGTTTAGA sokC sokC sokCp 16952 forward sokC(16952,17010) sokC(16952,17010) 16952-17010 16952-16952 G nhaAR nhaAR nhaAp2 17317 forward nhaA(17489,18655) nhaR(18715,19620) 17317-19620 17317-17489 GGTCACTCGTGAGCGCTTACAGCCGTCAAAAACGCATCTCACCGCTGATGGCGCAAATTCTTCAATAGCTCGTAAAAAACGAATTATTCCTACACTATAATCTGATTTTAACGATGATTCGTGCGGGGTAAAATAGTAAAAACGATCTATTCACCTGAAAGAGAAATAAAAAG nhaAR nhaAR nhaAp1 17458 forward nhaA(17489,18655) nhaR(18715,19620) 17458-19620 17458-17489 ACGATCTATTCACCTGAAAGAGAAATAAAAAG rpsT rpsT rpsTp2 21120 reverse rpsT(20815,21078) rpsT(20815,21078) rho-independent(20771,20784) 20771-21120 21078-21120 GCCTTTGAATTGTCCATATAGAACACATTTGGGAGTTGGACCT 20771-20815 ATCGCCAATTTGCTGAAGCTTTGTGAAAAAGCCCGCGCAAGCGGG rpsT rpsT rpsTp1 21210 reverse rpsT(20815,21078) rpsT(20815,21078) rho-independent(20771,20784) 20771-21210 21078-21210 GCCATCACTACGTAACGAGTGCCGGCACATTAACGGCGCTTATTTGCACAAATCCATTGACAAAAGAAGGCTAAAAGGGCATATTCCTCGGCCTTTGAATTGTCCATATAGAACACATTTGGGAGTTGGACCT 20771-20815 ATCGCCAATTTGCTGAAGCTTTGTGAAAAAGCCCGCGCAAGCGGG ribF-ileS-lspA-fkpB-ispH ribF-ileS-lspA-fkpB-ispH ribFp 21383 forward ribF(21407,22348) ispH(26277,27227) rho-independent(27252,27279) 21383-27279 21383-21407 GATTTTCACTGTTTTGAGCCAGACA 27227-27279 AGTCATTAGCAGCCTAAGTTATGCGAAAATGCCGGTCTTGTTACCGGCATTTT ribF-ileS-lspA-fkpB-ispH ileS-lspA-fkpB-ispH ileSp1 21833 forward ileS(22391,25207) ispH(26277,27227) rho-independent(27252,27279) 21833-27279 21833-22391 GCTGGCATGGAATACGGCTTCGATATCACCAGTACGCAAACTTTTTGCGAAGGTGGCGTGCGCATCAGCAGCACCGCCGTGCGTCAGGCCCTTGCGGATGACAATCTGGCTCTGGCAGAGAGTTTACTGGGGCACCCGTTTGCCATCTCCGGGCGTGTAGTCCACGGTGATGAATTAGGGCGCACTATAGGTTTCCCGACGGCGAATGTACCGCTGCGCCGTCAGGTTTCCCCGGTGAAAGGGGTTTATGCGGTAGAAGTGCTGGGCCTCGGTGAAAAGCCGTTACCCGGCGTGGCAAACATCGGAACACGCCCAACGGTTGCCGGTATTCGCCAGCAGCTGGAAGTGCATTTGTTAGATGTTGCAATGGACCTTTACGGTCGCCATATACAAGTAGTGCTGCGTAAAAAAATACGCAATGAGCAGCGATTTGCGTCGCTGGACGAACTGAAAGCGCAGATTGCGCGTGATGAATTAACCGCCCGCGAATTTTTTGGGCTAACAAAACCGGCTTAAGCCTGTTATGTAATCAAACCGAAATACGGAACCGAGAATCTGA 27227-27279 AGTCATTAGCAGCCTAAGTTATGCGAAAATGCCGGTCTTGTTACCGGCATTTT ribF-ileS-lspA-fkpB-ispH ileS-lspA-fkpB-ispH ileSp2 22034 forward ileS(22391,25207) ispH(26277,27227) rho-independent(27252,27279) 22034-27279 22034-22391 GCGAATGTACCGCTGCGCCGTCAGGTTTCCCCGGTGAAAGGGGTTTATGCGGTAGAAGTGCTGGGCCTCGGTGAAAAGCCGTTACCCGGCGTGGCAAACATCGGAACACGCCCAACGGTTGCCGGTATTCGCCAGCAGCTGGAAGTGCATTTGTTAGATGTTGCAATGGACCTTTACGGTCGCCATATACAAGTAGTGCTGCGTAAAAAAATACGCAATGAGCAGCGATTTGCGTCGCTGGACGAACTGAAAGCGCAGATTGCGCGTGATGAATTAACCGCCCGCGAATTTTTTGGGCTAACAAAACCGGCTTAAGCCTGTTATGTAATCAAACCGAAATACGGAACCGAGAATCTGA 27227-27279 AGTCATTAGCAGCCTAAGTTATGCGAAAATGCCGGTCTTGTTACCGGCATTTT ribF-ileS-lspA-fkpB-ispH ileS-lspA-fkpB-ispH ileSp3 22229 forward ileS(22391,25207) ispH(26277,27227) rho-independent(27252,27279) 22229-27279 22229-22391 GTGCTGCGTAAAAAAATACGCAATGAGCAGCGATTTGCGTCGCTGGACGAACTGAAAGCGCAGATTGCGCGTGATGAATTAACCGCCCGCGAATTTTTTGGGCTAACAAAACCGGCTTAAGCCTGTTATGTAATCAAACCGAAATACGGAACCGAGAATCTGA 27227-27279 AGTCATTAGCAGCCTAAGTTATGCGAAAATGCCGGTCTTGTTACCGGCATTTT ribF-ileS-lspA-fkpB-ispH lsp-fkpB-ispH lspAp 25014 forward lspA(25207,25701) ispH(26277,27227) rho-independent(27252,27279) 25014-27279 25014-25207 ACGCACCTGCTGATGCTCAGCAGAGCGAAGTACTCAAAGGGCTGAAAGTCGCGTTGAGTAAAGCCGAAGGTGAGAAGTGCCCACGCTGCTGGCACTACACCCAGGATGTCGGCAAGGTGGCGGAACACGCAGAAATCTGCGGCCGCTGTGTCAGCAACGTCGCCGGTGACGGTGAAAAACGTAAGTTTGCCTGA 27227-27279 AGTCATTAGCAGCCTAAGTTATGCGAAAATGCCGGTCTTGTTACCGGCATTTT dapB dapB dapBp2 28288 forward dapB(28374,29195) dapB(28374,29195) rho-independent(29248,29272) 28288-29272 28288-28374 TAATTATCAGCGTTTTTGGCTGGCGGCGTAGCGATGCGCTGGTTACTCTGAAAACGGTCTATGCAAATTAACAAAAGAGAATAGCTA 29195-29272 ACCACAAAATATTTGTTATGGTGCAAAAATAACACATTTAATTTATTGATTATAAAGGGCTTTAATTTTTGGCCCTTT dapB dapB dapBp1 28343 forward dapB(28374,29195) dapB(28374,29195) rho-independent(29248,29272) 28343-29272 28343-28374 GGTCTATGCAAATTAACAAAAGAGAATAGCTA 29195-29272 ACCACAAAATATTTGTTATGGTGCAAAAATAACACATTTAATTTATTGATTATAAAGGGCTTTAATTTTTGGCCCTTT carAB carAB carAp1 29551 forward carA(29651,30799) carB(30817,34038) rho-independent(34087,34120) 29551-34120 29551-29651 GTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAATATTCTCTGGAGGGTGTTT 34038-34120 ATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTT carAB carAB carAp2 29619 forward carA(29651,30799) carB(30817,34038) rho-independent(34087,34120) 29619-34120 29619-29651 ATAAAGTGAGTGAATATTCTCTGGAGGGTGTTT 34038-34120 ATAGCGTGTCATGGCAGATATTTTTCATCCGCTAATTTGATCGAATAACTAATACGGTTCTCTGATGAGGACCGTTTTTTTTT carAB carB carBp 30775 forward carB(30817,34038) carB(30817,34038) 30775-34038 30775-30817 GCAGTACCGTAAAACCGCTAAGTAATCAGGAGTAAAAGAGCCA caiF caiF caiFp 34218 forward caiF(34300,34695) caiF(34300,34695) 34218-34695 34218-34300 ATCCACAATTTTAATATGGCCTTGTTTAATTGCTTCAAAACGAGTCATAGCCAGACTTTTAATTTGTGAAACTGGAGTTCGTA caiTABCDE caiTABCDE caiTp 42037 reverse caiT(40417,41931) caiE(34781,35371) 34781-42037 41931-42037 GCCATTAACGCGTCCACGAGGTTAATAATAATTATATTAAATGTTAACAAAAATAAAACAAACGGGAACGCAAAATAAATATTCGTTTTCACAGTGGAATTAACTCA fixABCX fixABCX fixAp 42325 forward fixA(42403,43173) fixX(45463,45750) 42325-45750 42325-42403 TCAAAATTAAAGGGCGTGATATCTGTAATTAACACCACCGATATGAACGACGTTTCCTTCATGATTTCTGGAGATGCAA yaaU yaaU yaaUp 45592 forward yaaU(45807,47138) yaaU(45807,47138) 45592-47138 45592-45807 CCCGCAGGTCTGTACAAGAAGCAGGATGACGGCAGTGTGCGCTTCGATTACGCCGGATGTCTGGAGTGCGGCACCTGTCGCATTCTGGGGCTGGGGTCGGCGCTGGAACAGTGGGAATACCCGCGCGGCACCTTTGGTGTGGAGTTCCGTTACGGCTGATGTTGGTTTGATACGTAACGCCGCACTGACTCTCATTGCAAAAAACAGGAATAACCA folA folA folAp 49799 forward folA(49823,50302) folA(49823,50302) 49799-50302 49799-49823 AATTTTTTTTATCGGGAAATCTCAA lptD-surA-pdxA-rsmA-apaGH apaGH apaGp 52034 reverse apaG(51229,51606) apaH(50380,51222) 50380-52034 51606-52034 ATTGCCGACATGCACTTTATGTTGCAAAAAGAGGTGGTGAATCGTCTGGTTGCAGGACCGAACAGCAAAGCGTATGGTCGATTAAGCGTCATGGCGCAATACTATTGCAATGTGATCCCGGTACTGGAAGTACCGCCGTCAGCCTTTACACCACCACCCAAAGTGGATTCCGCCGTCGTGCGCCTGGTTCCTCATGCAACGATGCCTCACCCGGTTAAAGATGTTCGTGTGTTGAGCCGCATCACCACCGAAGCCTTTAACCAGCGTCGTAAAACCATTCGTAACAGCCTCGGCAACCTGTTTAGCGTCGAGGTGTTAACGGGAATGGGGATCGACCCGGCGATGCGAGCGGAAAATATCTCTGTCGCGCAATATTGCCAGATGGCGAACTATCTGGCGGAGAACGCGCCTTTGCAGGAGAGTTAACGA lptD-surA-pdxA-rsmA-apaGH rsmA-apaGH rsmAp 52588 reverse rsmA(51609,52430) apaH(50380,51222) 50380-52588 52430-52588 GGCTTCGGGCGCGGTGTGAACATTACGCTGGGCCTGCCCTTTATTCGCACATCAGTGGACCACGGCACCGCGCTTGAACTGGCGGGACGTGGCAAAGCCGATGTCGGCAGTTTTATTACGGCGCTTAATCTCGCCATCAAAATGATTGTTAACACCCAA lptD-surA-pdxA-rsmA-apaGH imp impp1 57156 reverse lptD(54755,57109) lptD(54755,57109) 54755-57156 57109-57156 GTTTGTCACGCGCAACGTTACCGATGATGGAACAATAAAATCAACGTA lptD-surA-pdxA-rsmA-apaGH imp impp2 57241 reverse lptD(54755,57109) lptD(54755,57109) 54755-57241 57109-57241 ATTCAATGCCGTGCCTAACACCACTGACGCTATTCGGACAGGATTAACACTAGCGTAGAGATGACGAGTACGTTAGTCTCTGACCGTTTGTCACGCGCAACGTTACCGATGATGGAACAATAAAATCAACGTA lptD-surA-pdxA-rsmA-apaGH imp-surA-pdxA impp3 57336 reverse lptD(54755,57109) pdxA(52427,53416) 52427-57336 57109-57336 CAGGGCTATCTCCCACAATATAAAGGTGCTTTTACCGTTTTCCGGCTGCGGTCAATTGTGGGACATCGCCTATAATTTGCATTATCATACCTGTCATTCAATGCCGTGCCTAACACCACTGACGCTATTCGGACAGGATTAACACTAGCGTAGAGATGACGAGTACGTTAGTCTCTGACCGTTTGTCACGCGCAACGTTACCGATGATGGAACAATAAAATCAACGTA rapA-rluA rapA-rluA rapAp1 63358 reverse rapA(60358,63264) rluA(59687,60346) 59687-63358 63264-63358 CCTTTCCATTCCTGGACCTGAATAACACCACTACCTCATAAGCACGGTAGCGGGTGGTTATTGCCTGCAATTAAAGATATAGAGCCGAACACATA rapA-rluA rapA rapAp3 63588 reverse rapA(60358,63264) rapA(60358,63264) 60358-63588 63264-63588 ATGGACCACCAACGGCCCGGAGCCGCTGGACTACCAACGTTCACCACTGGATTACGAACACTATCTGACCCGCCAGCTACAACCCGTGGCGGAGGGAATACTCCCTTTTATTGAGGATAATTTTGCTACACTTATGACCGGGCAACTTGGGCTATTTTGAGCAAAAAAAAGAGTTCGCCAGATACCATTTTGATGCGTGACGAATGCTTTGCCATCCAGTACCATAGCGCCCTTTCCATTCCTGGACCTGAATAACACCACTACCTCATAAGCACGGTAGCGGGTGGTTATTGCCTGCAATTAAAGATATAGAGCCGAACACATA rapA-rluA hepA rapAp2 63588 reverse rapA(60358,63264) rapA(60358,63264) 60358-63588 63264-63588 ATGGACCACCAACGGCCCGGAGCCGCTGGACTACCAACGTTCACCACTGGATTACGAACACTATCTGACCCGCCAGCTACAACCCGTGGCGGAGGGAATACTCCCTTTTATTGAGGATAATTTTGCTACACTTATGACCGGGCAACTTGGGCTATTTTGAGCAAAAAAAAGAGTTCGCCAGATACCATTTTGATGCGTGACGAATGCTTTGCCATCCAGTACCATAGCGCCCTTTCCATTCCTGGACCTGAATAACACCACTACCTCATAAGCACGGTAGCGGGTGGTTATTGCCTGCAATTAAAGATATAGAGCCGAACACATA polB polB polBp 65803 reverse polB(63429,65780) polB(63429,65780) 63429-65803 65780-65803 TGGTTTTTTGATGGATTTTCAGCG araBAD araBAD araBp 70075 reverse araB(68348,70048) araD(65855,66550) rho-independent(65800,65821) 65800-70075 70048-70075 ACCCGTTTTTTTGGATGGAGTGAAACGA 65800-65855 ATGACTGTATAAAACCACAGCCAATCAAACGAAACCAGGCTATACTCAAGCCTGGT araC araC araCp 70223 forward araC(70387,71265) araC(70387,71265) 70223-71265 70223-70387 GCGTTTTTGTCATGGCTTTGGTCCCGCTTTGTTACAGAATGCTTTTAATAAGCGGGGTTACCGGTTGGGTTAGCGAGAAGAGCCAGTAAAAGACGCAGTGACGGCAATGTCTGATGCAATATGGACAATTGGTTTCTTCTCTGAATGGTGGGAGTATGAAAAGTA yabI yabI yabIp 71271 forward yabI(71351,72115) yabI(71351,72115) 71271-72115 71271-71351 AACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCATTTGACAGGCACATTA sgrR-sroA-thiBPQ sroA sroAp 75608 reverse sroA(75516,75608) sroA(75516,75608) 75516-75608 75608-75608 G sgrR-sroA-thiBPQ sgrR-sroA-thiBPQ sgrRp 77338 reverse sgrR(75644,77299) thiQ(72229,72927) 72229-77338 77299-77338 AAATAAAATTGCTGTCTTTTGCACAGGAGTTCCCCTTTTA sgrST-setA sgrST-setA sgrSp 77367 forward sgrS(77367,77593) setA(77621,78799) 77367-78799 77367-77367 G sgrST-setA sgrST-setA sgrSp2 77367 forward sgrS(77367,77593) setA(77621,78799) 77367-78799 77367-77367 G leuLABCD leuLABCD leuLp1 83735 reverse leuL(83622,83708) leuD(78848,79453) 78848-83735 83708-83735 ATATCGCATTCATCTGGAGCTGATTTAA leuLABCD leuL leuLp1 83735 reverse leuL(83622,83708) leuL(83622,83708) rho-independent(83574,83603) 83574-83735 83708-83735 ATATCGCATTCATCTGGAGCTGATTTAA 83574-83622 AGCCAGCACGCAGTCAAACAAAAAACCCGCGCCATTGCGCGGGTTTTTT leuLABCD leuLABCD leuLp2 84024 reverse leuL(83622,83708) leuD(78848,79453) 78848-84024 83708-84024 AAATCAATATCAAAAAAAATCGCAAAACATATAATTCAATACAAATCATCAGGATAGGTTTTGCAACGCGTGCATTTTGTCCCCTTTTTCCTCGTTGATTAGATGCAAAAATTTATGCTGAAATATGTCAACCGATGAAAAGCGTCGGTAGTTAAGCAGAAATTAATATCGCTTACTTTAACCACCGCAGCACAATTAGCTAATTTTACGGATGCAGAACTCACGCTGGCGGGACGTTTTTATTGCGTCAGGGTTGACATCCGTTTTTGTATCCAGTAACTCTAAAAGCATATCGCATTCATCTGGAGCTGATTTAA leuO leuO leuOp1 84154 forward leuO(84368,85312) leuO(84368,85312) 84154-85312 84154-84368 CGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAACCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAGTGGAGTTAAGTA leuO leuO leuOp 84188 forward leuO(84368,85312) leuO(84368,85312) 84188-85312 84188-84368 TAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAACCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAGTGGAGTTAAGTA leuO leuO leuOp3 84298 forward leuO(84368,85312) leuO(84368,85312) 84298-85312 84298-84368 ATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAGTGGAGTTAAGTA leuO leuO leuOp2 84304 forward leuO(84368,85312) leuO(84368,85312) 84304-85312 84304-84368 TTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAGTGGAGTTAAGTA ilvIH ilvIH ilvIp4 85420 forward ilvI(85630,87354) ilvH(87357,87848) 85420-87848 85420-85630 AAAAATAGAGAAATTGCTGTAAGTTGTGGGATTCAGCCGATTTATTATCAATTTAATCCTCTGTAATGGAGGATTTTATCGTTTCTTTTCACCTTTCCTCCTGTTTATTCTTATTACCCCGTGTTTATGTCTCTGGCTGCCAATTGCTTAAGCAAGATCGGACGGTTAATGTGTTTTACACATTTTTTCCGTCAAACAGTGAGGCAGGCCA ilvIH ilvIH ilvIp3 85453 forward ilvI(85630,87354) ilvH(87357,87848) 85453-87848 85453-85630 CAGCCGATTTATTATCAATTTAATCCTCTGTAATGGAGGATTTTATCGTTTCTTTTCACCTTTCCTCCTGTTTATTCTTATTACCCCGTGTTTATGTCTCTGGCTGCCAATTGCTTAAGCAAGATCGGACGGTTAATGTGTTTTACACATTTTTTCCGTCAAACAGTGAGGCAGGCCA ilvIH ilvIH ilvIp2 85540 forward ilvI(85630,87354) ilvH(87357,87848) 85540-87848 85540-85630 GTGTTTATGTCTCTGGCTGCCAATTGCTTAAGCAAGATCGGACGGTTAATGTGTTTTACACATTTTTTCCGTCAAACAGTGAGGCAGGCCA ilvIH ilvIH ilvIHp1 85600 forward ilvI(85630,87354) ilvH(87357,87848) 85600-87848 85600-85630 CATTTTTTCCGTCAAACAGTGAGGCAGGCCA cra cra fruRp8 87947 forward cra(88028,89032) cra(88028,89032) 87947-89032 87947-88028 TTTTCTGCGCTTAGATGTTAATGAATTTAACCCATACCAGTACAATGGCTATGGTTTTTACATTTTACGCAAGGGGCAATTG mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC mraZp 89596 forward mraZ(89634,90092) lpxC(106557,107474) 89596-107474 89596-89634 AATTGTGGGGCAAAGTGGGAATAAGGGGTGAGGCTGGCA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC rsmHp1 90010 forward rsmH(90094,91035) lpxC(106557,107474) 90010-107474 90010-90094 ATCAACAGGTCAAGGAAGATATCGACGCAGAGCAGTTGGCTACCGGAGACTTATCGGAGCGACTGCAGGACTTGTCTCTATAAAA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsLp1 90688 forward ftsL(91032,91397) lpxC(106557,107474) 90688-107474 90688-91032 CATCCCGCGACCCGTACCTTCCAGGCGGTGCGCATTTGGGTAAACAGTGAACTGGAGGAGATAGAGCAGGCGCTAAAAAGCTCGCTCAACGTGCTGGCCCCGGGTGGGCGGCTTTCGATCATCAGCTTCCACTCGCTGGAAGACCGTATTGTGAAACGTTTTATGCGTGAAAACAGCCGCGGTCCGCAAGTTCCGGCAGGGTTACCGATGACTGAAGAGCAGCTCAAAAAACTGGGTGGCCGTCAGCTGCGAGCACTAGGCAAGTTAATGCCGGGCGAAGAAGAGGTGGCTGAGAACCCTCGTGCCCGTAGTTCAGTTCTGCGTATTGCAGAGAGGACGAATGCA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsLp2 91012 forward ftsL(91032,91397) lpxC(106557,107474) 91012-107474 91012-91032 ATTGCAGAGAGGACGAATGCA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsQ ftsQp2 102742 forward ftsQ(103155,103985) ftsQ(103155,103985) 102742-103985 102742-103155 ATTTCAGCACGATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsQAZ ftsQp1 102867 forward ftsQ(103155,103985) ftsZ(105305,106456) 102867-106456 102867-103155 ATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsQAZ ftsQp 102867 forward ftsQ(103155,103985) ftsZ(105305,106456) 102867-106456 102867-103155 ATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCCAATTTGCAGGCATTAGTGCTGAAAGCATGGACGACGTTAGGTTGCAAAGGATGGGGACGTATTGACGTTATGCTGGACAGCGATGGACAGTTTTATCTGCTGGAAGCCAATACCTCACCGGGTATGACCAGCCACAGCCTGGTGCCGATGGCGGCACGTCAGGCAGGTATGAGCTTCTCGCAGTTGGTAGTACGAATTCTGGAACTGGCGGACTAATA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsAZ ftsAp1 103561 forward ftsA(103982,105244) ftsZ(105305,106456) 103561-106456 103561-103982 ATATGGTAGACGCGGAAGGAAATACCTTCAGCGTGCCGCCAGAACGCACCAGCAAGCAGGTGCTTCCAATGCTGTATGGCCCGGAAGGCAGCGCCAATGAAGTGTTGCAGGGCTATCGCGAAATGGGGCAGATGCTGGCAAAGGACAGATTTACTCTGAAGGAAGCGGCGATGACCGCGCGGCGTTCCTGGCAGTTGACGCTGAATAACGATATTAAGCTCAATCTTGGCCGGGGCGATACGATGAAACGTTTGGCTCGCTTTGTAGAACTTTATCCGGTTTTACAGCAGCAGGCGCAAACCGATGGCAAACGGATTAGCTACGTTGATTTGCGTTATGACTCTGGAGCGGCAGTAGGCTGGGCGCCCTTGCCGCCAGAGGAATCTACTCAGCAACAAAATCAGGCACAGGCAGAACAACAA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsZ ftsZp4 104636 forward ftsZ(105305,106456) ftsZ(105305,106456) 104636-106456 104636-105305 GCCGTTTATACCGGTGGGGCATTGCGCCACACTAAGGTAATTCCTTATGCTGGCAATGTCGTGACCAGTGATATCGCTTACGCCTTTGGCACGCCGCCAAGCGACGCCGAAGCGATTAAAGTTCGCCACGGTTGTGCGCTGGGTTCCATCGTTGGAAAAGATGAGAGCGTGGAAGTGCCGAGCGTAGGTGGTCGTCCGCCACGGAGTCTGCAACGTCAGACACTGGCAGAGGTGATCGAGCCGCGCTATACCGAGCTGCTCAACCTGGTCAACGAAGAGATATTGCAGTTGCAGGAAAAGCTTCGCCAACAAGGGGTTAAACATCACCTGGCGGCAGGCATTGTATTAACCGGTGGCGCAGCGCAGATCGAAGGTCTTGCAGCCTGTGCTCAGCGCGTGTTTCATACGCAAGTGCGTATCGGCGCGCCGCTGAACATTACCGGTTTAACGGATTATGCTCAGGAGCCGTATTATTCGACGGCGGTGGGATTGCTTCACTATGGGAAAGAGTCACATCTTAACGGTGAAGCTGAAGTAGAAAAACGTGTTACAGCATCAGTTGGCTCGTGGATCAAGCGACTCAATAGTTGGCTGCGAAAAGAGTTTTAATTTTTATGAGGCCGACGATGATTACGGCCTCAGGCGACAGGCACAAATCGGAGAGAAACTA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsZ ftsZp3 104693 forward ftsZ(105305,106456) ftsZ(105305,106456) 104693-106456 104693-105305 GTCGTGACCAGTGATATCGCTTACGCCTTTGGCACGCCGCCAAGCGACGCCGAAGCGATTAAAGTTCGCCACGGTTGTGCGCTGGGTTCCATCGTTGGAAAAGATGAGAGCGTGGAAGTGCCGAGCGTAGGTGGTCGTCCGCCACGGAGTCTGCAACGTCAGACACTGGCAGAGGTGATCGAGCCGCGCTATACCGAGCTGCTCAACCTGGTCAACGAAGAGATATTGCAGTTGCAGGAAAAGCTTCGCCAACAAGGGGTTAAACATCACCTGGCGGCAGGCATTGTATTAACCGGTGGCGCAGCGCAGATCGAAGGTCTTGCAGCCTGTGCTCAGCGCGTGTTTCATACGCAAGTGCGTATCGGCGCGCCGCTGAACATTACCGGTTTAACGGATTATGCTCAGGAGCCGTATTATTCGACGGCGGTGGGATTGCTTCACTATGGGAAAGAGTCACATCTTAACGGTGAAGCTGAAGTAGAAAAACGTGTTACAGCATCAGTTGGCTCGTGGATCAAGCGACTCAATAGTTGGCTGCGAAAAGAGTTTTAATTTTTATGAGGCCGACGATGATTACGGCCTCAGGCGACAGGCACAAATCGGAGAGAAACTA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC ftsZ ftsZp2 105045 forward ftsZ(105305,106456) ftsZ(105305,106456) 105045-106456 105045-105305 AAGTGCGTATCGGCGCGCCGCTGAACATTACCGGTTTAACGGATTATGCTCAGGAGCCGTATTATTCGACGGCGGTGGGATTGCTTCACTATGGGAAAGAGTCACATCTTAACGGTGAAGCTGAAGTAGAAAAACGTGTTACAGCATCAGTTGGCTCGTGGATCAAGCGACTCAATAGTTGGCTGCGAAAAGAGTTTTAATTTTTATGAGGCCGACGATGATTACGGCCTCAGGCGACAGGCACAAATCGGAGAGAAACTA mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC lpxC lpxCp1 106508 forward lpxC(106557,107474) lpxC(106557,107474) rho-independent(107501,107544) 106508-107544 106508-106557 GAATGTATAGTACACTTCGGTTGGATAGGTAATTTGGCGAGATAATACGA 107474-107544 ACGACATTTATACTGTCGTATAAAATTCGACTGGCAAATCTGGCACTCTCTCCGGCCAGGTGAACCAGTCG mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC lpxC lpxCp2 106530 forward lpxC(106557,107474) lpxC(106557,107474) 106530-107474 106530-106557 GGATAGGTAATTTGGCGAGATAATACGA ppdD-hofBC ppdD-hofBC ppdDp 117705 reverse ppdD(117109,117549) hofC(114522,115724) 114522-117705 117549-117705 TCCCCAACTTTCTTCGTAACGCCTCGCAAATTTCTTGTCTTTCGCTGCAACGAAATAAAAAACCTCGGAATCTGCTTTCCCGTTTCGTTTTTTGCCCCTCGCCTGTGCTGATGGCGTTTGCCAAAGTAGCGCCAACCAAATCAAGGAGCGAAACAGA nadC nadC nadCp 118663 reverse nadC(117752,118645) nadC(117752,118645) 117752-118663 118645-118663 GCTATCTGGAGTTTTAACA ampDE ampDE ampD 118703 forward ampD(118733,119284) ampE(119281,120135) 118703-120135 118703-118733 GTATTAGCACCACATATAAGGAGATCCTGCA aroP aroP aroPp2 121650 reverse aroP(120178,121551) aroP(120178,121551) rho-independent(120144,120168) 120144-121650 121551-121650 AACTTCTTTGATGTAAACAAATTAATACAACAAACGGAATTGCAAACTTACACACGCATCACTGCGTAGATCAAAAAAACAACCACCGCACGAGGTTTCA 120144-120178 ATCTCTCTACGCCCTCACCCGTACAGGGTGAGGGC aroP aroP aroPp1 121671 reverse aroP(120178,121551) aroP(120178,121551) rho-independent(120144,120168) 120144-121671 121551-121671 AAGTCTTTTTGTAACAATTCAAACTTCTTTGATGTAAACAAATTAATACAACAAACGGAATTGCAAACTTACACACGCATCACTGCGTAGATCAAAAAAACAACCACCGCACGAGGTTTCA 120144-120178 ATCTCTCTACGCCCTCACCCGTACAGGGTGAGGGC pdhR-aceEF-lpd pdhR-aceEF-lpdA pdhRp 122034 forward pdhR(122092,122856) lpd(127912,129336) rho-independent(129366,129394) 122034-129394 122034-122092 ACAGACATGAAATTGGTAAGACCAATTGACTTCGGCAAGTGGCTTAAGACAGGAACTCA 129336-129394 ATTTTTCGTTTGCCGGAACATCCGGCAATTAAAAAAGCGGCTAACCACGCCGCTTTTTT pdhR-aceEF-lpd pdhR-aceEF-lpdA pdhRp2 122034 forward pdhR(122092,122856) lpd(127912,129336) rho-independent(129366,129394) 122034-129394 122034-122092 ACAGACATGAAATTGGTAAGACCAATTGACTTCGGCAAGTGGCTTAAGACAGGAACTCA 129336-129394 ATTTTTCGTTTGCCGGAACATCCGGCAATTAAAAAAGCGGCTAACCACGCCGCTTTTTT pdhR-aceEF-lpd aceEF aceEp1 122969 forward aceE(123017,125680) aceF(125695,127587) rho-independent(127590,127619) 122969-127619 122969-123017 GACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCA 127587-127619 AGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTT pdhR-aceEF-lpd aceEF aceEp2 122969 forward aceE(123017,125680) aceF(125695,127587) rho-independent(127590,127619) 122969-127619 122969-123017 GACAGGTTCCAGAAAACTCAACGTTATTAGATAGATAAGGAATAACCCA 127587-127619 AGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTT pdhR-aceEF-lpd lpdA lpdAp 127717 forward lpd(127912,129336) lpd(127912,129336) rho-independent(129366,129394) 127717-129394 127717-127912 GGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTCACATACCCTATGGATTTCTGGGTGCAGCAAGGTAGCAAGCGCCAGAATCCCCAGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGCTAACGCCGCTGCGGCCTGAAAGACGACGGGTATGACCGCCGGAGATAAATATATAGAGGTCATGA 129336-129394 ATTTTTCGTTTGCCGGAACATCCGGCAATTAAAAAAGCGGCTAACCACGCCGCTTTTTT acnB acnB acnBp1 131519 forward acnB(131615,134212) acnB(131615,134212) rho-independent(134249,134272) 131519-134272 131519-131615 TGCGGTACTGGGCATTTACCCTACAAACTGCTGTCTCACAGGAGCGTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCG 134212-134272 AAAAGTCAGCGCACGCGCTGCGCATAAACGACACAATGCCCGGTGAATGAGATTCCCGGGC acnB acnB acnBp2 131564 forward acnB(131615,134212) acnB(131615,134212) 131564-134212 131564-131615 GTGAAGAGAATCGCCTGCCGCACTATGACAATGAGAGCGAGGAGAACCGTCG yacL yacL yacLp 134339 forward yacL(134388,134750) yacL(134388,134750) 134339-134750 134339-134388 AATGGCGCAATGCGATTTCGGTGCATTGCCGGGAGCAGAGGAACACACTA yacC-speED speD speDp 135717 reverse speD(134788,135582) speD(134788,135582) rho-independent(134756,134783) 134756-135717 135582-135717 ATTCAGGCGCGTTTTCTCGCCTCTGGCCTGAAATGCCGTTATTACAATCCGGCAATCCATACGGCAGCTTTTGCCTTACCTCAGTATCTGCAAGACGCACTGGCTTCACAGCCGTCCTAAGGAGAAGATAAGAAAT 134756-134788 ACGGCTCTGGCGGAGCTCCCAGGCTCCGCCAGA yacC-speED speE speEp 136504 reverse speE(135598,136464) speE(135598,136464) 135598-136504 136464-136504 GCCCTTTTTTTACGGGTGTTAACAAAGGAGGTATCAACCCA yacC-speED yacC-speED yacCp 136940 reverse yacC(136570,136917) speD(134788,135582) rho-independent(134756,134783) 134756-136940 136917-136940 TCTTTAAGCCCCTGGTAGAAGCAA 134756-134788 ACGGCTCTGGCGGAGCTCCCAGGCTCCGCCAGA cueO cueO cueOp 137045 forward cueO(137083,138633) cueO(137083,138633) 137045-138633 137045-137083 TGATTTTGTTTCGCCTGCTTAAGAATAAGGAAATAACTA gcd gcd gcdp1 141263 reverse gcd(138835,141225) gcd(138835,141225) rho-independent(138801,138816) 138801-141263 141225-141263 GCTACTAAAATATTAATGAATTGAAATGGTGTCTCTTTA 138801-138835 AGACTTGCTCAGATTGCTGACAACGTGCGCGTTGT gcd gcd gcdp2 141279 reverse gcd(138835,141225) gcd(138835,141225) rho-independent(138801,138816) 138801-141279 141225-141279 AAACCTATAATTAATTGCTACTAAAATATTAATGAATTGAAATGGTGTCTCTTTA 138801-138835 AGACTTGCTCAGATTGCTGACAACGTGCGCGTTGT hpt hpt hptp 141360 forward hpt(141431,141967) hpt(141431,141967) 141360-141967 141360-141431 CTTGCGCTTTGTTGCGGTGCCAAAACCTGCCCGTGCGAAGTGATTTGTTTTTAAATCATATGGTTAGAGATA can can canp 142703 reverse can(142008,142670) can(142008,142670) 142008-142703 142670-142703 ACGTAATTATTTGGTTACAGGTCGTTAACCTCCA can can canp2 142703 reverse can(142008,142670) can(142008,142670) 142008-142703 142670-142703 ACGTAATTATTTGGTTACAGGTCGTTAACCTCCA panD panD panDp1 146745 reverse panD(146314,146694) panD(146314,146694) 146314-146745 146694-146745 CAAAGCAGGCATCGCCTGCTTCGTTAACGACAGGGTAGAAAGGTAGAAGTTA panD panD panDp2 146754 reverse panD(146314,146694) panD(146314,146694) 146314-146754 146694-146754 GAATTTCCTCAAAGCAGGCATCGCCTGCTTCGTTAACGACAGGGTAGAAAGGTAGAAGTTA panBC panBC panBp 149630 reverse panB(148807,149601) panC(147944,148795) 147944-149630 149601-149630 AGCACAACATCAATTTATCAGGATACGTTA yadV-htrE yadV-htrE yadVp3 156214 reverse yadV(155461,156201) htrE(152829,155426) 152829-156214 156201-156214 TCAGGGATGGTTTA yadV-htrE yadV-htrE yadVp2 156224 reverse yadV(155461,156201) htrE(152829,155426) 152829-156224 156201-156224 ATTAACTCTATCAGGGATGGTTTA yadV-htrE yadV-htrE yadVp1 156235 reverse yadV(155461,156201) htrE(152829,155426) 152829-156235 156201-156235 TCCCTGTTTTAATTAACTCTATCAGGGATGGTTTA pcnB-folK pcnB-folK pcnBp1 159151 reverse pcnB(157729,159126) folK(157253,157732) 157253-159151 159126-159151 ATGTTTGACACTACCGAGGTGTACTA pcnB-folK pcnB-folK pcnBp3 159171 reverse pcnB(157729,159126) folK(157253,157732) 157253-159171 159126-159171 CTATTTTTTTGTCCTGAATGATGTTTGACACTACCGAGGTGTACTA pcnB-folK pcnB-folK pcnBp 159171 reverse pcnB(157729,159126) folK(157253,157732) 157253-159171 159126-159171 CTATTTTTTTGTCCTGAATGATGTTTGACACTACCGAGGTGTACTA pcnB-folK pcnB-folK pcnBp2 159195 reverse pcnB(157729,159126) folK(157253,157732) 157253-159195 159126-159195 GTCATGCTGAGCTATGATTAGCCGCTATTTTTTTGTCCTGAATGATGTTTGACACTACCGAGGTGTACTA pcnB-folK pcnB-folk pcnBp4 159391 reverse pcnB(157729,159126) folK(157253,157732) 157253-159391 159126-159391 AGCAGAATCATGCGCCTGCGTTGCCGAAAGGCGATCCACGCCCGGTACTAATCGCGGCACTTCAATTTCTGGGGCAGCAGGCAGAAGCACACTGGCAGGATTTCAGCGTCGAGCAAATCCTTCAGTCAGCCGTCAAAAACTGGCGGCTTACCGCCGTGCCCGAGTCGGCAATTGTAAATTCAACATTCTCAAATGCGTCATGCTGAGCTATGATTAGCCGCTATTTTTTTGTCCTGAATGATGTTTGACACTACCGAGGTGTACTA sfsA-dksA-gluQ dksA-yadB dksAp2 160657 reverse dksA(160149,160604) gluQ(159186,160112) 159186-160657 160604-160657 CTCATTTTTCCCCCGAACATGGGGATCGATAGTGCGTGTTAAGGAGAAGCAACA sfsA-dksA-gluQ dksA-yadB dksAp1 160722 reverse dksA(160149,160604) gluQ(159186,160112) 159186-160722 160604-160722 CACAGTTGTCAAGTGTTACGTTTAGATAATTGCTATCCGGAAAAGCATCTGCTATTTATAGCGGCCTCATTTTTCCCCCGAACATGGGGATCGATAGTGCGTGTTAAGGAGAAGCAACA sfsA-dksA-gluQ dksA-gluQ dksAp3 160751 reverse dksA(160149,160604) gluQ(159186,160112) 159186-160751 160604-160751 GGTCGCGTGCGCAAATACGCTTTTCCTCACACAGTTGTCAAGTGTTACGTTTAGATAATTGCTATCCGGAAAAGCATCTGCTATTTATAGCGGCCTCATTTTTCCCCCGAACATGGGGATCGATAGTGCGTGTTAAGGAGAAGCAACA sfsA-dksA-gluQ sfsA-dksA sfsAp 161515 reverse sfsA(160782,161486) dksA(160149,160604) 160149-161515 161486-161515 GCGCTAACGCAATAACAAGGATTGTCGCAA mrcB mrcB mrcBp 164721 forward mrcB(164730,167264) mrcB(164730,167264) 164721-167264 164721-164730 AGAAAAAGCA fhuACDB fhuACDB fhuAp 167442 forward fhuA(167484,169727) fhuB(171462,173444) 167442-173444 167442-167484 TCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAA hemL hemL hemLp1 174902 reverse hemL(173602,174882) hemL(173602,174882) 173602-174902 174882-174902 CTACGAATCAGGAACCCTCCA hemL hemL hemLp 174921 reverse hemL(173602,174882) hemL(173602,174882) 173602-174921 174882-174921 TAGCAGCCATTCACTTTTTCTACGAATCAGGAACCCTCCA hemL hemL hemLp2 174941 reverse hemL(173602,174882) hemL(173602,174882) 173602-174941 174882-174941 TTGTTATGAATAACATAGAATAGCAGCCATTCACTTTTTCTACGAATCAGGAACCCTCCA erpA erpA erpAp 176561 forward erpA(176610,176954) erpA(176610,176954) 176561-176954 176561-176610 ATTATTGGGTTAGAATTTGCCCAATTGCCGATGTCGTTTGGAGCAAAATA mtn-btuF-yadS mnt-btuF-yadS mtnp 179183 reverse mtn(178455,179153) yadS(177001,177624) 177001-179183 179153-179183 CTTCAAATCGGGCTTATCGCGAGTAAATCTA mtn-btuF-yadS mnt-btuF-yadS mtnp2 179183 reverse mtn(178455,179153) yadS(177001,177624) 177001-179183 179153-179183 CTTCAAATCGGGCTTATCGCGAGTAAATCTA dgt dgt dgtp1 179196 forward dgt(179237,180754) dgt(179237,180754) 179196-180754 179196-179237 ATGCGCTTACGGGGAAGCGTATTTCTCACGCGGGAGAGGACA dgt dgt dgtp2 179214 forward dgt(179237,180754) dgt(179237,180754) 179214-180754 179214-179237 GTATTTCTCACGCGGGAGAGGACA degP degP degPp 180845 forward degP(180884,182308) degP(180884,182308) 180845-182308 180845-180884 CAGCAATTTTGCGTTATCTGTTAATCGAGACTGAAATACA cdaR cdaR cdaRp 182447 forward cdaR(182463,183620) cdaR(182463,183620) 182447-183620 182447-182463 GCATAACGGAGGACTTA map-glnD-dapD dapD dapDp 185977 reverse dapD(185123,185947) dapD(185123,185947) rho-independent(185090,185111) 185090-185977 185947-185977 TGTGTTTACTGATATGAAAAGAGTTTAACAA 185090-185123 AAAGTATGCACACGGGCAGCACGACGCTGCCCGA map-glnD-dapD glnD glnDp 188655 reverse glnD(185978,188650) glnD(185978,188650) 185978-188655 188650-188655 GCACAA tff-rpsB-tsf rpsB-tsf rpsBp 189712 forward tff(189712,189847) tsf(190857,191708) rho-independent(191721,191738) 189712-191738 189712-189712 C 191708-191738 ATTATCAAAAAGGAGCCGCCTGAGGGCGGCT pyrH pyrH pyrHp 191812 forward pyrH(191855,192580) pyrH(191855,192580) 191812-192580 191812-191855 AGTATTAATTCATTTCAATCGTTGACAGTCTCAGGAAAGAAACA frr frr frrp 192814 forward frr(192872,193429) frr(192872,193429) rho-independent(193442,193498) 192814-193498 192814-192872 ACTTCCACTGTGTGTGACTGTCTGGTCTGACTGAGACAAGTTTTCAAGGATTCGTAACG 193429-193498 ATTTCTTGAACGACAAAAACGCCGCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGCTTTTTATT dxr-ispZU-cdsA uppS-cdsA ispUp1 194784 forward ispZ(194784,194844) cdsA(195677,196534) 194784-196534 194784-194784 A dxr-ispZU-cdsA uppS-cdsA ispUp2 194901 forward ispU(194903,195664) cdsA(195677,196534) 194901-196534 194901-194903 GCG rseP rseP rsePp 196470 forward rseP(196546,197898) rseP(196546,197898) 196470-197898 196470-196546 ATAGCCTGACGGCTGCGGTACCGGTCTTTGCTTGCTTGTTGTTACTGGTATTCAGGACGCTTTAACGGAAGGTAATA bamA-skp-lpxD-fabZ-lpxAB-rnhB-dnaE bamA-hlpA-lpxD-fabZ-lpxAB-rnhB-dnaE bamAp2 197026 forward bamA(197928,200360) dnaE(205126,208608) 197026-208608 197026-197928 GATTGGGATGCCGTGCGTTTGCAGTTGGTCGATAAAATTGGCGATGAAAGCACCACCATTACAGTAGCGCCATTTGGCAGCGACCAACGGCGGGATGTAAAGCTCGATTTACGTCACTGGGCGTTTGAGCCTGATAAAGAAGATCCGGTATCTTCGCTGGGGATTCGTCCTCGTGGGCCGCAAATTGAACCTGTACTGGAAAATGTGCAGCCAAACTCGGCGGCAAGCAAGGCAGGTTTGCAAGCAGGCGACAGGATCGTTAAAGTCGATGGTCAGCCCTTAACGCAGTGGGTGACCTTTGTGATGCTTGTCCGGGATAACCCGGGTAAATCCTTAGCGTTAGAAATCGAAAGGCAGGGGAGTCCCTTGTCTTTGACATTAATCCCGGAGAGTAAACCGGGTAATGGTAAAGCGATTGGTTTTGTCGGTATTGAGCCGAAAGTCATTCCTTTGCCAGATGAGTATAAAGTTGTACGCCAGTATGGGCCGTTCAACGCCATCGTCGAAGCCACGGACAAAACGTGGCAGCTGATGAAGCTGACGGTCAGTATGCTGGGAAAATTGATCACCGGTGATGTGAAACTGAACAACCTCAGTGGGCCGATCTCTATCGCCAAGGGGGCTGGGATGACAGCGGAACTCGGGGTTGTTTATTACCTGCCGTTTCTTGCGCTTATTAGCGTGAACTTAGGGATAATTAACCTGTTTCCGTTGCCCGTACTTGACGGGGGGCATCTGCTGTTCCTTGCGATCGAAAAGATCAAGGGCGGACCGGTATCCGAGCGGGTTCAAGACTTTTGTTATCGCATTGGCTCGATTCTGCTGGTGCTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTATGAGAGTTAGTTAGGAAGAACGCATAATAACGA bamA-skp-lpxD-fabZ-lpxAB-rnhB-dnaE bamA bamAp1 197821 forward bamA(197928,200360) bamA(197928,200360) 197821-200360 197821-197928 TTTTGTTATCGCATTGGCTCGATTCTGCTGGTGCTGTTAATGGGGCTTGCACTTTTCAATGATTTCTCTCGGTTATGAGAGTTAGTTAGGAAGAACGCATAATAACGA bamA-skp-lpxD-fabZ-lpxAB-rnhB-dnaE hlpA-lpxD-fabZ-lpxA hlpAp 200455 forward skp(200482,200967) lpxA(202560,203348) 200455-203348 200455-200482 TGCAAATGGGATGGTAAGGAGTTTATTG bamA-skp-lpxD-fabZ-lpxAB-rnhB-dnaE lpxD lpxDp 200960 forward lpxD(200971,201996) lpxD(200971,201996) 200960-201996 200960-200971 TTAAATAAGTAA accA accA accAp2 208326 forward accA(208621,209580) accA(208621,209580) 208326-209580 208326-208621 TCGCGAAGTGATGGATATTGACGAAGCCCGGGAAAAATATGCTCGCGGGCTTGCTATCTCGCTGACGGACAGGCAAATTGATGACCAGCTTTTAAACCGACTCCGTCAGTCTCTGGAACCCCACCGCTCTGGGACAATTCCAGTACATCTCTACTATCAGAGGGCGGATGCACGCGCGCGGTTGCGTTTTGGCGCGACGTGGCGTGTCTCTCCGAGCGATCGTTTATTAAACGATCTCCGTGGCCTCATTGGTTCGGAGCAGGTGGAACTGGAGTTTGACTAATACAGGAATACTA accA accA accAp1 208411 forward accA(208621,209580) accA(208621,209580) 208411-209580 208411-208621 CAGCTTTTAAACCGACTCCGTCAGTCTCTGGAACCCCACCGCTCTGGGACAATTCCAGTACATCTCTACTATCAGAGGGCGGATGCACGCGCGCGGTTGCGTTTTGGCGCGACGTGGCGTGTCTCTCCGAGCGATCGTTTATTAAACGATCTCCGTGGCCTCATTGGTTCGGAGCAGGTGGAACTGGAGTTTGACTAATACAGGAATACTA yaeP-rof yaeP-rof yaePp 214187 reverse yaeP(213925,214125) rof(213678,213932) 213678-214187 214125-214187 GTTTATCTTCGTAGGCTTAGACTTGCATCCACGGTTAAGTCAGAGTGCTGACAGGAGGGCATG yaeQ-arfB-nlpE yaeQ-arfB-nlpE yaeQp 214280 forward yaeQ(214291,214836) nlpE(215269,215979) 214280-215979 214280-214291 GGAGTTTTCTTA proS proS proSp 218837 reverse proS(217057,218775) proS(217057,218775) rho-independent(217020,217051) 217020-218837 218775-218837 ACTTTTTTTTGTCCCAGGCTCGCCTTGAGCCTGTTCTACCTTCCAACTGGAACCGTAACAACA 217020-217057 ATGCCAGAAAGGGTCCTGAATTTCAGGGCCCTTTTTTT metNIQ metNIQ metNp 222714 reverse metN(221614,222645) metQ(220113,220928) 220113-222714 222645-222714 ATTGACGGCGTTGCCCGTTTCAGGCATTCGAGATGCCACGACTAACTTAATGACGATAATAAATAATCAA gmhB gmhB gmhBp 222806 forward gmhB(222833,223408) gmhB(222833,223408) 222806-223408 222806-222833 ACATGCCTTATTAAGGAGCTATAAAAGG rrsH-ileV-alaV-rrlH-rrfH rrsH-ileV-alaV-rrlH-rrfH rrsHp1 223485 forward rrsH(223771,225312) rrfH(228756,228875) 223485-228875 223485-223771 ATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTA rrsH-ileV-alaV-rrlH-rrfH rrsH-ileV-alaV-rrlH-rrfH rrsHp 223485 forward rrsH(223771,225312) rrfH(228756,228875) 223485-228875 223485-223771 ATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTA rrsH-ileV-alaV-rrlH-rrfH rrsH-ileV-alaV-rrlH-rrfH rrsHp2 223593 forward rrsH(223771,225312) rrfH(228756,228875) 223593-228875 223593-223771 CCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTA dkgB dkgB dkgBp 229098 forward dkgB(229167,229970) dkgB(229167,229970) 229098-229970 229098-229167 CTTTTTCCTCAACAGTCTGAAGCCCATAATCACCTCAGTTAACGAAAATAGCATTAAAAGAGGCATATTA yafDE yafDE yafDp 231064 forward yafD(231122,231922) yafE(231926,232549) 231064-232549 231064-231122 ACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAG dnaQ dnaQ dnaQp1 235934 forward dnaQ(236067,236798) dnaQ(236067,236798) 235934-236798 235934-236067 GCCGTAACCCCCAGGTCCTGGATTGCCCAGACACGAACCATCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTA dnaQ dnaQ dnaQp2 236017 forward dnaQ(236067,236798) dnaQ(236067,236798) 236017-236798 236017-236067 CTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTA rnhA rnhA rnhAp 236041 reverse rnhA(235535,236002) rnhA(235535,236002) 235535-236041 236002-236041 GTTTTACAGTTCGATTCAATTACAGGAAGTCTACCAGAGA aspV aspV aspVp 236913 forward aspV(236931,237007) aspV(236931,237007) rho-independent(237031,237067) 236913-237067 236913-236931 CCCAACGGAACACAACGCG 237007-237067 ACTATTCACTCATGAAAATGAGTTCAGAGAGCCGCAAGATTTTTAATTTTGCGGTTTTTTT yafV yafV yafVp 240216 reverse yafV(239419,240189) yafV(239419,240189) 239419-240216 240189-240216 ACCCTTCGCATAAAGGAGTTGTACACCG fadE fadE fadEp 243406 reverse fadE(240859,243303) fadE(240859,243303) 240859-243406 243303-243406 TTGTTGTAATTATATTGTAAACATATTGCTAAATGTTTTTACATCCACTACAACCATATCATCACAAGTGGTCAGACCTCCTACAAGTAAGGGGCTTTTCGTTA dinJ-yafQ dinJ-yafQ dinJp 246615 reverse dinJ(246242,246502) yafQ(245961,246239) 245961-246615 246502-246615 TTTCAGTTAATTATGTAAAAACATCCGTTTATTAAATTACTCATGGATTGTCGCTGTTGCTCATTTGAGCTACAATTCAAGCTGAATAAATATACAGCACAGGAGATACCCCAA dinB-yafNOP dinB-yafNOP dinBp 250880 forward dinB(250898,251953) yafP(252709,253161) 250880-253161 250880-250898 AGTGTTGAGAGGTGAGCAA dinB-yafNOP dinB-yafNOP dinBp2 250880 forward dinB(250898,251953) yafP(252709,253161) 250880-253161 250880-250898 AGTGTTGAGAGGTGAGCAA dinB-yafNOP yafNOP yafNp 251969 forward yafN(252005,252298) yafP(252709,253161) 251969-253161 251969-252005 ATATTCTGGTGTGCATTATTATGAGGGTATCACTGTA pepD pepD pepDp3 255737 reverse pepD(254259,255716) pepD(254259,255716) 254259-255737 255716-255737 TGATCGACAAGGAGACTTAACG pepD pepD pepDp2 255776 reverse pepD(254259,255716) pepD(254259,255716) 254259-255776 255716-255776 TTTCTGCTAACCCTGTGACCTGCAATACTGTTTTGCGGGTGATCGACAAGGAGACTTAACG pepD pepD pepDp1 255809 reverse pepD(254259,255716) pepD(254259,255716) 254259-255809 255716-255809 ATATCTCGCAAGCCTGTCTTGTGTTGACAACATTTTCTGCTAACCCTGTGACCTGCAATACTGTTTTGCGGGTGATCGACAAGGAGACTTAACG gpt gpt gptp 255914 forward gpt(255977,256435) gpt(255977,256435) rho-independent(256442,256474) 255914-256474 255914-255977 GCGCAACCTATTTTCCCCTCGAACACTTTTTAAGCCGTAGATAAACAGGCTGGGACACTTCACA 256435-256474 ATCTTTTCAACGCCTGGCACTGCCGGGCGTTGTTCTTTTT frsA frsA frsAp 256502 forward frsA(256527,257771) frsA(256527,257771) 256502-257771 256502-256527 AGTAAGTATTCTGGAGGCTGCATCCA phoE phoE phoEp 260158 reverse phoE(259045,260100) phoE(259045,260100) 259045-260158 260100-260158 GTTTTCAACGGGACTCTCCCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAA thrW thrW thrWp 262841 forward thrW(262871,262946) thrW(262871,262946) 262841-262946 262841-262871 GATTCACGTTCGTGAACATGTCCTTTCAGGG yafY-ykfBF-yafX-ykfGH-yafW-ykfI ykfBF-yafX-ykfGH-yafW-ykfI ykfBp1 266158 reverse ykfB(265620,266087) ykfI(263328,263669) 263328-266158 266087-266158 ACTGATGGGGCAGCTACTGATACCCTCGAACCCTGACAATCAGGAATAAAACAACGACAAAGGAGACAAGAA yafY-ykfBF-yafX-ykfGH-yafW-ykfI ykfBF-yafX-ykfGH-yafW-ykfI ykfBp2 266227 reverse ykfB(265620,266087) ykfI(263328,263669) 263328-266227 266087-266227 ACTGGAATACCAGGAGGTGACGGACCCGTATACCAAAGAAAAATACTTTGAGTACGCCCATGACGGCAAACTGATGGGGCAGCTACTGATACCCTCGAACCCTGACAATCAGGAATAAAACAACGACAAAGGAGACAAGAA ykfA-yafZ yafZ yafZp 268026 reverse yafZ(267184,268005) yafZ(267184,268005) 267184-268026 268005-268026 CCCGTTATGAGGAGTCTGCTTA insN-1p 270226 (267184,268005) insN(,) - argF argF argFp 290340 reverse argF(289301,290305) argF(289301,290305) 289301-290340 290305-290340 AATTCAATAAGTGGCGTTCGCCATGCGAGGATAAAA yagK yagK yagKp6 293118 reverse yagK(292322,292948) yagK(292322,292948) 292322-293118 292948-293118 GTGTACTCTTACTACCTGTATTCACCAGTAAGAGTAGTAATCAGATCAGTATGTCCGTACTAAAATCTGATACCAGTATATACCGACAACAGTGACCAGGAATAGCCCTGCCTGTATGGCATCCCTGTACGGTCTGCTATAGACCGTAGGACCAAATACAGGTATATATTA ecpBCDE ecpBCDE ecpBp2 310076 reverse ecpB(309358,310026) ecpE(304495,305205) 304495-310076 310026-310076 GATGTACCAGCAGGGGTAGCCCCCCTGCTTTATTCCTGGACGGAATTGTTA ecpBCDE ecpBCDE ecpBp1 310119 reverse ecpB(309358,310026) ecpE(304495,305205) 304495-310119 310026-310119 GTTAGCGTACAGTTCGACGCGACCTGGACCAGTTAATCTCTCTGATGTACCAGCAGGGGTAGCCCCCCTGCTTTATTCCTGGACGGAATTGTTA ecpA ecpA ecpAp 310797 reverse ecpA(310084,310671) ecpA(310084,310671) 310084-310797 310671-310797 GCGTAATGCTGAGGCCAAGCTGTACTCAAAAATATATAAGTTGGTTCAGTAAACTCCAGGCAAGTTAGTTTTAAAAAATGACTCACTGGGACATCACGTCCTCAATTCAACTCGGGAAGAAATGCAA matA ecpR ecpRp 311393 reverse matA(310746,311336) matA(310746,311336) 310746-311393 311336-311393 CTTCCGGTTTACTAAGGAAACTGAATGCACCTGTAAAAATTACAGGTTTGGAAAGTAG ykgMO ykgMO ykgMp 312805 reverse ykgM(312514,312777) ykgO(312374,312514) 312374-312805 312777-312805 TTATGTTATAACATAACAGGTAAAAATGA ykgR ykgR ykgRp 313285 reverse ykgR(313141,313242) ykgR(313141,313242) 313141-313285 313242-313285 GGCACTTACGAAGTGCACTCTTTTTTAAAGCGAGGAAGTACCAA rclABC rclABC rclAp 320215 reverse rclA(318676,320001) rclC(317726,318319) 317726-320215 320001-320215 GAGTGGTTTTTGATTACAAACACCAACAATCTTAGTAAATAACTAATCTAATACCATCAAATAGTTAATCATGATTTTTGTTTTGTGATTCTGATTAAGAAAAAGAAAATATCAGACGATAAGACAAAATATCAAGCGTTGTGAAGAAATGTTATTTGCTCTTTTGCGTCTATAGTCATGATGTCAAATGAACGCGTTTCGACAGGAAATCATCA betIBA betIBA betIp 329361 reverse betI(328747,329334) betA(325577,327247) 325577-329361 329334-329361 ACACCGCTGATGAATGGAGTGGCGAAAA betT betT betTp 329421 forward betT(329463,331496) betT(329463,331496) 329421-331496 329421-329463 GAATTTGATTTTAAATAGTAACAATAACAGTGGGGATACTGGA pdeL pdeL pdeLp2 331873 forward pdeL(332371,333459) pdeL(332371,333459) 331873-333459 331873-332371 CTGAATGGATTCAGTCTTAATGAGTGGGTTTTTAAGGGACAGGCATAGAGTAATGATACGTATGCATAACCAACATCTTTACTCATTATGTCATTGAATGTTGACGCTATGTGTTTATGAGGGAGAGGTATTTTCAGTTGATCTGGATTGTTAAATTCATATAATGCGCCTTTGCTCATGAATGGATGCCAGTATGTAGTGGGAAATTATAAATATTGAAATAGTCCAACTACTTCTTTATTACCAAAAATGAGTATCTGAATTTTAATATTGCATTCTTGCGTGATTATCTCCTGAGTTTGACTTGTGATTACCTTTTTAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCA pdeL pdeL pdeLp1 332039 forward pdeL(332371,333459) pdeL(332371,333459) 332039-333459 332039-332371 CGCCTTTGCTCATGAATGGATGCCAGTATGTAGTGGGAAATTATAAATATTGAAATAGTCCAACTACTTCTTTATTACCAAAAATGAGTATCTGAATTTTAATATTGCATTCTTGCGTGATTATCTCCTGAGTTTGACTTGTGATTACCTTTTTAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCA pdeL pdeL pdeLp3 332043 forward pdeL(332371,333459) pdeL(332371,333459) 332043-333459 332043-332371 TTTGCTCATGAATGGATGCCAGTATGTAGTGGGAAATTATAAATATTGAAATAGTCCAACTACTTCTTTATTACCAAAAATGAGTATCTGAATTTTAATATTGCATTCTTGCGTGATTATCTCCTGAGTTTGACTTGTGATTACCTTTTTAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCA yahDEFG yahE yahEp 335739 forward yahE(335925,336788) yahE(335925,336788) 335739-336788 335739-335925 ATTAAACAGCAGGCGATTGTGCAGTTATTGCTGGAACACGGTGCCAGCCCGCATCTGACCGATAAATATGGCAAAACGCCACTGGAACTGGCGCGGGAACGGGGCTTTGAAGAGATTGCGCAGTTACTGATTGCCGCAGGTGCATAAACCGGGAGGCTTGCTATCAACACACCAGAAAGACGGTGTG yahO yahO yahOp 346432 forward yahO(346484,346759) yahO(346484,346759) 346432-346759 346432-346484 AACCCAATAATGTGGGTGGGTGATAGTGTGATAACAACTCTGGAGCCGTAATA prpR prpR prpRp 348471 reverse prpR(346857,348443) prpR(346857,348443) 346857-348471 348443-348471 ATTCGGTTTCTTAACTTTGCGGTGCGCTA prpBCDE prpBCDE prpBp 348646 forward prpB(348682,349572) prpE(352706,354592) 348646-354592 348646-348682 CAACGCAAATAACAAGTTGATAACAAAGGATGGGCTA codBA codBA codBp 354884 forward codB(354922,356181) codA(356171,357454) 354884-357454 354884-354922 GATTTTTTGGGTTTCAAACAGCAAAAAGGGGGAATTTCG cynR cynR cynRp 358709 reverse cynR(357791,358690) cynR(357791,358690) 357791-358709 358690-358709 ATTTACTTATAGGTTGCGAA cynTSX cynTSX cynTp 358773 forward cynT(358799,359458) cynX(359992,361146) rho-independent(361212,361236) 358773-361236 358773-358799 ATTCCAGAGACAGACAGAGGTTAACGG 361146-361236 ATGCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGC cynTSX cynTS cynTp 358773 forward cynT(358799,359458) cynS(359489,359959) rho-independent(360253,360278) 358773-360278 358773-358799 ATTCCAGAGACAGACAGAGGTTAACGG 359959-360278 ACAGCCATGCGCAACCATCAAAAGACGTTCACGATGCTGCTGGTACTGGTGCTGATTGGTCTTAATATGCGACCACTGCTCACCTCCGTCGGGCCACTGCTACCGCAATTGCGCCAGGCGAGCGGAATGAGCTTTAGCGTGGCTGCCCTGTTGACCGCTCTGCCGGTGGTTACCATGGGCGGGCTGGCGCTGGCCGGAAGCTGGCTTCATCAGCATGTCAGCGAACGTCGCAGTGTCGCCATCAGTCTGTTGCTGATTGCCGTCGGTGCATTGATGCGTGAGCTTTACCCGCAAAGTGCGCTGCTGCTTAGCAGCGCACT lacZYA lacZYA lacZp1 366343 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361212,361236) 361212-366343 366305-366343 AATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361212-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGC lacZYA lacZYA lacZp1 366343 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361140,361179) 361140-366343 366305-366343 AATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361140-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCC lacZYA lacZYA lacZp3 366358 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361212,361236) 361212-366358 366305-366358 TCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361212-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGC lacZYA lacZYA lacZp3 366358 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361140,361179) 361140-366358 366305-366358 TCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361140-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCC lacZYA lacZYA lacZp2 366365 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361212,361236) 361212-366365 366305-366365 TTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361212-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGC lacZYA lacZYA lacZp2 366365 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361140,361179) 361140-366365 366305-366365 TTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361140-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCC lacZYA lacZYA lacZp4 366377 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361212,361236) 361212-366377 366305-366377 TACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361212-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGC lacZYA lacZYA lacZp4 366377 reverse lacZ(363231,366305) lacA(361249,361860) rho-independent(361140,361179) 361140-366377 366305-366377 TACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTA 361140-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCC mhpR-lacI lacI lacIp 367538 reverse lacI(366428,367510) lacI(366428,367510) 366428-367538 367510-367538 GGAAGAGAGTCAATTCAGGGTGGTGAATG mhpABCDFE mhpABCDFE mhpAp 368519 forward mhpA(368611,370275) mhpE(373868,374881) 368519-374881 368519-368611 CACAATAAAAAATCATTTACATGTTTTTAACAAAATAAGTTGCGCTGTACTGTGCGCGCAACGACATTTTGTCCGAGTCGTGAGGTACTGAAA mhpR-lacI mhpR-lacI mhpRp2 368528 reverse mhpR(367587,368420) lacI(366428,367510) 366428-368528 368420-368528 TTTTATTGTGCGCTCAGTATAGGAAGGGTGTTTTCGGCTACAATCAAAACATGCCCGAATGTGCACCAGGTGCACCACGTTGTTTTAACTATAGAAATGTCAATTAATA mhpR-lacI mhpR-lacI mhpRp1 368536 reverse mhpR(367587,368420) lacI(366428,367510) 366428-368536 368420-368536 AAATGATTTTTTATTGTGCGCTCAGTATAGGAAGGGTGTTTTCGGCTACAATCAAAACATGCCCGAATGTGCACCAGGTGCACCACGTTGTTTTAACTATAGAAATGTCAATTAATA mhpT mhpT mhpTp 375386 forward mhpT(375459,376670) mhpT(375459,376670) 375386-376670 375386-375459 TTAAATAGTTCTGATTACGCGGCTGGCAATGTATCAGTCGCGATTCACCTGCACTCGCAACGAGGTTCATCTTA tauABCD tauABCD tauAp 385205 forward tauA(385232,386194) tauD(387795,388646) 385205-388646 385205-385232 CATAACAAGACAGGGGAGCAGACAATCA hemB hemB hemBp 389754 reverse hemB(388753,389727) hemB(388753,389727) 388753-389754 389727-389754 CTCGATTCCACAAACATCAGGCAGACCA ampH ampH ampHp2 396319 reverse ampH(395130,396287) ampH(395130,396287) 395130-396319 396287-396319 AGTTACCTTCATTCAATCTATGGACACCACCGT ampH ampH ampHp1 396363 reverse ampH(395130,396287) ampH(395130,396287) 395130-396363 396287-396363 AATTCGCCCTTTGCAATCTATCAATGAGTAGTATAAATACGCTCAGTTACCTTCATTCAATCTATGGACACCACCGT sbmA-yaiW sbmA-yaiW sbmAp 396553 forward sbmA(396639,397859) yaiW(397872,398966) 396553-398966 396553-396639 CGGTTTCATTTGGCTGACGCTTTGTAGCGGTCATGCGGTTAATACACAGCAGTTGTTAAAACGATAAGAAGTTAGCAGGAGTGCATA yaiZ yaiZ yaiZp 399454 forward yaiZ(399593,399805) yaiZ(399593,399805) 399454-399805 399454-399593 CCGAAGCGTGAATCTTCGTTGTGAGTCACAAAATGGCAACCTTAAGTTAAATTTATTAACAATTACGAAAATGTTGTCTACACCACAGACGGTTGTTGCAGAATATGCAAGGATGTTGTTTTTCGTTAACGGAGCTGCCA iraP iraP iraPp1 401319 forward iraP(401386,401646) iraP(401386,401646) 401319-401646 401319-401386 TCCAGACACTATGAAGTTGTGAAACATAATGTTAACTTCTCCATACTTTGGATAAGGAAATACAGACA iraP iraP iraPp2 401363 forward iraP(401386,401646) iraP(401386,401646) 401363-401646 401363-401386 ACTTTGGATAAGGAAATACAGACA phoA-psiF phoA-psiF phoAp 401707 forward phoA(401747,403162) psiF(403281,403601) 401707-403601 401707-401747 GTTTTTATTTTTTAATGTATTTGTACATGGAGAAAATAAAG phoA-psiF psiF psiFp 403231 forward psiF(403281,403601) psiF(403281,403601) 403231-403601 403231-403281 AGATCACGGGCGCATACGCTCATGGTTAAAACATGAAGAGGGATGGTGCTA dgcC adrA adrAp 403687 forward dgcC(403703,404818) dgcC(403703,404818) 403687-404818 403687-403703 GGAAAATTGTTTCTGAA proC proC proCp 405686 reverse proC(404835,405644) proC(404835,405644) rho-independent(404786,404824) 404786-405686 405644-405686 AGCGATTATCAAAACAATGAATTTCACGGCAGGAGTGAGGCAA 404786-404835 ATGACTTTCGCCGGACGTCAGGCCGCCACTTCGGTGCGGTTACGTCCGGC aroL-yaiA-aroM aroL-yaiA-aroM aroLp1 406280 forward aroL(406405,406929) aroM(407428,408105) 406280-408105 406280-406405 ATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGA aroL-yaiA-aroM aroL-yaiA-aroM aroLp2 406355 forward aroL(406405,406929) aroM(407428,408105) 406355-408105 406355-406405 CTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACGA aroL-yaiA-aroM aroM aroMp 407400 forward aroM(407428,408105) aroM(407428,408105) 407400-408105 407400-407428 GACGAAAGAAAAGTAAGGTGGATGAACAA ppnP ppnP ppnPp 408148 forward ppnP(408177,408461) ppnP(408177,408461) 408148-408461 408148-408177 GATGTTCAACTACCAAACAGGGCCAGTTTA ykiA ykiA ykiAp 408574 forward ykiA(408609,408950) ykiA(408609,408950) 408574-408950 408574-408609 ATCAAGGTTGATATAAATATCAGTGAAGATCTCCAG araJ araJ araJp 412529 reverse araJ(411297,412481) araJ(411297,412481) 411297-412529 412481-412529 TTATTGGCTACGGTGATTGGTAGCCGTTCTGGTGGTTGTGATGGTGGTA sbcDC sbcDC sbcDp 416977 reverse sbcD(415750,416952) sbcC(412607,415753) 412607-416977 416952-416977 CATGCTTTTTCGCCAGGGAACCGTTA phoBR phoBR phoBp 417101 forward phoB(417142,417831) phoR(417889,419184) rho-independent(419191,419245) 417101-419245 417101-417142 GCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCA 419184-419245 ATCCGCCTTTGTCATCTTTTATTGCCATAAGCCAGTCGATGCTGGCTTATTTTCTTTGCAGT brnQ-proY brnQ-proY brnQp 419488 forward brnQ(419591,420910) proY(420986,422359) 419488-422359 419488-419591 GAGTATTTCCCGCTAAAATTGTTTAAATATACCGCTGTATCATCCCCAGGGATTGGCACAAAAATTTAACGTTACAACACCACATCCACAGGCAGTATGATTTA malZ malZ malZp 422495 forward malZ(422518,424332) malZ(422518,424332) rho-independent(424486,424508) 422495-424508 422495-422518 ATTTTCATCACAGGGGAATTATGA 424332-424508 ACGTTTTATAACGCCTTGCGTGACGCCTGCGCCATCATCCGCGGATAAAACTGCCAGAAGCGGGTTTCGAGGGCGTCATAATGAGCGTCTAAATCGTACCAGGAGTCACGCAGGGCATCCAGACGTGGGCGGCGGCTTGCCATGCCGTTTAACACGTTCTGGATGAAATCCATATCG malZ malZ malZp 422495 forward malZ(422518,424332) malZ(422518,424332) rho-independent(424530,424553) 422495-424553 422495-422518 ATTTTCATCACAGGGGAATTATGA 424332-424553 ACGTTTTATAACGCCTTGCGTGACGCCTGCGCCATCATCCGCGGATAAAACTGCCAGAAGCGGGTTTCGAGGGCGTCATAATGAGCGTCTAAATCGTACCAGGAGTCACGCAGGGCATCCAGACGTGGGCGGCGGCTTGCCATGCCGTTTAACACGTTCTGGATGAAATCCATATCGCGATAGCGCACCAGCCACTGCTCTGACCACAAGTAATTGTTCAGA queA queA queAp 424985 forward queA(425011,426081) queA(425011,426081) 424985-426081 424985-425011 CTCTTATTTTAGTCTGAGTCAGTGTCA tgt-yajC-secDF tgt-yajC tgtp 426055 forward tgt(426137,427264) yajC(427287,427619) rho-independent(427756,427786) 426055-427786 426055-426137 GCAATTAATGAGCGCGTCGGGGAGTAATTCCGCGGCGCTGGTTTAAAACGTTGGACTGTTTTTCTGACGTAGTGGAGAAAAAA 427619-427786 ATTAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGA tgt-yajC-secDF yajC-secDF yajCp 427205 forward yajC(427287,427619) secF(429505,430476) 427205-430476 427205-427287 TTCGTAACTGATTTTTACCAGCGTCAGGGGCGAGAAGTACCACCTTTGAACGTTGATTAATATTAATAATGAGGGAAATTTAA tsx tsx tsxp2 432091 reverse tsx(431129,432013) tsx(431129,432013) rho-independent(431096,431122) 431096-432091 432013-432091 CTCTGTATACGAAATATTTAGAAACGCAATTTGCGCCTTTTTCACTCCCGCAAGGGATTTTCAAACAGTGGCATACATA 431096-431129 ATTATGAAAATGCCGGGATTTATTCCCGGCATTT tsx tsx tsxp1 432245 reverse tsx(431129,432013) tsx(431129,432013) rho-independent(431096,431122) 431096-432245 432013-432245 ATCACCTGGATTGATAGTAAAAGTTTGCAACAAGGGCGAAAGTCAGTACAATCCCCGCCCGAATGTGTGTAAACGTGAACGCAATCGATTACGTAAATGATAGAACTGTGAAACGAAACATATTTTTGTGAGCAATGATTTTTATAATAGGCTCCTCTGTATACGAAATATTTAGAAACGCAATTTGCGCCTTTTTCACTCCCGCAAGGGATTTTCAAACAGTGGCATACATA 431096-431129 ATTATGAAAATGCCGGGATTTATTCCCGGCATTT nrdR-ribDE-nusB-thiL-pgpA nrdR-ribDE-nusB-thiL-pgpA nrdRp 432977 forward nrdR(433002,433451) pgpA(436589,437107) 432977-437107 432977-433002 GTTAACCACCTGGTCAGGACGCCGTA nrdR-ribDE-nusB-thiL-pgpA ribE-nusB-thiL-pgpA ribEp 434504 forward ribE(434647,435117) pgpA(436589,437107) 434504-437107 434504-434647 CAAAGAGATACGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAACCCGAAGGAAGAAAA xseB-ispA-dxs-yajO xseB-ispA-dxs-yajO xseBp 441373 reverse xseB(441101,441343) yajO(437161,438135) 437161-441373 441343-441373 GCGAAAAATATTGAGAGTCAGACATTCATTA thiI thiI thiIp 441468 forward thiI(441549,442997) thiI(441549,442997) 441468-442997 441468-441549 CCTGGATGCAGCCGCAGGTGTGGGCTGCTGTATTTTTCCCTATACAAGTCGCTTAAGGCTTGCCAACGAACCATTGCCGCCA yajQ yajQ yajQp 444658 forward yajQ(444683,445174) yajQ(444683,445174) 444658-445174 444658-444683 ATCAAAAATGAAGGGAGAGGAAAAGA yajR yajR yajRp 446687 reverse yajR(445302,446666) yajR(445302,446666) 445302-446687 446666-446687 GAATTTAAAACAGAGGTGGTAA cyoABCDE cyoABCDE cyoAp 451653 reverse cyoA(450663,451610) cyoE(446815,447705) 446815-451653 451610-451653 ACACTTTAAACGCCACCAGATCCCGTGGAATTGAGGTCGTTAAA yajG-ampG yajG yajGp 454210 reverse yajG(453589,454167) yajG(453589,454167) rho-independent(453557,453576) 453557-454210 454167-454210 GAATTTTTACCAAACACGCTTAAGAGTCTCTGAGAGCCCGAACA 453557-453589 ATTTCTGCCCTCTGGCCCGGTGCAAGCCGGGCC yajG-ampG yajG-ampG yajGp 454210 reverse yajG(453589,454167) ampG(452070,453545) 452070-454210 454167-454210 GAATTTTTACCAAACACGCTTAAGAGTCTCTGAGAGCCCGAACA bolA bolA bolAp2 454349 forward bolA(454472,454789) bolA(454472,454789) rho-independent(454844,454865) 454349-454865 454349-454472 ACGCTTGACGGAAAAACCAGGACGAAACCTAAATATTTGTTGTTAAGCTGCAATGGAAACGGTAAAAGCGGCTAGTATTTAAAGGGATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCA 454789-454865 AAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTT bolA bolA bolAp1 454434 forward bolA(454472,454789) bolA(454472,454789) rho-independent(454844,454865) 454434-454865 454434-454472 GATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCA 454789-454865 AAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTT bolA bolA bolAp 454434 forward bolA(454472,454789) bolA(454472,454789) rho-independent(454844,454865) 454434-454865 454434-454472 GATGGATGACATCTCAGCGTTGTCGGAGGAGATATTTCA 454789-454865 AAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTT tig tig tigp1 454993 forward tig(455133,456431) tig(455133,456431) 454993-456431 454993-455133 GTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGA tig tig tigp2 455122 forward tig(455133,456431) tig(455133,456431) 455122-456431 455122-455133 GAGGTAACAAGA clpPX-lon clpPX clpPp1 456577 forward clpP(456677,457300) clpX(457426,458700) rho-independent(458731,458755) 456577-458755 456577-456677 ATGGTGATGCCGTACCCATAACACAGGGACTAGCTGATAATCCGTCCATAAGGTTACAATCGGTACAGCAGGTTTTTTCAATTTTATCCAGGAGACGGAAA 458700-458755 ATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTT clpPX-lon clpPX clpPp3 456605 forward clpP(456677,457300) clpX(457426,458700) rho-independent(458731,458755) 456605-458755 456605-456677 ACTAGCTGATAATCCGTCCATAAGGTTACAATCGGTACAGCAGGTTTTTTCAATTTTATCCAGGAGACGGAAA 458700-458755 ATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTT clpPX-lon clpPX clpPp2 456646 forward clpP(456677,457300) clpX(457426,458700) rho-independent(458731,458755) 456646-458755 456646-456677 AGGTTTTTTCAATTTTATCCAGGAGACGGAAA 458700-458755 ATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTT clpPX-lon clpX-lon clpXp 457202 forward clpX(457426,458700) lon(458888,461242) 457202-461242 457202-457426 GAACAGATTGAACGTGATACCGAGCGCGATCGCTTCCTTTCCGCCCCTGAAGCGGTGGAATACGGTCTGGTCGATTCGATTCTGACCCATCGTAATTGATGCCAGAGGCGCAACTGTGCCGCTATACTTATCCAGGGCGGCACAACGCTGTAAGCGGCTTGCGCCTGAGAATGGCATTTGCGTCGTCGTGTGCGGCACAAAGAACAAAGAAGAGGTTTTGACCCA clpPX-lon lon lonp 458815 forward lon(458888,461242) lon(458888,461242) 458815-461242 458815-458888 ATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTA clpPX-lon lon lonp2 458815 forward lon(458888,461242) lon(458888,461242) 458815-461242 458815-458888 ATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTA hupB hupB hupBp4 461305 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461730,461742) 461305-461742 461305-461451 TTTTTTTGTCTCGCTAAGTTAGATGGCGGATCGGGCTTGCCCTTATTAAGGGGTGTTGTAAGGGGATGGCTGGCCTGATATAACTGCTGCGCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAG 461723-461742 AGCGTTGTCCCCAGTGGGGA hupB hupB hupBp4 461305 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461759,461778) 461305-461778 461305-461451 TTTTTTTGTCTCGCTAAGTTAGATGGCGGATCGGGCTTGCCCTTATTAAGGGGTGTTGTAAGGGGATGGCTGGCCTGATATAACTGCTGCGCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAG 461723-461778 AGCGTTGTCCCCAGTGGGGATGTGACGAAGTTCAAGGGCGCATCTACTGATGTGCC hupB hupB hupBp3 461332 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461730,461742) 461332-461742 461332-461451 GGATCGGGCTTGCCCTTATTAAGGGGTGTTGTAAGGGGATGGCTGGCCTGATATAACTGCTGCGCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAG 461723-461742 AGCGTTGTCCCCAGTGGGGA hupB hupB hupBp3 461332 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461759,461778) 461332-461778 461332-461451 GGATCGGGCTTGCCCTTATTAAGGGGTGTTGTAAGGGGATGGCTGGCCTGATATAACTGCTGCGCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAG 461723-461778 AGCGTTGTCCCCAGTGGGGATGTGACGAAGTTCAAGGGCGCATCTACTGATGTGCC hupB hupB hupBp2 461395 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461730,461742) 461395-461742 461395-461451 GCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAG 461723-461742 AGCGTTGTCCCCAGTGGGGA hupB hupB hupBp2 461395 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461759,461778) 461395-461778 461395-461451 GCGTTCGTACCTTGAAGGATTCAAGTGCGATATAAATTATAAAGAGGAAGAGAAGAG 461723-461778 AGCGTTGTCCCCAGTGGGGATGTGACGAAGTTCAAGGGCGCATCTACTGATGTGCC hupB hupB hupBp1 461442 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461730,461742) 461442-461742 461442-461451 AAGAGAAGAG 461723-461742 AGCGTTGTCCCCAGTGGGGA hupB hupB hupBp1 461442 forward hupB(461451,461723) hupB(461451,461723) rho-independent(461759,461778) 461442-461778 461442-461451 AAGAGAAGAG 461723-461778 AGCGTTGTCCCCAGTGGGGATGTGACGAAGTTCAAGGGCGCATCTACTGATGTGCC ppiD ppiD ppiDp2 461819 forward ppiD(461915,463786) ppiD(461915,463786) 461819-463786 461819-461915 TGACAATTGCCCCCGTTTCTTGTCACAATAGGCCTTTGCGCGCATCGATACGTTGCGTGAGGTACACAGTCATCTACAGCGGAGTGTTGTTACACCA ppiD ppiD ppiDp1 461838 forward ppiD(461915,463786) ppiD(461915,463786) 461838-463786 461838-461915 TTGTCACAATAGGCCTTTGCGCGCATCGATACGTTGCGTGAGGTACACAGTCATCTACAGCGGAGTGTTGTTACACCA fadM fadM fadMp1 464360 forward fadM(464402,464800) fadM(464402,464800) 464360-464800 464360-464402 ATGACCTCTGTACTTATAACAACAACGTAAGGTTATTGCGCTA decR decR decRp 468352 forward decR(468383,468841) decR(468383,468841) 468352-468841 468352-468383 AAAAGAGAAAAAAATTCTCTGTGGAAGGGCTA glnK-amtB glnK-amtB glnKp 472556 forward glnK(472598,472936) amtB(472966,474252) rho-independent(474263,474301) 472556-474301 472556-472598 CGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTA 474252-474301 ACAAGCACTGCAAAAAACAGCCGGACGGTTTTCACCTCCGGCTATTTTTT tesB tesB tesBp 475201 reverse tesB(474301,475161) tesB(474301,475161) 474301-475201 475161-475201 ACTTTGGCTTGCTGCGGCAGCTTTGTTACTGGAGAGTTATA ylaC ylaC ylaCp 479288 reverse ylaC(478781,479251) ylaC(478781,479251) 478781-479288 479251-479288 GTTCCCTGGAAAGTTGCAGATACCACGAAGGCAAACGA tomB-hha tomB-hha tomBp 480794 reverse tomB(480334,480708) hha(480090,480308) 480090-480794 480708-480794 ACAAACGAGAGGGCAAGTCCAGGTCAGTAAGTTTTTTCCATCCCGAAAGGTGTCCGTTAGTTCAACCGCTAAGAAGGGGACGCGTTA acrAB acrB acrBp 484685 reverse acrB(481254,484403) acrB(481254,484403) 481254-484685 484403-484685 GCGTAACCCGTACGCCGCGTGGCGATGCCACCGTACTGGTAGTTGGCGCGGATGACAAAGTGGAAACCCGTCCGATCGTTGCAAGCCAGGCTATTGGCGATAAGTGGCTGGTGACAGAAGGTCTGAAAGCAGGCGATCGCGTAGTAATAAGTGGGCTGCAGAAAGTGCGTCCTGGTGTCCAGGTAAAAGCACAAGAAGTTACCGCTGATAATAACCAGCAAGCCGCAAGCGGTGCTCAGCCTGAACAGTCCAAGTCTTAACTTAAACAGGAGCCGTTAAGACA acrAB acrAB acrAp 485698 reverse acrA(484426,485619) acrB(481254,484403) 481254-485698 485619-485698 ACGATAATATAAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTCGAGGTTTACATA acrR acrR acrRp 485699 forward acrR(485761,486408) acrR(485761,486408) 485699-486408 485699-485761 CGTGCTATGGTACATACATTCACAAATGTATGTAAATCTAACGCCTGTAAATTCACGAACATA mscK mscK mscKp 486492 forward mscK(486536,489898) mscK(486536,489898) 486492-489898 486492-486536 GACTTTTTCAGGTCGTTCTTCAGGTTCAGAAACCTTCATTCATCA apt apt aptp 491310 forward apt(491412,491963) apt(491412,491963) 491310-491963 491310-491412 GTTTTCGAGCACAGGCGCAGGCGGTCAAAGGTTAAACAACTGTTACTTTTGATACGTTTAAAACGCGCCGTGAGTACCACCGTAACAAGCAGGCATACACTTA dnaX dnaX dnaXp 492056 forward dnaX(492092,494023) dnaX(492092,494023) 492056-494023 492056-492092 TCGTGAATCCACCTTCCAGCGTTTCAGAGCCTGCCAA ybaB-recR ybaB-recR ybaBp 493709 forward ybaB(494076,494405) recR(494405,495010) 493709-495010 493709-494076 GCGTTAAATGCCTGGAAAGAGGAGAGCGACAACGCAGTATGTCTGCATTTGCGCTCCTCTCAGCGGCATTTGAACAACCGCGGTGCACAGCAAAAACTGGCTGAAGCGTTGAGCATGTTAAAAGGTTCAACGGTTGAACTGACTATCGTTGAAGATGATAATCCCGCGGTGCGTACGCCGCTGGAGTGGCGTCAGGCGATATACGAAGAAAAACTTGCGCAGGCGCGCGAGTCCATTATTGCGGATAATAATATTCAGACCCTGCGTCGGTTCTTCGATGCGGAGCTGGATGAAGAAAGTATCCGCCCCATTTGATCGTAAGCACAGCTTACGTTCGTCATCCTTAACGTGATTGAGAGAGAAACCTA htpG htpG htpGp3 494817 forward htpG(495120,496994) htpG(495120,496994) 494817-496994 494817-495120 CTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTTTGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCACCACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAAGCAAACGAGAGCAGGATCACCTGCTCTCGCTTGAAATTATTCTCCCTTGTCCCCATCTCTCCCACATCCTGTTTTTAACCTTAAAATGGCATTATTGAGGTAGACCTACA htpG htpG htpGp1 495075 forward htpG(495120,496994) htpG(495120,496994) rho-independent(496998,497029) 495075-497029 495075-495120 CATCCTGTTTTTAACCTTAAAATGGCATTATTGAGGTAGACCTACA 496994-497029 ATGTAATGCCGGATGACCTTCGTGTCATCCGGCATT htpG htpG htpGp2 495084 forward htpG(495120,496994) htpG(495120,496994) rho-independent(496998,497029) 495084-497029 495084-495120 TTTAACCTTAAAATGGCATTATTGAGGTAGACCTACA 496994-497029 ATGTAATGCCGGATGACCTTCGTGTCATCCGGCATT adk adk adkp 497139 forward adk(497175,497819) adk(497175,497819) 497139-497819 497139-497175 TCAAAAAATTCGACACATTTTAAGGGGATTTTCGCAA hemH hemH hemHp 498031 forward hemH(498055,499017) hemH(498055,499017) 498031-499017 498031-498055 AAGTTGAATCGATAAGAGGCGGTAA gsk gsk gskp 500015 forward gsk(500125,501429) gsk(500125,501429) 500015-501429 500015-500125 GCCATGAAAATGCGATCCCGCCTGCTGATATTGAAACTGGCTGCGTCTCGCGCGCTCCCGTCAGATTGTGTTAACATTCGCCGCTCAGTTAACCACCCGTAAAAACAACCA aes aes aesp 500051 reverse aes(499014,499973) aes(499014,499973) rho-independent(498945,498980) 498945-500051 499973-500051 GTTTCAATATCAGCAGGCGGGATCGCATTTTCATGGCAGTGGTTCCTTACAATGACGTAATTTGAAAGGAGTTTTTGTA 498945-499014 GCGATACGCGGCAACAAGATTAGCCATCATTTCGATATGTTCCGGCGTGGCATTAAGCGCCGGAATATAT ybaL ybaL ybaLp 503295 reverse ybaL(501562,503238) ybaL(501562,503238) 501562-503295 503238-503295 GTAATTTTGGTTTTCCCGGCCAAAAATGGACAATAACCACCAGGAAAAGGAGACGGAA chiX chiX chiXp 507204 forward chiX(507204,507287) chiX(507204,507287) rho-independent(507260,507287) 507204-507287 507204-507204 A ybaQ ybaQ ybaQp 508191 forward ybaQ(508218,508559) ybaQ(508218,508559) 508191-508559 508191-508218 TTCACAAGGAAGCAACAGTTAAAAACCA copA copA copAp 511411 reverse copA(508875,511379) copA(508875,511379) 508875-511411 511379-511411 AGCCAGTCAAAACTGTCTTAAAGGAGTGTTTTA glsA-ybaT glsA-ybaT glsAp 511573 forward glsA(511641,512573) ybaT(512576,513868) 511573-513868 511573-511641 GGATGCCTGAAAATCGGCACCGGGGTGAGGAATTACCTCCCGCATCTATAAAAAGGAGTTAACAAAAGA qmcA-ybbJ qmcA-ybbJ qmcAp 515823 reverse qmcA(514856,515773) ybbJ(514401,514859) 514401-515823 515773-515823 TCAAGCAGCAATTTTGCTGATTATGGACGGTACAACAGGAGGTTTTTCCGA fetAB fetAB fetAp 515903 forward fetA(515919,516596) fetB(516583,517362) 515903-517362 515903-515919 GAAAAAGGGAACAGCGA cnoX ybbN ybbNp1 518490 reverse cnoX(517425,518279) cnoX(517425,518279) 517425-518490 518279-518490 GGGACCGGAAGCGGTGGTGGACAAAGTACGCCATGCTTTTATTAGCGAGAAGCCGAAGATGCGCTATCCGGTGACGCTGGTGACCTGGGCGGTAATGGTGCTTAAGCGCCTGCTGCCGGGGCGCGTGATGGACAAAATATTGCAGGGGTGAGTTGAAGCGCGCGCTTAAGCCCCCATGTCAAAGAAAATATCGACAACAGAGAGCGACTCCA tesA-ybbO tesA-ybbO tesAp 519949 reverse tesA(519139,519765) ybbO(518340,519149) 518340-519949 519765-519949 GTTGTCCCACCAGACTCACTTCGCCACTGCTGCCGTCATCAAGCCCGGCGAGGATCGCCAGCAAGGTTGACTTACCCGATCCCGACTCGCCCACCAGTGCGATGGTCTCGCCACGTTTGACAACCAGCTCAACTCCGGTGAGGATGGAGAGTTCATGCTCCCCCTGACCGACGGACTTCTTAAGA allS allS allSp 532300 reverse allS(531295,532221) allS(531295,532221) 531295-532300 532221-532300 GGTTATCATGTAAAAATACTGATAAATCAGAGGATAAGAAAATCACGCAACTTGCGGATTTAAAAGGGGATACCTGAAGA allA allA allAp 532390 forward allA(532451,532933) allA(532451,532933) 532390-532933 532390-532451 ATTGAAACCAAGCTGACCGGTCGGCGGTGGTTGAACGGAATTATGTTACAAGGACAAAAAGA gcl-hyi-glxR-ybbW-allB-ybbY-glxK gcl-hyi-glxR-ybbVW-allB-ybbY-glxK gclp 533907 forward gcl(533916,535697) glxK(541888,543033) 533907-543033 533907-533916 AGGAATAAAA gcl-hyi-glxR-ybbW-allB-ybbY-glxK allB allBp3 538944 forward allB(539147,540508) allB(539147,540508) 538944-540508 538944-539147 CTTGGCGGTAAGTTTATTCACTTTATGGAACCGTTATCGCGTGTTTCATGGTTTGTCGGCGTCATCGTCGCCTTTGCGGCCTACGCCTTATTAAAGAAACGTACAACAGCAGAAAAAACAGGAGAGCAAAAAACCATAGGTTAATTAATCCCGATATTGAACATTGAGTTAAAAACCAATCTGTATTTTACAAGGAGTTTGTTA gcl-hyi-glxR-ybbW-allB-ybbY-glxK allB allBp2 538986 forward allB(539147,540508) allB(539147,540508) 538986-540508 538986-539147 GTTTCATGGTTTGTCGGCGTCATCGTCGCCTTTGCGGCCTACGCCTTATTAAAGAAACGTACAACAGCAGAAAAAACAGGAGAGCAAAAAACCATAGGTTAATTAATCCCGATATTGAACATTGAGTTAAAAACCAATCTGTATTTTACAAGGAGTTTGTTA gcl-hyi-glxR-ybbW-allB-ybbY-glxK allB allBp1 539041 forward allB(539147,540508) allB(539147,540508) 539041-540508 539041-539147 AACGTACAACAGCAGAAAAAACAGGAGAGCAAAAAACCATAGGTTAATTAATCCCGATATTGAACATTGAGTTAAAAACCAATCTGTATTTTACAAGGAGTTTGTTA gcl-hyi-glxR-ybbW-allB-ybbY-glxK ybbY-glxK ybbYp 540359 forward ybbY(540565,541866) glxK(541888,543033) 540359-543033 540359-540565 GAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCGGTTAAGGTGTGTTTA allDCE allDC-ylbA allDp 546411 reverse allD(545314,546363) allE(543261,544046) 543261-546411 546363-546411 TATGTTAATTGCAGTCATGCTTCACACCGTCGTTAAAAAGGAAGACAGA purEK purEK purEp 553142 reverse purE(552591,553100) purK(551527,552594) 551527-553142 553100-553142 CTCTAAAGCCGAGAGTTGTGCACCACAGGAGTTTTAAGACGCA cysS cysS cysSp 554577 forward cysS(554611,555996) cysS(554611,555996) 554577-555996 554577-554611 TCAATTACCCACACATGTCTAAACGGAATCTTCGA folD-ybcJ folD-ybcJ folDp 557781 reverse folD(556875,557741) ybcJ(556661,556873) 556661-557781 557741-557781 ATCCCCTTCGATCTACGTAACAGATGGAATCCTCTCTCTGA argU argU argUp 564703 forward argU(564723,564799) argU(564723,564799) 564703-564799 564703-564723 CACCGCATTGCGGTATCAACG nmpC nmpC nmpCp 576870 (564723,564799) (564723,564799) - essD-rrrD-rzpD essD-ybcS-rzpD essDp 576873 forward essD(577398,577613) rzpD(578107,578568) 576873-578568 576873-577398 GATAAATATTCATCTAATCAATGTGATTATTTCAAGATGTAAGTTTTGGTTTCTCGTTTGATTTGTGAAGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTA borD borD borDp 578921 reverse borD(578600,578893) borD(578600,578893) 578600-578921 578893-578921 AACTTCAAAAAGCATCGGGAATAACACCA appY appY appYp1 583567 forward appY(583681,584430) appY(583681,584430) 583567-584430 583567-583681 ACTATAATTTTGTGTATAAAAATATAAATGCACATCATCCTGATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTTTATGATAGGTGCAAGA appY appY appYp3 583580 forward appY(583681,584430) appY(583681,584430) 583580-584430 583580-583681 GTATAAAAATATAAATGCACATCATCCTGATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTTTATGATAGGTGCAAGA appY appY appYp2 583656 forward appY(583681,584430) appY(583681,584430) 583656-584430 583656-583681 GTTTTAATTTTATGATAGGTGCAAGA envY-ompT ompT ompTp 585665 reverse ompT(584680,585633) ompT(584680,585633) 584680-585665 585633-585665 CAATCATTAAAACGATTGAATGGAGAACTTTTA cusRS cusRS cusRp 595462 reverse cusR(594760,595443) cusS(593328,594770) 593328-595462 595443-595462 GGCAACATGCGGAGGAAATA cusCFBA cusCFBA cusCp 595573 forward cusC(595600,596973) cusA(598714,601857) 595573-601857 595573-595600 CATAAAATCACCAGAAATTATGAGCCTA pheP pheP phePp 601929 forward pheP(601959,603335) pheP(601959,603335) rho-independent(603377,603409) 601929-603409 601929-601959 CTCAACAAAAAAGACACACAGGGGAAAGGCG 603335-603409 AGGCATTCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCCATTCGATGAGAGCGGTTT nfsB nfsB nfsBp 605453 reverse nfsB(604771,605424) nfsB(604771,605424) 604771-605453 605424-605453 ACGCAAAATTACTTTCACATGGAGTCTTTA hokE hokE hokEp 607731 forward hokE(607836,607988) hokE(607836,607988) 607731-607988 607731-607836 GGAAAGATGAAGCCCCAGGAGATATTTCTATCAACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCTTCGCATGGAGGCAATATAAACA fepA-entD fepA-entD fepAp 612667 reverse fepA(610254,612494) entD(609459,610079) 609459-612667 612494-612667 CTATTTGCATTTGCAATAGCGTAATGGCGCGCCGTGGGAAGCGCGGACATTAATTAACCAACTGCACTGCGTGTCTTTCAGGATCAAAGGTTTTCGCGGTAGCGGGATGCGTCGTGTTGATGACGACCATGCCCGACAGTTGCAATTCGTGGCAAAAATGCAGGAATAAAACAA fes-ybdZ-entF-fepE fes-ybdZ-entF-fepE fesp 612687 forward fes(612737,613939) fepE(618254,619387) 612687-619387 612687-612737 TATATTTCTGCAATCAATGAAAAATTGCACAGTAAACATGGGGTTATGGTG fepDGC fepDGC fepDp2 622192 reverse fepD(621185,622189) fepC(619384,620199) 619384-622192 622189-622192 CGTA fepDGC fepDGC fepDp1 622234 reverse fepD(621185,622189) fepC(619384,620199) 619384-622234 622189-622234 ATAAGATCGATAACGATAATTAATTTCATTATCATGGAAGTTCGTA entS entS entSp2 622253 forward entS(622300,623550) entS(622300,623550) 622253-623550 622253-622300 GCAGCCTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAA entS entS entSp1 622258 forward entS(622300,623550) entS(622300,623550) 622258-623550 622258-622300 CTAAGAATAGGTATTTAAAATATTTGATGGCAAGGCATTGTAA fepB fepB fepBp 624727 reverse fepB(623554,624510) fepB(623554,624510) 623554-624727 624510-624727 ATTATTGATGGATTCGCATAAGCGCAATGTGATGTCCTGCGCCGTTCTGCCCCCTCTCCCTTCCAGGGTGAGGGCTGGGGTGAGGGTTAATGTTCGCACCAGTGCTGGCTGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACGGATTGTGCGCTTTGTCGAATTTGTCATTACGCCCTTAACCTTATTAATAACAGGAAGCTGATTTG entCEBAH entCEBA-ybdB entCp 624831 forward entC(624885,626060) entH(629300,629713) 624831-629713 624831-624885 GAAAATATAAATGATAATCATTATTAAAGCCTTTATCATTTTGTGGAGGATGATA entCEBAH entH entHp 629292 forward entH(629300,629713) entH(629300,629713) 629292-629713 629292-629300 GCATAAGCA cstA cstA cstAp1 629855 forward cstA(629894,631999) cstA(629894,631999) rho-independent(632046,632091) 629855-632091 629855-629894 AATGTAACATCTCTATGGACACGCACACGGATAACAACTA 631999-632091 AAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT cstA cstA cstAp2 629864 forward cstA(629894,631999) cstA(629894,631999) rho-independent(632046,632091) 629864-632091 629864-629894 TCTCTATGGACACGCACACGGATAACAACTA 631999-632091 AAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT cstA cstA cstAp3 629873 forward cstA(629894,631999) cstA(629894,631999) rho-independent(632046,632091) 629873-632091 629873-629894 ACACGCACACGGATAACAACTA 631999-632091 AAGTCAGAGTGAGGGGGGGATGTTGGCGAATGTTGGCTTAGTGCCCAGGGTTCCCTCTCACCCTAACCCTCTCCCCGGTGGGGCGAGGGGACT ybdN ybdN ybdNp 636686 reverse ybdN(635349,636569) ybdN(635349,636569) 635349-636686 636569-636686 TCATCTATTTATTCACAGCGCGAATGAAAAATAAAACACTCTGCTTTACAGTGTTTACTTTATAATTAACAGACTTATCTCACTGATCACCCTGTAACGTTCAGAGAGCGTCTTCAGA ahpCF ahpCF ahpCp2 638693 forward ahpC(638945,639508) ahpF(639753,641318) 638693-641318 638693-638945 GTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAAGATACCAAAGGGTAGTTCAGATTACACGGTCACCTGGAAAGGGGGCCATTTTACTTTTTATCGCCGCTGGCGGTGCAAAGTTCACAAAGTTGTCTTACGAAGGTTGTAAGGTAAAACTTATCGATTTGATAATGGAAACGCATTAGCCGAATCGGCAAAAATTGGTTACCTTACATCTCATCGAAAACACGGAGGAAGTATAGA dsbG dsbGp 638800 reverse dsbG(637827,638573) dsbG(637827,638573) 637827-638800 638573-638800 AAAAAGTAAAATGGCCCCCTTTCCAGGTGACCGTGTAATCTGAACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACATGGATTACAACACCCTCATAAACAAAGGGCAATCACCTGATCTAAGCTCTTACCTATGACAGTGATAGGTTATGCCTTTTACTCGACTTTTGCACTGACTGAAAAGGACAAATTAA ahpCF ahpCF ahpCp1 638921 forward ahpC(638945,639508) ahpF(639753,641318) 638921-641318 638921-638945 ATCGAAAACACGGAGGAAGTATAGA ahpCF ahpF ahpFp 639002 forward ahpF(639753,641318) ahpF(639753,641318) 639002-641318 639002-639753 GAATTCATCGAAATCACCGAAAAAGATACCGAAGGCCGCTGGAGCGTCTTCTTCTTCTACCCGGCTGACTTTACTTTCGTATGCCCGACCGAACTGGGTGACGTTGCTGACCACTACGAAGAACTGCAGAAACTGGGCGTAGACGTATACGCAGTATCTACCGATACTCACTTCACCCACAAAGCATGGCACAGCAGCTCTGAAACCATCGCTAAAATCAAATATGCGATGATCGGCGACCCGACTGGCGCCCTGACCCGTAACTTCGACAACATGCGTGAAGATGAAGGTCTGGCTGACCGTGCGACCTTCGTTGTTGACCCGCAGGGTATCATCCAGGCAATCGAAGTTACCGCTGAAGGCATTGGCCGTGACGCGTCTGACCTGCTGCGTAAAATCAAAGCAGCACAGTACGTAGCTTCTCACCCAGGTGAAGTTTGCCCGGCTAAATGGAAAGAAGGTGAAGCAACTCTGGCTCCGTCTCTGGACCTGGTTGGTAAAATCTAAATTTCCTTCGTCTTTCACGCCATAGCGGCGTTGGCGTCGCCCGCTCACCCCGGTCACTTACTTGTGTAAGCTCCCGGGGATTCACAGGCTAGCCGCCTTGCTCTGACGCGAAATACTTCGGAAATTCACCTAATTCTTCGGGTGCTGCGGCACCCGATTTTCTTCCCCGCACCATGATGCAAGCTGCATCCAGGTAGCCGCAGAGGCCGCTTGCATGATGATGTTTAAAGCCCAGGAGATAAACA uspG uspG uspGp 641903 reverse uspG(641439,641867) uspG(641439,641867) 641439-641903 641867-641903 GAATGATTTGTTCATGATTAACAGGGAGAAAGGGTTA rna rna rnap 645034 reverse rna(644197,645003) rna(644197,645003) 644197-645034 645003-645034 ATTCAGTGTATGTATGAGTTCCACACCCATTA citCDEFXG citCDEFXG citCp1 651952 reverse citC(650798,651856) citG(646631,647509) 646631-651952 651856-651952 TTCTCCCAAGTGAAAATAAAAGGTTATCAGTTTGCAACATTGAACAACATTCGTTGCAAATCGATAACAACATGCACCTTCAGGATACTATTTATTA dpiBA dpiBA dpiBp1 651984 forward dpiB(652235,653893) dpiA(653862,654542) 651984-654542 651984-652235 TTCGCTATACATCCTAAGGAGTATTTCGGCGTGAAATTTTGATTTATTTCACATAGAGTTAGTGGTTTTTTATTTATTTAATGATTTTAAGTTTTTTAATTAATGTAATTACGAAATGACTCGCAGGTTTAAGTGATTTAATTGATTTAATGAATAAAATTTGCCACGATCATAATTAATATCTATGTATTTTGATTCAACATTTTAATTACATCCGTCAAAGAGGCTCGGGACAACCCGCAAGGAAAACAA citCDEFXG citCDEFXG citCp2 652039 reverse citC(650798,651856) citG(646631,647509) 646631-652039 651856-652039 CTATGTGAAATAAATCAAAATTTCACGCCGAAATACTCCTTAGGATGTATAGCGAAAGGAGAAAAAGATATACCTCGATCACCCCCTTTCTCCCAAGTGAAAATAAAAGGTTATCAGTTTGCAACATTGAACAACATTCGTTGCAAATCGATAACAACATGCACCTTCAGGATACTATTTATTA dpiBA dpiBA dpiBp2 652172 forward dpiB(652235,653893) dpiA(653862,654542) 652172-654542 652172-652235 ATTTTGATTCAACATTTTAATTACATCCGTCAAAGAGGCTCGGGACAACCCGCAAGGAAAACAA dcuC dcuC dcuCp 656083 reverse dcuC(654583,655968) dcuC(654583,655968) 654583-656083 655968-656083 TGGCAGTTTTTCTTGATTTTAATCAGCATTCATCGCCAATTTATTGGGCATATTTTTTCCTTAAGCTTTAGGAATTTTTTATTATTTACTTTGGGGCCTGGAGACAGGAAAAATTA pagP pagP pagPp 656526 forward pagP(656557,657117) pagP(656557,657117) 656526-657117 656526-656557 TAGATTTTTGATAAATGTTTTATGGTCACAAA cspE cspE cspEp1 657147 forward cspE(657292,657501) cspE(657292,657501) 657147-657501 657147-657292 AATCAATAGCTAAAATAAGTAACATCAAAAATAACGCGACTTTTATCACTTTTTAGTAAAGTTACACTGGACAAAGCGTACCACAATTGGTGTACTGGTAACCGACACAGCATTTGTGTCTATTTTTCATGTAAAGGTAATTTTGA cspE cspE cspEp2 657250 forward cspE(657292,657501) cspE(657292,657501) 657250-657501 657250-657292 GACACAGCATTTGTGTCTATTTTTCATGTAAAGGTAATTTTGA lipA lipA lipAp 660301 reverse lipA(659251,660216) lipA(659251,660216) 659251-660301 660216-660301 GTTAATTCAAAAATAGTTGATAATTACAACAATCTATTGAATTGAAACGCTTTCCTTCGTAATTCGCAACTGGAACACGCACGCTA ybeD-lipB ybeD-lipB ybeDp 662706 reverse ybeD(662379,662642) lipB(661637,662278) 661637-662706 662642-662706 ATCAGTAAAAAACTCCCGCCTTCTGGCGGGAGTTGCTATTTAATTACGTTACGCCGGAGCTGACA ybeD-lipB ybeD-lipB ybeDp2 662706 reverse ybeD(662379,662642) lipB(661637,662278) 661637-662706 662642-662706 ATCAGTAAAAAACTCCCGCCTTCTGGCGGGAGTTGCTATTTAATTACGTTACGCCGGAGCTGACA rsfS-rlmH-mrdAB-rlpA rsfS-rlmH-mrdAB-rlpA rsfSp 669072 reverse rsfS(668719,669036) rlpA(664102,665190) 664102-669072 669036-669072 CCATTTTTATCTATTTGATTCACCCAGGGGGAAAACT ybeL ybeL ybeLp 674993 forward ybeL(675018,675500) ybeL(675018,675500) 674993-675500 674993-675018 AGTTAACGACCCGGGAGATGAAACGA gltI-sroC-gltJKL gltIJKL-sroC gltIp1 687896 reverse gltI(686839,687747) gltL(684530,685255) 684530-687896 687747-687896 TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACAGGCACAACACTGCACAATAAAGTTGCAGACGATAACAACACAAACACTCACAACGGGTATCCATGCGTTCTTAACGCAGAAGATAAAGGAGTTGGATA ybeZYX-lnt ybeZYX-lnt ybeZp 693469 reverse ybeZ(692338,693378) lnt(689343,690881) 689343-693469 693378-693469 AATGCTTGCGCCTTTTTCCTGTGGCGTGAATAATTTCCTTATAGGCCGGTGAATGTTCAGCTTCCGGCGGCATACAGATAAGAGGAACGGTT metT-leuW-glnUW-metU-glnVX metT-leuW-glnUW-metU-glnVX metTp 697163 reverse metT(697057,697133) glnX(696430,696504) rho-independent(696392,696429) 696392-697163 697133-697163 ACGCCGATAAGGTATCGCGAAAAAAAAGATG 696392-696430 ACATTAAAAAAGCTCGCTTCGGCGAGCTTTTTGCTTTTC asnB asnB asnBp 699222 reverse asnB(697513,699177) asnB(697513,699177) 697513-699222 699177-699222 AAGCAAACACAACAAGCAACAAATACCAGGTTAACGGAGAAGGTTA nagBAC-umpH umpH umpHp 700352 reverse umpH(699574,700326) umpH(699574,700326) 699574-700352 700326-700352 ATTGTTGTCAATATTCTGGGTAGTCCA nagBAC-umpH nagC nagCp1 701865 reverse nagC(700374,701594) nagC(700374,701594) 700374-701865 701594-701865 ACGGACTTTGTGTGGATGAGAACGGTACGTTAAGCGGTTCATCCTTAACCATGATTGAAGGCGTGCGTAATCTGGTCGAACATTGCGGTATCGCACTGGATGAAGTGCTACGTATGGCGACGCTCTATCCGGCGCGTGCGATTGGCGTTGAGAAACGTCTCGGCACACTCGCCGCAGGTAAAGTAGCCAACCTGACTGCATTCACACCTGATTTTAAAATCACCAAGACCATCGTTAACGGTAACGAGGTCGTAACTCAATAAGAGAAAGTA nagBAC-umpH nagC nagCp2 702008 reverse nagC(700374,701594) nagC(700374,701594) 700374-702008 701594-702008 TGGCCTGCATGTTGATTACGCCAACATTCGCAACGCTAAACGTCTGAAAGGCGACAAACTGTGTCTGGTTACTGACGCCACCGCGCCAGCAGGTGCCAACATTGAACAGTTCATTTTTGCGGGTAAAACAATATACTACCGTAACGGACTTTGTGTGGATGAGAACGGTACGTTAAGCGGTTCATCCTTAACCATGATTGAAGGCGTGCGTAATCTGGTCGAACATTGCGGTATCGCACTGGATGAAGTGCTACGTATGGCGACGCTCTATCCGGCGCGTGCGATTGGCGTTGAGAAACGTCTCGGCACACTCGCCGCAGGTAAAGTAGCCAACCTGACTGCATTCACACCTGATTTTAAAATCACCAAGACCATCGTTAACGGTAACGAGGTCGTAACTCAATAAGAGAAAGTA nagBAC-umpH nagA nagAp 703175 reverse nagA(701603,702751) nagA(701603,702751) 701603-703175 702751-703175 TTAACGAACCGGCGTCTTCTCTGGCTTCTCGTACTCGTATCAAAACCCTGACTCATGACACTCGCGTCGCAAACTCTCGTTTCTTTGATAACGATGTTAATCAGGTGCCAAAATATGCCCTGACTGTCGGTGTTGGTACACTGCTGGATGCCGAAGAAGTGATGATTCTGGTGCTGGGTAGCCAGAAAGCACTGGCGCTGCAGGCCGCCGTTGAAGGTTGCGTGAACCATATGTGGACCATCAGCTGTCTGCAACTGCATCCGAAAGCGATCATGGTGTGCGATGAACCTTCCACCATGGAGCTGAAAGTTAAGACTTTAAGATATTTCAATGAATTAGAAGCAGAAAATATCAAAGGTCTGTAATTGTTATCCCTGCCCTGGCTCCTTGCTCAGGGCAATATTTTTTAAAATCGGGGGTCAGAA nagBAC-umpH nagBACD nagBp 703708 reverse nagB(702811,703611) umpH(699574,700326) 699574-703708 703611-703708 AAATCAGGTCGGATTGACGCCTGTCTGCGCAAATCCAGGTTACGCTTAAAGATGCCTAATCCGCCAACGGCTTACATTTTACTTATTGAGGTGAATAA nagE nagE nagEp 703840 forward nagE(703944,705890) nagE(703944,705890) rho-independent(705939,705965) 703840-705965 703840-703944 AGATGATCTAACAATCTGATTACAGAACATCGGCAGTACAATTTGCAGCAAAATAAAAATACGGCTTGAAACGAGCCAAATAGGGTTCTCGTAGGGGGAATAAGA 705890-705965 ATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAACAATGACAAGCGGTGGAGATCTTCTCTGCCGCTT glnS glnS glnSp2 705999 forward glnS(706093,707757) glnS(706093,707757) rho-independent(707954,707978) 705999-707978 705999-706093 AGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTTATAAGATCATACGCCGTTATACGTTGTTTACGCTTTGAGGAATCCACGA 707757-707978 ATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTT glnS glnS glnSp 705999 forward glnS(706093,707757) glnS(706093,707757) rho-independent(707954,707978) 705999-707978 705999-706093 AGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTTATAAGATCATACGCCGTTATACGTTGTTTACGCTTTGAGGAATCCACGA 707757-707978 ATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTT glnS glnS glnSp1 706060 forward glnS(706093,707757) glnS(706093,707757) rho-independent(707954,707978) 706060-707978 706060-706093 GTTATACGTTGTTTACGCTTTGAGGAATCCACGA 707757-707978 ATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTT chiZPQ chiZPQ chiZp 708236 forward chiZ(708236,708333) chiQ(709790,710116) 708236-710116 708236-708236 G fldA-uof-fur fur furpa 710716 reverse fur(710200,710646) fur(710200,710646) rho-independent(710118,710134) 710118-710716 710646-710716 ATTATCTCAAGAGCAAATTCTGTCACTTCTTCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCA 710118-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCTTTTTTATGCAAGGGAAATAAGAAAAGCGAGAGTTACAGCTCTCA fldA-uof-fur fur furpa 710716 reverse fur(710200,710646) fur(710200,710646) rho-independent(710162,710180) 710162-710716 710646-710716 ATTATCTCAAGAGCAAATTCTGTCACTTCTTCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCA 710162-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCT fldA-uof-fur fur furpb 710723 reverse fur(710200,710646) fur(710200,710646) rho-independent(710118,710134) 710118-710723 710646-710723 GATACGCATTATCTCAAGAGCAAATTCTGTCACTTCTTCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCA 710118-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCTTTTTTATGCAAGGGAAATAAGAAAAGCGAGAGTTACAGCTCTCA fldA-uof-fur fur furpb 710723 reverse fur(710200,710646) fur(710200,710646) rho-independent(710162,710180) 710162-710723 710646-710723 GATACGCATTATCTCAAGAGCAAATTCTGTCACTTCTTCTAATGAAGTGAACCGCTTAGTAACAGGACAGATTCCGCA 710162-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCT fldA-uof-fur uof-fur uofp 710829 reverse uof(710639,710725) fur(710200,710646) rho-independent(710118,710134) 710118-710829 710725-710829 GGTGTTCAAGTGGCCTTGCCGTTGTAAATGTAAGCTGTGCCACGTTTTTATTAACAATATTTGCCAGGGACTTGTGGTTTTCATTTAGGCGTGGCAATTCTATAA 710118-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCTTTTTTATGCAAGGGAAATAAGAAAAGCGAGAGTTACAGCTCTCA fldA-uof-fur uof-fur uofp 710829 reverse uof(710639,710725) fur(710200,710646) rho-independent(710162,710180) 710162-710829 710725-710829 GGTGTTCAAGTGGCCTTGCCGTTGTAAATGTAAGCTGTGCCACGTTTTTATTAACAATATTTGCCAGGGACTTGTGGTTTTCATTTAGGCGTGGCAATTCTATAA 710162-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCT fldA-uof-fur fldA-uof-fur fldAp 711521 reverse fldA(710935,711465) fur(710200,710646) rho-independent(710118,710134) 710118-711521 711465-711521 ATCCGTGGGCAATTTTCCACCCCCATTTCAATAAGTTTCAAGAGGTTATTTCACTCA 710118-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCTTTTTTATGCAAGGGAAATAAGAAAAGCGAGAGTTACAGCTCTCA fldA-uof-fur fldA-uof-fur fldAp 711521 reverse fldA(710935,711465) fur(710200,710646) rho-independent(710162,710180) 710162-711521 711465-711521 ATCCGTGGGCAATTTTCCACCCCCATTTCAATAAGTTTCAAGAGGTTATTTCACTCA 710162-710200 AGCCAGCCTGAACGAGAAAAGCCAACCTGCGGGTTGGCT ybfE ybfE ybfEp 711939 reverse ybfE(711605,711898) ybfE(711605,711898) 711605-711939 711898-711939 CAGAGGCCTGGCTGATTGTTTCCCCCGAAGTCACCAAGATCA seqA-pgm seqA-pgm seqAp 712942 forward seqA(712987,713532) pgm(713558,715198) rho-independent(715211,715242) 712942-715242 712942-712987 ACTCCTGGCGACTTGTATTCAGCTAAGACACTGCACTGGATTAAGA 715198-715242 AACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTT ybfG ybfHG ybfHp 716641 reverse ybfG(715947,716597) ybfG(715947,716597) 715947-716641 716597-716641 TCCTCATCATAAATGACACCGTAGCACACAAGGAGCAAGTAGCGA kdpFABC kdpFABC kdpFp 728849 reverse kdpF(728732,728821) kdpC(724407,724979) 724407-728849 728821-728849 ATCACTTTTAGGCCACTGGAGGTGCACTG ybgA-phr ybgA-phr ybgAp2 738920 forward ybgA(739001,739510) phr(739507,740925) 738920-740925 738920-739001 GTCCTGCTACAACAGGATTAACTTCACAAATATCATTTCTCAACGTCTACACTTACTCCTGTAAACCGCTCAGGAGCAGTAA ybgA-phr ybgA-phr ybgAp1 738980 forward ybgA(739001,739510) phr(739507,740925) 738980-740925 738980-739001 GTAAACCGCTCAGGAGCAGTAA ybgA-phr phr phrp 739421 forward phr(739507,740925) phr(739507,740925) 739421-740925 739421-739507 GCGCTTTATCCTGACGCCTGGCTTTCAGGGCAGCGTTATTTCGAACTTTGGCCGCGTGTGATTAACTTGCGCCATTCAGGAGTTTTA ybgI-pxpBCA-nei ybgIJKL-nei ybgIp1 742619 forward ybgI(742827,743570) nei(745935,746726) 742619-746726 742619-742827 AAGTTAAAACTTTGATACAGATCTGATTATTTATGCAATATGCTGTCTGATTGCATAAATATACATTAGCTGAAGCGTGATGATATAAACAATTTGCGTCTTTTGGCGTCGGGTTTGTTTCTTAATATGTCAAAAGATTGGCTATCGACGAACTGGCGAGGTAACGCTATGTTAACGGTGTAGCTATCAGAATACGGAAGGCGCGAAGA ybgI-pxpBCA-nei ybgIJKL-nei ybgIp2 742798 forward ybgI(742827,743570) nei(745935,746726) 742798-746726 742798-742827 GTAGCTATCAGAATACGGAAGGCGCGAAGA ybgI-pxpBCA-nei nei neip 745904 forward nei(745935,746726) nei(745935,746726) 745904-746726 745904-745935 GATTAATAAAGAATGAAAAAAGGATATCACCA gltA gltA gltAp2 754670 reverse gltA(753185,754468) gltA(753185,754468) rho-independent(753126,753163) 753126-754670 754468-754670 TTCGGATTGCTAAGTACTTGATTCGCCATTTATTCGTCATCAATGGATCCTTTACCTGCAAGCGCCCAGAGCTCTGTACCCAGGTTTTCCCCTCTTTCACAGAGCGGCGAGCCAAATAAAAAACGGGTAAAGCCAGGTTGATGTGCGAAGGCAAATTTAAGTTCCGGCAGTCTTACGCAATAAGGCGCTAAGGAGACCTTAAA 753126-753185 ATGGTTGATTGCTAAGTTGTAAATATTTTAACCCGCCGTTCATATGGCGGGTTGATTTTT gltA gltA gltAp1 754767 reverse gltA(753185,754468) gltA(753185,754468) rho-independent(753126,753163) 753126-754767 754468-754767 TGAAGTCGGTATTTCACCTAAGATTAACTTATGTAACAGTGTGGAAGTATTGACCAATTCATTCGGGACAGTTATTAGTGGTAGACAAGTTTAATAATTCGGATTGCTAAGTACTTGATTCGCCATTTATTCGTCATCAATGGATCCTTTACCTGCAAGCGCCCAGAGCTCTGTACCCAGGTTTTCCCCTCTTTCACAGAGCGGCGAGCCAAATAAAAAACGGGTAAAGCCAGGTTGATGTGCGAAGGCAAATTTAAGTTCCGGCAGTCTTACGCAATAAGGCGCTAAGGAGACCTTAAA 753126-753185 ATGGTTGATTGCTAAGTTGTAAATATTTTAACCCGCCGTTCATATGGCGGGTTGATTTTT sdhCDAB-sucABCD-sdhX sdhCDAB-sucABCD-sdhX sdhCp 754958 forward sdhC(755177,755566) sdhX(765050,765150) 754958-765150 754958-755177 TCTCCGGAACACCCTGCAATCCCGAGCCACCCAGCGTTGTAACGTGTCGTTTTCGCATCTGGAAGCAGTGTTTTGCATGACGCGCAGTTATAGAAAGGACGCTGTCTGACCCGCAAGCAGACCGGAGGAAGGAAATCCCGACGTCTCCAGGTAACAGAAAGTTAACCTCTGTGCCCGTAGTCCCCAGGGAATAATAAGAACAGCATGTGGGCGTTATTCA sdhCDAB-sucABCD-sdhX sdhDAB sdhDp 755404 forward sdhD(755560,755907) sdhB(757689,758405) rho-dependent(758444,758450) 755404-758450 755404-755560 CATCCTTACCGCTCTGGCGTATCACGTCGTCGTAGGTATTCGCCACATGATGATGGATTTTGGCTATCTGGAAGAAACATTCGAAGCGGGTAAACGCTCCGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTA 758405-758450 AACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAG sdhCDAB-sucABCD-sdhX sucABCD-sdhX sucAp 758586 forward sucA(758706,761507) sdhX(765050,765150) 758586-765150 758586-758706 AGGTTCCTTCGCGAGCCACTACGTAGACAAGAGCTCGCAAGTGAACCCCGGCACGCACATCACTGTGCGTGGTAGTATCCACGGCGAAGTAAGCATAAAAAAGATGCTTAAGGGATCACGA sdhCDAB-sucABCD-sdhX sucAB sucAp 758586 forward sucA(758706,761507) sucB(761522,762739) rho-dependent(762959,762966) 758586-762966 758586-758706 AGGTTCCTTCGCGAGCCACTACGTAGACAAGAGCTCGCAAGTGAACCCCGGCACGCACATCACTGTGCGTGGTAGTATCCACGGCGAAGTAAGCATAAAAAAGATGCTTAAGGGATCACGA 762739-762966 GTAGTTTAAGTTTCACCTGCACTGTAGACCGGATAAGGCATTATCGCCTTCTCCGGCAATTGAAGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGACCACCAATGTAGGTCGGATAAGGCGCAAGCGCCGCATCCGACAAGCGATGCCTGATGTGACGTTTAACGTGTCTTATCAGGCCTACGGGTGACCGACAATGCCCGGAAGCGATACGAAATATTC mngAB mngAB mngAp 765811 forward mngA(765984,767960) mngB(767978,770611) 765811-770611 765811-765984 TCGCCACGCGCAATTTGTTCACGAATGCGATCGGCAATCTGCCGGTATAAGGGCTTGTGTCCCATTTTTAGTATCTCATTAATACGAATTTAACCATTATGCCCGATAAATTCATCCTGTAAATAATACAAATACAATACAAATAATTTCAATCAAGTGAAATTGATCACATAA mngR mngR mngRp 765926 reverse mngR(765153,765875) mngR(765153,765875) rho-independent(765104,765158) 765104-765926 765875-765926 GATGAATTTATCGGGCATAATGGTTAAATTCGTATTAATGAGATACTAAAAA 765104-765153 AGCACAAAAAAGGCCATCATACGATGGCCAACCATGTCGAAACCGACAGC mngAB mngB mngBp2 767795 forward mngB(767978,770611) mngB(767978,770611) 767795-770611 767795-767978 CTCGCTCTTTTTACTTCATGATAATGGCGCGGGCGGTGTTATGGCGGCAATTGGCTGGTTTGGCGCGGCATTGGTGGGGGCTGCAATCTCGACTGCAATTCTCCTGATGTGGCGGCGTCACGCGGTTAAGCATGGCAACTATCTGACTGATGGCGTAATGCCATAAACAAAAAGGAAACGACGA mngAB mngB mngBp1 767825 forward mngB(767978,770611) mngB(767978,770611) 767825-770611 767825-767978 GGGCGGTGTTATGGCGGCAATTGGCTGGTTTGGCGCGGCATTGGTGGGGGCTGCAATCTCGACTGCAATTCTCCTGATGTGGCGGCGTCACGCGGTTAAGCATGGCAACTATCTGACTGATGGCGTAATGCCATAAACAAAAAGGAAACGACGA cydAB cydAB cydAp1 771170 forward cydA(771458,773026) cydB(773042,774181) 771170-774181 771170-771458 GATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGCATTCACATGGTATGATGAAAGTGTTCAAACAAATTTCTATTGGGGCATGCGTGTGACCCTTTCTAACGGGGTTCACTCTCGGAGTCTTCATGCGATGAGCAAGGAGTCATGA cydAB cydAB cydAp3 771202 forward cydA(771458,773026) cydB(773042,774181) 771202-774181 771202-771458 ATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGCATTCACATGGTATGATGAAAGTGTTCAAACAAATTTCTATTGGGGCATGCGTGTGACCCTTTCTAACGGGGTTCACTCTCGGAGTCTTCATGCGATGAGCAAGGAGTCATGA cydAB cydAB cydAp4 771213 forward cydA(771458,773026) cydB(773042,774181) 771213-774181 771213-771458 ACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATTGTAAGGATTTTGCGGCGTAATATATACGTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGCATTCACATGGTATGATGAAAGTGTTCAAACAAATTTCTATTGGGGCATGCGTGTGACCCTTTCTAACGGGGTTCACTCTCGGAGTCTTCATGCGATGAGCAAGGAGTCATGA cydAB cydAB cydAp2 771284 forward cydA(771458,773026) cydB(773042,774181) 771284-774181 771284-771458 GTGGGATCAATTTGAGTTTTTATTAACATGTTTGCAACCTTTCTTTACGCCGTTTTTGTGTGCATTCACATGGTATGATGAAAGTGTTCAAACAAATTTCTATTGGGGCATGCGTGTGACCCTTTCTAACGGGGTTCACTCTCGGAGTCTTCATGCGATGAGCAAGGAGTCATGA cydAB cydAB cydAp5 771368 forward cydA(771458,773026) cydB(773042,774181) 771368-774181 771368-771458 TGTTCAAACAAATTTCTATTGGGGCATGCGTGTGACCCTTTCTAACGGGGTTCACTCTCGGAGTCTTCATGCGATGAGCAAGGAGTCATGA lysT-valT-lysW lysT-valT-lysW lysTp 780514 forward lysT(780554,780629) lysW(780843,780918) 780514-780918 780514-780554 TGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTG nadA-pnuC nadAp 782061 forward nadA(782085,783128) pnuC(783166,783885) 782061-783885 782061-782085 AAGCCTGTAAAACGAGATGGTAAGA aroG aroG aroGp 785591 forward aroG(785633,786685) aroG(785633,786685) rho-independent(786795,786821) 785591-786821 785591-785633 TATTGCATTCACTAAGATAAGTATGGCAACACTGGAACAGACA 786685-786821 AGGTTTAATTGTCGGATGCGCCGTCAGAGTGGCGTATCCGATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGCTCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTT gpmA gpmA gpmAp 787632 reverse gpmA(786843,787595) gpmA(786843,787595) 786843-787632 787595-787632 ATTATTATCATTAAAAGATGATTTGAGGAGTAAGTATA gpmA gpmA gpmAp4 787632 reverse gpmA(786843,787595) gpmA(786843,787595) 786843-787632 787595-787632 ATTATTATCATTAAAAGATGATTTGAGGAGTAAGTATA gpmA gpmA gpmAp2 787670 reverse gpmA(786843,787595) gpmA(786843,787595) 786843-787670 787595-787670 AAGCATTGCTGTTGCTTCGTCGCGGCAATATAATGAGAATTATTATCATTAAAAGATGATTTGAGGAGTAAGTATA gpmA gpmA gpmAp3 787670 reverse gpmA(786843,787595) gpmA(786843,787595) 786843-787670 787595-787670 AAGCATTGCTGTTGCTTCGTCGCGGCAATATAATGAGAATTATTATCATTAAAAGATGATTTGAGGAGTAAGTATA galETKM galK galKp 790463 reverse galK(788831,789979) galK(788831,789979) 788831-790463 789979-790463 TTTTGCCGAACAGAAATCACCAATGCTGGTGGATTATGTTCAGCGCGAGCTGGCAGACGGTAGCCGTACCGTTGTCGAAACCGAACACTGGTTAGCCGTCGTGCCTTACTGGGCTGCCTGGCCGTTCGAAACGCTACTGCTGCCCAAAGCCCACGTTTTACGGATCACCGATTTGACCGACGCCCAGCGCAGCGATCTGGCGCTGGCGTTGAAAAAGCTGACCAGTCGTTATGACAACCTCTTCCAGTGCTCCTTCCCCTACTCTATGGGCTGGCACGGCGCGCCATTTAATGGCGAAGAGAATCAACACTGGCAGCTGCACGCGCACTTTTATCCGCCTCTGCTGCGCTCCGCCACCGTACGTAAATTTATGGTTGGTTATGAAATGCTGGCAGAGACCCAGCGAGACCTGACCGCAGAACAGGCAGCAGAGCGTTTGCGCGCAGTCAGCGATATCCATTTTCGCGAATCCGGAGTGTAAGAAA galETKM galETKM galEp1 792081 reverse galE(791039,792055) galM(787797,788837) rho-dependent(787763,787768) 787763-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 787763-787797 ATGTTACGCCCTCGTCATGAGGGCTTTATCTCATA galETKM galETKM galEp1 792081 reverse galE(791039,792055) galM(787797,788837) rho-dependent(787689,787766) 787689-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 787689-787797 ATGTTACGCCCTCGTCATGAGGGCTTTATCTCATATTGTTCAAATCACCAGCAAACACCGACATATTTGCAACTCAATATTCACAACAACCTTACACTGCGCCACTATT galETKM galE galEp1 792081 reverse galE(791039,792055) galE(791039,792055) rho-dependent(790823,790962) 790823-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 790823-791039 AGGAACGACCATGACGCAATTTAATCCCGTTGATCATCCACATCGCCGCTACAACCCGCTCACCGGGCAATGGATTCTGGTTTCACCGCACCGCGCTAAGCGCCCCTGGCAGGGGGCGCAGGAAACGCCAGCCAAACAGGTGTTACCTGCGCACGATCCAGATTGCTTCCTCTGCGCAGGTAATGTGCGGGTGACAGGCGATAAAAACCCCGATTAC galETKM galE galEp1 792081 reverse galE(791039,792055) galE(791039,792055) rho-dependent(790312,790425) 790312-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 790312-791039 AGGAACGACCATGACGCAATTTAATCCCGTTGATCATCCACATCGCCGCTACAACCCGCTCACCGGGCAATGGATTCTGGTTTCACCGCACCGCGCTAAGCGCCCCTGGCAGGGGGCGCAGGAAACGCCAGCCAAACAGGTGTTACCTGCGCACGATCCAGATTGCTTCCTCTGCGCAGGTAATGTGCGGGTGACAGGCGATAAAAACCCCGATTACACCGGGACTTACGTTTTCACTAATGACTTTGCGGCTTTGATGTCTGACACGCCAGATGCGCCAGAAAGTCACGATCCGCTGATGCGTTGCCAGAGCGCGCGCGGCACCAGCCGGGTGATCTGCTTTTCACCGGATCACAGTAAAACGCTGCCAGAGCTCAGCGTTGCAGCATTGACGGAAATCGTCAAAACCTGGCAGGAGCAAACCGCAGAACTGGGGAAAACGTACCCATGGGTGCAGGTTTTTGAAAACAAAGGCGCGGCGATGGGCTGCTCTAACCCGCATCCGCACGGTCAGATTTGGGCAAATAGCTTCCTGCCTAACGAAGCTGAGCGCGAAGACCGCCTGCAAAAAGAATATTTTGCCGAACAGAAATCACCAATGCTGGTGGATTATGTTCAGCGCGAGCTGGCAGACGGTAGCCGTACCGTTGTCGAAACCGAACACTGGTTAGCCGTCGTGCCTTACTGGGCTGCCTGGCCGTTCGAAACGCTACTGCTGCCCAAAGCCC galETKM galET galEp1 792081 reverse galE(791039,792055) galT(789983,791029) rho-dependent(789840,789918) 789840-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 789840-789983 AGAAATGAGTCTGAAAGAAAAAACACAATCTCTGTTTGCCAACGCATTTGGCTACCCTGCCACTCACACCATTCAGGCGCCTGGCCGCGTGAATTTGATTGGTGAACACACCGACTACAACGACGGTTTCGTTCTGCCCTGCGC galETKM galET galEp1 792081 reverse galE(791039,792055) galT(789983,791029) rho-dependent(789952,789977) 789952-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 789952-789983 AGAAATGAGTCTGAAAGAAAAAACACAATCTC galETKM galETK galEp1 792081 reverse galE(791039,792055) galK(788831,789979) rho-dependent(788615,788741) 788615-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 788615-788831 AACGAAACTCCCGCACTGGCACCCGATGGTCAGCCGTACCGACTGTTAACTTTGCGTAACAACGCAGGGATGGTAGTCACGCTGATGGACTGGGGTGCGACTTTACTTTCCGCCCGTATTCCGCTTTCCGATGGCAGCGTCCGCGAGGCGCTGCTCGGCTGTGCCAGCCCGGAATGCTATCAGGATCAGGCCGCGTTTCTGGGGGCCTCTATTGGTC galETKM galETK galEp 792081 reverse galE(791039,792055) galK(788831,789979) rho-dependent(788615,788741) 788615-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 788615-788831 AACGAAACTCCCGCACTGGCACCCGATGGTCAGCCGTACCGACTGTTAACTTTGCGTAACAACGCAGGGATGGTAGTCACGCTGATGGACTGGGGTGCGACTTTACTTTCCGCCCGTATTCCGCTTTCCGATGGCAGCGTCCGCGAGGCGCTGCTCGGCTGTGCCAGCCCGGAATGCTATCAGGATCAGGCCGCGTTTCTGGGGGCCTCTATTGGTC galETKM galET galEp 792081 reverse galE(791039,792055) galT(789983,791029) rho-dependent(789840,789918) 789840-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 789840-789983 AGAAATGAGTCTGAAAGAAAAAACACAATCTCTGTTTGCCAACGCATTTGGCTACCCTGCCACTCACACCATTCAGGCGCCTGGCCGCGTGAATTTGATTGGTGAACACACCGACTACAACGACGGTTTCGTTCTGCCCTGCGC galETKM galET galEp 792081 reverse galE(791039,792055) galT(789983,791029) rho-dependent(789952,789977) 789952-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 789952-789983 AGAAATGAGTCTGAAAGAAAAAACACAATCTC galETKM galE galEp 792081 reverse galE(791039,792055) galE(791039,792055) rho-dependent(790823,790962) 790823-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 790823-791039 AGGAACGACCATGACGCAATTTAATCCCGTTGATCATCCACATCGCCGCTACAACCCGCTCACCGGGCAATGGATTCTGGTTTCACCGCACCGCGCTAAGCGCCCCTGGCAGGGGGCGCAGGAAACGCCAGCCAAACAGGTGTTACCTGCGCACGATCCAGATTGCTTCCTCTGCGCAGGTAATGTGCGGGTGACAGGCGATAAAAACCCCGATTAC galETKM galE galEp 792081 reverse galE(791039,792055) galE(791039,792055) rho-dependent(790312,790425) 790312-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 790312-791039 AGGAACGACCATGACGCAATTTAATCCCGTTGATCATCCACATCGCCGCTACAACCCGCTCACCGGGCAATGGATTCTGGTTTCACCGCACCGCGCTAAGCGCCCCTGGCAGGGGGCGCAGGAAACGCCAGCCAAACAGGTGTTACCTGCGCACGATCCAGATTGCTTCCTCTGCGCAGGTAATGTGCGGGTGACAGGCGATAAAAACCCCGATTACACCGGGACTTACGTTTTCACTAATGACTTTGCGGCTTTGATGTCTGACACGCCAGATGCGCCAGAAAGTCACGATCCGCTGATGCGTTGCCAGAGCGCGCGCGGCACCAGCCGGGTGATCTGCTTTTCACCGGATCACAGTAAAACGCTGCCAGAGCTCAGCGTTGCAGCATTGACGGAAATCGTCAAAACCTGGCAGGAGCAAACCGCAGAACTGGGGAAAACGTACCCATGGGTGCAGGTTTTTGAAAACAAAGGCGCGGCGATGGGCTGCTCTAACCCGCATCCGCACGGTCAGATTTGGGCAAATAGCTTCCTGCCTAACGAAGCTGAGCGCGAAGACCGCCTGCAAAAAGAATATTTTGCCGAACAGAAATCACCAATGCTGGTGGATTATGTTCAGCGCGAGCTGGCAGACGGTAGCCGTACCGTTGTCGAAACCGAACACTGGTTAGCCGTCGTGCCTTACTGGGCTGCCTGGCCGTTCGAAACGCTACTGCTGCCCAAAGCCC galETKM galETKM galEp 792081 reverse galE(791039,792055) galM(787797,788837) rho-dependent(787763,787768) 787763-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 787763-787797 ATGTTACGCCCTCGTCATGAGGGCTTTATCTCATA galETKM galETKM galEp 792081 reverse galE(791039,792055) galM(787797,788837) rho-independent(787767,787790) 787767-792081 792055-792081 ATACCATAAGCCTAATGGAGCGAATTA 787767-787797 ATGTTACGCCCTCGTCATGAGGGCTTTATCT galETKM galETKM galEp2 792086 reverse galE(791039,792055) galM(787797,788837) rho-dependent(787689,787766) 787689-792086 792055-792086 ATTTCATACCATAAGCCTAATGGAGCGAATTA 787689-787797 ATGTTACGCCCTCGTCATGAGGGCTTTATCTCATATTGTTCAAATCACCAGCAAACACCGACATATTTGCAACTCAATATTCACAACAACCTTACACTGCGCCACTATT galETKM galE galEp2 792086 reverse galE(791039,792055) galE(791039,792055) 791039-792086 792055-792086 ATTTCATACCATAAGCCTAATGGAGCGAATTA galETKM galET galEp2 792086 reverse galE(791039,792055) galT(789983,791029) 789983-792086 792055-792086 ATTTCATACCATAAGCCTAATGGAGCGAATTA galETKM galETK galEp2 792086 reverse galE(791039,792055) galK(788831,789979) 788831-792086 792055-792086 ATTTCATACCATAAGCCTAATGGAGCGAATTA galETKM galETKM galEp3 792177 reverse galE(791039,792055) galM(787797,788837) 787797-792177 792055-792177 ATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTGTTATGCTATGGTTATTTCATACCATAAGCCTAATGGAGCGAATTA acrZ acrZ acrZp 794751 forward acrZ(794773,794922) acrZ(794773,794922) 794751-794922 794751-794773 ATGACTATATCTGGAGTTGACCA modABC modABC modAp1 794995 forward modA(795089,795862) modC(796554,797612) 794995-797612 794995-795089 TATCTACCTCACAAAGGTTAGCAATAACTGCTGGGAAAATTCCGAGTTAGTCGTTATATTGTCGCCTACATAACGTTACATTAAGGGGTTACCAA modABC modABC modAp2 795062 forward modA(795089,795862) modC(796554,797612) 795062-797612 795062-795089 ACATAACGTTACATTAAGGGGTTACCAA ybhC ybhC ybhCp 807321 reverse ybhC(805998,807281) ybhC(805998,807281) 805998-807321 807281-807321 CAACGGATTCATTTTTCTATTTCATAGCCCGGAGCAACCTG bioA bioA bioAp 809292 reverse bioA(807968,809257) bioA(807968,809257) 807968-809292 809257-809292 ACCTAAATCTTTTCAATTTGGTTTACAAGTCGATTA bioBFCD bioBFCD bioBp 809302 forward bioB(809344,810384) bioD(812270,812947) 809302-812947 809302-809344 TACACCGAATTAACAACAAAAAACACGTTTTGGAGAAGCCCCA uvrB uvrB uvrBp3 813152 forward uvrB(813526,815547) uvrB(813526,815547) 813152-815547 813152-813526 ACACGAGGCAAGCGAGAGAATACGCGGCTTGCACGCGAATTGGCGTTAAAGACGGCTCAAAGAAATATCTTTTATTTTTTAACTGGTTAGATAAATGCAATGGCAGTCACTGAACAGGCATCTCTTGCCATAAAACTGTCATCACTCATCTTGACAAATGTTAAAAAAGCCGTTGCTTTGGGGATAACCCGGTAAGGCCGGAGTTTTATCTCGCCACAGAGTAAATTTTGCTCATGATTGACAGCGGAGTTTACGCTGTATCAGAAATATTATGGTGATGAACTGTTTTTTTATCCAGTATAATTTGTTGGCATAATTAAGTACGACGAGTAAAATTACATACCTGCCCGCCCAACTCCTTCAGGTAGCGACTCA uvrB uvrB uvrBp2 813462 forward uvrB(813526,815547) uvrB(813526,815547) 813462-815547 813462-813526 GCATAATTAAGTACGACGAGTAAAATTACATACCTGCCCGCCCAACTCCTTCAGGTAGCGACTCA uvrB uvrB uvrBp1 813493 forward uvrB(813526,815547) uvrB(813526,815547) 813493-815547 813493-813526 ACCTGCCCGCCCAACTCCTTCAGGTAGCGACTCA moaABCDE moaABCDE moaAp1 816827 forward moaA(817044,818033) moaE(819295,819747) 816827-819747 816827-817044 GAAATAGCACGATCATGACGCTATATACATGATTACATAGCGAAAGTGTGGATGGTAAAAATCTCATTTACACGCTAGTATCGGCATAACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGTGCTTTGGCCGTGACAATGCTCGTAAAGATTGCCACCAGGGCGAAGGAAGAAATGACTTCGCCTCCCGTATCTGGAAAGGTGTACA moaABCDE moaABCDE moaAp2 816914 forward moaA(817044,818033) moaE(819295,819747) 816914-819747 816914-817044 AACCACTAAACACTCTAGCCTCTGCACCTGGGTCAACTGATACGGTGCTTTGGCCGTGACAATGCTCGTAAAGATTGCCACCAGGGCGAAGGAAGAAATGACTTCGCCTCCCGTATCTGGAAAGGTGTACA moaABCDE moaBCDE moaBp 817977 forward moaB(818055,818567) moaE(819295,819747) 817977-819747 817977-818055 TTCCTGCATCAAAACAACACCGGTATTACGCAAAACTTATCGTACATTGGCGGCTAAAACGTCAAAAGGAGAGATCAGA ybhL ybhL ybhLp 819858 forward ybhL(819884,820588) ybhL(819884,820588) 819858-820588 819858-819884 ATTCCTTATATCTTCAGGAGATCGTCA ybhQ ybhQ ybhQp 824601 forward ybhQ(824630,825040) ybhQ(824630,825040) 824601-825040 824601-824630 GTAGAGATAAATTCTTCAGGAGAGAAGCCA cecR-ybhGFSR cecR-ybhGFSR cecRp 830669 reverse cecR(829972,830643) ybhR(825002,826108) 825002-830669 830643-830669 TCATTTGATTAAGAATGGACTGTGCGA dinG-ybiB dinG-ybiB dinGp 833073 forward dinG(833070,835220) ybiB(835248,836210) 833073-836210 833073-833070 ybiI ybiI ybiIp6 838484 reverse ybiI(838190,838456) ybiI(838190,838456) 838190-838484 838456-838484 GTACAAGTATTGATATGGGGAGGTCGATA fiu fiu fiup 841648 reverse fiu(839249,841531) fiu(839249,841531) 839249-841648 841531-841648 CAAAATTATTATCACTTTCACGAGCACTATCACGGGATTAACAGTGGCATCGCATCCGCAGAGAGGCTTTCTCGTGGCAGTGAAAATTTCAACATATAAGAAAAAGTCACCTGCAAAA mcbA mcbA mcbAp5 842153 reverse mcbA(841796,842056) mcbA(841796,842056) 841796-842153 842056-842153 AAATAAGCACATCTCTGTCAATTTTTTGCGTCATTTGCATCGCGCAGGCGACCTACACTTATCAGGCACTACCCGTTGTATTTATGAGGATGTCATTA glnHPQ glnQ glnQp 846631 reverse glnQ(845741,846463) glnQ(845741,846463) 845741-846631 846463-846631 GCTGTTTATTGTGATCGGCGTGGCGGAACTGACCCGTCAGGGGCAAGAAATTATTGCCGGTAACTTCCGCGCCCTTGAGATCTGGAGCGCCGTGGCGGTGTTCTATCTGATTATTACCCTGGTGCTGAGCTTTATTCTGCGTCGTCTGGAAAGAAGGATGAAAATCCTG glnHPQ glnHPQ glnHp2 848047 reverse glnH(847258,848004) glnQ(845741,846463) 845741-848047 848004-848047 GTCACGCAGGGGATCGTCCCGTGGATAGAAAAAAGGAAATGCTA glnHPQ glnHPQ glnHp1 848198 reverse glnH(847258,848004) glnQ(845741,846463) 845741-848198 848004-848198 GTGTTGAGTGCACAATTTTAGCGCACCAGATTGGTGCCCCAGAATGGTGCATCTTCAGGGTATTGCCCTATAAATCGTGCATCACGTTTTTGCCGCATCTCGAAAAATCAAGGAGTTGCAAAACTGGCACGATTTTTTCATATATGTGAATGTCACGCAGGGGATCGTCCCGTGGATAGAAAAAAGGAAATGCTA dps dps dpsp 848950 reverse dps(848408,848911) dps(848408,848911) 848408-848950 848911-848950 GTTAATTACTGGGACATAACATCAAGAGGATATGAAATTA dps dps dpsp2 848950 reverse dps(848408,848911) dps(848408,848911) 848408-848950 848911-848950 GTTAATTACTGGGACATAACATCAAGAGGATATGAAATTA yliM-ompX yliM-ompX yliMp 850209 forward yliM(850332,850397) ompX(850450,850965) rho-independent(850982,851009) 850209-851009 850209-850332 CCAGGATTGATGGAATCATTAGTCTGGTGATTAGGAATAATCTGGATGAATGACAGGGAAAACATGCGTAATACTTACGCAGTTCTCTGAAAAAGTGATTTAAATTTAGATGGATAGCGGTGTA 850965-851009 ATCACTTTGGTGATATAAAAAATCCGCCTCTCGGGGCGGATTTTT yliM-ompX ompX ompXp2 850419 forward ompX(850450,850965) ompX(850450,850965) rho-independent(850982,851009) 850419-851009 850419-850450 AGGACTTATTTGAATCACATTTGAGGTGGTTA 850965-851009 ATCACTTTGGTGATATAAAAAATCCGCCTCTCGGGGCGGATTTTT rybA-mntS rybA-mntS rybAp 853064 reverse mntS(852869,852997) rybA(852725,853064) 852725-853064 852997-853064 GTGCTATATCTGTATGTAATGCAATCATCCCTCAAGGATCGACGGGATTAGCAAGTCAGGAGGTCTTA mntR-ybiR mntR-ybiR mntRp 853098 forward mntR(853183,853650) ybiR(853647,854765) 853098-854765 853098-853183 ATTTTTTGTACCTTCGCAACTCTGGTTTACAATGTGCGCACGAAATGAGAACGCTATGTATGCGTCACCATAATGAGGAAGCACAA ldtB ldtB ldtBp 855786 reverse ldtB(854824,855744) ldtB(854824,855744) 854824-855786 855744-855786 TTCTCAACCCAATGGCCTGCCAGGCACAAAATCTCGCTTAACA ybiT ybiT ybiTp 855947 forward ybiT(855963,857555) ybiT(855963,857555) 855947-857555 855947-855963 TTTTCAGGATACGCCTG moeAB moeAB moeAp 866394 reverse moeA(865129,866364) moeB(864380,865129) 864380-866394 866364-866394 ATTCGATTTTGCCTCCGCAGGAGTGTTTTCA iaaA-gsiABCD iaaA-gsiABCD iaaAp 866537 forward iaaA(866568,867533) gsiD(871890,872801) 866537-872801 866537-866568 AGTGGCGAACCACCCTTAATGGACGAATACTA rimO rimO rimOp 878070 reverse rimO(876710,878035) rimO(876710,878035) 876710-878070 878035-878070 CCTGACCTTTCCTGTAACTGAATATTTTTTAAGCTA gstB gstB gstBp 880519 reverse gstB(879854,880480) gstB(879854,880480) 879854-880519 880480-880519 CTGTTCAGCCTGTGGCTGCCTGTCGGAAAAGGGGTGAGTA dacC dacC dacCp 880653 forward dacC(880727,881929) dacC(880727,881929) 880653-881929 880653-880727 TGCGTTATTAATCACCAAACTTATCATACGGCGATATAACGTATTTTTTTTGAATGGATACTCGGGTGGCATTTA ybjG ybjG ybjGp 883508 reverse ybjG(882792,883388) ybjG(882792,883388) 882792-883508 883388-883508 ACCGTAAACAGGCCGCTTGAGGGAAATAAGACGATGCCGCTTTACCCAGTTTAACCTGCACTTTATTCTCAACGACTTGCCTGTATTGGCTCCCTTTTAATCACTTTGCGTCGGGAAGTTA mdfA cmr cmrp2 883569 forward mdfA(883673,884905) mdfA(883673,884905) rho-independent(884910,884938) 883569-884938 883569-883673 TAATGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTAAACTCTGCGCGATTATTATTGGCGAAGAAATTGCA 884905-884938 AAAAAATGCCTGACTGCTTTGTGCGATCAGGCAT mdfA cmr cmrp1 883649 forward mdfA(883673,884905) mdfA(883673,884905) rho-independent(884910,884938) 883649-884938 883649-883673 GATTATTATTGGCGAAGAAATTGCA 884905-884938 AAAAAATGCCTGACTGCTTTGTGCGATCAGGCAT rybB rybB rybBp 888057 reverse rybB(887979,888057) rybB(887979,888057) 887979-888057 888057-888057 G grxA grxA grxAp 890776 reverse grxA(890496,890753) grxA(890496,890753) 890496-890776 890753-890776 ATAAATCTATGAGGAGAGAAATAA ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN ybjCp 890892 forward ybjC(890913,891200) ybjN(892957,893433) 890892-893433 890892-890913 TCACTTTGCAGAGGGAAGCGTA ybjC-nfsA-rimK-ybjN rimK-ybjN rimKp 891876 forward rimK(891967,892869) ybjN(892957,893433) 891876-893433 891876-891967 TTTGCACAAACAGGGTTGGGCGACGCGCTAAAACCGCCACGTCGATGTATGATACGCGGGCTTTTGACCAGGTCTGACAGAGAGGTGCAGGG potFGHI potFGHI potFp2 893634 forward potF(893784,894896) potI(897084,897929) 893634-897929 893634-893784 TTGCGATGCTTTTATATAGCGAGCAGTGCTGGCCGGGAGAAAGTTCTCTTTTCTTACACCGCGCCGATAAAAAATATGCACGTTTATTGCATATCTTTCAGTGTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAGAAGGAAAGAGATA potFGHI potFGHI potFp1 893736 forward potF(893784,894896) potI(897084,897929) 893736-897929 893736-893784 GTGACAACTTTTGTTCGTTTGTTAACGAACTTTCAGAAGGAAAGAGATA artJ artJ artJp 900626 reverse artJ(899844,900575) artJ(899844,900575) rho-dependent(899648,899665) 899648-900626 900575-900626 ATGCCGCAGACACGGCCAAAAATCATAAGATTGACAGACGGGAGTTCCATCA 899648-899844 AGATTCAGAAAGCCGCAACCGCGGCTTGAGACTGATGACAAAGGTAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAACGCGCACTTTGTCAGCAATCTGAAGCCGCACATGCGGCTT artPIQM artPIQM artPp 903769 reverse artP(903006,903734) artM(900866,901534) rho-dependent(900695,900725) 900695-903769 903734-903769 TCAATAGCTATCAGACTGCCAGTATACGAGTGTCAA 900695-900866 ATGTGGCTGCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATGAAGACGGACAACCCACTAAGTTGTCCGTCTT artPIQM artPIQM artPp1 903815 reverse artP(903006,903734) artM(900866,901534) rho-dependent(900695,900725) 900695-903815 903734-903815 GCAGAAATATTGCATAATTATTCTGTCAAAGGTACTATCTTCGACCTCAATAGCTATCAGACTGCCAGTATACGAGTGTCAA 900695-900866 ATGTGGCTGCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATGAAGACGGACAACCCACTAAGTTGTCCGTCTT artPIQM artPIQM artPp2 903836 reverse artP(903006,903734) artM(900866,901534) rho-dependent(900695,900725) 900695-903836 903734-903836 GCTTTGCTTTTAACTTTTAAAGCAGAAATATTGCATAATTATTCTGTCAAAGGTACTATCTTCGACCTCAATAGCTATCAGACTGCCAGTATACGAGTGTCAA 900695-900866 ATGTGGCTGCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATGAAGACGGACAACCCACTAAGTTGTCCGTCTT artPIQM artPIQM artPp3 903843 reverse artP(903006,903734) artM(900866,901534) rho-dependent(900695,900725) 900695-903843 903734-903843 ATAATGCGCTTTGCTTTTAACTTTTAAAGCAGAAATATTGCATAATTATTCTGTCAAAGGTACTATCTTCGACCTCAATAGCTATCAGACTGCCAGTATACGAGTGTCAA 900695-900866 ATGTGGCTGCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTACATAGTGCATAAATTCTTATAATGAAGACGGACAACCCACTAAGTTGTCCGTCTT ybjQ-amiD ybjQ-amiD ybjQp 904517 forward ybjQ(904593,904916) amiD(904913,905743) 904517-905743 904517-904593 GATATCCTTTCAATAATAGCGTATCAGTCTGATAATGCTTTTGAGATCGAAGGCTTAGCAAACAAGGAGATCGATCA ybjP ybjP ybjPp 904523 reverse ybjP(903952,904467) ybjP(903952,904467) 903952-904523 904467-904523 GGATATCATTATTATCGTAGAACGCTTTCAGAGCGATCGCTTATAAGGAAATCATTA hcp-hcr-poxB-ltaE-ybjT ltaE-ybjT ltaEp 909320 reverse ltaE(908293,909294) ybjT(906852,908282) 906852-909320 909294-909320 ATTTCCCGTCATAATAAGGACATGCCA hcp-hcr-poxB-ltaE-ybjT poxB poxBp1 911076 reverse poxB(909331,911049) poxB(909331,911049) 909331-911076 911049-911076 GTTATCACATTCAGGAGATGGAGAACCA hcp-hcr-poxB-ltaE-ybjT poxB poxBp2 911076 reverse poxB(909331,911049) poxB(909331,911049) 909331-911076 911049-911076 GTTATCACATTCAGGAGATGGAGAACCA hcp-hcr-poxB-ltaE-ybjT hcp-hcr hcpp1 913845 reverse hcp(912162,913814) hcr(911182,912150) 911182-913845 913814-913845 TATATTAAATATAACTTTAAAAGGTGTGATCA hcp-hcr-poxB-ltaE-ybjT hcp-hcr-poxB hcpp1 913845 reverse hcp(912162,913814) poxB(909331,911049) 909331-913845 913814-913845 TATATTAAATATAACTTTAAAAGGTGTGATCA hcp-hcr-poxB-ltaE-ybjT hcp-hcr hcpp2 914129 reverse hcp(912162,913814) hcr(911182,912150) 911182-914129 913814-914129 GATTCGCCGCAGCCGCTCTACTGCACTGGGCTTATGCGGTGCCACATCAATGGATTTCACCCTGCCCGTTCTTCAACGTACTGGCGGGCTGGATATGGTCCCGGCGGCAATTGTTCACGGTTTTATTCTTAGCCTGTTAGTGCCGATCCTCATCGCCTTTTTCTCTGCGTAATACCTCTCTGGCGGTAGATCCCTGCCGCCAAAATTGCGCTAAATCAATCTCCCTTAAAGTTGCATGAAAAATCCCTTTTATCCCCGCGTTAAGCGTCTTAACCTTAAACATGTATATTAAATATAACTTTAAAAGGTGTGATCA lysO lysO lysOp 914895 reverse lysO(913958,914857) lysO(913958,914857) 913958-914895 914857-914895 GCGCATTTCGACTTCATCTTTGCAAGGACTGGGTTTTCA ybjX ybjX ybjXp 919103 reverse ybjX(918128,919120) ybjX(918128,919120) 918128-919103 919120-919103 cspD cspD cspDp 922676 reverse cspD(922366,922590) cspD(922366,922590) 922366-922676 922590-922676 AGAGTTGGCGAGGTTTTGAACAGCCCCCTCTCTGACCCCGGTTTATTCCATCTTACTTGTATAAGATTTGCGAAGGATGTCGAAGCA clpS clpS clpSp 922751 forward clpS(922913,923233) clpS(922913,923233) 922751-923233 922751-922913 ATTTGAAGCAGTTAACGCTATTGACAGGAATGTGACAGATGTCGCTGATGCCAACGATAGATGATAGTTATCTATCATGTGGAGTAGATTGGTCAGGCAAATAAGCTCTTGTCAGCGGCAGGGCGTTCTGCCGATAACCGTAACCGAAGATGATAACTGACAA clpA clpA clpAp1 923080 forward clpA(923264,925540) clpA(923264,925540) 923080-925540 923080-923264 ACGTGCAACGCAATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA clpA clpA clpAp2 923092 forward clpA(923264,925540) clpA(923264,925540) 923092-925540 923092-923264 ATTGATGCTCGCTGTTCACTACCAGGGGAAGGCCATTTGCGGAGTCTTTACCGCCGAGGTTGCAGAAACCAAAGTGGCGATGGTGAACAAGTACGCGAGGGAGAATGAGCATCCATTGCTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA clpA clpA clpAp3 923210 forward clpA(923264,925540) clpA(923264,925540) 923210-925540 923210-923264 CTGTGTACGCTAGAAAAAGCCTGAATGCAGGCATAAAAATTGGGGGAGGTGCCTA infA-serW serW serWp2 926006 reverse serW(925884,925971) serW(925884,925971) rho-independent(925843,925871) 925843-926006 925971-926006 GTTGCCACCCATGAGGTTTGGTAGCAAAACAATTTG 925843-925884 ATATTTAAAGAAGAGCTCGTACGAAAGTGCGAGCTTTTTTTT infA-serW serW serWp1 926043 reverse serW(925884,925971) serW(925884,925971) rho-independent(925843,925871) 925843-926043 925971-926043 TTGACCGTTTTACTCCAACTCCCTATAGTAGCGCCCCGTTGCCACCCATGAGGTTTGGTAGCAAAACAATTTG 925843-925884 ATATTTAAAGAAGAGCTCGTACGAAAGTGCGAGCTTTTTTTT infA-serW infA infAp2 926479 reverse infA(926225,926443) infA(926225,926443) rho-independent(926162,926186) 926162-926479 926443-926479 GGTTCAAATTACGGTAGTGATACCCCAGAGGATTAGA 926162-926225 ATTGTTTTACCGCCTGATGGGCGAAGAGAAAGAACGAGTAAAAGGTCGGTTTAACCGGCCTTTT infA-serW infA infAp1 926685 reverse infA(926225,926443) infA(926225,926443) rho-independent(926162,926186) 926162-926685 926443-926685 CGCAGAGTTGGTTACGCTCATTACCCCGCTGCCGATAAGGAATTTTTCGCGTCAGGTAACGCCCATCGTTTATCTCACCGCTCCCTTATACGTTGCGCTTTTGGTGCGGCTTAGCCGTGTGTTTTCGGAGTAATGTGCCGAACCTGTTTGTTGCGATTTAGCGCGCAAATCTTTACTTATTTACAGAACTTCGGCATTATCTTGCCGGTTCAAATTACGGTAGTGATACCCCAGAGGATTAGA 926162-926225 ATTGTTTTACCGCCTGATGGGCGAAGAGAAAGAACGAGTAAAAGGTCGGTTTAACCGGCCTTTT cydDC cydDC cydDp 931031 reverse cydD(929196,930962) cydC(927474,929195) 927474-931031 930962-931031 GCCTTTATTTTTTCCCCGTTGTAACATTGCTCTGCAAATAATTCTGATAACTCACCTGCTAAGCGTGCAA trxB trxB trxBp 932078 reverse trxB(931085,932050) trxB(931085,932050) rho-independent(931019,931061) 931019-932078 932050-932078 ATTGTCTGCCAACAACTATGGGGATCTCA 931019-931085 ATTTTACAAATCAGTAACAAAAGTAAAGAAGGCGACACCATGCGACTATGGGTCGCCTTTATTTTTT lrp lrp lrpp 932328 forward lrp(932595,933089) lrp(932595,933089) 932328-933089 932328-932595 GGAAGAAAAAAAACAGTATTCTTATATGCGCATAACCATGCATGTAAATACCATGTTTACCGTGCTAGTGAAATCTACGTATGGCGTGGACAGACGCCATTCGTGATGTCGATAGCTGCCACAAGGCAACGGTCTTCTCACCGTAGACCCAGGCATTGCGCGCCGTGAATCTTCATGATTTCGGTCTATCGTGACGGGTAGCGACTCTGAACAGTGATGTTTCAGGGTCAGACAGGAGTAGGGAAGGAATACAGAGAGACAATAATAA ftsK ftsK ftsKp2 932929 forward ftsK(933224,937213) ftsK(933224,937213) 932929-937213 932929-933224 ATTTCGACTACCTGTTGAAAACACGCGTGCCGGATATGTCAGCCTACCGTAAGTTGCTGGGGGAAACCCTGCTGCGTCTGCCTGGCGTCAATGACACACGGACATACGTTGTTATGGAAGAAGTCAAGCAGAGTAATCGTCTGGTTATTAAGACGCGCTAACACGGAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCT ftsK ftsK ftsKp1 933138 forward ftsK(933224,937213) ftsK(933224,937213) 933138-937213 933138-933224 CCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCT lolA-rarA lolA-rarA lolAp 937328 forward lolA(937372,937983) rarA(937994,939337) 937328-939337 937328-937372 AGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGA serS serS serSp 939365 forward serS(939428,940720) serS(939428,940720) rho-independent(940741,940765) 939365-940765 939365-939428 GTATCCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCA 940720-940765 ATACCCAATTTTTCTGAATCTAAAAAGCGCCTGCGGGCGCTTTTTT dmsABC dmsABC dmsAp1 940823 forward dmsA(940959,943403) dmsC(944033,944896) 940823-944896 940823-940959 GAGTGAAAATCTACCTATCTCTTTGATTTTCAAATTATTCGATGTATACAAGCCTATATAGCGAACTGCTATAGAAATAATTACACAATACGGTTTGTTACTGGAATCAATCGTGAGCAAGCTTGAGTGAGCCATTA dmsABC dmsABC dmsAp2 940878 forward dmsA(940959,943403) dmsC(944033,944896) 940878-944896 940878-940959 ATATAGCGAACTGCTATAGAAATAATTACACAATACGGTTTGTTACTGGAATCAATCGTGAGCAAGCTTGAGTGAGCCATTA dmsABC dmsC dmsCp 943957 forward dmsC(944033,944896) dmsC(944033,944896) 943957-944896 943957-944033 GTGATCAAACCCAATGCCAATAGCCGCCCGACCGGGGATACCACTGGCTATCTGGCAAACCCGAAGGAGGTGTGAGA pflA pflA pflAp 951154 reverse pflA(950340,951080) pflA(950340,951080) rho-independent(950301,950330) 950301-951154 951080-951154 AAACAGACTCGACGTAGCCTTCGAGCTGCGCACCAACACGGCCTCAGATGGGCCACATCTGGAGAAACACCGCAA 950301-950340 ATTTCCCCGTAAAGCGGCAACTTTATTGAGTTGCCGCTTT focA-pflB pflB pflBp1 953579 reverse pflB(951272,953554) pflB(951272,953554) rho-independent(951207,951266) 951207-953579 953554-953579 ATCCACTTAAGAAGGTAGGTGTTACA 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB pflB pflBp2 953641 reverse pflB(951272,953554) pflB(951272,953554) rho-independent(951207,951266) 951207-953641 953554-953641 GTCATTTACCTGCGTGAAAACGACCACCATTAATGGTTGTCGAAGTACGCAGTAAATAAAAAATCCACTTAAGAAGGTAGGTGTTACA 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB pflB pflBp3 953741 reverse pflB(951272,953554) pflB(951272,953554) rho-independent(951207,951266) 951207-953741 953554-953741 TTCTCACCTGACCGTGATGAATTTCATCACTGATAACCTGATTCCGGTTACGATCGGCAACATTATCGGTGGTGGTTTGTTGGTTGGGTTGACATACTGGGTCATTTACCTGCGTGAAAACGACCACCATTAATGGTTGTCGAAGTACGCAGTAAATAAAAAATCCACTTAAGAAGGTAGGTGTTACA 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB pflB pflBp4 953851 reverse pflB(951272,953554) pflB(951272,953554) rho-independent(951207,951266) 951207-953851 953554-953851 GGTTTTGAGCACAGTATCGCAAACATGTTTATGATCCCGATGGGTATTGTAATCCGCGACTTCGCATCCCCGGAATTTTGGACCGCAGTCGGTTCTGCACCGGAAAATTTTTCTCACCTGACCGTGATGAATTTCATCACTGATAACCTGATTCCGGTTACGATCGGCAACATTATCGGTGGTGGTTTGTTGGTTGGGTTGACATACTGGGTCATTTACCTGCGTGAAAACGACCACCATTAATGGTTGTCGAAGTACGCAGTAAATAAAAAATCCACTTAAGAAGGTAGGTGTTACA 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB pflB pflBp5 953925 reverse pflB(951272,953554) pflB(951272,953554) rho-independent(951207,951266) 951207-953925 953554-953925 TGAGTTATTCTGGCCGCAGCCTGATGGACAAAGCGTTCATTATGGTGCTGCCGGTCGCGATGTTTGTTGCCAGCGGTTTTGAGCACAGTATCGCAAACATGTTTATGATCCCGATGGGTATTGTAATCCGCGACTTCGCATCCCCGGAATTTTGGACCGCAGTCGGTTCTGCACCGGAAAATTTTTCTCACCTGACCGTGATGAATTTCATCACTGATAACCTGATTCCGGTTACGATCGGCAACATTATCGGTGGTGGTTTGTTGGTTGGGTTGACATACTGGGTCATTTACCTGCGTGAAAACGACCACCATTAATGGTTGTCGAAGTACGCAGTAAATAAAAAATCCACTTAAGAAGGTAGGTGTTACA 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB focA-pflB focAp1 954493 reverse focA(953609,954466) pflB(951272,953554) rho-independent(951207,951266) 951207-954493 954466-954493 CGCCGACTTAATAAAGAGAGAGTTAGTG 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB focA-pflB focAp2 954503 reverse focA(953609,954466) pflB(951272,953554) rho-independent(951207,951266) 951207-954503 954466-954503 AGTATCTCGTCGCCGACTTAATAAAGAGAGAGTTAGTG 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT focA-pflB focA-pflB focAp3 954814 reverse focA(953609,954466) pflB(951272,953554) rho-independent(951207,951266) 951207-954814 954466-954814 GTTTTTTTAATGCCCCGCTTTACATATATTTGCATTAATAAAATAATTGTAATTATAAGGTTAAATATCGGTAATTTGTATTTAATAAATACGATCGATATTGTTACTTTATTCGCCTGATGCTCCCTTTTAATTAACTGTTTTAGCGGAGGATGCGGAAAAAATTCAACTCATTTGTTAATTTTTAAAATTTATTTTTATTTGGATAATCAAATATTTACTCCGTATTTGCATAAAAACCATGCGAGTTACGGGCCTATAAGCCAGGCGAGATATGATCTATATCAATTTCTCATCTATAATGCTTTGTTAGTATCTCGTCGCCGACTTAATAAAGAGAGAGTTAGTG 951207-951272 ATTAGATTTGACTGAAATCGTACAGTAAAAAGCGTACAATAAAGGCTCCACGAAAGTGGGGCCTTT serC-aroA serC serCp2 957579 forward serC(957653,958741) serC(957653,958741) 957579-958741 957579-957653 ACAGGAATAATGTATTACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGAAA serC-aroA serC serCp1 957595 forward serC(957653,958741) serC(957653,958741) 957595-958741 957595-957653 ACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGAAA serC-aroA serC-aroA serCp1 957595 forward serC(957653,958741) aroA(958812,960095) 957595-960095 957595-957653 ACCTGTGGTCGCAATCGATTGACCGCGGGTTAATAGCAACGCAACGTGGTGAGGGGAAA cmk-rpsA-ihfB cmk-rpsA cmkp 961165 forward cmk(961201,961884) rpsA(961995,963668) rho-independent(963662,963716) 961165-963716 961165-961201 TTATGTTAACGGTACGCCTGTTTTAAGGAGATAAAGA 963668-963716 ATTCTCTGACTCTTCGGGATTTTTATTCCGAAGTTTGTTGAGTTTACTT cmk-rpsA-ihfB rpsA-ihfB rpsAp1 961717 forward rpsA(961995,963668) ihfB(963828,964112) rho-independent(964119,964173) 961717-964173 961717-961995 CGCCTTTTGGCCGAGATCAAAGAACGCGACGACCGCGATCGTAACCGAGCGGTAGCGCCACTGGTTCCGGCAGCCGATGCTTTAGTGTTGGATTCCACCACCTTAAGCATTGAGCAAGTGATTGAAAAAGCGCTACAATACGCGCGCCAGAAATTGGCTCTCGCATAAGCGACCGAATTTGCAGTACCCCCGTTGCAATGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACA 964112-964173 AGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTGCTTTTTTCATTTCTCTA cmk-rpsA-ihfB rpsA-ihfB rpsAp3 961859 forward rpsA(961995,963668) ihfB(963828,964112) rho-independent(964119,964173) 961859-964173 961859-961995 CGCGCCAGAAATTGGCTCTCGCATAAGCGACCGAATTTGCAGTACCCCCGTTGCAATGGAATGACAGCGGGTATGTTAAACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACA 964112-964173 AGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTGCTTTTTTCATTTCTCTA cmk-rpsA-ihfB ihfB ihfBp 963749 forward ihfB(963828,964112) ihfB(963828,964112) rho-independent(964119,964173) 963749-964173 963749-963828 ACTAAGGGCGGCTACGGCCGCCCTTAATCAATGCAGCAACAGCAGCCGCTTAATTTGCCTTTAAGGAACCGGAGGAATCA 964112-964173 AGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTGCTTTTTTCATTTCTCTA cmk-rpsA-ihfB ihfB ihfBp2 963749 forward ihfB(963828,964112) ihfB(963828,964112) rho-independent(964119,964173) 963749-964173 963749-963828 ACTAAGGGCGGCTACGGCCGCCCTTAATCAATGCAGCAACAGCAGCCGCTTAATTTGCCTTTAAGGAACCGGAGGAATCA 964112-964173 AGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCGGGTGCTTTTTTCATTTCTCTA ycaR-kdsB ycaR-kdsB ycaRp 970642 forward ycaR(970673,970855) kdsB(970852,971598) 970642-971598 970642-970673 GCATTCATAACCCGATCCATCTGGAGGAACTA ycbJ ycbJ ycbJp 971672 forward ycbJ(971752,972645) ycbJ(971752,972645) 971672-972645 971672-971752 CAACAATTGATCTCATTCAGGTGACATCTTTTATATTGGCGCTCATTATGAAAGCAGTAGCTTTTATGAGGGTAATCTGAA cmoM-mukFEB smtA-mukFEB cmoMp 973404 forward cmoM(973537,974322) mukB(976326,980786) 973404-980786 973404-973537 TTTCTGGTTCCTTTTTTAACCATATAGCAAGGGATCGCCAGCGATATTACACCAGACGGGTTCATTCTCGCCGTGGCTGTGACAAAATAGCGTCTTTATCAGAAAACGTCTTAGCCAACCGGTGGAGAAAGCAA ldtD ldtD ldtDp 980931 forward ldtD(981047,982894) ldtD(981047,982894) 980931-982894 980931-981047 AAGCCTGATGAGTAACAGGCTTGCTCGTCATACTTTCGTGAGTATTGGCGTTGTACAGGCAAGTCGTAAAATAACAGCCTGGCTATTCAGAGTATGATAAAAACAGGGGGCAAGGGA mepK-gloC mepK-gloC mepKp 983023 forward mepK(983075,983623) gloC(983650,984297) 983023-984297 983023-983075 GTGCGCCAGAAGTGCATATAAACGATAACATTGACCTGTAGACTTGATTATCA aspC aspC aspCp 985743 reverse aspC(984519,985709) aspC(984519,985709) 984519-985743 985709-985743 GACTTCCCTTCTGTAACCATAATGGAACCTCGTCA ompF ompF ompFp 987092 reverse ompF(985894,986982) ompF(985894,986982) rho-independent(985831,985885) 985831-987092 986982-987092 AGACACATAAAGACACCAAACTCTCATCAATAGTTCCGTAAATTTTTATTGACAGAACTTATTGACGGCAGTGGCAGGTGTCATAAAAAAAACCATGAGGGTAATAAATAA 985831-985894 ATAGCACACCTCTTTGTTAAATGCCGAAAAAACAGGACTTTGGTCCTGTTTTTTTTATACCTTC ompF ompF ompFp2 987092 reverse ompF(985894,986982) ompF(985894,986982) rho-independent(985831,985885) 985831-987092 986982-987092 AGACACATAAAGACACCAAACTCTCATCAATAGTTCCGTAAATTTTTATTGACAGAACTTATTGACGGCAGTGGCAGGTGTCATAAAAAAAACCATGAGGGTAATAAATAA 985831-985894 ATAGCACACCTCTTTGTTAAATGCCGAAAAAACAGGACTTTGGTCCTGTTTTTTTTATACCTTC asnS asnS asnSp 989044 reverse asnS(987585,988985) asnS(987585,988985) rho-independent(987392,987438) 987392-989044 988985-989044 CCCCCCATTTACGGGTGGACAAGTGTTTATTTTTTCCGACTATTAACAGAGAGAATATTA 987392-987585 ATTTAGCGTCTTCAAGAGCCAGCGCCCGCTGGCTCTTTTTTTATCTTTTCTGTCAAGTTATCTGTTTGTTAAGTCAAGCAATCTATTTGCAACCCCGCCATAACGATCATCCTGTTACGGAATATTACATTGCAACATTTACGCGCAAAAACTAATCCGCATTCTTATTGCGGATTAGTTTTTTCTTAGCTAAT pncB pncB pncBp 990414 reverse pncB(989154,990356) pncB(989154,990356) 989154-990414 990356-990414 GTTCCTGAAGATGTTTATTGTACTAAACGCTCCTGTACGAGGACGCTACTGCGCACCTA pepN pepN pepNp 990591 forward pepN(990622,993234) pepN(990622,993234) 990591-993234 990591-990622 CAGACTCTATAAAAGATGCTAAAGGTTATTTA ssuEADCB ssuEADCB ssuEp 997563 reverse ssuE(996937,997512) ssuB(993277,994044) 993277-997563 997512-997563 AATTGTTATCAATGTTAACAAAAAAAGAACAATTGGTTATAAGGAGAGAGTA pyrD pyrD pyrDp 1004732 forward pyrD(1004768,1005778) pyrD(1004768,1005778) 1004732-1005778 1004732-1004768 GCCCCCGGTTTGCACACCGGGAATCCAGGAGAGTTCA rlmL-uup rlmL-uup rlmLp 1007672 forward rlmL(1007844,1009952) uup(1009964,1011871) 1007672-1011871 1007672-1007844 AATTTTCTTAGCGCCTGTCCCATTAGGCTATTTTATTTGTCAGTTTGGCCCTGGGTTATGCTCGAAATCCTCACGTACTTGTGTACGCTCCGGTTTCTCCGCGCTGTCCATGTCCAGACTGACTGCAACAATTACGCCTACTGCGGTAGGCTCTTAGAGTAAAAGTGACGATA pqiABC pqiABC pqiAp2 1011659 forward pqiA(1012001,1013254) pqiC(1014896,1015459) 1011659-1015459 1011659-1012001 TTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAA pqiABC pqiABC pqiAp 1011659 forward pqiA(1012001,1013254) pqiC(1014896,1015459) 1011659-1015459 1011659-1012001 TTGCAGCGCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAA pqiABC pqiABC pqiAp1 1011666 forward pqiA(1012001,1013254) pqiC(1014896,1015459) 1011666-1015459 1011666-1012001 GCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAA pqiABC pqiABC pqiAp3 1011666 forward pqiA(1012001,1013254) pqiC(1014896,1015459) 1011666-1015459 1011666-1012001 GCGAACTGGAGCAGCTACCGCAATTGCTCGAAGATCTGGAGGCGAAGCTGGAAGCCCTACAGACGCAAGTGGCGGATGCTTCCTTCTTCAGTCAGCCGCATGAGCAGACGCAAAAAGTGCTTGCTGATATGGCTGCTGCAGAGCAGGAGCTGGAGCAAGCCTTTGAACGCTGGGAGTATCTTGAAGCGTTAAAAAATGGTGGCTGATCGCAAAATAGTCGATTTAAACAGAGACAGCTGACAACGGTAAAATTGCCTGATGAACTGGGTTTATCAGGCATGAAAACCAACACTTTGTTAGTCATCTGTAAAATAGCGCATCATTAAGGAGTACCAA rmf rmf rmfp 1015657 forward rmf(1015715,1015882) rmf(1015715,1015882) rho-independent(1015900,1015924) 1015657-1015924 1015657-1015715 CACATTTAGTAATCACTGTTTTCTTTTCCACCAGAAACCAGTATGAGGGAAACGAGGCA 1015882-1015924 ATTCTGTCTCTTTAAAAAGAAACCTCCGCATTGCGGAGGTTTC fabA fabA fabAp 1016498 reverse fabA(1015952,1016470) fabA(1015952,1016470) 1015952-1016498 1016470-1016498 CTTCAATAAAATAAGGCTTACAGAGAACA matP matP matPp 1018459 forward matP(1018485,1018937) matP(1018485,1018937) 1018459-1018937 1018459-1018485 AGTTACACGGTAACATTGAGATCGCTA ompA ompA ompAp2 1020187 reverse ompA(1019013,1020053) ompA(1019013,1020053) 1019013-1020187 1020053-1020187 CGCCAGGGGTGCTCGGCATAAGCCGAAGATATCGGTAGAGTTAATATTGAGCAGATCCCCCGGTGAAGGATTTAACCGTGTTATCTCGTTGGAGATATTCATGGCGTATTTTGGATGATAACGAGGCGCAAAAAA ompA ompA ompAp1 1020191 reverse ompA(1019013,1020053) ompA(1019013,1020053) 1019013-1020191 1020053-1020191 ACATCGCCAGGGGTGCTCGGCATAAGCCGAAGATATCGGTAGAGTTAATATTGAGCAGATCCCCCGGTGAAGGATTTAACCGTGTTATCTCGTTGGAGATATTCATGGCGTATTTTGGATGATAACGAGGCGCAAAAAA sulA sulA sulAp 1020947 reverse sulA(1020410,1020919) sulA(1020410,1020919) 1020410-1020947 1020919-1020947 ACAGTAACTCACAGGGGCTGGATTGATTA sxy yccR sxyp 1021083 forward sxy(1021138,1021767) sxy(1021138,1021767) 1021083-1021767 1021083-1021138 AACGGATCCGTTAATGTGAATCATTCTTTTATGTTATGATTTTAAAAGGAATTTTA yccFS yccFS yccFp 1024365 reverse yccF(1023902,1024348) yccS(1021730,1023883) 1021730-1024365 1024348-1024365 CAGTAAAGCGAGGTTTTA helD helD helDp 1024438 forward helD(1024471,1026525) helD(1024471,1026525) 1024438-1026525 1024438-1024471 ATAAGAAATAATTTCGTGTGGATCTACAGAGTCA mgsA mgsA mgsAp 1027041 reverse mgsA(1026557,1027015) mgsA(1026557,1027015) 1026557-1027041 1027015-1027041 AGGAAAGTTAACTACGGATGTACATTA yccT yccT yccTp 1027837 reverse yccT(1027111,1027773) yccT(1027111,1027773) 1027111-1027837 1027773-1027837 AAGTATGATTAAAGAAAAATTTTGACACATTATTATTCGGGCGGTCTTTTGACAGGAGCTACCTA yccA yccA yccAp 1031443 reverse yccA(1030759,1031418) yccA(1030759,1031418) rho-independent(1030701,1030755) 1030701-1031443 1031418-1031443 TACATCTGTCATAGAGAGTGACTCAA 1030701-1030759 ATCTCACCCGCTAACACTTTCATAGCCTCGCTTTATGCGGGGCTTTGTTTTTTGTTACA serT serT serTp 1031719 reverse serT(1031625,1031712) serT(1031625,1031712) rho-independent(1031551,1031574) 1031551-1031719 1031712-1031719 TCATTCCG 1031551-1031625 AAATAAGATAAGGGGTTAGCTAAATGCTAACCCCTTTTTCTTTTGCCTGTCGAAATTCTCAGGGCGTTATATTTG serT serT serTp 1031719 reverse serT(1031625,1031712) serT(1031625,1031712) rho-independent(1031590,1031617) 1031590-1031719 1031712-1031719 TCATTCCG 1031590-1031625 AAATAAGATAAGGGGTTAGCTAAATGCTAACCCCTT hyaABCDEF hyaABCDEF hyaAp 1031984 forward hyaA(1032139,1033257) hyaF(1036749,1037606) rho-independent(1037608,1037634) 1031984-1037634 1031984-1032139 CAATACTTTCTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCATCTCACGTGAAGCGATGGTTTGCCTTGCTACAGGGACGTCGCTTGCCGACCATAAGCGCCCGGTGTCCTGCCGGTGTCGCAAGGAGGAGAGACGTGCGATA 1037606-1037634 AAAAGACGGTAAGTATCGCTTTCAGTCTT hyaABCDEF hyaABCDEF hyaAp2 1031984 forward hyaA(1032139,1033257) hyaF(1036749,1037606) rho-independent(1037608,1037634) 1031984-1037634 1031984-1032139 CAATACTTTCTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCATCTCACGTGAAGCGATGGTTTGCCTTGCTACAGGGACGTCGCTTGCCGACCATAAGCGCCCGGTGTCCTGCCGGTGTCGCAAGGAGGAGAGACGTGCGATA 1037606-1037634 AAAAGACGGTAAGTATCGCTTTCAGTCTT appCBXA appCBA-yccB appCp 1037710 forward appC(1037740,1039284) appA(1040617,1041915) 1037710-1041915 1037710-1037740 ATTTTTCTCTCTTCGCCTACAGGAGTGCGCA appCBXA appCBA-yccB appCp2 1037710 forward appC(1037740,1039284) appA(1040617,1041915) 1037710-1041915 1037710-1037740 ATTTTTCTCTCTTCGCCTACAGGAGTGCGCA appCBXA appA appAp 1040599 forward appA(1040617,1041915) appA(1040617,1041915) 1040599-1041915 1040599-1040617 AAAAGCGGAAACATATCGA gfcA gfcA gfcAp 1050702 reverse gfcA(1049439,1049744) gfcA(1049439,1049744) 1049439-1050702 1049744-1050702 GTCGTATTTCCAGAGGGGGATAGTTAACAATCTTATATTTCCCTCTGCGCGCCTTTCCTACCCGCAGTATATAGTGCAAGCGGTATGAGGAAAGGGAGATTTCACAAGGATGTTATACTCAAAGTAGACAATCCTGATCTCAAGCGTACGTATTGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATACCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCCCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCAGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGAACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCGTATTGTCCATGCGATGAATAAAGGAAAAGTTA ymcE-gnsA gnsA gnsAp2 1051999 forward gnsA(1052067,1052240) gnsA(1052067,1052240) 1051999-1052240 1051999-1052067 GACCAGGGTACCGGGAACCAACACCTTACTGGCGTGTTGCTGTCTTTTAAGACCAGAAGAGGTTAACAG ymcE-gnsA gnsA gnsAp1 1052004 forward gnsA(1052067,1052240) gnsA(1052067,1052240) 1052004-1052240 1052004-1052067 GGGTACCGGGAACCAACACCTTACTGGCGTGTTGCTGTCTTTTAAGACCAGAAGAGGTTAACAG torR torR torRp 1057984 reverse torR(1057262,1057954) torR(1057262,1057954) 1057262-1057984 1057954-1057984 AGATATGAACAGAATGAGTAAAACCCTCTGA torCAD torCAD torCp 1058056 forward torC(1058084,1059256) torD(1061799,1062398) 1058056-1062398 1058056-1058084 ACTAAACCATAATTCTACAGGGGTTATTA cbpAM cbpAM cbpAp2 1063828 reverse cbpA(1062855,1063775) cbpM(1062550,1062855) 1062550-1063828 1063775-1063828 AGTTACCTTACAGGGGTTCCTTCAATTTGTGTTGATTTACGCGAGATAACGCTA cbpAM cbpAM cbpAp1 1063833 reverse cbpA(1062855,1063775) cbpM(1062550,1062855) 1062550-1063833 1063775-1063833 ATAGGAGTTACCTTACAGGGGTTCCTTCAATTTGTGTTGATTTACGCGAGATAACGCTA cbpAM cbpA-cbpM cbpAp4 1063919 reverse cbpA(1062855,1063775) cbpM(1062550,1062855) 1062550-1063919 1063775-1063919 CATCTTGATGGCGACCTCCTCTCCGCGATGATTTCAATAACATATTCTGTGTTGGCATATGAAATTTTGAGGATTACCCTACACTTATAGGAGTTACCTTACAGGGGTTCCTTCAATTTGTGTTGATTTACGCGAGATAACGCTA cbpAM cbpA-cbpM cbpAp6 1064037 reverse cbpA(1062855,1063775) cbpM(1062550,1062855) 1062550-1064037 1063775-1064037 ATATATAGCGTCTATAAAATTTAATAAATAATGACGCCCTAGTTAAACTTAAAGTGCCTGGTTCAACTATCAAAAATCGCTCACCCTTTTTCACCTGTTTAAAATATGTTCAGCAACCCATCTTGATGGCGACCTCCTCTCCGCGATGATTTCAATAACATATTCTGTGTTGGCATATGAAATTTTGAGGATTACCCTACACTTATAGGAGTTACCTTACAGGGGTTCCTTCAATTTGTGTTGATTTACGCGAGATAACGCTA cbpAM cbpA-cbpM cbpAp 1064037 reverse cbpA(1062855,1063775) cbpM(1062550,1062855) 1062550-1064037 1063775-1064037 ATATATAGCGTCTATAAAATTTAATAAATAATGACGCCCTAGTTAAACTTAAAGTGCCTGGTTCAACTATCAAAAATCGCTCACCCTTTTTCACCTGTTTAAAATATGTTCAGCAACCCATCTTGATGGCGACCTCCTCTCCGCGATGATTTCAATAACATATTCTGTGTTGGCATATGAAATTTTGAGGATTACCCTACACTTATAGGAGTTACCTTACAGGGGTTCCTTCAATTTGTGTTGATTTACGCGAGATAACGCTA agp agp agpp 1065559 forward agp(1065585,1066826) agp(1065585,1066826) rho-independent(1066833,1066857) 1065559-1066857 1065559-1065585 GATTGATAACAAAAGAGGTGCCAGGAA 1066826-1066857 ACAGAAAACTCCCCCGCGAGAAGCGGGGGAGT wrbA-yccJ wrbA-yccJ wrbAp 1067758 reverse wrbA(1067112,1067708) yccJ(1066864,1067091) 1066864-1067758 1067708-1067758 AGTGGTAGCGAATCGCTACGGAATAGAGATAACACGAGGAGTGGTTAGAAA rutABCDEFG rutABCDEFG rutAp 1074026 reverse rutA(1072863,1074011) rutG(1068511,1069839) 1068511-1074026 1074011-1074026 GCGGCTGAAAAGGATA rutR rutR rutRp2 1074113 forward rutR(1074242,1074880) rutR(1074242,1074880) 1074113-1074880 1074113-1074242 TAAAAAGTGGACTAAACGGTCAAAACAGTTGCACATAAAACATGCATCTGTGCGCGATGAGAGTGCAGAAGGTCGAGGCCGGGCGGGGGTTTTGCTATCCTGTTGCCAATCTACAAGAGGGGAGAGCGCA rutR rutR rutRp1 1074134 forward rutR(1074242,1074880) rutR(1074242,1074880) 1074134-1074880 1074134-1074242 AAAACAGTTGCACATAAAACATGCATCTGTGCGCGATGAGAGTGCAGAAGGTCGAGGCCGGGCGGGGGTTTTGCTATCCTGTTGCCAATCTACAAGAGGGGAGAGCGCA putA putA putAp 1078925 reverse putA(1074920,1078882) putA(1074920,1078882) 1074920-1078925 1078882-1078925 GATAACGTTAAGTTGCACCTTTCTGAACAACAGGAGTAATGGCA putP putP putPp1 1079168 forward putP(1079305,1080813) putP(1079305,1080813) rho-independent(1080794,1080838) 1079168-1080838 1079168-1079305 TAAATCGATTGTGAATAACCAGCGCTTCCGGCAGGATACGGTCGCCCTGGTAAAACATAAACTCTGTTACCCCGTTCCGGTGGCAGATATAACGGCAAGTTTCGACATTGCCGATAATAATTTTTTGGAGACTTTAGA 1080813-1080838 AGGGACTTAGCCTGCGGCGGTTTTGT putP putP putPp2 1079179 forward putP(1079305,1080813) putP(1079305,1080813) rho-independent(1080794,1080838) 1079179-1080838 1079179-1079305 TGAATAACCAGCGCTTCCGGCAGGATACGGTCGCCCTGGTAAAACATAAACTCTGTTACCCCGTTCCGGTGGCAGATATAACGGCAAGTTTCGACATTGCCGATAATAATTTTTTGGAGACTTTAGA 1080813-1080838 AGGGACTTAGCCTGCGGCGGTTTTGT putP putP putPp3 1079185 forward putP(1079305,1080813) putP(1079305,1080813) rho-independent(1080794,1080838) 1079185-1080838 1079185-1079305 ACCAGCGCTTCCGGCAGGATACGGTCGCCCTGGTAAAACATAAACTCTGTTACCCCGTTCCGGTGGCAGATATAACGGCAAGTTTCGACATTGCCGATAATAATTTTTTGGAGACTTTAGA 1080813-1080838 AGGGACTTAGCCTGCGGCGGTTTTGT putP putP putPp4 1079210 forward putP(1079305,1080813) putP(1079305,1080813) rho-independent(1080794,1080838) 1079210-1080838 1079210-1079305 CGCCCTGGTAAAACATAAACTCTGTTACCCCGTTCCGGTGGCAGATATAACGGCAAGTTTCGACATTGCCGATAATAATTTTTTGGAGACTTTAGA 1080813-1080838 AGGGACTTAGCCTGCGGCGGTTTTGT putP putP putPp5 1079291 forward putP(1079305,1080813) putP(1079305,1080813) rho-independent(1080794,1080838) 1079291-1080838 1079291-1079305 TTTGGAGACTTTAGA 1080813-1080838 AGGGACTTAGCCTGCGGCGGTTTTGT efeU efeU efeUp 1081307 forward efeU(1081356,1082185) efeU(1081356,1082185) 1081307-1082185 1081307-1081356 ACTTTTCTTTGCATAGATTGACTCAGAAAAACGTTTAAGGGTGGGTGGCA phoH phoH phoHp1 1084865 forward phoH(1084992,1086056) phoH(1084992,1086056) rho-independent(1086071,1086095) 1084865-1086095 1084865-1084992 ACTGAAATGGTGTTTTATAGTTAAATATAAGTAAATATATTGTTGCAATAAATGCGAGATCTGTTGTACTTATTAAGTAGCAGCGGAAGTTCCCGGCAGTGATAGTCAGTCACTATGGAGATCGCGGA 1086056-1086095 AGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTG phoH phoH phoHp2 1084938 forward phoH(1084992,1086056) phoH(1084992,1086056) rho-independent(1086071,1086095) 1084938-1086095 1084938-1084992 TAAGTAGCAGCGGAAGTTCCCGGCAGTGATAGTCAGTCACTATGGAGATCGCGGA 1086056-1086095 AGTGTGTTATCGGTGCAGAGCCCGGGCGAACCGGGCTTTG pgaABCD pgaABCD pgaAp 1092523 reverse pgaA(1089866,1092289) pgaD(1086106,1086519) 1086106-1092523 1092289-1092523 AGGCATTGGGATTTATGCCGTATTCCTGAAGATCCTCATCATTGGAATGGATTTTCGGGCGAGAAAAGGATTTTATATGGACACTCTGCTCATCATTTCTTCTTCTCATCATCAACAATTCACGTCTCTCTTCCGCGTTTAATAACGGATTATGAGGTGCAAAAATATCTTTCTTTTCAGTTACCTGTAATTAGATACAGAGAGAGATTTTGGCAATACATGGAGTAATACAGGA dgcT ycdT ycdTp 1092841 forward dgcT(1092876,1094234) dgcT(1092876,1094234) 1092841-1094234 1092841-1092876 AAAGGGATCTACAACCTACAGATTGGTGTAGCTTTA serX serX serXp 1097676 reverse serX(1097565,1097652) serX(1097565,1097652) rho-independent(1097522,1097561) 1097522-1097676 1097652-1097676 CCAGCAAGACAGGAACGACAATTTG 1097522-1097565 ATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCG serX serX serXp 1097676 reverse serX(1097565,1097652) serX(1097565,1097652) rho-independent(1097160,1097199) 1097160-1097676 1097652-1097676 CCAGCAAGACAGGAACGACAATTTG 1097160-1097565 ATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCG serX serX serXp 1097676 reverse serX(1097565,1097652) serX(1097565,1097652) rho-independent(1097341,1097380) 1097341-1097676 1097652-1097676 CCAGCAAGACAGGAACGACAATTTG 1097341-1097565 ATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCG serX serX serXp 1097676 reverse serX(1097565,1097652) serX(1097565,1097652) rho-independent(1096979,1097018) 1096979-1097676 1097652-1097676 CCAGCAAGACAGGAACGACAATTTG 1096979-1097565 ATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGGTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCG ycdZ ycdZ ycdZp4 1100252 forward ycdZ(1100296,1100787) ycdZ(1100296,1100787) 1100252-1100787 1100252-1100296 GCTCGATCTCATTCATGGCCGCGTTTTCTGCTATCATGCGCGGCA csgDEFG csgDEFG csgDp2 1103335 reverse csgD(1102546,1103196) csgG(1100851,1101684) 1100851-1103335 1103196-1103335 TCCATTAGTTTTATATTTTACCCATTTAGGGCTGATTTATTACTACACACAGCAGTGCAACATCTGTCAGTACTTCTGGTGCTTCTATTTTAGAGGCAGCTGTCAGGTGTGCGATCAATAAAAAAAGCGGGGTTTCATCA csgDEFG csgDEFG csgDp 1103335 reverse csgD(1102546,1103196) csgG(1100851,1101684) 1100851-1103335 1103196-1103335 TCCATTAGTTTTATATTTTACCCATTTAGGGCTGATTTATTACTACACACAGCAGTGCAACATCTGTCAGTACTTCTGGTGCTTCTATTTTAGAGGCAGCTGTCAGGTGTGCGATCAATAAAAAAAGCGGGGTTTCATCA csgDEFG csgDEFG csgDp1 1103344 reverse csgD(1102546,1103196) csgG(1100851,1101684) 1100851-1103344 1103196-1103344 CAGATGTAATCCATTAGTTTTATATTTTACCCATTTAGGGCTGATTTATTACTACACACAGCAGTGCAACATCTGTCAGTACTTCTGGTGCTTCTATTTTAGAGGCAGCTGTCAGGTGTGCGATCAATAAAAAAAGCGGGGTTTCATCA csgDEFG csgDEFG csgDp3 1103344 reverse csgD(1102546,1103196) csgG(1100851,1101684) 1100851-1103344 1103196-1103344 CAGATGTAATCCATTAGTTTTATATTTTACCCATTTAGGGCTGATTTATTACTACACACAGCAGTGCAACATCTGTCAGTACTTCTGGTGCTTCTATTTTAGAGGCAGCTGTCAGGTGTGCGATCAATAAAAAAAGCGGGGTTTCATCA csgBAC csgBAC csgBp 1103859 forward csgB(1103951,1104406) csgC(1104961,1105293) 1103859-1105293 1103859-1103951 GTAACGCAGCGTTAACAAAATACAGGTTGCGTTAACAACCAAGTTGAAATGATTTAATTTCTTAAATGTACGACCAGGTCCAGGGTGACAACA csgBAC csgBAC csgBp2 1103859 forward csgB(1103951,1104406) csgC(1104961,1105293) 1103859-1105293 1103859-1103951 GTAACGCAGCGTTAACAAAATACAGGTTGCGTTAACAACCAAGTTGAAATGATTTAATTTCTTAAATGTACGACCAGGTCCAGGGTGACAACA csgBAC csgA csgAp 1104236 forward csgA(1104447,1104902) csgA(1104447,1104902) 1104236-1104902 1104236-1104447 GCGGGCAGTGCCAACGATGCCAGTATTTCGCAAGGTGCTTATGGTAATACTGCGATGATTATCCAGAAAGGTTCTGGTAATAAAGCAAATATTACACAGTATGGTACTCAAAAAACGGCAATTGTAGTGCAGAGACAGTCGCAAATGGCTATTCGCGTGACACAACGTTAATTTCCATTCGACTTTTAAATCAATCCGATGGGGGTTTTACA ymdAB-clsC ymdA ymdAp 1105201 forward ymdA(1105414,1105725) ymdA(1105414,1105725) 1105201-1105725 1105201-1105414 CCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAA ymdAB-clsC ymdAB-clsC ymdAp 1105201 forward ymdA(1105414,1105725) clsC(1106355,1107776) 1105201-1107776 1105201-1105414 CCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAA ymdAB-clsC ymdAB ymdAp 1105201 forward ymdA(1105414,1105725) ymdB(1105820,1106353) 1105201-1106353 1105201-1105414 CCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAA ymdAB-clsC ymdB-clsC ymdBp 1105803 forward ymdB(1105820,1106353) clsC(1106355,1107776) 1105803-1107776 1105803-1105820 AGGTGTAAGGAGGCGTTA ymdAB-clsC ymdB ymdBp 1105803 forward ymdB(1105820,1106353) ymdB(1105820,1106353) 1105803-1106353 1105803-1105820 AGGTGTAAGGAGGCGTTA ymdAB-clsC clsC clsCp 1106292 forward clsC(1106355,1107776) clsC(1106355,1107776) 1106292-1107776 1106292-1106355 GTTATGATGAAGAAAACGCCCACCTCTACGAAAGACTCCTTACCCAACAAGGAGATGAATGATT opgGH mdoGH opgGp2 1109257 forward opgG(1109335,1110870) opgH(1110863,1113406) rho-independent(1113532,1113560) 1109257-1113560 1109257-1109335 TTATCCATTAAAATAGATCGGATCGATATAAGCACACAAAGGGGGAAGTGCTTACTAATTATGAAACATAAACTACAAA 1113406-1113560 AAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTT opgGH mdoGH opgGp 1109257 forward opgG(1109335,1110870) opgH(1110863,1113406) rho-independent(1113532,1113560) 1109257-1113560 1109257-1109335 TTATCCATTAAAATAGATCGGATCGATATAAGCACACAAAGGGGGAAGTGCTTACTAATTATGAAACATAAACTACAAA 1113406-1113560 AAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTT opgGH mdoGH opgGp1 1109278 forward opgG(1109335,1110870) opgH(1110863,1113406) rho-independent(1113532,1113560) 1109278-1113560 1109278-1109335 ATCGATATAAGCACACAAAGGGGGAAGTGCTTACTAATTATGAAACATAAACTACAAA 1113406-1113560 AAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTT msyB msyB msyBp 1114213 reverse msyB(1113807,1114181) msyB(1113807,1114181) 1113807-1114213 1114181-1114213 TGAAACCTCATCAACTCAAAGGGAGAATCGTGA lpxL lpxL lpxLp 1116709 reverse lpxL(1115662,1116582) lpxL(1115662,1116582) 1115662-1116709 1116582-1116709 ATTAAAAATTATTTGTTATTTACAAGCGCGGCAATTTCGCCCAGTCTTCAGCCACAAATTTTGGTTGCGGGCGAAAAAATGCGACAATACATACAATTGCCCGAATAGGTTGAAAAACAGGATTGATA trhO yceA yceAp 1116772 forward trhO(1116807,1117859) trhO(1116807,1117859) 1116772-1117859 1116772-1116807 ATTTTTACTTTCCCATCTCGCAGGAACCGTACACCA yceJI yceJI yceJp 1119071 reverse yceJ(1118480,1119046) yceI(1117901,1118476) 1117901-1119071 1119046-1119071 TCGCAAATTCGTTTTGGATGCACTTA yceJI yceJI yceJp2 1119071 reverse yceJ(1118480,1119046) yceI(1117901,1118476) 1117901-1119071 1119046-1119071 TCGCAAATTCGTTTTGGATGCACTTA solA-yceO solA-yceO solAp 1120609 reverse solA(1119468,1120586) yceO(1119307,1119447) 1119307-1120609 1120586-1120609 ACCATGAGAGCAGAGAGAAAAAAA bssS bssS bssSp 1121020 reverse bssS(1120701,1120955) bssS(1120701,1120955) 1120701-1121020 1120955-1121020 GCTTCAGATAAAAACGCATTGAACCTCGAATAACGTTGTCTAGTAACACGAATTAGGGGGCCATGA bssS bssS bssSp2 1121032 reverse bssS(1120701,1120955) bssS(1120701,1120955) 1120701-1121032 1120955-1121032 TATACTGAAGTTGCTTCAGATAAAAACGCATTGAACCTCGAATAACGTTGTCTAGTAACACGAATTAGGGGGCCATGA bssS bssS bssSp1 1121058 reverse bssS(1120701,1120955) bssS(1120701,1120955) 1120701-1121058 1120955-1121058 ATTCGGTGAATACCCTTACTTATTGGTATACTGAAGTTGCTTCAGATAAAAACGCATTGAACCTCGAATAACGTTGTCTAGTAACACGAATTAGGGGGCCATGA dinI dinI dinIp 1121509 reverse dinI(1121242,1121487) dinI(1121242,1121487) 1121242-1121509 1121487-1121509 GTATATTCAACAGGGGGCTATTA pyrC pyrC pyrCp 1122643 reverse pyrC(1121561,1122607) pyrC(1121561,1122607) 1121561-1122643 1122607-1122643 GGCAAAAACATCCCTTCAGCCGGAGCATAGAGATTAA grxB grxB grxBp 1124103 reverse grxB(1123407,1124054) grxB(1123407,1124054) 1123407-1124103 1124054-1124103 CTGACTCCTTCATACTGAAAGTGAACTGACAGCCAAATGGAGGAGTCACG rimJ rimJ rimJp 1125522 forward rimJ(1125562,1126146) rimJ(1125562,1126146) 1125522-1126146 1125522-1125562 ACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAA flgAMN flgMN flgMp 1130165 reverse flgM(1129835,1130128) flgN(1129414,1129830) 1129414-1130165 1130128-1130165 AACACATGATAAAAGCGCCCTCAATGAGGAATAAACCA flgAMN flgAMN flgAp 1130885 reverse flgA(1130204,1130863) flgN(1129414,1129830) 1129414-1130885 1130863-1130885 GTAGAAATGGCTGGGGGCGAAAA flgBCDEFGHIJ flgBCDEFGHIJ flgBp 1130993 forward flgB(1131018,1131434) flgJ(1137371,1138312) 1130993-1138312 1130993-1131018 GAATTTTGATACCTGCGGAGGAGATA flgKLO flgK flgKp 1138351 forward flgK(1138378,1140021) flgO(1140986,1141063) 1138351-1141063 1138351-1138378 GTAATTGAAGGCTTATAAGGAACCTCCA rne rne rnep4 1144421 reverse rne(1141182,1144367) rne(1141182,1144367) 1141182-1144421 1144367-1144421 GCGTTACTTTGCCCGCAGCTTAGTCGTCAATGTAAGAATAATGAGTAAGTTACGA rne rne rnep1 1144728 reverse rne(1141182,1144367) rne(1141182,1144367) 1141182-1144728 1144367-1144728 GTTTCCGTGTCCATCCTTGTTAAAACAAGAAATTTTACGGAATAACCCATTTTGCCCGACCGATCATCCACGCAGCAATGGCGTAAGACGTATTGATCTTTCAGGCAGTTAGCGGGCTGCGGGTTGCAGTCCTTACCGGTAGATGGAAATATTTCTGGAGAGTAATACCCAGTCTGTTTCTTTGATAATTGCGCTGTTTTTCCGCATGAAAAACGGGCAACCGACACTCTGCGCCTCTTTGAGCTGACGATAACCGTGAGGTTGGCGACGCGACTAGACACGAGGCCATCGGTTCACACCCGGAAAGGCGTTACTTTGCCCGCAGCTTAGTCGTCAATGTAAGAATAATGAGTAAGTTACGA rne rne rnep2 1144762 reverse rne(1141182,1144367) rne(1141182,1144367) 1141182-1144762 1144367-1144762 GCTATAACAAGGCTTGCAGTGGAATAATGAGGCCGTTTCCGTGTCCATCCTTGTTAAAACAAGAAATTTTACGGAATAACCCATTTTGCCCGACCGATCATCCACGCAGCAATGGCGTAAGACGTATTGATCTTTCAGGCAGTTAGCGGGCTGCGGGTTGCAGTCCTTACCGGTAGATGGAAATATTTCTGGAGAGTAATACCCAGTCTGTTTCTTTGATAATTGCGCTGTTTTTCCGCATGAAAAACGGGCAACCGACACTCTGCGCCTCTTTGAGCTGACGATAACCGTGAGGTTGGCGACGCGACTAGACACGAGGCCATCGGTTCACACCCGGAAAGGCGTTACTTTGCCCGCAGCTTAGTCGTCAATGTAAGAATAATGAGTAAGTTACGA rne rne rnep3 1144873 reverse rne(1141182,1144367) rne(1141182,1144367) 1141182-1144873 1144367-1144873 GCACCTTATTACTTCACTGCGTGATCACTTTATTGATGGTTATTAAACCAATCACCAGCAAGAAGTGAAAAAACTGTGAGTAAGCGGGTGATAAATGGTAAAAGTCATCTTGCTATAACAAGGCTTGCAGTGGAATAATGAGGCCGTTTCCGTGTCCATCCTTGTTAAAACAAGAAATTTTACGGAATAACCCATTTTGCCCGACCGATCATCCACGCAGCAATGGCGTAAGACGTATTGATCTTTCAGGCAGTTAGCGGGCTGCGGGTTGCAGTCCTTACCGGTAGATGGAAATATTTCTGGAGAGTAATACCCAGTCTGTTTCTTTGATAATTGCGCTGTTTTTCCGCATGAAAAACGGGCAACCGACACTCTGCGCCTCTTTGAGCTGACGATAACCGTGAGGTTGGCGACGCGACTAGACACGAGGCCATCGGTTCACACCCGGAAAGGCGTTACTTTGCCCGCAGCTTAGTCGTCAATGTAAGAATAATGAGTAAGTTACGA sraB sraB psrDp 1146589 forward sraB(1146589,1146757) sraB(1146589,1146757) rho-independent(1146728,1146752) 1146589-1146752 1146589-1146589 T yceD-rpmF-plsX-fabHDG-acpP-fabF yceD-rpmF yceDp1 1146649 forward yceD(1146794,1147315) rpmF(1147367,1147540) 1146649-1147540 1146649-1146794 TTCGTTTTGCAGGTTGATGTTTGTTATCAGCACTGAACGAAAATAAAGCAGTAACCCGCAATGTGTGCGAATTATTGGCAAAAGGCAACCACAGGCTGCCTTTTTCTTTGACTCTATGACGTTACAAAGTTAATATGCGCGCCCTA yceD-rpmF-plsX-fabHDG-acpP-fabF yceD-rpmF yceDp2 1146791 forward yceD(1146794,1147315) rpmF(1147367,1147540) 1146791-1147540 1146791-1146794 CCTA yceD-rpmF-plsX-fabHDG-acpP-fabF rpmF-plsX-fabHDG rpmFp 1147338 forward rpmF(1147367,1147540) fabG(1150670,1151404) 1147338-1151404 1147338-1147367 GGATAAACCGTAATTGAGGAGTAAGGTCCA yceD-rpmF-plsX-fabHDG-acpP-fabF plsX-fabHDG plsXp 1147577 forward plsX(1147621,1148691) fabG(1150670,1151404) 1147577-1151404 1147577-1147621 CCCCAGGCAACTGGGGAAAGACCAAACCGGGCGGCGACGATACCT yceD-rpmF-plsX-fabHDG-acpP-fabF fabHDG fabHp 1148516 forward fabH(1148759,1149712) fabG(1150670,1151404) 1148516-1151404 1148516-1148759 GCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCGCGATTGAACAGGCAGTGCAGGCGGTGCAGCGACAAGTTCCTCAGCGAATTGCCGCTCGCCTGGAATCTGTATACCCAGCTGGTTTTGAGCTGCTGGACGGTGGCAAAAGCGGAACTCTGCGGTAGCAGGACGCTGCCAGCGAACTCGCAGTTTGCAAGTGACGGTATATAACCGAAAAGTGACTGAGCGTACA yceD-rpmF-plsX-fabHDG-acpP-fabF acpP-fabF acpPp 1151575 forward acpP(1151615,1151851) fabF(1151939,1153180) 1151575-1153180 1151575-1151615 AACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTA yceD-rpmF-plsX-fabHDG-acpP-fabF acpP acpPp 1151575 forward acpP(1151615,1151851) acpP(1151615,1151851) rho-independent(1151860,1151887) 1151575-1151887 1151575-1151615 AACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTA 1151851-1151887 AGTGAACATCTCCAGGCGGTCGTTCGACCGCCTGAGT ptsG ptsG ptsGp2 1157626 forward ptsG(1157869,1159302) ptsG(1157869,1159302) 1157626-1159302 1157626-1157869 GCCGAAAATTGGGCGGTGAATAACCACGTTTGAAATATTGTGACATATGTTTTGTCAAAATGTGCAACTTCTCCAATGATCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTACTCTGTGTAATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTA ptsG ptsG ptsGp1 1157766 forward ptsG(1157869,1159302) ptsG(1157869,1159302) 1157766-1159302 1157766-1157869 ATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTA fhuE fhuE fhuEp 1161647 reverse fhuE(1159362,1161551) fhuE(1159362,1161551) rho-independent(1159325,1159346) 1159325-1161647 1161551-1161647 TGCATTTACAAACAAAATTATTCGCACACTAAATATAATCGCTCATCACCCTCCTCCGGCATGAGCCTGACGACAACATAAACCAAGAGATTTCAAA 1159325-1159362 AATAACACCTGTAAAAAAGGCAGCCATCTGGCTGCCTT ndh ndh ndhp 1165992 forward ndh(1166085,1167389) ndh(1166085,1167389) 1165992-1167389 1165992-1166085 AAGAACATTTTCATTGCTGTAACCTGTTGTTAATTAAGAGCTATGTTAATAACCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGT comR comR comRp 1168844 reverse comR(1168200,1168832) comR(1168200,1168832) 1168200-1168844 1168832-1168844 TACAACGGCATCA bhsA bhsA bhsAp9 1169019 forward bhsA(1169073,1169330) bhsA(1169073,1169330) 1169019-1169330 1169019-1169073 ATCGATCGTTAAGTAATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTA bhsA ycfR bhsAp 1169033 forward bhsA(1169073,1169330) bhsA(1169073,1169330) 1169033-1169330 1169033-1169073 AATTGCTTGCGACGTCATTCATCTGCATAAGGCCACTATTA ldtC ldtC ldtCp 1170417 reverse ldtC(1169412,1170374) ldtC(1169412,1170374) 1169412-1170417 1170374-1170417 TATCTGTTTATTACAATAACCTTATATTTATTATGGATTTTTGG mfd mfd mfdp2 1173992 reverse mfd(1170518,1173964) mfd(1170518,1173964) 1170518-1173992 1173964-1173992 ATATCCTAACGAGAATCTGACAACCGTTA mfd mfd mfdp1 1174028 reverse mfd(1170518,1173964) mfd(1170518,1173964) 1170518-1174028 1173964-1174028 ATTGCTTATCAGAGATATGCCCCCATATGTTGAGGCATATCCTAACGAGAATCTGACAACCGTTA pepT pepT pepTp 1185823 forward pepT(1185844,1187070) pepT(1185844,1187070) 1185823-1187070 1185823-1185844 ACAAAAAGTGAGGGTGACTACA phoPQ phoQ phoQp5 1189940 reverse phoQ(1188316,1189776) phoQ(1188316,1189776) 1188316-1189940 1189776-1189940 AGCAAAGATTCGTTAATGCTCCAACTCTATCCGGATGCGGAGCTGCGGGAAAGCCATACCATTGATGTACTGATGGGACGTCTGCGCAAAAAAATTCAGGCACAATATCCCCAAGAAGTGATTACCACCGTTCGCGGCCAGGGCTATCTGTTCGAATTGCGCTGA phoPQ phoPQ phoPp1 1190483 reverse phoP(1189776,1190447) phoQ(1188316,1189776) 1188316-1190483 1190447-1190483 ACACTATTTTAATAATTAAGACAGGGAGAAATAAAAA phoPQ phoPQ phoPp3 1190491 reverse phoP(1189776,1190447) phoQ(1188316,1189776) 1188316-1190491 1190447-1190491 ATCGCGTTACACTATTTTAATAATTAAGACAGGGAGAAATAAAAA phoPQ phoPQ phoPp2 1190508 reverse phoP(1189776,1190447) phoQ(1188316,1189776) 1188316-1190508 1190447-1190508 ACCCCCATAACCACATAATCGCGTTACACTATTTTAATAATTAAGACAGGGAGAAATAAAAA hflD-purB hflD-purB hflDp 1192686 reverse hflD(1191990,1192631) purB(1190616,1191986) 1190616-1192686 1192631-1192686 GTCTGCCGCTGCCGGTCTGATTATTATCTTTACTTAAAACAAGGAAGCAGTGAACG icd icd icdAp2 1194961 forward icd(1195123,1196373) icd(1195123,1196373) 1194961-1196373 1194961-1195123 ATAACGCGCATCTTTCATGACGGCAAACAATAGGGTAGTATTGACAAGCCAATTACAAATCATTAACAAAAAATTGCTCTAAAGCATCCGTATCGCAGGACGCAAACGCATATGCAACGTGGTGGCAGACGAGCAAACCAGTAGCGCTCGAAGGAGAGGTGAA icd icd icdAp1 1195008 forward icd(1195123,1196373) icd(1195123,1196373) 1195008-1196373 1195008-1195123 GCCAATTACAAATCATTAACAAAAAATTGCTCTAAAGCATCCGTATCGCAGGACGCAAACGCATATGCAACGTGGTGGCAGACGAGCAAACCAGTAGCGCTCGAAGGAGAGGTGAA C0293 C0293 C0293p 1196711 forward C0293(1196711,1196782) C0293(1196711,1196782) 1196711-1196782 1196711-1196711 T iraM iraM iraMp1 1212090 reverse iraM(1211680,1212003) iraM(1211680,1212003) 1211680-1212090 1212003-1212090 GAGGGGGGGGTAATATACTCATATGCAAAATCAAGAAATAAACATCCTAATGAACCATATTAAATACCGTGGGATAAGACATAACAAA iraM iraM iraMp2 1212123 reverse iraM(1211680,1212003) iraM(1211680,1212003) 1211680-1212123 1212003-1212123 TATAAGCCATCATTTTAATTAATTTATTTTTTTGAGGGGGGGGTAATATACTCATATGCAAAATCAAGAAATAAACATCCTAATGAACCATATTAAATACCGTGGGATAAGACATAACAAA bluR bluR bluRp 1214113 reverse bluR(1213328,1214059) bluR(1213328,1214059) 1213328-1214113 1214059-1214113 AGTATTATTGGGTCGTGTACAGGCGACGGAGATTTGTGACCGCAAGGAGGAATTG bluF bluF bluFp 1215506 reverse bluF(1214264,1215475) bluF(1214264,1215475) 1214264-1215506 1215475-1215506 CTCTCGCCTCACCCATTACCCTGGATTGTTAA ycgZ-ymgA-ariR-ymgC ycgZ-ymgA-ariR-ymgC ycgZp 1215752 forward ycgZ(1215789,1216025) ymgC(1216748,1216996) 1215752-1216996 1215752-1215789 ACTTAACATTGATTAACATTTTTAACAGAGGCGTAGCA ycgZ-ymgA-ariR-ymgC ycgZ-ymgA-ariR-ymgC ycgZp2 1215752 forward ycgZ(1215789,1216025) ymgC(1216748,1216996) 1215752-1216996 1215752-1215789 ACTTAACATTGATTAACATTTTTAACAGAGGCGTAGCA ycgL ycgL ycgLp 1227609 forward ycgL(1227681,1228007) ycgL(1227681,1228007) 1227609-1228007 1227609-1227681 GGCATGGACTCAACAAACCGTAGAAATCTACAGCTGGCTGGCTTGTGGCGCGGGTTTCATTGATGTTAGCTTA hlyE hlyE hlyEp 1230466 reverse hlyE(1229483,1230394) hlyE(1229483,1230394) 1229483-1230466 1230394-1230466 GAAGTAAAATTTATTAATAGTTGTAAAACAGGAGTTTCATTACAATTTATATATTTAAAGAGGCGAATGATTA umuDC umuDC umuDp 1230738 forward umuD(1230767,1231186) umuC(1231186,1232454) 1230738-1232454 1230738-1230767 AAAAACAGTATAACTTCAGGCAGATTATTA fadR fadR fadRp1 1234905 forward fadR(1234938,1235657) fadR(1234938,1235657) rho-independent(1235677,1235698) 1234905-1235698 1234905-1234938 AACTTTGTTTTGCTGTGTTATGGAAATCTCACTA 1235657-1235698 ATCCCTTCCGTTTAAAGAGCAAACCCCTCAAACGAGGGGTTT fadR fadR fadRp2 1234916 forward fadR(1234938,1235657) fadR(1234938,1235657) rho-independent(1235677,1235698) 1234916-1235698 1234916-1234938 GCTGTGTTATGGAAATCTCACTA 1235657-1235698 ATCCCTTCCGTTTAAAGAGCAAACCCCTCAAACGAGGGGTTT ycgB ycgB ycgBp 1237285 reverse ycgB(1235709,1237241) ycgB(1235709,1237241) 1235709-1237285 1237241-1237285 GAGGTGCTCCACACAGAGAGCGCCGACAACAATGAGGTGCGCGTA dadAX dadAX dadAp1 1237509 forward dadA(1237571,1238869) dadX(1238879,1239949) 1237509-1239949 1237509-1237571 GAGTTATCAAGATGTGATTAGATTATTATTCTTTTACTGTATCTACCGTTATCGGAGTGGCTA dadAX dadAX dadAp2 1237525 forward dadA(1237571,1238869) dadX(1238879,1239949) 1237525-1239949 1237525-1237571 ATTAGATTATTATTCTTTTACTGTATCTACCGTTATCGGAGTGGCTA dadAX dadAX dadAp3 1237538 forward dadA(1237571,1238869) dadX(1238879,1239949) 1237538-1239949 1237538-1237571 TCTTTTACTGTATCTACCGTTATCGGAGTGGCTA ycgR ycgR ycgRp 1244556 reverse ycgR(1243793,1244527) ycgR(1243793,1244527) 1243793-1244556 1244527-1244556 GACAGTTTGTCAGTCAGGAGTTTTTCCGCG treA treA treAp 1247425 reverse treA(1245679,1247376) treA(1245679,1247376) 1245679-1247425 1247376-1247425 CTGATACTTGAATACCGTTTTATTCGGTTTCGCCAAAGGAGAATGATTGA dhaKLM dhaKLM dhaKp 1250944 reverse dhaK(1249768,1250838) dhaM(1247696,1249114) 1247696-1250944 1250838-1250944 TAATTTTCTTTTCCCTTGCCTGATGCACAATGGATTCATCGGCAGTCAGTGGTCGCCGTGTCGTTGAACATCATCCATGCCCTACCGTAATTGCTGGAGCAAAATAA dhaR dhaR dhaRp 1251003 forward dhaR(1251066,1252985) dhaR(1251066,1252985) 1251003-1252985 1251003-1251066 TTTACGTGTATTAATACTTAAAATTGCGAGCCGGAACACCTTTTGTCATAAGGGATGCGGGATA pth-ychF ychF ychFp 1257882 reverse ychF(1256721,1257812) ychF(1256721,1257812) 1256721-1257882 1257812-1257882 AGTTATTTCCATTTCTGCAATCTGTTAGCAATAACAGGTTGATTATTAAGATATTAAGGTGATTTAAATCA pth-ychF pth-ychF pthp 1258542 reverse pth(1257929,1258513) ychF(1256721,1257812) 1256721-1258542 1258513-1258542 AGTTATGTACACACTCAGGACAAAAAAACG ychH ychH ychHp 1258738 forward ychH(1258791,1259069) ychH(1258791,1259069) 1258738-1259069 1258738-1258791 ATAAGGAAGAGGGGTATTCCCTGTTACAACCCAGAAAGTTCCGGAGGTGACATA lolB-ispE-prs prs prsp 1262177 reverse prs(1260928,1261875) prs(1260928,1261875) rho-independent(1260895,1260909) 1260895-1262177 1261875-1262177 CGTCGCGCCTGACTGGGACAGGGGCCTGTGTCTTTGCTGAATTTGATACAGAGTCTGAAGCCCGCCAGGTGCTAGAGCAAGCCCCGGAATGGCTCAATGGCTTTGTGGCGAAAGGCGCTAATCTTTCCCCATTGCACAGAGCCATGCTTTAAGCCGGGCAAGCTGAGTTTCGGTGACAACGTCACCTTGTTCCAGACGTTGCATCGCGCTCTTTAATACACCGCCTGGAAAGGATCATGCCTGGCCCGCACAGTTTTCGGCAGATTCTTTCCACCAATGGACGCATGCCTGAGGTTCTTCTCG 1260895-1260928 ATCGAACCCGGCTCAAAGACCCGCTGCGGCGGGT lolB-ispE-prs lolB-ispE-prs lolBp 1263556 reverse lolB(1262877,1263500) prs(1260928,1261875) rho-independent(1260895,1260909) 1260895-1263556 1263500-1263556 GTAACGCTAGCATTAAGGGTTATAACTGCAACGTATCTCAAGGACTTGTCATCACTA 1260895-1260928 ATCGAACCCGGCTCAAAGACCCGCTGCGGCGGGT hemA-prfA-prmC hemA hemAp2 1263583 forward hemA(1263714,1264970) hemA(1263714,1264970) 1263583-1264970 1263583-1263714 GTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACA hemA-prfA-prmC hemA-prfA-prmC hemAp1 1263676 forward hemA(1263714,1264970) prmC(1266094,1266927) 1263676-1266927 1263676-1263714 GACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACA ychQA-kdsA ychQA-kdsA ychQp 1266899 forward ychQ(1266924,1267316) kdsA(1268165,1269019) rho-independent(1269039,1269067) 1266899-1269067 1266899-1266924 GCGTAACGCTCGGCCGCTATTATCAA 1269019-1269067 ATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTT ychQA-kdsA kdsA kdsAp 1267854 forward kdsA(1268165,1269019) kdsA(1268165,1269019) rho-independent(1269039,1269067) 1267854-1269067 1267854-1268165 GTAATCCGCAAATTGCTGGATACACTCAAAGCCTCGTTGATGGAAGAAAATCAGATGGAGCTGGCGTTACGCACCAGCGAAGCTTTATTACAATTCAACCCTGAAGATCCCTATGAAATTCGCGATCGCGGGTTGATTTATGCGCAACTGGATTGCGAACACGTTGCGTTGAACGATTTAAGTTATTTCGTTGAACAGTGTCCGGAAGACCCGATCAGCGAAATGATCCGTGCGCAAATAAATAACATCGCGCATAAACATATTGTGCTGCATTAATTAATCGACATTTTACTCAAGATTAAGGCGATCCTA 1269019-1269067 ATCTTTTTTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTT chaBC chaC chaCp 1272422 forward chaC(1272507,1273202) chaC(1272507,1273202) 1272422-1273202 1272422-1272507 TTAGTGGTTTCAAAATGAGCAGTAAAAATGTCCGGAAGACACCAAAAAGTTGTCGCAGGGAAGTATGCAGTGGCGGAAGTGTAAGG ychO ychO ychOp 1273760 forward ychO(1273784,1275178) ychO(1273784,1275178) 1273760-1275178 1273760-1273784 TTATTACCGGAAGTTACCGACGTTT narXL narXL narXp 1277777 reverse narX(1275822,1277618) narL(1275179,1275829) 1275179-1277777 1277618-1277777 CTTACCGATGTAAAGCGACTAACCACACGGCAAATAAGGAGTAACTCTTTCCGGGTATGGGTATACTTCAGCCAATAGCCGAGAATACTGCCATTCCAGAATGTATCGTCACATTCATTAAGGTTATTGCTCATTTAAAGCCTGAAGGAAGAGGTTTACA narKS narK narKp2 1277821 forward narK(1277957,1279348) narS(1279337,1279520) 1277821-1279520 1277821-1277957 GAAGTCACTGTACTCACTATGGGTAATGATAAATATCAATGATAGATAAAGTTATCTTATCGTTTGATTTACATCAAATTGCCTTTAGCTACAGACACTAAGGTGGCAGACATCGAAACGAGTATCAGAGGTGTCTA narKS narK narKp1 1277932 forward narK(1277957,1279348) narS(1279337,1279520) 1277932-1279520 1277932-1277957 ATCGAAACGAGTATCAGAGGTGTCTA narGHJI narGHJI narGp 1279807 forward narG(1279864,1283607) narI(1285849,1286526) rho-independent(1286525,1286579) 1279807-1286579 1279807-1279864 AAACATTAGCAATGTCGATTTATCAGAGGGCCGACAGGCTCCCACAGGAGAAAACCGA 1286526-1286579 AGCGAATTTTAGTTCACATAGACCCTGCTTCGGCGGGGTTTTTTTATGGGCACG tyrTV-tpr tyrTV-tpr tyrTp 1287665 reverse tyrT(1287538,1287622) tpr(1287087,1287176) rho-dependent(1287009,1287033) 1287009-1287665 1287622-1287665 GCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTG 1287009-1287087 AGTAATCCTTCCCCCACCACCATCACTTTCAAAAGTCCCTGAACTCTCAAGCGAATCCGCAATCAAATATTCTGCCCAT ychJ-purU purU purUp 1288754 reverse purU(1287782,1288624) purU(1287782,1288624) 1287782-1288754 1288624-1288754 GGTACACGTCCGCAGTTTGGTCGCAACGATCCCTGCCCTTGTGGTTCAGGTAAAAAATTTAAAAAGTGCTGCGGCCAATAATGGTTGACGGTACGGTTTAGCAAACACTCTCAACAAGGTTTTTCCAGCAA rssAB rssAB rssAp 1289106 forward rssA(1289245,1290150) rssB(1290242,1291255) 1289106-1291255 1289106-1289245 ACTACCACAGGGACAAAGCTGAGACACAAATAATCTCCCTGGAAACAATAACGGCGTATTAACCGCCTGAGTAGCACTATGTTAACCGAGCAGTAGCGATGTGGCTACGATTGCATTCCAGGGGAATCTTGCGGGAATAA ychJ-purU ychJ-purU ychJp 1289177 reverse ychJ(1288674,1289132) purU(1287782,1288624) 1287782-1289177 1289132-1289177 ACTCAGGCGGTTAATACGCCGTTATTGTTTCCAGGGAGATTATTTG rssAB rssB rssBp 1290220 forward rssB(1290242,1291255) rssB(1290242,1291255) 1290220-1291255 1290220-1290242 AAAGCCAGTCAGGGGAGAGAACA galU galU galUp 1291405 forward galU(1291457,1292365) galU(1291457,1292365) 1291405-1292365 1291405-1291457 CGATACAGAAATATGAACACGTTCAAAACACGAACAGTCCAGGAGAATTTAAA hns hns hnsp 1292958 reverse hns(1292509,1292922) hns(1292509,1292922) rho-independent(1292461,1292485) 1292461-1292958 1292922-1292958 AACAAACCACCCCAATATAAGTTTGAGATTACTACAA 1292461-1292509 ATCTTTTGTAGATTGCACTTGCTTAAAATCCCGCCAGCGGCGGGATTTT adhE adhE adhEp2 1298309 reverse adhE(1295446,1298121) adhE(1295446,1298121) 1295446-1298309 1298121-1298309 GCCACCTGGAAGTGACGCATTAGAGATAATAACTCTAATGTTTAAACTCTTTTAGTAAATCACAGTGAGTGTGAGCGCGAGTAAGCTTTTGATTTTCATAGGTTAAGCAAATCATCACCGCACTGACTATACTCTCGTATTCGAGCAGATGATTTACTAAAAAAGTTTAACATTATCAGGAGAGCATTA adhE adhE adhEp1 1298413 reverse adhE(1295446,1298121) adhE(1295446,1298121) 1295446-1298413 1298121-1298413 ACTGTTAGCTATAATGGCGAAAAGCGATGCTGAAAGGTGTCAGCTTTGCAAAAATTTGATTTGGATCACGTAATCAGTACCCAGAAGTGAGTAATCTTGCTTACGCCACCTGGAAGTGACGCATTAGAGATAATAACTCTAATGTTTAAACTCTTTTAGTAAATCACAGTGAGTGTGAGCGCGAGTAAGCTTTTGATTTTCATAGGTTAAGCAAATCATCACCGCACTGACTATACTCTCGTATTCGAGCAGATGATTTACTAAAAAAGTTTAACATTATCAGGAGAGCATTA adhE adhE adhEp 1298413 reverse adhE(1295446,1298121) adhE(1295446,1298121) 1295446-1298413 1298121-1298413 ACTGTTAGCTATAATGGCGAAAAGCGATGCTGAAAGGTGTCAGCTTTGCAAAAATTTGATTTGGATCACGTAATCAGTACCCAGAAGTGAGTAATCTTGCTTACGCCACCTGGAAGTGACGCATTAGAGATAATAACTCTAATGTTTAAACTCTTTTAGTAAATCACAGTGAGTGTGAGCGCGAGTAAGCTTTTGATTTTCATAGGTTAAGCAAATCATCACCGCACTGACTATACTCTCGTATTCGAGCAGATGATTTACTAAAAAAGTTTAACATTATCAGGAGAGCATTA oppABCDF oppABCDF oppAp 1301085 forward oppA(1301182,1302813) oppF(1305764,1306768) 1301085-1306768 1301085-1301182 CTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAA oppABCDF oppBCDF oppBp 1302806 forward oppB(1302899,1303819) oppF(1305764,1306768) 1302806-1306768 1302806-1302899 AGCACTAATGGCAATACGTGGGGCAGGAGTGTCCTGCTCCACGGTGTCTGATTTTTATCGCATTACAGAAGGCACAGGCCAGAAGGTAGGGCAA clsA-yciU clsA-yciU clsAp 1308673 reverse clsA(1307185,1308645) yciU(1306821,1307150) 1306821-1308673 1308645-1308673 AATGCGCTTTCAAAAGGATTTCTAATCTA yciI yciI yciIp 1310892 reverse yciI(1310569,1310865) yciI(1310569,1310865) 1310569-1310892 1310865-1310892 AACTTTCCCGAACAAGGAGTTGTGCCCG tonB tonB tonBp 1311054 forward tonB(1311089,1311808) tonB(1311089,1311808) rho-independent(1311815,1311846) 1311054-1311846 1311054-1311089 GACCTGGTTTTTCTACTGAAATGATTATGACTTCAA 1311808-1311846 AGCAGAAAGTCAAAAGCCTCCGACCGGAGGCTTTTGACT yciCB yciCB yciCp 1313698 reverse yciC(1312920,1313663) yciB(1312351,1312890) rho-independent(1312261,1312300) 1312261-1313698 1313663-1313698 CTAATTAACACCTGCATAAAACTCAAGGAGAGTGCA 1312261-1312351 ACCAGACTGCCAGTCCTTCGGGGCTGGCGCTGTATCTCCTCTGTTCTCCTCAGGAAAATCATAGTAGCATCGCGCCTGTGATTTTCCTTTT ompW ompW ompWp 1313991 forward ompW(1314020,1314658) ompW(1314020,1314658) 1313991-1314658 1313991-1314020 GTTTTTATAACCATAACGACGGAGCGGATA yciGFE yciE yciEp 1315396 reverse yciE(1314718,1315224) yciE(1314718,1315224) rho-independent(1314668,1314698) 1314668-1315396 1315224-1315396 ACAATTAGGTTACCGTAAAGCAGCGAAGCTTCTGAAAGAAACCCTGGAAGAAGAAAAGGCCACCGACATCAAACTGACTGATCTGGCCATTAATAACGTAAATAAGAAAGCCGAAAATAAAGCCTGAAATATGAATTTTAACTTTTAGTCATTTTATAAAGAGGACATTTTCA 1314668-1314718 ATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTCGTTTT yciGFE yciGFE yciGp 1316092 reverse yciG(1315856,1316035) yciE(1314718,1315224) rho-independent(1314668,1314698) 1314668-1316092 1316035-1316092 GTGTCGACACACAACACTCATATTAATGAAACAATGCAACGCAACGGGAGAAATAACA 1314668-1314718 ATACCCTTTATACCATGTCCTTATTGACCCCGTATATTACGGGGTCGTTTT yciGFE yciG yciGp 1316092 reverse yciG(1315856,1316035) yciG(1315856,1316035) rho-independent(1315785,1315815) 1315785-1316092 1316035-1316092 GTGTCGACACACAACACTCATATTAATGAAACAATGCAACGCAACGGGAGAAATAACA 1315785-1315856 ATTCACCGTTAATTATTAATATCAGCTGATAAAGATAATTGCATCTGCGGGCCGTATGGCTCGCAGTGATTT trpLEDCBA trpCBA trpCp 1319944 reverse trpC(1318427,1319788) trpA(1316416,1317222) 1316416-1319944 1319788-1319944 GACGCCGCCCATGAAGCAGCCGTCGCTGCGAACGTCGCCATGTTAATGCGCCTGCATGGCCATGAAGATCTGCAAGCCAATGCGCAAACCGTTCTTGAGGTACTGCGCAGTGGTTCCGCTTACGACAGAGTCACCGCACTGGCGGCACGAGGGTAAA trpLEDCBA trpLEDCBA trpLp 1323108 reverse trpL(1323038,1323082) trpA(1316416,1317222) rho-independent(1316383,1316408) 1316383-1323108 1323082-1323108 AAGTTCACGTAAAAAGGGTATCGACAA 1316383-1316416 ATCCCACAGCCGCCAGTTCCGCTGGCGGCATTTT trpLEDCBA trpL trpLp 1323108 reverse trpL(1323038,1323082) trpL(1323038,1323082) rho-independent(1322975,1322995) 1322975-1323108 1323082-1323108 AAGTTCACGTAAAAAGGGTATCGACAA 1322975-1323038 AAACGGGCAGTGTATTCACCATGCGTAAAGCAATCAGATACCCAGCCCGCCTAATGAGCGGGCT yciVOQ yciVOQ yciVp 1323188 forward yciV(1323220,1324101) yciQ(1324746,1326641) 1323188-1326641 1323188-1323220 GCAAAAAACATTATCCAGAACGGGAGTGCGCCT sohB sohB sohBp1 1329284 forward sohB(1329332,1330381) sohB(1329332,1330381) 1329284-1330381 1329284-1329332 CTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCG sohB sohB sohBp 1329284 forward sohB(1329332,1330381) sohB(1329332,1330381) 1329284-1330381 1329284-1329332 CTGTTGTAAACTGTGAGCCAAAGCGTTGTTTAACCAAGGTGGGGACTCG sohB sohB sohBp2 1329301 forward sohB(1329332,1330381) sohB(1329332,1330381) 1329301-1330381 1329301-1329332 CCAAAGCGTTGTTTAACCAAGGTGGGGACTCG topA topA topAp5 1330789 forward topA(1331048,1333645) topA(1331048,1333645) 1330789-1333645 1330789-1331048 GTATCGGATTTTATCAGGTACAGTGTGACGCTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATA topA topA topAp 1330789 forward topA(1331048,1333645) topA(1331048,1333645) 1330789-1333645 1330789-1331048 GTATCGGATTTTATCAGGTACAGTGTGACGCTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATA topA topA topAp4 1330818 forward topA(1331048,1333645) topA(1331048,1333645) 1330818-1333645 1330818-1331048 GCTTTCGTCAATCTGGCAATAGATTTGCTTGACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATA topA topA topAp3 1330848 forward topA(1331048,1333645) topA(1331048,1333645) 1330848-1333645 1330848-1331048 GACATTCGACCAAAATTCCGTCGTGCTATAGCGCCTGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATA topA topA topAp2 1330883 forward topA(1331048,1333645) topA(1331048,1333645) 1330883-1333645 1330883-1331048 TGTAGGCCAAGACCTGTTAACTCAGTCACCTGAATTTTCGTGAACAGAGTCACGACAAGGGGTTGATATCCGCAGAGAGCGAGTCCATATCGGTAACTCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATA topA topA topAp1 1330980 forward topA(1331048,1333645) topA(1331048,1333645) 1330980-1333645 1330980-1331048 TCGTTGCCAGTGGAAGGTTTATCAACGTGCGACGCATTCCTGGAAGAATCAAATTAGGTAAGGTGAATA cysB cysB cysBp 1333788 forward cysB(1333855,1334829) cysB(1333855,1334829) rho-independent(1334845,1334874) 1333788-1334874 1333788-1333855 GTATTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACA 1334829-1334874 ATTTCTTGCGTTATTTTCGGCACCTTTTATGTAGCGAAGGTGCCGG ymiA-yciX ymiA-yciX ymiAp 1335090 forward ymiA(1335148,1335288) yciX(1335291,1335458) 1335090-1335458 1335090-1335148 ATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATA ymiC-acnA acnA acnAp1 1335424 forward ymiC(1335572,1335667) acnA(1335831,1338506) 1335424-1338506 1335424-1335572 AACTGTTTGCTGAAGATGATCAGCCGAAACAATAATTATCATCATTCTTATTACCCATTTTTAATGAATTAAAGGGCTTTTAATACACCGCAGCAATAACAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTA ymiC-acnA acnA ymiCp 1335424 forward ymiC(1335572,1335667) acnA(1335831,1338506) 1335424-1338506 1335424-1335572 AACTGTTTGCTGAAGATGATCAGCCGAAACAATAATTATCATCATTCTTATTACCCATTTTTAATGAATTAAAGGGCTTTTAATACACCGCAGCAATAACAGCTTGAGTTATCTCAACACAAAATAATAACCGTTAAGGGTGTAGCCTA ymiC-acnA acnA acnAp2 1335781 forward acnA(1335831,1338506) acnA(1335831,1338506) 1335781-1338506 1335781-1335831 TCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTA ymiC-acnA acnA acnAp3 1335827 forward acnA(1335831,1338506) acnA(1335831,1338506) 1335827-1338506 1335827-1335831 AGCTA ribA ribA ribAp1 1339190 reverse ribA(1338570,1339160) ribA(1338570,1339160) rho-independent(1338512,1338548) 1338512-1339190 1339160-1339190 ATACAGAACCAGCATTATCTGGAGAATTTCA 1338512-1338570 ACCCTCTTGCATTGTGTAATTCATTTGCTTGCCGGAAGCAAAATAACCGGCAAGCAAAT ribA ribA ribAp2 1339234 reverse ribA(1338570,1339160) ribA(1338570,1339160) rho-independent(1338512,1338548) 1338512-1339234 1339160-1339234 GTCGTGATTAGGTGAACCCCTTCTCGTTATGGCAAAATAAGCCAATACAGAACCAGCATTATCTGGAGAATTTCA 1338512-1338570 ACCCTCTTGCATTGTGTAATTCATTTGCTTGCCGGAAGCAAAATAACCGGCAAGCAAAT pgpB pgpB pgpBp 1339309 forward pgpB(1339330,1340094) pgpB(1339330,1340094) 1339309-1340094 1339309-1339330 ACTTATCAAAAAGGAGAGGCCA lapAB-pyrF-yciH lapAB lapAp1 1340135 forward lapA(1340243,1340551) lapB(1340558,1341727) 1340135-1341727 1340135-1340243 AATGCGTGTGGATGCCATTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATG lapAB-pyrF-yciH yciSM-pyrF-yciH lapAp1 1340135 forward lapA(1340243,1340551) yciH(1342658,1342984) 1340135-1342984 1340135-1340243 AATGCGTGTGGATGCCATTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATG lapAB-pyrF-yciH lapAB lapAp 1340135 forward lapA(1340243,1340551) lapB(1340558,1341727) 1340135-1341727 1340135-1340243 AATGCGTGTGGATGCCATTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATG lapAB-pyrF-yciH yciSM-pyrF-yciH lapAp 1340135 forward lapA(1340243,1340551) yciH(1342658,1342984) 1340135-1342984 1340135-1340243 AATGCGTGTGGATGCCATTTCGCAGACGGCGCGAAAATGGTACTTTAAAGGGCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATG lapAB-pyrF-yciH lapAB lapAp2 1340186 forward lapA(1340243,1340551) lapB(1340558,1341727) 1340186-1341727 1340186-1340243 GCTATTGCGGTAAGTTGACCATAATTTATTCGCTCTAACCACATAACGGGAAGTAATG lapAB-pyrF-yciH pyrF-yciH pyrFp 1341870 forward pyrF(1341921,1342658) yciH(1342658,1342984) 1341870-1342984 1341870-1341921 GTTTACCTGTTTCGCGCCACTTCCGGTGCCCATCATCAAGAAGGTCTGGTCA osmB osmB osmBp2 1343369 reverse osmB(1343110,1343328) osmB(1343110,1343328) 1343110-1343369 1343328-1343369 AGAGCTTACTTCCGTGAATCATAAATTCAGGAGAGAGTATTA osmB osmB osmBp 1343369 reverse osmB(1343110,1343328) osmB(1343110,1343328) 1343110-1343369 1343328-1343369 AGAGCTTACTTCCGTGAATCATAAATTCAGGAGAGAGTATTA osmB osmB osmBp1 1343476 reverse osmB(1343110,1343328) osmB(1343110,1343328) 1343110-1343476 1343328-1343476 CAGCGATATAACAGGAAGTCATTATCACCTGCGTGATATAACCCTGCGCGCGAGCAGATTTCACGGAATAATTTCACCAGACTTATTCTTAGCTATTATAGTTATAGAGAGCTTACTTCCGTGAATCATAAATTCAGGAGAGAGTATTA yciZT yciT yciTp 1344510 reverse yciT(1343597,1344346) yciT(1343597,1344346) 1343597-1344510 1344346-1344510 ATACTTAAAGCAGAACTCTTGCGCCAGGTTGCTGAATCTACGCCAGACATCCCGAAGGCACCGTGGGAGATTTAACAATCGTGCCTTCAGGTTTTCCTATTTGAGGATGCCCGGCGCGTCAGTATTTTTTTATTAAGTATTATAACGTTATAAGAATTACAGCGA yciZT yciZT yciZp 1344638 reverse yciZ(1344436,1344609) yciT(1343597,1344346) 1343597-1344638 1344609-1344638 TTCCCCCTTTTGCTATAAGGATGTCCTTGA pdeR pdeR pdeRp 1346843 reverse pdeR(1344757,1346742) pdeR(1344757,1346742) 1344757-1346843 1346742-1346843 TATAAAAAAAACAATGCGTTTAGCCGCCGTTAATTTCATGTAAGTCATGTTGTTCCTTTTATTTAACCGCGGACTCCGCTGTTAACCGGAGGATATGCATCA rnb rnb rnbp2 1348944 reverse rnb(1346978,1348912) rnb(1346978,1348912) rho-independent(1346942,1346968) 1346942-1348944 1348912-1348944 AGCCGCTCTAATGGCCACCAAAATAGACAATTA 1346942-1346978 ATCTCCTTTCACGGCCCATTCCTCATGGATGGGCCGT rnb rnb rnbp1 1349129 reverse rnb(1346978,1348912) rnb(1346978,1348912) rho-independent(1346942,1346968) 1346942-1349129 1348912-1349129 ACCCGAGCACCCGATCGCTTTAGCGCCGCCCAGTTCAGCCCTTTACTCGAACACGAAAAATCATCAACGCAGATTATTAATCTGCTGGTATGGAGCGGGCTGTGTGGCTGGATAAATCGCTTAAAAATCGCGTTGGGTGAGACATATTAACCTTGCCGCGTCAGACAGATTCGCGTAAAACTGTCAGCCGCTCTAATGGCCACCAAAATAGACAATTA 1346942-1346978 ATCTCCTTTCACGGCCCATTCCTCATGGATGGGCCGT yciW yciW yciWp 1350132 reverse yciW(1348980,1350107) yciW(1348980,1350107) 1348980-1350132 1350107-1350132 TTTCCTTTACGACCAAGGAGCGCCCA fabI fabI fabIp1 1351118 reverse fabI(1350251,1351039) fabI(1350251,1351039) 1350251-1351118 1351039-1351118 ATCTGTTCGTACTGTTTACTAAAACGACGAATCGCCTGATTTTCAGGCACAACAAGCATCAACAATAAGGATTAAAGCTA fabI fabI fabIp 1351121 reverse fabI(1350251,1351039) fabI(1350251,1351039) 1350251-1351121 1351039-1351121 TTTATCTGTTCGTACTGTTTACTAAAACGACGAATCGCCTGATTTTCAGGCACAACAAGCATCAACAATAAGGATTAAAGCTA puuA-ymjE-puuP puuP puuPp 1359373 reverse ymjE(1359177,1359341) puuP(1357802,1359187) 1357802-1359373 1359341-1359373 AACGATTAAGACTGTGACGAGGAAATGAGATGA puuA-ymjE-puuP puuAP puuAp 1360968 reverse puuA(1359490,1360908) puuP(1357802,1359187) 1357802-1360968 1360908-1360968 GGTGGTCATTATATTTTACGCTTTGATAACGAGCGGAAAACAAACCAAAGGCGAAGAATCA puuDRCBE puuDRCBE puuDp 1361052 forward puuD(1361120,1361884) puuE(1365550,1366815) 1361052-1366815 1361052-1361120 ATATTGAACATAAAGGTCATTTAAAGCGCAGTAATGGCGATAATTTAGTCCACTTTGTGAGATTGAGCA puuDRCBE puuCBE puuCp 1362728 forward puuC(1362743,1364230) puuE(1365550,1366815) 1362728-1366815 1362728-1362743 GAAACAGGAGTCATAA pspF pspF pspFp2 1367929 reverse pspF(1366935,1367912) pspF(1366935,1367912) rho-independent(1366818,1366913) 1366818-1367929 1367912-1367929 AAGTGGCGAATTTCATCA 1366818-1366935 GCGAAGTTGAGCAATACAACTTGCCGGATGCGGCGTGAATGCTTTATTCGGCATACATAATCAATACGTCGTTTGCAGGCCTGATAAGCGCAGCGCATCAGACATTATTGCGTTGGGC pspF pspF pspFp1 1367945 reverse pspF(1366935,1367912) pspF(1366935,1367912) rho-independent(1366818,1366913) 1366818-1367945 1367912-1367945 AGCGAATTACACTAACAAGTGGCGAATTTCATCA 1366818-1366935 GCGAAGTTGAGCAATACAACTTGCCGGATGCGGCGTGAATGCTTTATTCGGCATACATAATCAATACGTCGTTTGCAGGCCTGATAAGCGCAGCGCATCAGACATTATTGCGTTGGGC pspABCDE pspABCDE pspAp 1368038 forward pspA(1368079,1368747) pspE(1369689,1370003) 1368038-1370003 1368038-1368079 AGCAGGACAATCCTGAACGCAGAAATCAAGAGGACAACATTA pspF pspF pspFp3 1368040 reverse pspF(1366935,1367912) pspF(1366935,1367912) rho-independent(1366818,1366913) 1366818-1368040 1367912-1368040 GCTGAACTGTTAATACAATTTGCGTGCCAATTTTTTATCTTTTTGATTTATAAAGATCTGATTGAAGAATCAACAGCAACATGCCAGGATGAGTTAGCGAATTACACTAACAAGTGGCGAATTTCATCA 1366818-1366935 GCGAAGTTGAGCAATACAACTTGCCGGATGCGGCGTGAATGCTTTATTCGGCATACATAATCAATACGTCGTTTGCAGGCCTGATAAGCGCAGCGCATCAGACATTATTGCGTTGGGC ycjXF-tyrR ycjXF-tyrR ycjXp 1384069 forward ycjX(1384117,1385514) tyrR(1386720,1388261) 1384069-1388261 1384069-1384117 CCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAA ycjXF-tyrR tyrR tyrRp 1386692 forward tyrR(1386720,1388261) tyrR(1386720,1388261) rho-independent(1388267,1388301) 1386692-1388301 1386692-1386720 ATTGTTCTTTTTTCAGGTGAAGGTTCCCA 1388261-1388301 AGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATT tpx tpx tpxp 1388844 reverse tpx(1388305,1388811) tpx(1388305,1388811) 1388305-1388844 1388811-1388844 GACGTTAACTATATGTAAACAGGAAAGATAATCA ycjG ycjG ycjGp 1388874 forward ycjG(1388930,1389895) ycjG(1388930,1389895) 1388874-1389895 1388874-1388930 ACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAGGAGTAAAGA ycjY-ymjDC-mpaA ycjY ycjYp6 1392072 reverse ycjY(1390933,1391853) ycjY(1390933,1391853) 1390933-1392072 1391853-1392072 GGCGGGCTGCTGCACGAGTGAAGCTACGCTCCTCTGCAACGACGACAAACGCCATCAGATCAGCGATTTCTTCACGCTTCATTCAGTATCTCCATGCAATCTATTAATCATTTAAATGATAGGTCTAATCATGATTTTGGGTCTAATCAACTTAATGATCAATATCTATAGTGATATCACCAACCGTTAAAACGAACCGACAACTCCATGAGGAACGGAA ycjY-ymjDC-mpaA ycjY-ymjDC-mpaA ycjYp6 1392072 reverse ycjY(1390933,1391853) mpaA(1389870,1390598) 1389870-1392072 1391853-1392072 GGCGGGCTGCTGCACGAGTGAAGCTACGCTCCTCTGCAACGACGACAAACGCCATCAGATCAGCGATTTCTTCACGCTTCATTCAGTATCTCCATGCAATCTATTAATCATTTAAATGATAGGTCTAATCATGATTTTGGGTCTAATCAACTTAATGATCAATATCTATAGTGATATCACCAACCGTTAAAACGAACCGACAACTCCATGAGGAACGGAA ynaI ynaI ynaIp 1395973 reverse ynaI(1394891,1395922) ynaI(1394891,1395922) 1394891-1395973 1395922-1395973 GCCAGGGGTTTCCGGCATGACGACAATTATCTGGAGGAGCCTGATAAAACAA uspE uspE uspEp 1398659 reverse uspE(1397672,1398622) uspE(1397672,1398622) 1397672-1398659 1398622-1398659 ACAAACTGCGTTGACAGTTGTTGTAAGGAGACCCTGTA fnr fnr fnrp 1399552 reverse fnr(1398774,1399526) fnr(1398774,1399526) 1398774-1399552 1399526-1399552 ATATCAATTACGGCTTGAGCAGACCTA abgABT-ogt ogt ogtp 1400284 reverse ogt(1399721,1400236) ogt(1399721,1400236) 1399721-1400284 1400236-1400284 TGCCGATAGGTCCGGGTATTTACCCACGTTTGTCTTAAGAGAGAACGGA mcaS mcaS mcaSp 1405751 reverse mcaS(1405658,1405751) mcaS(1405658,1405751) 1405658-1405751 1405751-1405751 A zntB zntB zntBp 1408024 forward zntB(1408050,1409033) zntB(1408050,1409033) 1408024-1409033 1408024-1408050 AATAATGCGTTGATGATGGAGGCACTG fnrS fnrS fnrSp 1409129 forward fnrS(1409129,1409250) fnrS(1409129,1409250) rho-independent(1409217,1409249) 1409129-1409249 1409129-1409129 G ralA ralA ralAp 1413556 forward ralA(1413556,1413734) ralA(1413556,1413734) rho-independent(1413702,1413724) 1413556-1413724 1413556-1413556 G uspF uspF uspFp 1435641 reverse uspF(1435185,1435619) uspF(1435185,1435619) 1435185-1435641 1435619-1435641 GGATACTAAAACAGGAGGTTTTA ydbK-ompN ompN ompNp 1437013 reverse ompN(1435760,1436893) ompN(1435760,1436893) 1435760-1437013 1436893-1437013 AAGGTTTTACTTAAGGCGTAACAAATGATATTTATCGGCTAACTGAACTTCTCCTTTAGGATGTTTTCACTCCCCGAAATGGGGATAAAAGGCAAATAAAATAACTAAAGGATTTATTCAA micC micC micCp 1437121 forward micC(1437121,1437231) micC(1437121,1437231) 1437121-1437231 1437121-1437121 G ydbK-ompN ydbK ydbKp 1440831 reverse ydbK(1437260,1440784) ydbK(1437260,1440784) 1437260-1440831 1440784-1440831 CGCAGCAATTTCGTGCGCCCCTCATTTGCGCAATGTAAGGGTGTCATA ydbK-ompN ydbK-ompN ydbKp 1440831 reverse ydbK(1437260,1440784) ompN(1435760,1436893) 1435760-1440831 1440784-1440831 CGCAGCAATTTCGTGCGCCCCTCATTTGCGCAATGTAAGGGTGTCATA ydbK-ompN ydbK-ompN ydbKp4 1440846 reverse ydbK(1437260,1440784) ompN(1435760,1436893) 1435760-1440846 1440784-1440846 GATTACTACTGGGCGCGCAGCAATTTCGTGCGCCCCTCATTTGCGCAATGTAAGGGTGTCATA ydbJ ydbJ ydbJp 1441029 forward ydbJ(1441058,1441324) ydbJ(1441058,1441324) 1441029-1441324 1441029-1441058 GTTTGGCTTGAAGATCAGAGGAAGAAAAGA hslJ hslJ hslJp 1441780 reverse hslJ(1441321,1441743) hslJ(1441321,1441743) 1441321-1441780 1441743-1441780 AATAGTCCTGAGTCAGAAACTGTAATTGAGAACCACAA ldhA ldhA ldhAp 1442915 reverse ldhA(1441854,1442843) ldhA(1441854,1442843) 1441854-1442915 1442843-1442915 CAATTAAATTTGAAATTTTGTAAAATATTTTTAGTAGCTTAAATGTGATTCAACATCACTGGAGAAAGTCTTA feaR feaR feaRp2 1447309 reverse feaR(1446378,1447283) feaR(1446378,1447283) 1446378-1447309 1447283-1447309 TACATTTCACAGAGCGAAAACGTGCCA feaR feaR feaRp1 1447349 reverse feaR(1446378,1447283) feaR(1446378,1447283) 1446378-1447349 1447283-1447349 ATTAGCTTCGTTTATTGCAACACAAATGCAACAATAAAAATACATTTCACAGAGCGAAAACGTGCCA feaR feaR feaRp 1447367 reverse feaR(1446378,1447283) feaR(1446378,1447283) 1446378-1447367 1447283-1447367 TTTCCTATAGTCAGGCTCATTAGCTTCGTTTATTGCAACACAAATGCAACAATAAAAATACATTTCACAGAGCGAAAACGTGCCA feaB feaB feaBp2 1447370 forward feaB(1447519,1449018) feaB(1447519,1449018) rho-independent(1449037,1449063) 1447370-1449063 1447370-1447519 AGTCTTGTCAGGCATAGAGACATAAGCGGTTATTGTCACGATTTGCGGAGCTTGTCACAGCTGACAAAGCGAATGTCACAGCGAAAAAAGTGACTTTTCTTGTCGCTGCGTACACTGAAATCACACTGGGTAAATAATAAGGAAAAGTGA 1449018-1449063 ATCTGGTTCGCTCATAAGTAAAAAACGGCACCTGGTGCCGTTTTTT feaR feaR feaRp3 1447394 reverse feaR(1446378,1447283) feaR(1446378,1447283) 1446378-1447394 1447283-1447394 TTATGTCTCTATGCCTGACAAGACTTATTTCCTATAGTCAGGCTCATTAGCTTCGTTTATTGCAACACAAATGCAACAATAAAAATACATTTCACAGAGCGAAAACGTGCCA feaB feaB feaBp1 1447492 forward feaB(1447519,1449018) feaB(1447519,1449018) 1447492-1449018 1447492-1447519 ACACTGGGTAAATAATAAGGAAAAGTGA tynA tynA tynAp 1451409 reverse tynA(1449076,1451349) tynA(1449076,1451349) 1449076-1451409 1451349-1451409 GACTAAACCGCCCACAGAGCGCGGTTGCTAACAAGAACACAACATCTGACGAGGTTAATAA paaZ paaZ paaZp 1453670 reverse paaZ(1451597,1453642) paaZ(1451597,1453642) 1451597-1453670 1453642-1453670 AGAAATGTGAAACATCTGGAGAGTAGCGA paaABCDEFGHIJK paaABCDEFGHIJK paaAp 1453865 forward paaA(1453927,1454856) paaK(1462125,1463438) 1453865-1463438 1453865-1453927 TAAAACAATGTGATTCGTGTTTTTAATTAATTCACGAAAACTGGAATCGTAAAGGTGATGACG paaABCDEFGHIJK paaJ paaJp3 1460644 forward paaJ(1460893,1462098) paaJ(1460893,1462098) 1460644-1462098 1460644-1460893 ACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCTTAACTGCTACTGCGCAGGTACGTCATCAGGGCAAGCAAACCGGTGTTTACGACATCGAAATTGTTAACCAACAACAAAAAACGGTTGCGCTGTTTCGCGGTAAATCTCACCGCATCGGCGGCACCATTACAGGAGAAGCCTGA paaABCDEFGHIJK paaJ paaJp2 1460771 forward paaJ(1460893,1462098) paaJ(1460893,1462098) 1460771-1462098 1460771-1460893 CGTCATCAGGGCAAGCAAACCGGTGTTTACGACATCGAAATTGTTAACCAACAACAAAAAACGGTTGCGCTGTTTCGCGGTAAATCTCACCGCATCGGCGGCACCATTACAGGAGAAGCCTGA paaABCDEFGHIJK paaJ paaJp1 1460801 forward paaJ(1460893,1462098) paaJ(1460893,1462098) 1460801-1462098 1460801-1460893 GACATCGAAATTGTTAACCAACAACAAAAAACGGTTGCGCTGTTTCGCGGTAAATCTCACCGCATCGGCGGCACCATTACAGGAGAAGCCTGA paaXY paaXY paaXp 1463509 forward paaX(1463539,1464489) paaY(1464471,1465061) 1463509-1465061 1463509-1463539 AATCACAACAATAACAACAGACTGAAGCGAA ydbD ydbD ydbDp 1475066 forward ydbD(1475144,1477450) ydbD(1475144,1477450) 1475066-1477450 1475066-1475144 TATTTCGCGAGAATAACGAATATACAAAAGGGAAAGATGCATTTCCCTTTTTTTCTTTTTTAATGGCATGGAGTGCATA ynbABCD ynbABCD ynbAp 1477597 forward ynbA(1477621,1478226) ynbD(1480909,1482201) 1477597-1482201 1477597-1477621 AAACCGAATTATCAAGGATTGATAA azoR azoR azoRp 1482904 reverse azoR(1482255,1482860) azoR(1482255,1482860) 1482255-1482904 1482860-1482904 AAGCAACGGGGCATCGCCCATTCAAACATCTATAAGGAAACACCA aldA aldA aldAp 1488190 forward aldA(1488232,1489671) aldA(1488232,1489671) 1488190-1489671 1488190-1488232 TGTATTCACCGAAAACAAACATATAAATCACAGGAGTCGCCCA rydC rydC rydCp 1491506 reverse rydC(1491442,1491506) rydC(1491442,1491506) 1491442-1491506 1491506-1491506 C sokB sokB sokBp 1492119 forward sokB(1492119,1492175) sokB(1492119,1492175) 1492119-1492175 1492119-1492119 G trg trg trgp 1492439 forward trg(1492470,1494110) trg(1492470,1494110) 1492439-1494110 1492439-1492470 CAGGAGTAAACCTGGACGAGAGACAACGGTAA ydcI ydcI ydcIp 1495134 reverse ydcI(1494148,1495071) ydcI(1494148,1495071) 1494148-1495134 1495071-1495134 TCAAGTTATCATAATCAAACAACTTCACTTGTCAGCGACACCGCTTCGTTTTTAACATCGCTTA rimL rimL rimLp 1498743 forward rimL(1498938,1499477) rimL(1498938,1499477) 1498743-1499477 1498743-1498938 TGAAATTGCCAGAAAGGAAGGTTCCGACGGTCGAGGGTACAATGCGGAAGTGGTCCGCATGAAAAAACAAAAGCTACAGTTAAAAGATGAGATGCTCAAAATCCTGCAGCAGGAGAGCGTCAAAGAGGTGTAAACTTTCCTAAGCCGCCAGCCAGGCGGCTTTTTTAACAACTGCATGGATTGACTGGAGATAAGA tehAB tehAB tehAp 1500536 forward tehA(1500573,1501565) tehB(1501562,1502155) 1500536-1502155 1500536-1500573 AAATATACTTTATAAATTAAACAAAATGAGTAAGAAGA sutR sutR sutRp 1506150 forward sutR(1506172,1506708) sutR(1506172,1506708) 1506150-1506708 1506150-1506172 TCCGTTTTGCCGGAGGAGTCGCA hicAB hicAB hicAp1 1509221 forward hicA(1509286,1509462) hicB(1509508,1509924) 1509221-1509924 1509221-1509286 AAATTACACACGGAGGTAAACACTAATGTTTACTTTGTTGATATACTCAGCGGCAGGGAGGCGATG hicAB hicAB hicAp2 1509275 forward hicA(1509286,1509462) hicB(1509508,1509924) 1509275-1509924 1509275-1509286 AGGGAGGCGATG ydcR ydcR ydcRp 1509978 forward ydcR(1510003,1511409) ydcR(1510003,1511409) 1509978-1511409 1509978-1510003 ATCTGCACATAATTACGATTCGATAA ydcSTUV-patD ydcSTUV-patD ydcSp1 1511599 forward ydcS(1511654,1512799) patD(1515578,1517002) 1511599-1517002 1511599-1511654 AGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTA yncE yncE yncEp 1523227 forward yncE(1523307,1524368) yncE(1523307,1524368) 1523227-1524368 1523227-1523307 ATAACAAGAGCGTAACGATGATTACGCTTAGCGAAGCATTGTGAAGCAGCAAAAATATCGGTTCATCAAAGGGAGTCGTCA ansP ansP ansPp1 1526011 reverse ansP(1524481,1525980) ansP(1524481,1525980) 1524481-1526011 1525980-1526011 GACTTTTTCATTAAAGCAATCAGGGAGAGCAA ansP ansP ansPp2 1526020 reverse ansP(1524481,1525980) ansP(1524481,1525980) 1524481-1526020 1525980-1526020 AACTTATATGACTTTTTCATTAAAGCAATCAGGGAGAGCAA yncG yncG yncGp 1526228 forward yncG(1526247,1526864) yncG(1526247,1526864) 1526228-1526864 1526228-1526247 AAAAGATTGTGAGGGGCATA narZYWV narWV narWp 1538687 reverse narW(1536614,1537309) narV(1535937,1536617) 1535937-1538687 1537309-1538687 GGGAAGATCAGGAAGAGTGGCAAGGCGGCTGGGTGCGTGATGTGAATGGCAAGATACGCCCGCGTCTGGGCAACAAGATGGGCGTAATAACCAAAATCTTCGCCAACCCGGTGGTGCCGCAGATTGATGATTACTACGAACCTTTCACCTTCGACTACGAACATTTGCATAGCGCACCGGAAGGCAAACATATTCCTACTGCTCGCCCGCGTTCACTGATTGACGGCAAACGGATGGACAAAGTGATCTGGGGGCCAAACTGGGAAGAACTGCTGGGCGGTGAGTTCGAAAAACGTGCCCGCGACCGCAACTTCGAGGCCATGCAAAAGGAGATGTACGGGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGCTGCGTGGCGACCTGCCCAAGCGGCGCTATCTACAAACGCGAAGAAGACGGCATTGTGCTGATTGATCAGGATAAATGCCGTGGCTGGCGTTTGTGCATAAGCGGTTGTCCGTACAAAAAAATCTACTTCAACTGGAAAAGCGGCAAGTCAGAAAAATGCATCTTCTGTTACCCACGAATTGAGTCCGGTCAACCGACCGTGTGCTCAGAAACCTGCGTGGGTCGCATCCGGTATCTGGGCGTGCTGCTTTACGACGCCGACCGCATCGAGGAAGCGGCGAGCACCGAGCGCGAAGTTGACCTCTATGAACGCCAGTGCGAAGTGTTCCTCGATCCACACGATCCCTCAGTGATCGAGGAAGCCCTGAAACAAGGTATTCCACAAAATGTGATTGACGCTGCCCAGCGTTCGCCAGTCTACAAAATGGCGATGGACTGGAAACTGGCACTACCGTTGCACCCTGAATACCGCACCCTGCCGATGGTCTGGTACGTTCCTCCGCTGTCACCGATTCAGTCCTACGCAGATGCGGGCGGTTTGCCGAAAAGCGAAGGCGTGCTGCCCGCCATCGAAAGCCTGCGTATTCCGGTGCAATATCTCGCCAATATGTTGAGTGCCGGCGATACCGGTCCGGTACTGCGGGCGCTGAAACGGATGATGGCGATGCGCCACTATATGCGTTCACAAACCGTGGAAGGCGTTACTGATACTCGTGCCATCGACGAAGTAGGCCTGAGCGTCGCCCAGGTCGAAGAGATGTATCGCTATCTCGCCATTGCCAACTATGAAGATCGTTTTGTTATCCCGACCAGCCATCGGGAAATGGCGGGCGATGCCTTCGCAGAACGCAACGGCTGCGGTTTTACCTTTGGCGACGGTTGCCACGGTTCGGACAGTAAATTCAACCTGTTCAACAGTAGCCGTATCGATGCCATCAACATCACCGAAGTGCGCGACAAAGCGGAGGGCGAATAA narU narU narUp1 1544124 reverse narU(1542672,1544060) narU(1542672,1544060) 1542672-1544124 1544060-1544124 CTATTGCGCCTTACCTCGTGTTTTGTCTTTTTTTCATTACCAATGTGTGCATGTGAGGAACAATA narU narU narUp2 1544163 reverse narU(1542672,1544060) narU(1542672,1544060) 1542672-1544163 1544060-1544163 CAGCACTTCACCCAATTCATCCTTAATTCTAATAACTGGCTATTGCGCCTTACCTCGTGTTTTGTCTTTTTTTCATTACCAATGTGTGCATGTGAGGAACAATA yddG yddG yddGp 1547205 reverse yddG(1546288,1547169) yddG(1546288,1547169) 1546288-1547205 1547169-1547205 TTAATTTTTAACGGCAAGAGAGACAAAACAGCGAGCA fdnGHI fdnGHI fdnGp 1547372 forward fdnG(1547401,1550448) fdnI(1551338,1551991) 1547372-1551991 1547372-1547401 AGTAATACCCCTGAAAAAAGAGGAAAGCAA bdm-sra sra srap 1556046 reverse sra(1555826,1555963) sra(1555826,1555963) 1555826-1556046 1555963-1556046 CAACCTAATTTAGGGGTTTAGCACGTGTTTCTTCGCTACGGCGATGTTGTCCTTAAAACTAGCTACAGGATTGAGGAGTTAAAA bdm-sra bdm-sra bdmp 1556340 reverse bdm(1556065,1556280) sra(1555826,1555963) 1555826-1556340 1556280-1556340 TGCTTTATAAATCTGCGATCCGTAGCAGACACCATAAATACACAGACACGGAGAATCACTA osmC osmC osmCp1 1556596 forward osmC(1556625,1557056) osmC(1556625,1557056) 1556596-1557056 1556596-1556625 TTCCTTTTTAAGCCCACAGGAGAGCAACAA osmC osmC osmCp2 1556606 forward osmC(1556625,1557056) osmC(1556625,1557056) 1556606-1557056 1556606-1556625 AGCCCACAGGAGAGCAACAA ddpXABCDF ddpXABCDF ddpXp1 1563107 reverse ddpX(1562495,1563076) ddpF(1557112,1558038) 1557112-1563107 1563076-1563107 CAGCAATTTTTGTCTTATACAGGAACCGTTTA ddpXABCDF ddpXABCDF ddpXp2 1563201 reverse ddpX(1562495,1563076) ddpF(1557112,1558038) 1557112-1563201 1563076-1563201 CACAAATGTTGATCAAAAGTTAAAAAATATAACTTTAAGCCAGCATTCTGGCGCTTATCCCGGCATGGCATGAGATCTGCATAAGCGGAAAGCGCAGCAATTTTTGTCTTATACAGGAACCGTTTA ddpXABCDF ddpXABCDF ddpXp3 1563249 reverse ddpX(1562495,1563076) ddpF(1557112,1558038) 1557112-1563249 1563076-1563249 AGATTCCTTCCTTAACTTCCCCTCTTGCACCAAAACTGCACTACGCTGCACAAATGTTGATCAAAAGTTAAAAAATATAACTTTAAGCCAGCATTCTGGCGCTTATCCCGGCATGGCATGAGATCTGCATAAGCGGAAAGCGCAGCAATTTTTGTCTTATACAGGAACCGTTTA gadBC gadBC gadBp 1572072 reverse gadB(1570645,1572045) gadC(1568954,1570489) rho-independent(1568904,1568930) 1568904-1572072 1572045-1572072 CGATCCAATCATTTTAAGGAGTTTAAAA 1568904-1568954 ACCATGTCTGAATGGTTATAAGACAAGGGAGCGATAATTCATCGCTCCCTT gadBC gadBC gadBp2 1572072 reverse gadB(1570645,1572045) gadC(1568954,1570489) rho-independent(1568904,1568930) 1568904-1572072 1572045-1572072 CGATCCAATCATTTTAAGGAGTTTAAAA 1568904-1568954 ACCATGTCTGAATGGTTATAAGACAAGGGAGCGATAATTCATCGCTCCCTT ydeNM ydeNM ydeNp 1582554 reverse ydeN(1580842,1582524) ydeM(1579633,1580790) 1579633-1582554 1582524-1582554 GAATTAAGTACAATAAGAAGAGGAACATTTA safA-ydeO safA-ydeO safAp 1584028 reverse safA(1583762,1583959) ydeO(1582926,1583687) 1582926-1584028 1583959-1584028 TCCAGCCTGTTATATTAAGCATACTGATTAACGATTTTTAACGTTATCCGCTAAATAAACATATTTGAAA ydeP ydeP ydePp 1586664 reverse ydeP(1584207,1586486) ydeP(1584207,1586486) 1584207-1586664 1586486-1586664 ATGAGAGATGATGCTTAACTTATCGTATTTAATCTATTGTTTAACGATAATAGATTAAAAATAGAAAGAGAGTAGTCCCCTACTCTTATATATCCATGTTGGCGATAATCCCTTTGTATGTACTGTGCATCATCGCTATTACAAATCCTAATAATTCATTTCCACACAGGATAAGTAGA hipBA hipBA hipBp 1592482 reverse hipB(1592176,1592442) hipA(1590854,1592176) 1590854-1592482 1592442-1592482 ATATCCCCTTAAGCGGATAAACTTGCTGTGGACGTATGACA lsrRK lsrRK lsrRp 1601257 reverse lsrR(1600288,1601241) lsrK(1598617,1600209) 1598617-1601257 1601241-1601257 AAGTGAAGAATGAATTA lsrACDBFG-tam lsrACDBFG-tam lsrAp 1601460 forward lsrA(1601490,1603025) tam(1607346,1608104) 1601460-1608104 1601460-1601490 AACTCACCTGCAAAACTGAACGGGGGAAATA lsrACDBFG-tam tam tamp 1607221 forward tam(1607346,1608104) tam(1607346,1608104) 1607221-1608104 1607221-1607346 GTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGCGAATTTATCAATTTTATCTACAATTGGGGTAACGCGCTGACGGGAGTAAAAAAA uxaB uxaB uxaBp 1610720 reverse uxaB(1609229,1610680) uxaB(1609229,1610680) 1609229-1610720 1610680-1610720 ATTCAAACAGGTTGTATGACTAATCAGAAGGGAACCCATTG ydeA ydeA ydeAp 1616955 forward ydeA(1617028,1618218) ydeA(1617028,1618218) 1616955-1618218 1616955-1617028 TGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTA marC marC marCp 1618941 reverse marC(1618243,1618908) marC(1618243,1618908) 1618243-1618941 1618908-1618941 TGATAACCCAGATACACAGGATAACAACCACCAA marRAB marRAB marRp 1619093 forward marR(1619120,1619554) marB(1619989,1620207) 1619093-1620207 1619093-1619120 AACTAATTACTTGCCAGGGCAACTAATG mgtS mgtS mgtSp 1622588 forward mgtS(1622646,1622741) mgtS(1622646,1622741) rho-independent(1622766,1622799) 1622588-1622799 1622588-1622646 TTGAGATGAAAATTAAGGTAAGCGAGGAAACACACCACACCATAAACGGAGGCAAATAA 1622741-1622799 ATGAACGGAGATAATCCCTCACCTAACCGGCCCCTTGTTACAGTTGTGTACAAGGGGCC mgrR mgrR mgrRp 1622914 reverse mgrR(1622817,1622914) mgrR(1622817,1622914) rho-independent(1622817,1622874) 1622817-1622914 1622914-1622914 G dgcZ dgcZ dgcZp 1623879 reverse dgcZ(1622960,1623850) dgcZ(1622960,1623850) 1622960-1623879 1623850-1623879 GCACAAGGAACTGTGAAAAAGGAGTGGCAA ydeI ydeI ydeIp5 1624559 reverse ydeI(1624105,1624497) ydeI(1624105,1624497) 1624105-1624559 1624497-1624559 GGCAATTATAAAAATAGCAACCAGACTTAATAAGTCAAACCAAACGCAATTAAGGAGTTAGTA ydeJ ydeJ ydeJp 1624688 forward ydeJ(1624773,1625291) ydeJ(1624773,1625291) 1624688-1625291 1624688-1624773 ATTTATATGTTTGAAAATTATTATATTGGACGAGCATACAGAAAAAGCAAATCACCTTTACATATAAAAGCGTGGACAAAAAACAG ydfG ydfG ydfGp 1627491 forward ydfG(1627517,1628263) ydfG(1627517,1628263) 1627491-1628263 1627491-1627517 ACACAAAAGCGTTGAGGAACAGTGAGA rspR ydfH ydfHp 1628326 forward rspR(1628352,1629038) rspR(1628352,1629038) 1628326-1629038 1628326-1628352 GTTAACTCACTCACAAGCAAGAACGAA ynfT-ydfK yntF-ydfK ynfTp 1632723 forward ynfT(1632890,1633003) ydfK(1633072,1633305) 1632723-1633305 1632723-1632890 TTTGCAGTTGCCGCTTCAGCTTGCGCCATAAACCGCCTGATTTTTGCTGCCACCTGTTAGCATTCCTGTATACCTGAAACGACAATGTTTATCTACGAACTTTAAGAACACCCAAGATAAAAATTGTCAACTATATCATATATAACACATTACTAATTCGAGGCTATA nohA-stfQ-tfaQ nohA-stfQ-tfaQ nohAp 1636603 reverse nohA(1635798,1636367) tfaQ(1634310,1634885) 1634310-1636603 1636367-1636603 AATCATTATCACTTTACGGGTCCTTTCCGGTGATCCGACAGGTTACGGGGCGGCGACCTCGCGGGTTTTCGCTATTTATGAAAATTTTCCGGTTTAAGGCATTTCCGTTCTTCTTCGTCGTAACTTAATGTTTTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAACGAGCTTTTGGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGGCCGTGGAATGAACAA gnsB gnsB gnsBp 1637846 reverse gnsB(1637609,1637782) gnsB(1637609,1637782) 1637609-1637846 1637782-1637846 GTTTGCACCATATAATCGACTTACTGTGTAACTGGAAAGTCATAACAGACTAAAAGAGGAAATGA cspI cspI cspIp2 1638712 reverse cspI(1638455,1638667) cspI(1638455,1638667) 1638455-1638712 1638667-1638712 CGGACCATTCTGCCCAAGGGCTAATTTCTTCAAAAGGTAATAATTA cspI cspI cspIp1 1638812 reverse cspI(1638455,1638667) cspI(1638455,1638667) 1638455-1638812 1638667-1638812 CTGGTTTGTTACAAATTTATCTGAAGCAGTCATTGTTATAATTTTATTATTTGTACCTCTTGAGATTTCCTTGTTGGTTTTTCTCTCTGATATTTTTTTTCGGACCATTCTGCCCAAGGGCTAATTTCTTCAAAAGGTAATAATTA cspB cspB cspBp 1641715 reverse cspB(1641339,1641554) cspB(1641339,1641554) 1641339-1641715 1641554-1641715 GTCGGTTTGAAGAACAGACGATATACGAAGTAGTTTACTAAAGCAGTTCTCATTTCAGGTGTTATTCACTTATTCCTTCTTTGAGTCTCTCCAATTAAGTACGAAGTCGTTTCTGTTATGCAAACCATTTATGCCGAAAGGCTCAAGTTAAGGAATGTAGAA relBE-hokD relBE-hokD relBp 1645903 reverse relB(1645633,1645872) hokD(1645119,1645274) rho-independent(1645034,1645049) 1645034-1645903 1645872-1645903 ATGACATTTGTAATTACAAGAGGTGTAAGACA 1645034-1645119 AGAGACCCGGCGGGGGAGAAATCCCTCGCCACCTCTGATGTGGCAGGCATCCTCAACGCACCCGCACTTAACCCGCTTCGGCGGGT flxA flxA flxAp 1646388 forward flxA(1646405,1646737) flxA(1646405,1646737) 1646388-1646737 1646388-1646405 TTTAAAAGGAGAAATCTA dicC-ydfXW dicC-ydfXW dicCp 1647876 reverse dicC(1647620,1647850) ydfW(1647174,1647323) 1647174-1647876 1647850-1647876 TATGACTAACAATAAAGGTGTTTTAAA ydfABC ydfABC ydfAp8 1648438 forward ydfA(1648508,1648663) ydfC(1648823,1649041) 1648438-1649041 1648438-1648508 ATCAACACACCGCACGGTGTTCTCAGCAAACAGTTCCGCTACCCCAGCGTTAAGGGGAAATGAGGTCAGCA dicB-ydfDE-insD7-intQ dicB-ydfDE-insD-intQ dicBp 1649597 forward dicB(1649609,1649797) intQ(1651512,1652708) 1649597-1652708 1649597-1649609 GAGGACGCGATAA rspAB rspA-rspB rspAp 1655171 reverse rspA(1653927,1655141) rspB(1652896,1653915) 1652896-1655171 1655141-1655171 CATCACGACAAGCGATGCAAGGAATCGAACA ynfB-speG ynfB-speG ynfBp 1655709 forward ynfB(1655808,1656149) speG(1656184,1656744) 1655709-1656744 1655709-1655808 GCGACATAATATCATCAATATAAACACCCTCCTGGTACGTTTTGCGTCCGCAGTGGATGGTGTAGAATCACCTTTAATCATTCATACAGGGAATGAATTA ynfEFGH-dmsD ynfEFGH-dmsD ynfEp 1658003 forward ynfE(1658069,1660495) dmsD(1664506,1665120) 1658003-1665120 1658003-1658069 ATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTA ynfEFGH-dmsD ynfEFGH-dmsD ynfEp2 1658003 forward ynfE(1658069,1660495) dmsD(1664506,1665120) 1658003-1665120 1658003-1658069 ATTGTTAGCGCGCTAAATATTCAATATATAAACTTTTATATAACGATAAAGAACAGGGAGTGAGTTA mlc-bidA mlc-ynfK mlcp2 1668591 reverse mlc(1667344,1668564) bidA(1666524,1667219) 1666524-1668591 1668564-1668591 GGAGCGCGAAAATATAGGGAGTATGCGG mlc-bidA mlc-ynfK mlcp 1668591 reverse mlc(1667344,1668564) bidA(1666524,1667219) 1666524-1668591 1668564-1668591 GGAGCGCGAAAATATAGGGAGTATGCGG mlc-bidA mlc mlcp1 1668603 reverse mlc(1667344,1668564) mlc(1667344,1668564) 1667344-1668603 1668564-1668603 ACAGATTATTTCGGAGCGCGAAAATATAGGGAGTATGCGG ynfM ynfM ynfMp 1669672 forward ynfM(1669699,1670952) ynfM(1669699,1670952) 1669672-1670952 1669672-1669699 TACAGGCATATTTAGCAAGGATTTCAAG asr asr asrp 1671327 forward asr(1671376,1671684) asr(1671376,1671684) rho-independent(1671703,1671720) 1671327-1671720 1671327-1671376 AACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAA 1671684-1671720 AGTTTTCAACAGTAATGCTGGCGCGCCCCCTCGCGCC asr asr asrp2 1671327 forward asr(1671376,1671684) asr(1671376,1671684) rho-independent(1671703,1671720) 1671327-1671720 1671327-1671376 AACGGCCCCGCAGTGGGGTTAAATGAAAAAACAAATTGAGGGTATGACAA 1671684-1671720 AGTTTTCAACAGTAATGCTGGCGCGCCCCCTCGCGCC mdtUJI mdtUJI mdtJp 1673779 reverse mdtU(1673608,1673709) mdtI(1672820,1673149) 1672820-1673779 1673709-1673779 CGTGTTCAACTACCGAGGACAATTATCATCCGCGATGACGAGAAGCAACACTGCGGATAATTGTAATATTA tqsA tqsA tqsAp 1673890 forward tqsA(1673913,1674947) tqsA(1673913,1674947) 1673890-1674947 1673890-1673913 AGGAAGAAAAAACGGGGACAAGCA pntAB pntAB pntAp 1677975 reverse pntA(1676371,1677903) pntB(1674972,1676360) 1674972-1677975 1677903-1677975 CGTACATGAGCAGCTTGTGTGGCTCCTGACACAGGCAAACCATCATCAATAAAACCGATGGAAGGGAATATCA rstAB rstAB rstAp 1682138 forward rstA(1682159,1682878) rstB(1682882,1684183) 1682138-1684183 1682138-1682159 TTTATATCTACCGTGAATGTTA fumAC fumC fumCp1 1686654 reverse fumC(1685185,1686588) fumC(1685185,1686588) 1685185-1686654 1686588-1686654 GTGAGCTAAAAGTTGCTTAACGAAAGCAAAACAGAAAGAAAAAATTAATCAGGTGAGGAGCAGGTCA fumAC fumC fumCp2 1686709 reverse fumC(1685185,1686588) fumC(1685185,1686588) 1685185-1686709 1686588-1686709 GTTTTTTTACATGGCACGAAAGACCAAACATTTGTTATCAAATGGTAAATAATAAGTGAGCTAAAAGTTGCTTAACGAAAGCAAAACAGAAAGAAAAAATTAATCAGGTGAGGAGCAGGTCA fumAC fumA fumAp 1688440 reverse fumA(1686731,1688377) fumA(1686731,1688377) rho-independent(1686705,1686725) 1686705-1688440 1688377-1688440 TTTAACAGGGCAACGGAACACCCGCCCAGAGCATAACCAAACCAGGCAGTAAGTGAGAGAACAA 1686705-1686731 AACAGAGCCGCCCTTCGGGGCGGTTTT fumAC fumAC fumAp 1688440 reverse fumA(1686731,1688377) fumC(1685185,1686588) 1685185-1688440 1688377-1688440 TTTAACAGGGCAACGGAACACCCGCCCAGAGCATAACCAAACCAGGCAGTAAGTGAGAGAACAA manA manA manAp 1688551 forward manA(1688576,1689751) manA(1688576,1689751) 1688551-1689751 1688551-1688576 TTCCACATTAAAACAGGGATTGATCA ydgA ydgA ydgAp 1689794 forward ydgA(1689852,1691360) ydgA(1689852,1691360) 1689794-1691360 1689794-1689852 AGGCTTATAACACCTTCAGGCGGCCAGTCCGCCTGATTTCATTTTATGGATAATCATTA uidABC uidABC uidAp 1696152 reverse uidA(1694260,1696071) uidC(1691586,1692851) 1691586-1696152 1696071-1696152 GATAACTGTGTGCAACACAGAATTGGTTAACTAATCAGATTAAAGGTTGACCAGTATTATTATCTTAATGAGGAGTCCCTTA uidR uidR uidRp 1697075 reverse uidR(1696462,1697052) uidR(1696462,1697052) 1696462-1697075 1697052-1697075 TTCACGCTAACTATAATGGTTTAA hdhA hdhA hdhAp 1698122 reverse hdhA(1697273,1698040) hdhA(1697273,1698040) 1697273-1698122 1698040-1698122 GTCCTTTCCTCAAGGTTAATGATAAAAAATGTGGCACACAGGCGGTGCCTTTTATTTTTACTGAAGTTCACAGGAGGTTTATG malI malI malIp 1699228 reverse malI(1698152,1699180) malI(1698152,1699180) rho-independent(1698136,1698163) 1698136-1699228 1699180-1699228 AAGGTAAAACGTTTTATCTGTCACATAATCAGGGAGTAGGTCATCTGCA 1698136-1698152 ATCCTCTCTTTATCTGC malXY malXY malXp 1699313 forward malX(1699355,1700947) malY(1700957,1702129) 1699313-1702129 1699313-1699355 CAATTTACTGAATCCAGATTGTTCTCTACGAGGAGTCGTTTTA malXY malY malYp 1700840 forward malY(1700957,1702129) malY(1700957,1702129) 1700840-1702129 1700840-1700957 ATTGGCGTAGTACAACTTAATCAACATAACCTGCAGGTTGTTATCGGGCCACAAGTTCAGTCAGTAAAAGATGAAATGGCCGGTCTGATGCATACTGTCCAGGCATAAGGATAAGATA add add addp6 1702202 forward add(1702233,1703234) add(1702233,1703234) 1702202-1703234 1702202-1702233 GCACTTTTATATCCAGAAAAAGAGTGCGACCA blr blr blrp 1704512 forward blr(1704551,1704676) blr(1704551,1704676) 1704512-1704676 1704512-1704551 CTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAA ydgK-rsxABCDGE-nth ydgK-rsxABCDGE-nth ydgKp 1705207 forward ydgK(1705250,1705690) nth(1711523,1712158) 1705207-1712158 1705207-1705250 TAAAATTAGATTTGCCTGTTTGCGTCGCTATTCTGGAGAACCTA ydgK-rsxABCDGE-nth rsxABCDGE-nth rsxAp 1705755 forward rsxA(1705767,1706348) nth(1711523,1712158) 1705755-1712158 1705755-1705767 TCAGGCCGAAAAA dtpA tppB tppBp 1712671 forward dtpA(1712769,1714271) dtpA(1712769,1714271) 1712671-1714271 1712671-1712769 GCCGTTTCCCCTCCCACTATAACAATTGCGCGTATGTTTTTTATACATAACGCGAGAAAGCACCCCCGTTAATATGGGATGTAAAAAAAGAGGTAAAAG gstA gstA gstAp 1714327 forward gstA(1714377,1714982) gstA(1714377,1714982) 1714327-1714982 1714327-1714377 GTTCAGCAACGCACTACCATACTTTAAACCACAGACAAAAGGAGTTACCGA pdxH-tyrS-pdxY tyrS-pdxY tyrSp1 1717269 reverse tyrS(1715948,1717222) pdxY(1715026,1715889) 1715026-1717269 1717222-1717269 AGTCGTGTACCGGCAAAGGTGCAGTCGTTATATACATGGAGATTTTGA pdxH-tyrS-pdxY tyrS-pdxY tyrSp2 1717283 reverse tyrS(1715948,1717222) pdxY(1715026,1715889) 1715026-1717283 1717222-1717283 CGCATCTGGCGAAAAGTCGTGTACCGGCAAAGGTGCAGTCGTTATATACATGGAGATTTTGA pdxH-tyrS-pdxY pdxH-tyrS-pdxY pdxHp 1718034 reverse pdxH(1717351,1718007) pdxY(1715026,1715889) 1715026-1718034 1718007-1718034 ACCCACTGACAATCCGTAAAGAAAACCA slyB slyB slyBp2 1719748 forward slyB(1719876,1720343) slyB(1719876,1720343) 1719748-1720343 1719748-1719876 GTTGATCCTACTTTCATTATGATTTGCTCATATTTGGTAGAACATGTAACCATGGATTCACATATGCCATATACTTTGACCATGAGGGATGCTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAA slyB slyB slyBp1 1719777 forward slyB(1719876,1720343) slyB(1719876,1720343) 1719777-1720343 1719777-1719876 ATATTTGGTAGAACATGTAACCATGGATTCACATATGCCATATACTTTGACCATGAGGGATGCTTGCGTGGCGTTTCATGGTGAACAGGAGATTTTTCAA ydhIJK ydhIJK ydhIp 1720998 forward ydhI(1721025,1721261) ydhK(1722121,1724133) 1720998-1724133 1720998-1721025 ATATTCGGTCGTAAAGGAATCTACTTTG sodC sodC sodCp 1724679 reverse sodC(1724134,1724655) sodC(1724134,1724655) 1724134-1724679 1724655-1724679 GAATGCACAATGAACGGAGGTCCTA nemRA-gloA nemRA nemRp 1726021 forward nemR(1726023,1726622) nemA(1726659,1727756) 1726021-1727756 1726021-1726023 GCA nemRA-gloA nemRA-gloA nemRp 1726021 forward nemR(1726023,1726622) gloA(1727837,1728244) 1726021-1728244 1726021-1726023 GCA nemRA-gloA gloA gloAp 1727801 forward gloA(1727837,1728244) gloA(1727837,1728244) 1727801-1728244 1727801-1727837 CATTTTGAATCTGTTAGCCATTTTGAGGATAAAAAGA rnt-lhr rnt-lhr rntp 1728320 forward rnt(1728347,1728994) lhr(1729087,1733703) rho-independent(1733711,1733740) 1728320-1733740 1728320-1728347 GCAATTTATCCGTATTAAGAGAATCAGA 1733703-1733740 GAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGT rnt-lhr lhr lhrp 1728353 forward lhr(1729087,1733703) lhr(1729087,1733703) rho-independent(1733711,1733740) 1728353-1733740 1728353-1729087 GATAACGCTCAACTTACCGGTCTGTGCGACCGTTTTCGTGGTTTTTATCCTGTTGTGATCGATGTTGAAACAGCCGGATTTAACGCCAAAACCGATGCGCTGCTTGAGATTGCCGCCATCACCCTGAAAATGGATGAACAAGGCTGGCTGATGCCGGACACCACATTACATTTCCACGTCGAACCATTTGTCGGCGCAAATTTGCAACCAGAAGCCCTCGCCTTCAACGGCATTGACCCGAACGATCCCGATCGCGGCGCGGTCAGCGAATACGAGGCGCTGCACGAAATTTTTAAAGTTGTACGTAAAGGTATTAAAGCGAGCGGCTGTAACCGCGCCATTATGGTGGCGCACAATGCCAATTTTGATCACAGCTTTATGATGGCCGCCGCAGAACGCGCCTCACTGAAACGTAACCCGTTCCACCCTTTCGCCACTTTTGACACTGCTGCACTGGCCGGGCTGGCACTCGGACAAACCGTATTGTCAAAGGCTTGCCAGACCGCTGGCATGGACTTCGACAGCACCCAGGCGCACTCCGCGCTGTACGACACCGAACGCACTGCTGTGCTGTTTTGTGAAATCGTCAACCGCTGGAAACGTCTGGGAGGCTGGCCGCTATCTGCCGCCGAAGAGGTGTAATCGAGTCGATGCCTGATGACATGCAATGATTCAGGCATCTATAGTGAGGCTATTCCACGCATCCTGCATGATATTCACGGGGAATAGCGTTAA 1733703-1733740 GAGAAAGGACTGACGGATGCCCGTTCGCATCCGTCAGT grxD grxD grxD 1734162 reverse grxD(1733754,1734101) grxD(1733754,1734101) 1733754-1734162 1734101-1734162 GCCGCACTGACCCGCTACAATGTCAGATTACTGCCGTAAAGAAGTTTGAGGAAGCAAGACAA mepH mepH mepHp 1734357 forward mepH(1734435,1735250) mepH(1734435,1735250) 1734357-1735250 1734357-1734435 TCTTCTATGCATTAGAATCATCAAGTTTTGTAAATCAGACGCAGGCATGATAGACCTGCCTTTACAGAGGGACGCTCAG sodB sodB sodBp 1735323 forward sodB(1735378,1735959) sodB(1735378,1735959) rho-independent(1736082,1736114) 1735323-1736114 1735323-1735378 ATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAA 1735959-1736114 ATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTGCGTTTTT purR purR purRp 1737689 forward purR(1737844,1738869) purR(1737844,1738869) 1737689-1738869 1737689-1737844 TACACTATTTGCGTACTGGCCATTGACCCCTTCCTGACGCTCCGTGTCGTTTTTCCGGCGTACCGCAACACTTTTGTTGTGCGTAAGGTGTGTAAAGGCAAACGTTTACCTTGCGATTTTGCAGGAGCTGAAGTTAGGGTCTGGAGTGAAATGGAA cfa cfa cfap1 1741201 forward cfa(1741413,1742561) cfa(1741413,1742561) 1741201-1742561 1741201-1741413 GAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTATGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCAAAAAGCGTCTACGCTGTTTTAAGGTTCTGATCACCGACCAGTGATGGAGAAACTA cfa cfa cfap 1741201 forward cfa(1741413,1742561) cfa(1741413,1742561) 1741201-1742561 1741201-1741413 GAGTTGTTAAAGCTACGATAAATATTATGTTTTTACGGGGACAGGATCGTTCCCGACTCACTATGGATAGTCATTTCGGCAAGGGTTCCTCCTTTCCCTCTGTTCTACGTCGGATTATAGACTCGCGGTTTTTTCTGCGAGATTTCTCACAAAGCCCAAAAAGCGTCTACGCTGTTTTAAGGTTCTGATCACCGACCAGTGATGGAGAAACTA cfa cfa cfap2 1741379 forward cfa(1741413,1742561) cfa(1741413,1742561) 1741379-1742561 1741379-1741413 AAGGTTCTGATCACCGACCAGTGATGGAGAAACTA ydhQ ydhQ ydhQp 1746202 reverse ydhQ(1744871,1746127) ydhQ(1744871,1746127) 1744871-1746202 1746127-1746202 GTCGTGGATAAATCCTCCGTAGCCTTTACACTTAGGTAGCAATAAAGGCACACAGATGCAGCAAAGGAATAAATCA valVW valVW valVp 1746415 forward valV(1746435,1746511) valW(1746516,1746592) 1746415-1746592 1746415-1746435 CCGTTGTCACCTACAACGTTG ydhYVWXUT ydhYVWXUT ydhYp 1754642 reverse ydhY(1753851,1754477) ydhT(1748747,1749559) 1748747-1754642 1754477-1754642 CCTAACCATAAAGGATTAGTTTATCGGCGTTAATCTTTTCTCATACACTATCGGGTTAGGGAAAATATCTGGTGTTGGGGACAGAGTCAGCAGCGTATTAGTTGAATGCTTAATATCAGGCTGCTGAATTGTCAGCACTGTGTTTGCGAAGAGGATGCGAAATAAA pykF pykF pykFp 1755467 forward pykF(1755698,1757110) pykF(1755698,1757110) 1755467-1757110 1755467-1755698 CCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCACCACTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCA pykF pykF pykFp2 1755600 forward pykF(1755698,1757110) pykF(1755698,1757110) 1755600-1757110 1755600-1755698 GAGGCACCACCACTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCA pykF pykF pykFp4 1755600 forward pykF(1755698,1757110) pykF(1755698,1757110) 1755600-1757110 1755600-1755698 GAGGCACCACCACTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCA pykF pykF pykFp3 1755617 forward pykF(1755698,1757110) pykF(1755698,1757110) 1755617-1757110 1755617-1755698 GTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCA pykF pykF pykFp1 1755663 forward pykF(1755698,1757110) pykF(1755698,1757110) 1755663-1757110 1755663-1755698 CTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCA pykF pykF pykFp5 1755663 forward pykF(1755698,1757110) pykF(1755698,1757110) 1755663-1757110 1755663-1755698 CTCCCATCCTTCTCAACTTAAAGACTAAGACTGTCA lpp lpp lppp2 1757296 forward lpp(1757421,1757657) lpp(1757421,1757657) 1757296-1757657 1757296-1757421 TGCTTCTTTGAGCGAACGATCAAAAATAAGTGCCTTCCCATCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAA lpp lpp lpp 1757383 forward lpp(1757421,1757657) lpp(1757421,1757657) 1757383-1757657 1757383-1757421 GCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAA sufABCDSE sufABCDSE sufAp 1764418 reverse sufA(1764018,1764386) sufE(1758874,1759290) 1758874-1764418 1764386-1764418 ATACGCTGAAAGCGATGAAGTGAGGTAAATCGA rprA rprA rprAp 1770372 forward rprA(1770372,1770477) rprA(1770372,1770477) 1770372-1770477 1770372-1770372 A ydiNB-aroD aroD aroDp 1774571 forward aroD(1774686,1775444) aroD(1774686,1775444) 1774571-1775444 1774571-1774686 GCAAGGGGCTGAACAGTTCACATTATGGACTGGCAAAGATTTCCCTCTGGAATATGTTAAACAGGTCATGGGGTTCGGTGCCTGACAGGCTGACCGCGTGCAGAAAGGGTAAAAAA ydiP ydiP ydiPp 1779328 reverse ydiP(1778390,1779301) ydiP(1778390,1779301) 1778390-1779328 1779301-1779328 GCTTGCTCATGGAATAGGGAGGTTGTCA ppsA ppsA ppsAp 1787161 reverse ppsA(1784734,1787112) ppsA(1784734,1787112) 1784734-1787161 1787112-1787161 GCAGAAATGTGTTTCTCAAACCGTTCATTTATCACAAAAGGATTGTTCGA aroH aroH aroHp1 1788318 forward aroH(1788435,1789481) aroH(1788435,1789481) rho-independent(1789487,1789510) 1788318-1789510 1788318-1788435 ACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTTTATCGTGATGCGCATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAA 1789481-1789510 AATGCGTGCCCATTCCTGACGGAATGGGCA aroH aroH aroHp2 1788384 forward aroH(1788435,1789481) aroH(1788435,1789481) rho-independent(1789487,1789510) 1788384-1789510 1788384-1788435 ATCACTTCCCGGCAGTCCTGCCGTAGAAGCAACAAATTTCTGAGACTTGTAA 1789481-1789510 AATGCGTGCCCATTCCTGACGGAATGGGCA selO ydiU ydiUp 1791254 reverse selO(1789808,1791244) selO(1789808,1791244) 1789808-1791254 1791244-1791254 AGGAGGATCTA rflP ydiV ydiVp 1792087 reverse rflP(1791307,1792020) rflP(1791307,1792020) 1791307-1792087 1792020-1792087 TTATGTCTTATGGCCTCATCCCTTTTAGCCGGATACTGAAAAACATCCTTCGAGAGGGACGGTTACCA btuCED btuD btuDp 1793583 reverse btuD(1792809,1793558) btuD(1792809,1793558) 1792809-1793583 1793558-1793583 GCATTAAACTGGCGTTGGCAAAATAA btuCED btuE btuEp1 1794124 reverse btuE(1793558,1794109) btuE(1793558,1794109) 1793558-1794124 1794109-1794124 CACCCAGGAGAAACGA btuCED btuE btuEp2 1794129 reverse btuE(1793558,1794109) btuE(1793558,1794109) 1793558-1794129 1794109-1794129 GACCACACCCAGGAGAAACGA thrS-infC-rpmI-rplT-pheMST-ihfA ihfA ihfAp4 1795721 reverse ihfA(1795253,1795552) ihfA(1795253,1795552) rho-independent(1795216,1795239) 1795216-1795721 1795552-1795721 GACGTGTACCGCGGTAAGGGTGTTGCGGAGGGGTATAAGAGCCTCGCCATAAGCCTGATCCTGCAAGATACCAGCCGTACACTCGAAGAAGAGGAGATTGCCGCTACCGTCGCCAAATGTGTAGAGGCATTAAAAGAGCGATTCCAGGCATCATTGAGGGATTGAACCTA 1795216-1795253 ATCTGATCTAACTAAAAAGGCCGCTCTGCGGCCTTTTT thrS-infC-rpmI-rplT-pheMST-ihfA pheMST-ihfA pheMp 1799301 reverse pheM(1799226,1799270) ihfA(1795253,1795552) rho-independent(1795216,1795239) 1795216-1799301 1799270-1799301 TTTTGAAGAGTACCAAAAGGTAACGCAAGCAA 1795216-1795253 ATCTGATCTAACTAAAAAGGCCGCTCTGCGGCCTTTTT thrS-infC-rpmI-rplT-pheMST-ihfA pheM pheMp 1799301 reverse pheM(1799226,1799270) pheM(1799226,1799270) rho-independent(1799161,1799176) 1799161-1799301 1799270-1799301 TTTTGAAGAGTACCAAAAGGTAACGCAAGCAA 1799161-1799226 AATCCAGGAGGCTAGCGCGTGAGAAGAGAAACGGAAAACAGCGCCTGAAAGCCTCCCAGTGGAGGC thrS-infC-rpmI-rplT-pheMST-ihfA rplT rplTp 1799763 reverse rplT(1799393,1799749) rplT(1799393,1799749) rho-independent(1799363,1799382) 1799363-1799763 1799749-1799763 ACAGGAGAGCACATA 1799363-1799393 AGCCAGTTGAAAGAGGGAGCTAGTCTCCCTC thrS-infC-rpmI-rplT-pheMST-ihfA rplT-pheM rplTp 1799763 reverse rplT(1799393,1799749) pheM(1799226,1799270) rho-independent(1799161,1799176) 1799161-1799763 1799749-1799763 ACAGGAGAGCACATA 1799161-1799226 AATCCAGGAGGCTAGCGCGTGAGAAGAGAAACGGAAAACAGCGCCTGAAAGCCTCCCAGTGGAGGC thrS-infC-rpmI-rplT-pheMST-ihfA rpmI-rplT rpmIp 1800427 reverse rpmI(1799802,1799999) rplT(1799393,1799749) rho-independent(1799363,1799382) 1799363-1800427 1799999-1800427 GCAAATTCCTCTATGAAAAGAGCAAGTCTTCTAAGGAACAGAAGAAAAAGCAAAAAGTTATCCAGGTTAAGGAAATTAAATTCCGTCCTGGTACAGATGAAGGCGACTATCAGGTAAAACTCCGCAGCCTGATTCGCTTTCTCGAAGAGGGTGATAAAGCCAAAATCACGCTGCGTTTCCGCGGTCGTGAGATGGCGCACCAGCAAATCGGTATGGAAGTGCTTAATCGCGTGAAAGACGATTTGCAAGAACTGGCAGTGGTCGAATCCTTCCCAACGAAGATCGAAGGCCGCCAGATGATCATGGTGCTCGCTCCTAAGAAGAAACAGTAAGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCACAGGCTTTGTTCGCCTTTGTTTCGTTTATTAACAATGCGAAGTGGAAGTTATTAAAA 1799363-1799393 AGCCAGTTGAAAGAGGGAGCTAGTCTCCCTC thrS-infC-rpmI-rplT-pheMST-ihfA infC-rpmI-rplT infCp2 1800818 reverse infC(1800096,1800638) rplT(1799393,1799749) rho-independent(1799363,1799382) 1799363-1800818 1800638-1800818 CACACTTTGCGTCGCGTCCCATATATGCTGGTCTGTGGTGATAAAGAGGTGGAATCAGGCAAAGTTGCCGTTCGCACCCGCCGTGGTAAAGACCTGGGAAGCATGGACGTAAATGAAGTGATCGAGAAGCTGCAACAAGAGATTCGCAGCCGCAGTCTTAAACAATTGGAGGAATAAGGTA 1799363-1799393 AGCCAGTTGAAAGAGGGAGCTAGTCTCCCTC thrS-infC-rpmI-rplT-pheMST-ihfA infC infCp1 1801346 reverse infC(1800096,1800638) infC(1800096,1800638) rho-independent(1800035,1800091) 1800035-1801346 1800638-1801346 AGCACTTTTGGCTTCGAGAAGATCGTCGTCAAACTCTCCACTCGTCCTGAAAAACGTATTGGCAGCGACGAAATGTGGGATCGTGCTGAGGCGGACCTGGCGGTTGCGCTGGAAGAAAACAACATCCCGTTTGAATATCAACTGGGTGAAGGCGCTTTCTACGGTCCGAAAATTGAATTTACCCTGTATGACTGCCTCGATCGTGCATGGCAGTGCGGTACAGTACAGCTGGACTTCTCTTTGCCGTCTCGTCTGAGCGCTTCTTATGTAGGCGAAGACAATGAACGTAAAGTACCGGTAATGATTCACCGCGCAATTCTGGGGTCGATGGAACGTTTCATCGGTATCCTGACCGAAGAGTTCGCTGGTTTCTTCCCGACCTGGCTTGCGCCGGTTCAGGTTGTTATCATGAATATTACCGATTCACAGTCTGAATACGTTAACGAATTGACGCAAAAACTATCAAATGCGGGCATTCGTGTTAAAGCAGACTTGAGAAATGAGAAGATTGGCTTTAAAATCCGCGAGCACACTTTGCGTCGCGTCCCATATATGCTGGTCTGTGGTGATAAAGAGGTGGAATCAGGCAAAGTTGCCGTTCGCACCCGCCGTGGTAAAGACCTGGGAAGCATGGACGTAAATGAAGTGATCGAGAAGCTGCAACAAGAGATTCGCAGCCGCAGTCTTAAACAATTGGAGGAATAAGGTA 1800035-1800096 AGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCACAGGCTTTGTTCGCCTTTGTT thrS-infC-rpmI-rplT-pheMST-ihfA thrS-infC thrSp 1802733 reverse thrS(1800642,1802570) infC(1800096,1800638) rho-independent(1800035,1800091) 1800035-1802733 1802570-1802733 AACCGGGTGGAAGGTGAGAGGTTAATGTCTTTCATTTGTGTACCTGATTGCGAACCAATTTAGCATTTGTTGGCTAGATGGTTTCGCAATGAACTGTTAATAAACAAATTTTTCTTTGTATGTGATCTTTCGTGTGGGTCACCACTGCAAATAAGGATATAAAA 1800035-1800096 AGGCCTTCAAGTAGCACTGTCTGTGGAGCCTTCGGGCTTCACAGGCTTTGTTCGCCTTTGTT thrS-infC-rpmI-rplT-pheMST-ihfA thrS-infC-rpmI-rplT-pheMST-ihfA thrSp 1802733 reverse thrS(1800642,1802570) ihfA(1795253,1795552) 1795253-1802733 1802570-1802733 AACCGGGTGGAAGGTGAGAGGTTAATGTCTTTCATTTGTGTACCTGATTGCGAACCAATTTAGCATTTGTTGGCTAGATGGTTTCGCAATGAACTGTTAATAAACAAATTTTTCTTTGTATGTGATCTTTCGTGTGGGTCACCACTGCAAATAAGGATATAAAA pfkB pfkB pfkBp2 1806323 forward pfkB(1806370,1807299) pfkB(1806370,1807299) 1806323-1807299 1806323-1806370 TTCCGCTGATTCGGTGCCAGACTGAAATCAGCCTATAGGAGGAAATGA pfkB pfkB pfkBp1 1806351 forward pfkB(1806370,1807299) pfkB(1806370,1807299) 1806351-1807299 1806351-1806370 CAGCCTATAGGAGGAAATGA yniB yniB yniBp 1809263 reverse yniB(1808697,1809233) yniB(1808697,1809233) 1808697-1809263 1809233-1809263 GAAACGACGCGTCTTAATCAAGGAGAACTCA hxpB hxpB hxpBp 1809326 forward hxpB(1809380,1810048) hxpB(1809380,1810048) 1809326-1810048 1809326-1809380 AATCATAAGCACGGCTTAATACCTTACACATAATGCTCTAAAGGAGAGGTTGTAA ydjM ydjM ydjMp 1810170 forward ydjM(1810211,1810801) ydjM(1810211,1810801) 1810170-1810801 1810170-1810211 AATCCTATACTGTACGTATCGACAGTTTAGTGAGTTTTATCA tcyP tcyP tcyPp 1810882 forward tcyP(1810934,1812325) tcyP(1810934,1812325) 1810882-1812325 1810882-1810934 AACACTATGACTGCTACGCAGTGATAGAAATAATAAGATCAGGAGAACGGGGA cedA cedA cedAp 1813742 reverse cedA(1813421,1813663) cedA(1813421,1813663) 1813421-1813742 1813663-1813742 GCAAAGCGGGACGTACAGGGGCTAAATCGGCTAAACTACAGTTTTTCTGATTTTTAATATGCGTTTAGTGAAGCCAGTAA katE katE katEp 1813814 forward katE(1813867,1816128) katE(1813867,1816128) rho-independent(1816258,1816282) 1813814-1816282 1813814-1813867 TTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAA 1816128-1816282 ATGGGAGGCGGCGCAATTGCGCCGCCTCAAATGATTTACATAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCAGGAAACACGTAGGCCTGATAAGCGAAGCGCATCAGGC chbBCARFG chbBCARFG chbBp 1821726 reverse chbB(1821299,1821619) chbG(1816386,1817135) 1816386-1821726 1821619-1821726 AGCCACAAAAAAAGTCATGTTGGTTTCGCAAGTTACCCAGAGCATGGAAGCAGGTTAAGGCTTGCGGAGTGTCTGGCTGACAGATAATCGTCGATGAGGGCAGTTTTA osmE osmE osmEp 1822283 reverse osmE(1821918,1822256) osmE(1821918,1822256) rho-independent(1821865,1821886) 1821865-1822283 1822256-1822283 ACACGCTGATAAACAAGAGGACGGAATA 1821865-1821918 ATCAATTCGTCTGAAAGCTTGAGTAACAACGGAAACCGGCCATTGCGCCGGTTT osmE osmE osmEp2 1822283 reverse osmE(1821918,1822256) osmE(1821918,1822256) rho-independent(1821865,1821886) 1821865-1822283 1822256-1822283 ACACGCTGATAAACAAGAGGACGGAATA 1821865-1821918 ATCAATTCGTCTGAAAGCTTGAGTAACAACGGAAACCGGCCATTGCGCCGGTTT nadE nadE nadEp 1822302 forward nadE(1822458,1823285) nadE(1822458,1823285) 1822302-1823285 1822302-1822458 ATTGGGCGCTTTTTCAAGCCCGTGAACGAAACGGCTCCGCTTTCAGAGGATTCCTGTATGACGTTTTAACCACCATTCAGCCCGCTGTCGCTTGTCGTTTCAGTAGCAACGGGTTAGCTTTAAGGAAGTTTTGTCTTTTCTGTCTGGAGGGGTTCAA cho cho chop 1823492 forward cho(1823515,1824402) cho(1823515,1824402) 1823492-1824402 1823492-1823515 ATAACCAGCATTCGGAGTCAACAG ves ves vesp 1824984 reverse ves(1824362,1824937) ves(1824362,1824937) 1824362-1824984 1824937-1824984 ACGGTTACCTGAACGATAACAATGAAAAGAACGGGCCGGGAGCGAGTA spy spy spyp 1825688 reverse spy(1825140,1825625) spy(1825140,1825625) rho-independent(1825057,1825126) 1825057-1825688 1825625-1825688 TCGTCAACACGGCACGCTACTTAAGAAAGCCGTAATAAATAACTGAAAGGAAGGATATAGAATA 1825057-1825140 ATCTTTCAGCCAAAAAACTTAAGACCGCCGGTCTTGTCCACTACCTTGCAGTAATGCGGTGGACAGGATCGGCGGTTTTCTTTT astCADBE astCADBE astCp1 1832013 reverse astC(1830762,1831982) astE(1825955,1826923) 1825955-1832013 1831982-1832013 AAATAACGAATTATTTACTGTAGAGGTCGCTA astCADBE astCADBE astCp3 1832039 reverse astC(1830762,1831982) astE(1825955,1826923) 1825955-1832039 1831982-1832039 GCAAACATTACTTATTATTAACATATAAATAACGAATTATTTACTGTAGAGGTCGCTA astCADBE astCADBE astCp2 1832044 reverse astC(1830762,1831982) astE(1825955,1826923) 1825955-1832044 1831982-1832044 ACAGCGCAAACATTACTTATTATTAACATATAAATAACGAATTATTTACTGTAGAGGTCGCTA xthA xthA xthAp 1832399 forward xthA(1832428,1833234) xthA(1832428,1833234) 1832399-1833234 1832399-1832428 ACTCTTTATCTGAATAAATGGCAGCGACTA ynjE ynjE ynjEp 1839440 forward ynjE(1839467,1840774) ynjE(1839467,1840774) 1839440-1840774 1839440-1839467 CTCAAAACTACAATGTCGGGATTTTCGA ynjF ynjF ynjFp 1841432 reverse ynjF(1840783,1841403) ynjF(1840783,1841403) 1840783-1841432 1841403-1841432 CAGAAAGGCTTTATATTTAAGGAGTGCCTG ynjH ynjH ynjHp1 1842163 reverse ynjH(1841863,1842135) ynjH(1841863,1842135) 1841863-1842163 1842135-1842163 CAGAGACAATAACGTTAAGGAGTTCCCTG ynjH ynjH ynjHp2 1842188 reverse ynjH(1841863,1842135) ynjH(1841863,1842135) 1841863-1842188 1842135-1842188 GCCACCCGGCTACCGTTATCAGTAGCAGAGACAATAACGTTAAGGAGTTCCCTG gdhA gdhA gdhAp 1842308 forward gdhA(1842371,1843714) gdhA(1842371,1843714) 1842308-1843714 1842308-1842371 GCAAAAGCACATGACATAAACAACATAAGCACAATCGTATTAATATATAAGGGTTTTATATCTA ynjI ynjI ynjIp 1844900 reverse ynjI(1843831,1844871) ynjI(1843831,1844871) 1843831-1844900 1844871-1844900 CTCTAAAGTATGTAATAACAGGGAATGTGA ydjA-selD-topB selD-topB selDp1 1848024 reverse selD(1846965,1848008) topB(1844999,1846960) rho-independent(1844932,1844954) 1844932-1848024 1848008-1848024 TTGACAGGAGATGTCCA 1844932-1844999 AGCGAGTGAATCTTTCGTGCTATTCGAGTCATATTCTGAAATATCCAGCGGATCAAGAAAATTCGTTG ydjA-selD-topB selD-topB selDp2 1848029 reverse selD(1846965,1848008) topB(1844999,1846960) rho-independent(1844937,1844959) 1844937-1848029 1848008-1848029 TTGCATTGACAGGAGATGTCCA 1844937-1844999 AGCGAGTGAATCTTTCGTGCTATTCGAGTCATATTCTGAAATATCCAGCGGATCAAGAAAATT ydjA-selD-topB ydjA-selD-topB ydjAp 1848700 reverse ydjA(1848125,1848676) topB(1844999,1846960) rho-independent(1844932,1844954) 1844932-1848700 1848676-1848700 AATATCACGACAGGAGTTAATCAAA 1844932-1844999 AGCGAGTGAATCTTTCGTGCTATTCGAGTCATATTCTGAAATATCCAGCGGATCAAGAAAATTCGTTG gapA-yeaD gapA gapAp7 1862240 forward gapA(1862771,1863766) gapA(1862771,1863766) 1862240-1863766 1862240-1862771 AGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATA gapA-yeaD gapA gapAp6 1862247 forward gapA(1862771,1863766) gapA(1862771,1863766) 1862247-1863766 1862247-1862771 ATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATA msrB msrB msrBp6 1862464 reverse msrB(1862016,1862429) msrB(1862016,1862429) 1862016-1862464 1862429-1862464 GTAATGTGAGCACGATTAAAGTGAGATGTGAGCAAA gapA-yeaD gapA gapAp4 1862526 forward gapA(1862771,1863766) gapA(1862771,1863766) 1862526-1863766 1862526-1862771 GACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATA gapA-yeaD gapA gapAp3 1862597 forward gapA(1862771,1863766) gapA(1862771,1863766) 1862597-1863766 1862597-1862771 GCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATA gapA-yeaD gapA-yeaD gapAp2 1862618 forward gapA(1862771,1863766) yeaD(1863850,1864734) 1862618-1864734 1862618-1862771 GCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGATTCCGCTTGACGCTGCGTAAGGTTTTTGTAATTTTACAGGCAACCTTTTATTCACTAACAAATAGCTGGTGGAATATA gapA-yeaD gapA gapAp1 1862735 forward gapA(1862771,1863766) gapA(1862771,1863766) 1862735-1863766 1862735-1862771 AACCTTTTATTCACTAACAAATAGCTGGTGGAATATA gapA-yeaD gapA gapAp 1862735 forward gapA(1862771,1863766) gapA(1862771,1863766) 1862735-1863766 1862735-1862771 AACCTTTTATTCACTAACAAATAGCTGGTGGAATATA yeaE yeaE yeaEp 1865724 reverse yeaE(1864782,1865636) yeaE(1864782,1865636) 1864782-1865724 1865636-1865724 AATGCATCTTTCCAGGGCATTTTGTGCATAAAAACAGGGCGTCACGCCCTGTTTTGCATTACGGTGGTGCAATACCTGGGAGGAAACAA mipA mipA mipAp 1866506 reverse mipA(1865726,1866472) mipA(1865726,1866472) 1865726-1866506 1866472-1866506 GCCCGCTAAACATTTGTTTAAGGAATGATTAATTG yeaGH yeaGH yeaGp2 1866765 forward yeaG(1866908,1868842) yeaH(1868955,1870238) 1866765-1870238 1866765-1866908 ACGTTGTTCTCATCGTCGATAAAATGGCATGAGAGTTGCTGTGTTTTAGCAAGAGACGTCGTTCAGTTTACCTCTTCCGGGAGCCTCTACTATTCATATGAACGGCTCTTAACCTGTGCTAAAAAACGAAAGGACGGCATACCA yeaGH yeaGH yeaGp1 1866815 forward yeaG(1866908,1868842) yeaH(1868955,1870238) 1866815-1870238 1866815-1866908 AAGAGACGTCGTTCAGTTTACCTCTTCCGGGAGCCTCTACTATTCATATGAACGGCTCTTAACCTGTGCTAAAAAACGAAAGGACGGCATACCA yeaL yeaL yeaLp 1874323 forward yeaL(1874352,1874798) yeaL(1874352,1874798) 1874323-1874798 1874323-1874352 GCTTATTATTTTTTGGCAAGGAAACCACGA nimR yeaM nimRp 1875600 reverse nimR(1874755,1875576) nimR(1874755,1875576) 1874755-1875600 1875576-1875600 AAATTATCGCTAAGTTCGGACAAAA nimT nimT nimTp 1875657 forward nimT(1875673,1876854) nimT(1875673,1876854) 1875657-1876854 1875657-1875673 TAACAATGAGAAGCATA dgcP yeaP yeaPp 1877657 forward dgcP(1877715,1878740) dgcP(1877715,1878740) 1877657-1878740 1877657-1877715 ATCATGCCTGCAAAGATTAAATAATCAGCATTTACCCGCCGTATCCTGGAGTTGTTCCG yeaR-yoaG yeaR-yoaG yeaRp 1879994 reverse yeaR(1879589,1879948) yoaG(1879403,1879585) 1879403-1879994 1879948-1879994 GCTGGAATAAACCGTTTTCAGCGCATTCACCGAAGGAGGGAAAAGGA leuE leuE leuEp 1880800 reverse leuE(1880121,1880759) leuE(1880121,1880759) 1880121-1880800 1880759-1880800 CTTTAATCGCGCATGATCGAAAGATAATTAAAGAGGTTAATG rnd rnd rndp 1888061 reverse rnd(1886864,1887991) rnd(1886864,1887991) 1886864-1888061 1887991-1888061 AGCGTTAAGTCAGTCGTCAGACGCCGGTTAATCCGGCGTTTTTTTTGACGCCCACTAAAGAGAAAACAATT fadD-sroD fadD-sroD fadDp 1889807 reverse fadD(1888061,1889746) sroD(1888017,1888102) rho-independent(1888017,1888043) 1888017-1889807 1889746-1889807 AACGGCATGTATATCATTTGGGGTTGCGATGACGACGAACACGCATTTTAGAGGTGAAGAAT tsaB-yeaY yeaY yeaYp 1890561 reverse yeaY(1889951,1890532) yeaY(1889951,1890532) 1889951-1890561 1890532-1890561 TATGCCCTGAGAAAAAAAGGAGTCGCACCA yoaC yoaC yoaCp1 1893966 forward yoaC(1894133,1894432) yoaC(1894133,1894432) 1893966-1894432 1893966-1894133 AAATTTCTCCATCTTACTGGATAACACACCATGAGCTGCTACCTTTAAAACACCTGAATGTCAACAGGTTAACTCGTGCCATATCGTTATAATCCCTTTGATATTAGATGCAAATTAAGGTCATATATAGCCTTATCGATAACATGGTTAATTTTAAGGATAAGAATA sdaA sdaA sdaAp 1896809 forward sdaA(1896932,1898296) sdaA(1896932,1898296) rho-independent(1898307,1898331) 1896809-1898331 1896809-1896932 ATCGCGGTTTTTGATTAGTTTAATTCATGTGAATAGTTAAGCCAGTCGCCGCGTTCCCTCTTACACTATGCGCTGTTATTAGTTCGTTACTGGAAGTCCAGTCACCTTGTCAGGAGTATTATCG 1898296-1898331 ATACTTCTTACTCGCCCATCTGCAACGGATGGGCGA yoaE yoaE yoaEp 1901772 reverse yoaE(1900029,1901585) yoaE(1900029,1901585) 1900029-1901772 1901585-1901772 CCCGTTTAACAACCATGGAGTATAGGGCAGTAGCCCGCAGTATGGATCGTCACCGACGTCATTTCAGCATCAGGCCTTTTAACGCCTGCCTTTCTGGCACTCTATGCCGCACCTTTCGTTTGCATTTTGTCGTTACGCCTGCATTATTTCTGGCGTCGAATAGCTATTCCTTAAGCAGGAGCTTGTCA manXYZ manXYZ manXp 1901933 forward manX(1902048,1903019) manZ(1903895,1904746) 1901933-1904746 1901933-1902048 GCGAAACGCAGGGGTTTTTGGTTGTAGCCCTTATCTGAATCGATTCGATTGTGGACGACGATTCAAAAATACATCTGGCACGTTGAGGTGTTAACGATAATAAAGGAGGTAGCAAG mntP mntP mntPp 1905459 forward mntP(1905688,1906254) mntP(1905688,1906254) 1905459-1906254 1905459-1905688 GCCCTCATTTGGGGAGTAGCCGATTTCCAGATTCCGGAAATGTACGTGTCAACATACTCGTTGCAAAACGTGGCACGTACGGACTGAATACTTTCAGTCAGGCGAGACCATATGCACATCAATCGCTATGCCTGCATGAACGCGAAAACCATCACGGCTTGTTGTTCATGTATGCATGTTTGCTGGGGGCGATGATGTGTTTTATGGATACCCCGGTCAGGACATTGTCA yobF-cspC yobF-cspC yobFp2 1907617 reverse yobF(1907448,1907591) cspC(1907226,1907435) 1907226-1907617 1907591-1907617 GGGTTAAACGAGGTACAGTTCTGTTTA yobF-cspC yobF-cspC yobFp1 1907793 reverse yobF(1907448,1907591) cspC(1907226,1907435) 1907226-1907793 1907591-1907793 ACGCCAGTTTAAGTATCTGCCTGAACTGGCAAGGTTAAGCACAATGATATATCGGCGCGTATTCCGTTGCATAAGTGTGCAAAAAAAGTGGAAGACGTATCGAGATTTGTGCGTCTGATCGAGACATGTTTAAAAATGGCTTGCCATAATTAACGTTGTATGTGATAACAGATTTCGGGTTAAACGAGGTACAGTTCTGTTTA mgrB mgrB mgrBp 1908792 reverse mgrB(1908623,1908766) mgrB(1908623,1908766) 1908623-1908792 1908766-1908792 ATAAGGTAGGTGAAACGGAGATTGGAG htpX htpX htpXp 1912618 reverse htpX(1911695,1912576) htpX(1911695,1912576) rho-independent(1911652,1911679) 1911652-1912618 1912576-1912618 ATCGCATATTGCGTTTTGTTAAACTGAGGTAAAAAGAAAATTA 1911652-1911695 ATATGAAGTAAATACTAAAAAGCGCGTCCTGATCGACGCGCTTT ryeA ryeA ryeAp 1923064 forward ryeA(1923066,1923337) ryeA(1923066,1923337) 1923064-1923337 1923064-1923066 ATA sdsR-pphA sdsR sdsRp 1923207 reverse sdsR(1923104,1923207) sdsR(1923104,1923207) 1923104-1923207 1923207-1923207 G sdsR-pphA sdsR-pphA sdsRp 1923207 reverse sdsR(1923104,1923207) pphA(1922313,1922969) 1922313-1923207 1923207-1923207 G sdsR-pphA sdsR-pphA pphAp 1923385 reverse sdsR(1923104,1923207) pphA(1922313,1922969) 1922313-1923385 1923207-1923385 CGAGCTGAAAAACTCTGTTAATTACCTAAAATAGCCTTTTGATTTCCAATAAAAAAACCGCCTCAGTTCTTTCACCAGAACGGGCGGTTTTTAACATTTCAGCTGATGACCACCACGCTTTTTATTGACCATTTTGCACGCAAACTGGAAAACCTGGCGTCGTCATCTATTCTTAAAGG ptrB ptrB ptrBp 1928865 reverse ptrB(1926779,1928839) ptrB(1926779,1928839) 1926779-1928865 1928839-1928865 ATGTTTCAACCAGAAAGAACAATAACA yebE yebE yebEp 1929732 reverse yebE(1929048,1929707) yebE(1929048,1929707) 1929048-1929732 1929707-1929732 TAAAAATGGTTATTGAGGAGCAAATA yebG yebG yebGp 1930765 reverse yebG(1930457,1930747) yebG(1930457,1930747) 1930457-1930765 1930747-1930765 TATTATGAGAGGCTGCAAA purT purT purTp 1930857 forward purT(1930881,1932059) purT(1930881,1932059) 1930857-1932059 1930857-1930881 GGAATTAATCAGGGGATATTCGTTA edd-eda eda edap3 1932784 reverse eda(1932115,1932756) eda(1932115,1932756) rho-independent(1932085,1932105) 1932085-1932784 1932756-1932784 ATTTGTAATCAGGCGAGAGAAAACTCTGA 1932085-1932115 AAAGTCAAAATGCCCGATCGAGGATCGGGCA edd-eda eda edap2 1932799 reverse eda(1932115,1932756) eda(1932115,1932756) rho-independent(1932085,1932105) 1932085-1932799 1932756-1932799 TTTTTAAGACGACAAATTTGTAATCAGGCGAGAGAAAACTCTGA 1932085-1932115 AAAGTCAAAATGCCCGATCGAGGATCGGGCA edd-eda eda edap1 1933109 reverse eda(1932115,1932756) eda(1932115,1932756) rho-independent(1932085,1932105) 1932085-1933109 1932756-1933109 ACCGGTGTTTCAAAATTGCGTTAGTTACCGATGGACGACTCTCCGGCGCTTCAGGTAAAGTGCCGTCAGCTATCCACGTAACACCAGAAGCCTACGATGGCGGGCTGCTGGCAAAAGTGCGCGACGGGGACATCATTCGTGTGAATGGACAGACAGGCGAACTGACGCTGCTGGTAGACGAAGCGGAACTGGCTGCTCGCGAACCGCACATTCCTGACCTGAGCGCGTCACGCGTGGGAACAGGACGTGAATTATTCAGCGCCTTGCGTGAAAAACTGTCCGGTGCCGAACAGGGCGCAACCTGTATCACTTTTTAAGACGACAAATTTGTAATCAGGCGAGAGAAAACTCTGA 1932085-1932115 AAAGTCAAAATGCCCGATCGAGGATCGGGCA edd-eda edd-eda eddp 1934713 reverse edd(1932793,1934604) eda(1932115,1932756) rho-independent(1932085,1932105) 1932085-1934713 1934604-1934713 AAACGTTTTTGCCCTATGAGCTCCGGTTACAGGCGTTTCAGTCATAAATCCTCTGAATGAAACGCGTTGTGAATCATCCTGCTCTGACAACTCAATTTCAGGAGCCTTTA 1932085-1932115 AAAGTCAAAATGCCCGATCGAGGATCGGGCA zwf zwf zwfp 1936376 reverse zwf(1934839,1936314) zwf(1934839,1936314) 1934839-1936376 1936314-1936376 GTAAGAAAATTACAAGTATACCCTGGCTTAAGTACCGGGTTAGTTAACTTAAGGAGAATGACA pykA pykA pykAp2 1937494 forward pykA(1937649,1939091) pykA(1937649,1939091) 1937494-1939091 1937494-1937649 GTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACA pykA pykA pykAp3 1937494 forward pykA(1937649,1939091) pykA(1937649,1939091) 1937494-1939091 1937494-1937649 GTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACA pykA pykA pykAp1 1937544 forward pykA(1937649,1939091) pykA(1937649,1939091) 1937544-1939091 1937544-1937649 CTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACA pykA pykA pykAp 1937544 forward pykA(1937649,1939091) pykA(1937649,1939091) 1937544-1939091 1937544-1937649 CTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACA znuCB znuCB znuCp 1942634 forward znuC(1942662,1943417) znuB(1943414,1944199) 1942634-1944199 1942634-1942662 TCATGACTACTGCAAGACTAAAATTAACA znuA znuA znuAp 1942661 reverse znuA(1941651,1942583) znuA(1941651,1942583) 1941651-1942661 1942583-1942661 GTTAATTTTAGTCTTGCAGTAGTCATGAAATGTTATAATATCACACTTCTCATATTCATTACGATTATTGGTCGCATTA ruvAB ruvAB ruvAp2 1946016 reverse ruvA(1945365,1945976) ruvB(1944346,1945356) rho-independent(1944273,1944303) 1944273-1946016 1945976-1946016 CATACAGCATTATCTTTGATTCATTACGCAGGAGCGTCATG 1944273-1944346 AGTCGGATTGGTCGCTCGCGCCGCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGG ruvAB ruvAB ruvAp2 1946016 reverse ruvA(1945365,1945976) ruvB(1944346,1945356) rho-independent(1944219,1944248) 1944219-1946016 1945976-1946016 CATACAGCATTATCTTTGATTCATTACGCAGGAGCGTCATG 1944219-1944346 AGTCGGATTGGTCGCTCGCGCCGCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGAC ruvAB ruvAB ruvAp1 1946024 reverse ruvA(1945365,1945976) ruvB(1944346,1945356) rho-independent(1944273,1944303) 1944273-1946024 1945976-1946024 TTTTTTATCATACAGCATTATCTTTGATTCATTACGCAGGAGCGTCATG 1944273-1944346 AGTCGGATTGGTCGCTCGCGCCGCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGG ruvAB ruvAB ruvAp1 1946024 reverse ruvA(1945365,1945976) ruvB(1944346,1945356) rho-independent(1944219,1944248) 1944219-1946024 1945976-1946024 TTTTTTATCATACAGCATTATCTTTGATTCATTACGCAGGAGCGTCATG 1944219-1944346 AGTCGGATTGGTCGCTCGCGCCGCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGAC yebB yebB yebBp1 1946110 forward yebB(1946251,1946853) yebB(1946251,1946853) 1946110-1946853 1946110-1946251 ACAGGTTATATTGGAAGCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACG yebB yebB yebBp2 1946144 forward yebB(1946251,1946853) yebB(1946251,1946853) 1946144-1946853 1946144-1946251 CATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACG nudB-yebC-ruvC ruvC ruvCp 1947439 reverse ruvC(1946855,1947376) ruvC(1946855,1947376) rho-independent(1946815,1946854) 1946815-1947439 1947376-1947439 TCTCTGATGAGGTCGCAGCGACTCTCTGATGAGGCCTGCTAAACAGCAAAACGGAGACGCGTGA 1946815-1946855 AGTTATACCGCCTCGGTCAGTTCCGGCTGAGGCGTTTCCAC nudB-yebC-ruvC yebC-ruvC yebCp 1948185 reverse yebC(1947411,1948151) ruvC(1946855,1947376) rho-independent(1946815,1946854) 1946815-1948185 1948151-1948185 GCCTGAACAGGCAGGGCTATCTGGAGATATTTTTA 1946815-1946855 AGTTATACCGCCTCGGTCAGTTCCGGCTGAGGCGTTTCCAC nudB-yebC-ruvC nudB-yebC-ruvC nudBp 1948674 reverse nudB(1948180,1948632) ruvC(1946855,1947376) rho-independent(1946815,1946854) 1946815-1948674 1948632-1948674 TATGTGAATGGGATGAGCGAAGGCAGTCAACGAAGAGGCAGCG 1946815-1946855 AGTTATACCGCCTCGGTCAGTTCCGGCTGAGGCGTTTCCAC aspS aspS aspSp2 1950617 reverse aspS(1948750,1950522) aspS(1948750,1950522) rho-independent(1948662,1948693) 1948662-1950617 1950522-1950617 CTTTTTTCATTCAGTTGTGACATACAGCTAACGCTGCGACTTGGTCACCTGCGCAGCAGGGGGCATCCGCCGGCAGCTAAGTTAAGGGATATCTCA 1948662-1948750 ATATGACTCAAATACACGAAATCATTCGCGTTGCATCGAGGCGGCAACTGAGTGAACTCCCATGAGCATAGATAACTATGTGAATGGGA aspS aspS aspSp1 1950701 reverse aspS(1948750,1950522) aspS(1948750,1950522) rho-independent(1948662,1948693) 1948662-1950701 1950522-1950701 CAGGCCCGATATAAAGTGGTAACGAGGCGTTCCAGCGCGGGCCAGGCTCTTACGGTGCGGCAGAATTTCCAGTATAATAGCCGCCTTTTTTCATTCAGTTGTGACATACAGCTAACGCTGCGACTTGGTCACCTGCGCAGCAGGGGGCATCCGCCGGCAGCTAAGTTAAGGGATATCTCA 1948662-1948750 ATATGACTCAAATACACGAAATCATTCGCGTTGCATCGAGGCGGCAACTGAGTGAACTCCCATGAGCATAGATAACTATGTGAATGGGA micL micL micLp1 1958747 reverse micL(1958441,1958520) micL(1958441,1958520) 1958441-1958747 1958520-1958747 ATGGCCGGAGCAGGAGTCCGTGCAGAAAACCTGCACCACTTCCTCGATGCCGGAGTGCTGGAAGTCCATAGCTCCGCGGGAGCGTGGCAAGCCTCACCGATGCGTTATCGTAATCAAGGATTGTCCATGTCATCAGATGAACACGCGGACGAGTATTCGCGTTATATCGTAGACGGGGCGGCGGTTGCTGAAATGAAAGGAATCATTGAACGCCATCAGGCCAAATGA micL micL micLp2 1958986 reverse micL(1958441,1958520) micL(1958441,1958520) 1958441-1958986 1958520-1958986 TTCTCGATGTTGACGGGAATGTCGATATGCCACGAATGGAAAAAATAATGGCTGCTGCCGGTCCGCTGGCAGTGACTTTTCATCGCGCCTTCGATATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGCAAAAATCAGACGCACTGCAAGGTTTATCAAAAATTATGGAACTTATTGCCCATCGTGATGCTCCAATCATTATGGCCGGAGCAGGAGTCCGTGCAGAAAACCTGCACCACTTCCTCGATGCCGGAGTGCTGGAAGTCCATAGCTCCGCGGGAGCGTGGCAAGCCTCACCGATGCGTTATCGTAATCAAGGATTGTCCATGTCATCAGATGAACACGCGGACGAGTATTCGCGTTATATCGTAGACGGGGCGGCGGTTGCTGAAATGAAAGGAATCATTGAACGCCATCAGGCCAAATGA argS argS argSp 1960001 forward argS(1960062,1961795) argS(1960062,1961795) rho-independent(1961817,1961843) 1960001-1961843 1960001-1960062 CCCTAATTTCTTTAACTGGTGCGGGCAATTTTTGCTCGCTTCATCAATGTAAGGTATTCCGG 1961795-1961843 ATCGATTTTTCGTGAGAGTGAAGCCTGATCAGGGTTAGCCGATCAGGCT yecT yecT yecTp 1961935 forward yecT(1961972,1962460) yecT(1961972,1962460) 1961935-1962460 1961935-1961972 AGGGAAACGATAACGGTTGAATTTAAGGAATACCGCAG flhBAE flhBAE flhBp 1966216 reverse flhB(1965043,1966191) flhE(1962580,1962972) 1962580-1966216 1966191-1966216 TAATACTCTTTCCAGGATTGGCGACG tar-tap-cheRBYZ tar-tap-cheRBYZ tarp 1972716 reverse tar(1971030,1972691) cheZ(1966393,1967037) 1966393-1972716 1972691-1972716 CAACTTGTTTTCAGGAAGGTGCCTTA motRAB-cheAW motRAB-cheAW motRp 1977302 reverse motR(1977208,1977302) cheW(1972836,1973339) rho-independent(1972771,1972825) 1972771-1977302 1977302-1977302 A 1972771-1972836 ATTCTCCCGATTTCCTCAATTGAAATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTT flhDC flhDC flhDp 1978395 reverse flhD(1977847,1978197) flhC(1977266,1977844) rho-independent(1977200,1977254) 1977200-1978395 1978197-1978395 GATTTAGGAAAAATCTTAGATAAGTGTAAAGACCCATTTCTATTTGTAAGGACATATTAAACCAAAAAGGTGGTTCTGCTTATTGCAGCTTATCGCAACTATTCTAATGCTAATTATTTTTTACCGGGGCTTCCCGGCGACATCACGGGGTGCGGTGAAACCGCATAAAAATAAAGTTGGTTATTCTGGGTGGGAATAA 1977200-1977266 ACTGATACGGTGAGGCGCAACATTCCAGCAGCGGTAACGACGTACCGCTGCTTTTTTTTGCCCCAAT flhDC flhDC flhDp2 1978577 reverse flhD(1977847,1978197) flhC(1977266,1977844) rho-independent(1977200,1977254) 1977200-1978577 1978197-1978577 TCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCATTTATGTTAAGTAATTGAGTGTTTTGTGTGATCTGCATCACGCATTATTGAAAATCGCAGCCCCCCTCCGTTGTATGTGCGTGTAGTGACGAGTACAGTTGCGTCGATTTAGGAAAAATCTTAGATAAGTGTAAAGACCCATTTCTATTTGTAAGGACATATTAAACCAAAAAGGTGGTTCTGCTTATTGCAGCTTATCGCAACTATTCTAATGCTAATTATTTTTTACCGGGGCTTCCCGGCGACATCACGGGGTGCGGTGAAACCGCATAAAAATAAAGTTGGTTATTCTGGGTGGGAATAA 1977200-1977266 ACTGATACGGTGAGGCGCAACATTCCAGCAGCGGTAACGACGTACCGCTGCTTTTTTTTGCCCCAAT insAB5A5B5 insA5B5AB5 insA-5p 1979226 reverse insA5(1978940,1979215) insB5(1978518,1979021) 1978518-1979226 1979215-1979226 GAGGTGCTCCAG otsBA otsA otsAp 1981651 reverse otsA(1980188,1981612) otsA(1980188,1981612) rho-independent(1980096,1980126) 1980096-1981651 1981612-1981651 CATTACAACAAAAAAGAGAAAATAACAGGAGTGATGACTA 1980096-1980188 GGAGCGGTTAATCTCCCGTAAGTGGAACTAACAGCACATCGACCTCACTTGAGGCAATAACTCTTTTCGCCGAGCAGGATGCTCGCGAAAAGA otsBA otsBA otsBp2 1982442 reverse otsB(1981587,1982387) otsA(1980188,1981612) rho-independent(1980096,1980126) 1980096-1982442 1982387-1982442 GTCTGTAAAGCGCGTTCTGCGCAACACAATAAGAAAAGAGAAGGAGGAGAACCGGG 1980096-1980188 GGAGCGGTTAATCTCCCGTAAGTGGAACTAACAGCACATCGACCTCACTTGAGGCAATAACTCTTTTCGCCGAGCAGGATGCTCGCGAAAAGA otsBA otsBA otsBp1 1982465 reverse otsB(1981587,1982387) otsA(1980188,1981612) rho-independent(1980096,1980126) 1980096-1982465 1982387-1982465 CGTCACACTGTCTATACTTACATGTCTGTAAAGCGCGTTCTGCGCAACACAATAAGAAAAGAGAAGGAGGAGAACCGGG 1980096-1980188 GGAGCGGTTAATCTCCCGTAAGTGGAACTAACAGCACATCGACCTCACTTGAGGCAATAACTCTTTTCGCCGAGCAGGATGCTCGCGAAAAGA araFGH araFGH araFp2 1986148 reverse araF(1985139,1986128) araH(1982554,1983540) 1982554-1986148 1986128-1986148 CACTAAAGCTGGAGAGAACCA araFGH araFGH araFp1 1986238 reverse araF(1985139,1986128) araH(1982554,1983540) 1982554-1986238 1986128-1986238 ACACAGTCACTTATCTTTTAGTTAAAAGGTAATGCTTTGTTTTCCGATTAATTTAACGAATGTCATTCGTTTTTGCCCTACACAAAACGACACTAAAGCTGGAGAGAACCA araFGH araFGH araFp3 1986238 reverse araF(1985139,1986128) araH(1982554,1983540) 1982554-1986238 1986128-1986238 ACACAGTCACTTATCTTTTAGTTAAAAGGTAATGCTTTGTTTTCCGATTAATTTAACGAATGTCATTCGTTTTTGCCCTACACAAAACGACACTAAAGCTGGAGAGAACCA ftnB ftnB ftnBp1 1986775 forward ftnB(1986925,1987428) ftnB(1986925,1987428) 1986775-1987428 1986775-1986925 GTTCAGACGTTATTCTTATTTCAGATCATCGTCAGAATTGACTCCACGATCACATTTCGGACCGGCAGAAAGGAATTATTCTGCAAACAGTAATTATGGTGTTTTGATTTATCTTGCACCTCTCCACTTCTGGATATAAGGATATTAGGTA ftnB ftnB ftnBp2 1986799 forward ftnB(1986925,1987428) ftnB(1986925,1987428) 1986799-1987428 1986799-1986925 ATCATCGTCAGAATTGACTCCACGATCACATTTCGGACCGGCAGAAAGGAATTATTCTGCAAACAGTAATTATGGTGTTTTGATTTATCTTGCACCTCTCCACTTCTGGATATAAGGATATTAGGTA azuC azuC azuCp 1988001 reverse azuC(1987873,1987959) azuC(1987873,1987959) 1987873-1988001 1987959-1988001 AAAGACAATAACACCTGTATAACAAATGGTCGGAGTGCCGCGA yecR yecR yecRp 1988200 forward yecR(1988222,1988545) yecR(1988222,1988545) 1988200-1988545 1988200-1988222 CTCTTACTCTTCTGGCTGGACCA ftnA ftnA ftnAp 1988682 forward ftnA(1988716,1989213) ftnA(1988716,1989213) 1988682-1989213 1988682-1988716 ACAGCAACAAATATAACCTTTGTGGAGCACTATCA tyrP tyrP tyrPp2 1989502 forward tyrP(1989681,1990892) tyrP(1989681,1990892) 1989502-1990892 1989502-1989681 AAAAAAAGCCTAGCGTAGCGATTGCCGCTTATGAAGACTTTGCGCCAGCGCAGGACTGAATGCTTTTTATTGTACATTTATATTTACACCATATGTAACGTCGGTTTGACGAAGCAGCCGTTATGCCTTAACCTGCGCCGCAGATATCACTCATAAAGATCGTCAGGACAGAAGAAAGCG tyrP tyrP tyrPp1 1989645 forward tyrP(1989681,1990892) tyrP(1989681,1990892) 1989645-1990892 1989645-1989681 ATATCACTCATAAAGATCGTCAGGACAGAAGAAAGCG glyW-cysT-leuZ-3'ETS- glyW-cysT-leuZ glyWp 1992180 reverse glyW(1992042,1992117) 3'ETS-(1991748,1991814) rho-independent(1991745,1991778) 1991745-1992180 1992117-1992180 GAACGGCGGCACTGATTGCCAGACGATAATAAAATCAAGTGATTAACTGATTGCTTGATGAATG 1991745-1991748 TGTG uvrYC uvrC uvrCp3 1994879 reverse uvrC(1992874,1994706) uvrC(1992874,1994706) 1992874-1994879 1994706-1994879 ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCGTATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGACATTATCAAGTCAG uvrYC uvrYC uvrYp2 1995406 reverse uvrY(1994703,1995359) uvrC(1992874,1994706) 1992874-1995406 1995359-1995406 AATGACTAACTATCAGTAGCGTTATCCCTATTTCTGGAGATATTCCTT yecF yecF yecFp 1995717 forward yecF(1995818,1996042) yecF(1995818,1996042) rho-independent(1996034,1996088) 1995717-1996088 1995717-1995818 CAAAAAACAACCACTGCTATTTTTAGCAAAGCTTATGGTATACTCCGCCGCCTTAACATTTTTCACCGCAAATTTTCATTGCAACATGACGAGGAAAATAAA 1996042-1996088 ATATAAAACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTG sdiA sdiA sdiAp4 1996857 reverse sdiA(1996110,1996832) sdiA(1996110,1996832) 1996110-1996857 1996832-1996857 ACTCTCAGGGGCGTTGCGGTTTACTA sdiA sdiA sdiAp3 1996867 reverse sdiA(1996110,1996832) sdiA(1996110,1996832) 1996110-1996867 1996832-1996867 AATGATACTCACTCTCAGGGGCGTTGCGGTTTACTA sdsN sdsN sdsNp2 1996880 forward sdsN(1996921,1997057) sdsN(1996921,1997057) rho-independent(1997022,1997050) 1996880-1997050 1996880-1996921 TCAAACTATCACATAAATAAGATTTATATATAATTTATATTA sdiA sdiA sdiAp2b 1996893 reverse sdiA(1996110,1996832) sdiA(1996110,1996832) 1996110-1996893 1996832-1996893 ATGTGATAGTTTGAATTATCATTATAAATGATACTCACTCTCAGGGGCGTTGCGGTTTACTA sdiA sdiA sdiAp2 1996897 reverse sdiA(1996110,1996832) sdiA(1996110,1996832) 1996110-1996897 1996832-1996897 ATTTATGTGATAGTTTGAATTATCATTATAAATGATACTCACTCTCAGGGGCGTTGCGGTTTACTA sdiA sdiA sdiAp1b 1996910 reverse sdiA(1996110,1996832) sdiA(1996110,1996832) 1996110-1996910 1996832-1996910 ATATATAAATCTTATTTATGTGATAGTTTGAATTATCATTATAAATGATACTCACTCTCAGGGGCGTTGCGGTTTACTA sdiA sdiA sdiAp1 1996917 reverse sdiA(1996110,1996832) sdiA(1996110,1996832) 1996110-1996917 1996832-1996917 ATAAATTATATATAAATCTTATTTATGTGATAGTTTGAATTATCATTATAAATGATACTCACTCTCAGGGGCGTTGCGGTTTACTA sdsN sdsN sdsNp1 1996921 forward sdsN(1996921,1997057) sdsN(1996921,1997057) rho-independent(1997022,1997050) 1996921-1997050 1996921-1996921 A dcyD-tcyLN dcyD-tcyLN dcyDp 1999508 reverse dcyD(1998494,1999480) tcyN(1997062,1997814) 1997062-1999508 1999480-1999508 ATCACAACAACACACATCGGAGGCTGTTA fliAZ-tcyJ tcyJ tcyJp 2000410 reverse tcyJ(1999585,2000385) tcyJ(1999585,2000385) rho-independent(1999541,1999571) 1999541-2000410 2000385-2000410 AGACATAACAACATTCGGGGTGAATA 1999541-1999585 ATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCGCCTTTTTT fliAZ-tcyJ fliAZY fliAp2 2001808 reverse fliA(2001070,2001789) tcyJ(1999585,2000385) rho-independent(1999541,1999571) 1999541-2001808 2001789-2001808 TAACGCAGGGCTGTTTATCG 1999541-1999585 ATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCGCCTTTTTT fliAZ-tcyJ fliAZY fliAp1 2001819 reverse fliA(2001070,2001789) tcyJ(1999585,2000385) rho-independent(1999541,1999571) 1999541-2001819 2001789-2001819 GATAACTCATATAACGCAGGGCTGTTTATCG 1999541-1999585 ATCAGCATAATGACAAAAAAGGGCGCTTTCACTAGCGCCTTTTTT fliCX fliC fliCp 2003676 reverse fliC(2002110,2003606) fliX(2001912,2002106) 2001912-2003676 2003606-2003676 TGACGGCGATTGAGCCGACGGGTGGAAACCCAATACGTAATCAACGACTTGCAATATAGGATAACGAATCA fliDST fliDST fliDp2 2003817 forward fliD(2003872,2005278) fliT(2005713,2006078) rho-independent(2006111,2006165) 2003817-2006165 2003817-2003872 TCAGACCGATAACCCCGGTATTCGTTTTACGTGTCGAAAGATAAAAGGAAATCGCA 2006078-2006165 AATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATC amyA amyA amyAp 2006115 forward amyA(2006156,2007643) amyA(2006156,2007643) rho-independent(2007642,2007674) 2006115-2007674 2006115-2006156 ACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAA 2007643-2007674 AATTCATCCCCGGCGGCAAGCCGGGGAGATTT fliE fliE fliEp1 2013036 reverse fliE(2012700,2013014) fliE(2012700,2013014) 2012700-2013036 2013014-2013036 AGAAATTATCCGGGAGACGAGAA fliE fliE fliEp2 2013093 reverse fliE(2012700,2013014) fliE(2012700,2013014) 2012700-2013093 2013014-2013093 TTTTTTGTTGCTATTTAGCGCCTTTGTCTTATTGACTTACTGGTAGGCTTTGCTACCAGAAATTATCCGGGAGACGAGAA fliFGHIJK fliFGHIJK fliFp1 2013146 forward fliF(2013229,2014887) fliK(2018386,2019513) 2013146-2019513 2013146-2013229 AATTTTTCGAGTTTGCTGACCCGGGAGTGAGTCTTGTTCCACTTTGCCAATAACGCCGTCCATAATCAGCCACGAGGTGCGCGA fliFGHIJK fliFGHIJK fliFp2 2013205 forward fliF(2013229,2014887) fliK(2018386,2019513) 2013205-2019513 2013205-2013229 CCATAATCAGCCACGAGGTGCGCGA fliLMNOPQR fliLMNOPQR fliLp1 2019584 forward fliL(2019618,2020082) fliR(2022893,2023678) 2019584-2023678 2019584-2019618 GATAAGCAGTAGCGACACAGGAAGACCGCAACACA fliLMNOPQR fliLMNOPQR fliLp2 2019595 forward fliL(2019618,2020082) fliR(2022893,2023678) 2019595-2023678 2019595-2019618 GCGACACAGGAAGACCGCAACACA rcsA rcsA rcsAp 2023836 forward rcsA(2023968,2024591) rcsA(2023968,2024591) 2023836-2024591 2023836-2023968 ACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGAATTATCGTTACGCATTGAGTGAGGGTATGCCA dsrA dsrA dsrAp 2025313 reverse dsrA(2025223,2025313) dsrA(2025223,2025313) 2025223-2025313 2025313-2025313 A rseX rseX rseXp 2033649 forward rseX(2033649,2033739) rseX(2033649,2033739) rho-independent(2033715,2033731) 2033649-2033731 2033649-2033649 T hchA hchA hchAp2 2035630 forward hchA(2035835,2036686) hchA(2035835,2036686) 2035630-2036686 2035630-2035835 AAGCCACTTGCGACGACGTTGCTCAATAAGGAAAATTTGGCGTGAATAATATTCAACACCAGTGCAGCATCATCATTACATACTTACAGCCGCCGACTACCGCTTTCGATATATTGACTCAATTTTCCAGCCTGGTTAAAAATAGCGACCAGCTCAGTCGCAAATATAGTGACTACCCTAACTAAGCAACAATAAGGAATACACTA hchA hchA hchAp1 2035780 forward hchA(2035835,2036686) hchA(2035835,2036686) 2035780-2036686 2035780-2035835 AGCTCAGTCGCAAATATAGTGACTACCCTAACTAAGCAACAATAAGGAATACACTA hiuH hiuH hiuHp 2038840 forward hiuH(2038956,2039369) hiuH(2038956,2039369) 2038840-2039369 2038840-2038956 AAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACA zinT zinT zinTp 2041346 forward zinT(2041375,2042025) zinT(2041375,2042025) 2041346-2042025 2041346-2041375 CATATACATTAACTCTGGAGGAAACTGTTT serU serU serUp 2043562 reverse serU(2043468,2043557) serU(2043468,2043557) 2043468-2043562 2043557-2043562 TGAACG asnT asnT asnTp 2044541 forward asnT(2044549,2044624) asnT(2044549,2044624) rho-independent(2044704,2044750) 2044541-2044750 2044541-2044549 CACACGATT 2044624-2044750 AAATTCTAAAAATTCGCTTTTTTAGCGCAATGTCACTGACCTTAGTTGAACATTGTTTTTTAACGGATAGCGGGTTTTTAACATCTTAAGCGCCCTCGACCTTTATGGTTGAGGGCGTTTTGCTATG shiA shiA shiAp 2053566 forward shiA(2053643,2054959) shiA(2053643,2054959) 2053566-2054959 2053566-2053643 GTTCGTTTATAGATCGACGGCAATGTGAGTTACCTTTTCCATACTAATTATAAAAAGACAGTACAAACAGGATCATTA amn amn amnp1 2055031 forward amn(2055061,2056515) amn(2055061,2056515) 2055031-2056515 2055031-2055061 TGCGGTAATTGTATGGAACAGGAGACACACA asnU asnU asnUp 2059845 forward asnU(2059851,2059926) asnU(2059851,2059926) rho-independent(2059930,2059966) 2059845-2059966 2059845-2059851 AACGATT 2059926-2059966 AAATTCCTGAAAAGCCCGCTTTTATAGCGGGATTTTTGCTA cbl cbl cblp 2060941 reverse cbl(2059964,2060914) cbl(2059964,2060914) 2059964-2060941 2060914-2060941 GGAAATCTGAACTGCCCGGAGTTTACCG nac nac nacp 2061978 reverse nac(2061016,2061933) nac(2061016,2061933) 2061016-2061978 2061933-2061978 AAGTAATGGCGGCACTTGGGCCGATTCTTAAAAACCGGAGGCAACA asnV asnV asnVp 2062252 forward asnV(2062260,2062335) asnV(2062260,2062335) 2062252-2062335 2062252-2062260 CACACGATT cobUST cobUST cobUp1 2065874 reverse cobU(2065219,2065764) cobT(2063388,2064467) 2063388-2065874 2065764-2065874 AATTATATTACGCGCAGTATTAATCGCGTAAATGTTTTGCGGTCAGCAACGGTGGGGGATCCATTGTTCTGTTCAATGAATACCATCATACATTTGAATCAGGAGTCGGTA cobUST cobUST cobUp2 2065972 reverse cobU(2065219,2065764) cobT(2063388,2064467) 2063388-2065972 2065764-2065972 GCTGTCAATGACGCATTTTGTCGGACGTTAACACGAGAAAGTCTGGCTATTCCGTAATGCCATCTTATTTCGTAATGGATTGAGAATGCTGGATTTTTAATTATATTACGCGCAGTATTAATCGCGTAAATGTTTTGCGGTCAGCAACGGTGGGGGATCCATTGTTCTGTTCAATGAATACCATCATACATTTGAATCAGGAGTCGGTA isrC-flu isrC-flu flup 2071317 forward isrC(2071317,2071511) flu(2071539,2074658) rho-independent(2071478,2071511) 2071317-2071511 2071317-2071317 G isrC-flu flu flup1 2071474 forward flu(2071539,2074658) flu(2071539,2074658) 2071474-2074658 2071474-2071539 ACCTGCCGGTATCCACGTTTGTGGGTACCGGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGA isrC-flu flu flup2 2071503 forward flu(2071539,2074658) flu(2071539,2074658) 2071503-2074658 2071503-2071539 GGCTTTTTTATTCACCCTCAATCTAAGGAAAAGCTGA sbmC sbmC sbmCp2 2081303 reverse sbmC(2080789,2081262) sbmC(2080789,2081262) 2080789-2081303 2081262-2081303 GCAACTATACTGTATATAAAAACAGTATCAATGGAGGCGTCA sbmC sbmC sbmCp1 2081325 reverse sbmC(2080789,2081262) sbmC(2080789,2081262) 2080789-2081325 2081262-2081325 CATTCCTTGTGGTTTTAATTTTGCAACTATACTGTATATAAAAACAGTATCAATGGAGGCGTCA sbcB sbcB sbcBp 2082728 forward sbcB(2082756,2084183) sbcB(2082756,2084183) 2082728-2084183 2082728-2082756 AGACAGCAGAAATAACGGATTTAACCTAA tsuAB yeeED yeeEp 2085552 reverse tsuA(2084467,2085525) tsuB(2084226,2084453) 2084226-2085552 2085525-2085552 ATTAACATTCATCTGGTTAATTAATTTA yefM-yoeB yefM-yoeB yefMp 2089733 reverse yefM(2089462,2089713) yoeB(2089211,2089465) 2089211-2089733 2089713-2089733 GTACAAAAGAGGAGATTGACA hisLGDCBHAFI hisLGDCBHAFI hisLp 2089965 forward hisL(2089996,2090046) hisI(2096614,2097225) 2089965-2097225 2089965-2089996 ATCAGTTGAATAAACATTCACAGAGACTTTTA hisLGDCBHAFI hisL hisLp 2089965 forward hisL(2089996,2090046) hisL(2089996,2090046) rho-independent(2090108,2090140) 2089965-2090140 2089965-2089996 ATCAGTTGAATAAACATTCACAGAGACTTTTA 2090046-2090140 GTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCCCGGAAGATCACCTTCCGGGGGCTTT hisLGDCBHAFI hisBHAFI hisBp 2093360 forward hisB(2093468,2094535) hisI(2096614,2097225) 2093360-2097225 2093360-2093468 ACGTGATCAGAATAAACAACCCTCTTTAAGCGGCTGCCTGCGAATTACCGTCGGAACCCGTGAAGAAAGCCAGCGCGTCATTGACGCCTTACGTGCGGAGCAAGTTTGA gnd gnd gndp 2101324 reverse gnd(2099862,2101268) gnd(2099862,2101268) 2099862-2101324 2101268-2101324 GAACATTCCAGGCCGCGAGCATTCAGCGCGGTGATCACACCTGACAGGAGTATGTAA galF galF galFp 2114351 reverse galF(2113434,2114327) galF(2113434,2114327) 2113434-2114351 2114327-2114351 ACCATTTTACAGGTGGATGAAATAA wza-wzb-wzc-wcaAB wzbc wzap2 2137193 reverse wza(2136104,2137243) wzc(2133490,2135652) 2133490-2137193 2137243-2137193 wza-wzb-wzc-wcaAB wza-wzb-wzc-wcaAB wzap1 2137583 reverse wza(2136104,2137243) wcaB(2132067,2132555) 2132067-2137583 2137243-2137583 GCATTATTGGAAAGCCAATATTCAATTACCATAATGTCACCTTATATTCGGAAGTTAATTTCCGTAATAACCCTTTCTCATCAACGACTGCATGCTGAGAGGGTGTGAAAAATTAAACTAAATCAGTGTATTGGTAGCTAAAAAGCCAGGGGCGGTAGCGTGTCTGGATGCCTGAAAGACCAGTCTGAATTATTCTGTCAATAGCCTGCGGATGAAATCAATTTTTTTAGGACTGATGCCAGTTAAATTTTTATTCAATTAACTGCAAGGTAAATGTGCATGGCGACATTGCTATTAATAGTGCACAGGATAATTACTCTGCCAAAGTGATAAATAAACAA yegH yegH yegHp 2137863 forward yegH(2137902,2139485) yegH(2137902,2139485) 2137863-2139485 2137863-2137902 GTGACATTTGTCATACAACGAATAGGTTTTGTACTTACTA alkA alkA alkAp 2147559 reverse alkA(2146692,2147540) alkA(2146692,2147540) 2146692-2147559 2147540-2147559 GGATGAATAAGGAGATGCGA alkA alkA alkAp2 2147559 reverse alkA(2146692,2147540) alkA(2146692,2147540) 2146692-2147559 2147540-2147559 GGATGAATAAGGAGATGCGA sibA sibA sibAp 2153311 forward sibA(2153311,2153454) sibA(2153311,2153454) 2153311-2153454 2153311-2153311 G sibB sibB sibBp 2153646 forward sibB(2153646,2153781) sibB(2153646,2153781) 2153646-2153781 2153646-2153646 G mdtABCD-baeSR mdtABCD-baeSR mdtAp 2153979 forward mdtA(2154016,2155263) baeR(2164276,2164998) 2153979-2164998 2153979-2154016 ATTCCGCGAAACGTTTCAGGAAGAGAAACTCTTAACGA cyaR cyaR cyaRp 2167114 forward cyaR(2167114,2167200) cyaR(2167114,2167200) rho-independent(2167162,2167200) 2167114-2167200 2167114-2167114 G cyaR cyaR cyaRp2 2167114 forward cyaR(2167114,2167200) cyaR(2167114,2167200) rho-independent(2167162,2167200) 2167114-2167200 2167114-2167114 G cyaR cyaR cyaRp3 2167114 forward cyaR(2167114,2167200) cyaR(2167114,2167200) rho-independent(2167162,2167200) 2167114-2167200 2167114-2167114 G yegRZ yegRZ yegRp 2168349 reverse yegR(2167989,2168306) yegZ(2167602,2167820) 2167602-2168349 2168306-2168349 AAACACTAGAGAGTGTCGTTGGTATTTAATGGGGGAAGGTGAGA gatYZABCD gatZABCD gatZp 2176432 reverse gatZ(2175059,2176321) gatD(2171833,2172873) 2171833-2176432 2176321-2176432 ATTATTTGCAGTCGGCTAAATCCGCAATGCGCGATGTGGTGAGCAAAGTGATTGCCGATTGTGGCTGCGAGGGCAGGGCATAACGCACCTGCCATTTAACAAGGAAAAAACA gatYZABCD gatYZABCD gatYp 2177234 reverse gatY(2176350,2177204) gatD(2171833,2172873) 2171833-2177234 2177204-2177234 GAAATCGAAAACAAACGACAGGATATGAAAA fbaB fbaB fbaBp 2178667 reverse fbaB(2177512,2178564) fbaB(2177512,2178564) 2177512-2178667 2178564-2178667 ATGGAAAAACTCGCCCGTAACGACCAGGATTATGATTGCCCGCAAAAGGCGGGCCAGGACAATCCATAGCCGATATCCAATCGGAATTTACGGGAGCATAGTAA yegTUV yegTUV yegTp 2178781 forward yegT(2178821,2180098) yegV(2181096,2182061) 2178781-2182061 2178781-2178821 ATCGCGTACCTTACATTACCTGTCATGAAGGAATTAAAAGA thiMD thiMD thiMp 2185451 reverse thiM(2184513,2185301) thiD(2183716,2184516) 2183716-2185451 2185301-2185451 CTGCGATTTATCATCGCAACCAAACGACTCGGGGTGCCCTTCTGCGTGAAGGCTGAGAAATACCCGTATCACCTGATCTGGATAATGCCAGCGTAGGGAAGTCACGGACCACCAGGTCATTGCTTCTTCACGTTATGGCAGGAGCAAACTA rcnAB rcnAB rcnAp 2185827 forward rcnA(2185917,2186741) rcnB(2186960,2187298) 2185827-2187298 2185827-2185917 ATCATAGCACTATTAATCTACTGGGGGGTAGTATCAGGTACTGGGGGGGAGTAGAATCAGATTGCCGAATTAATACTAAGAATTATTATCA rcnR rcnR rcnRp 2185903 reverse rcnR(2185524,2185796) rcnR(2185524,2185796) 2185524-2185903 2185796-2185903 AGTATTAATTCGGCAATCTGATTCTACTCCCCCCCAGTACCTGATACTACCCCCCAGTAGATTAATAGTGCTATGATTTTTCATATTCTTGTTAACCAGGTGTTGCCA metG metG metGp2 2193758 forward metG(2194300,2196333) metG(2194300,2196333) rho-independent(2196343,2196366) 2193758-2196366 2193758-2194300 CGCCCCTTCTGCCGCCAGCGCCAGTGCCAGGTTTACCGCCGTGGACGATTTACCCACGCCGCCTTTACCGGAACTCACCGCGATAATGTTCTTCACACCGTTAATTCCCGGCTGATTCTTCACGCGTTTCAGAGTGGCTATGTTATGCGACAGTTTCCAGTCGATAGCTTTCGCCCCGGTGATGCGCAGCAGTTCGGCGCTACATTGCTCTTTTAACTCTTCGAACGCGCTATGCCAGACAAACGGCATAACCAGTTCCACATGCAACGTGTCGTCCATCCAGGCGACATGGTGCAACGCTTTCAGCGTGGTGAGGTTATGCTTCAGGGTTGGGTGCTGAAAATTGGCCAGTGTCCCGGCGACCATTGCGCGCAAGGCTTCTGGTGATTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTAACCCCTTTTCACTATTAAGAAGTAATGCCTACTA 2196333-2196366 ATCCCCCTTCAAGGCGCTGCATCGACAGCGCCTT mrp mrp mrpp 2194203 reverse mrp(2193059,2194168) mrp(2193059,2194168) rho-independent(2192993,2193034) 2192993-2194203 2194168-2194203 AGCTGATGGTTTATCTATACAAAAAAGGAGTCGGGA 2192993-2193059 ACGCCTATTAACCATTCTGGTTATTCTTCATACACCGCAGAGATGTTACATTGATGCGGTGTATTAG metG metG metGp1 2194269 forward metG(2194300,2196333) metG(2194300,2196333) rho-independent(2196343,2196366) 2194269-2196366 2194269-2194300 CCCTTTTCACTATTAAGAAGTAATGCCTACTA 2196333-2196366 ATCCCCCTTCAAGGCGCTGCATCGACAGCGCCTT yehF yehF yehFp 2196445 forward yehF(2196474,2197298) yehF(2196474,2197298) 2196445-2197298 2196445-2196474 TCAACTGGATAAAATTACAGGGATGCAGAA mlrA mlrA mlrAp 2214840 forward mlrA(2214866,2215597) mlrA(2214866,2215597) 2214840-2215597 2214840-2214866 GGGACCTCGCGAGCAAGGGTGAGACGA mlrA mlrA mlrAp2 2214840 forward mlrA(2214866,2215597) mlrA(2214866,2215597) 2214840-2215597 2214840-2214866 GGGACCTCGCGAGCAAGGGTGAGACGA osmF-yehYXW osmF-yehYXW osmFp1 2219523 reverse osmF(2218564,2219481) yehW(2215745,2216476) 2215745-2219523 2219481-2219523 TTAATTCGCTGAAAACAACAGTAAAAGAATGAGGAAAGCATCA bglX bglX bglXp 2222120 reverse bglX(2219692,2221989) bglX(2219692,2221989) rho-independent(2219660,2219682) 2219660-2222120 2221989-2222120 GCGAGTGAATATTTTGAAAATTCAGACAATAAACTGAGCATTCTTTTTCTCTCTCCATCATGCTTATGGCAAACTACGGTTTTTGCACCATTTTCGCTGCCACGTCGGGCAACAAAGGAAGAAAAATCCATA 2219660-2219692 ATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTT dusC dusC dusCp 2230395 reverse dusC(2229438,2230385) dusC(2229438,2230385) 2229438-2230395 2230385-2230395 GGGTGATGATA yohJK yohJK yohJp 2230509 forward yohJ(2230624,2231022) yohK(2231019,2231714) 2230509-2231714 2230509-2230624 TGCGCATTGCGTAATGCCGGGGAGCGAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTA cdd cdd cddp 2231819 forward cdd(2231844,2232728) cdd(2231844,2232728) 2231819-2232728 2231819-2231844 CATTACATGATTATGAGGCAACGCCA preTA preTA preTp 2233989 forward preT(2234033,2235271) preA(2235265,2236500) 2233989-2236500 2233989-2234033 ACTAAACGCTCGCCTTAATTACCTATAGCATTAAGGAAGATCACA mglBAC mglAC mglAp 2239391 reverse mglA(2237769,2239289) mglC(2236743,2237753) 2236743-2239391 2239289-2239391 GGCGTAGATAAAGACAACCTGGCTGAATTCAGCAAGAAATAAGACTGATTGGGCGCAGTCTATTACTGCGCCCTTATTGTATGGCCAACAAGGTAAAATTATA mglBAC mglBAC mglBp 2240566 reverse mglB(2239350,2240348) mglC(2236743,2237753) 2236743-2240566 2240348-2240566 GTTTTAACGTTGTAACCCGTATGTAACAGTGAATAATCACTTTTGCCGAGGTAACAGCGTCATAACAACAATTAAAGCCGTTTTCTGGAGCGTTACCGGGCATGGAAGAACGAATTTTAAAAAGTGAGCTTCGGCGTTCAGTAACACTTCATTAACTCTACTGCCCCGCCGAGCATTTATCTCAAGCACTACCCTGCATAAGAAAAACCGGAGATACCA mglBAC mglBAC mglBp2 2240566 reverse mglB(2239350,2240348) mglC(2236743,2237753) 2236743-2240566 2240348-2240566 GTTTTAACGTTGTAACCCGTATGTAACAGTGAATAATCACTTTTGCCGAGGTAACAGCGTCATAACAACAATTAAAGCCGTTTTCTGGAGCGTTACCGGGCATGGAAGAACGAATTTTAAAAAGTGAGCTTCGGCGTTCAGTAACACTTCATTAACTCTACTGCCCCGCCGAGCATTTATCTCAAGCACTACCCTGCATAAGAAAAACCGGAGATACCA galS galS galSp 2241710 reverse galS(2240628,2241668) galS(2240628,2241668) 2240628-2241710 2241668-2241710 AGCAAGCAGTCATTTACTGCAATCTCATAACAGGTAGTGAATA folE-yeiB folE-yeiB folEp 2243848 reverse folE(2242984,2243652) yeiB(2241810,2242967) 2241810-2243848 2243652-2243848 GAGTAACTTTCACTTCCGTATTTGCATAACGATGTTTTAACATCTGCTGATGAAAGGCAGCGGCAATTACAATAATTATCGCTGTGAATACTGGATTATGTGCGCCGCCTCACGCACAATAATCAGGCTGTAAATCAGCTTAATAACTTTGCCCCCACGCAGGGCGGAGGCGTCACACCTGCAGGAGAAATCATAAA cirA cirA cirAp1 2246929 reverse cirA(2244778,2246769) cirA(2244778,2246769) 2244778-2246929 2246769-2246929 AATCAAAAAAGGCTGACAAATCAGAGGCTGTTCCGGCTTTCTGGGATGATCACCTGCATAAAAAATAAGTCCACCGCGATGCTGCCGTACGCAAGGGGACGTGAAGAAGATGTGAGCGATAACCCATTTTATTTTCGTAGTTACCTCATGGAGATATGGAA cirA cirA cirAp2 2246942 reverse cirA(2244778,2246769) cirA(2244778,2246769) 2244778-2246942 2246769-2246942 ATCGTTACGCCGCAATCAAAAAAGGCTGACAAATCAGAGGCTGTTCCGGCTTTCTGGGATGATCACCTGCATAAAAAATAAGTCCACCGCGATGCTGCCGTACGCAAGGGGACGTGAAGAAGATGTGAGCGATAACCCATTTTATTTTCGTAGTTACCTCATGGAGATATGGAA lysP lysP lysPp 2248560 reverse lysP(2247063,2248532) lysP(2247063,2248532) 2247063-2248560 2248532-2248560 TCATTTTTAAGATGGATAGCATTTTTGTA nfo nfo nfop 2250806 forward nfo(2250840,2251697) nfo(2250840,2251697) 2250806-2251697 2250806-2250840 GTTTTCCTCCAGCGGGTTTAACAGGAGTCCTCGCA rihB rihB rihBp 2255252 reverse rihB(2254245,2255186) rihB(2254245,2255186) 2254245-2255252 2255186-2255252 ATCGGCCCGGTCGAATTTTCTTTGCTGTAGAAAAAATAACGCAACTGGAAACAGAGGAAATAAACAA yeiL yeiL yeiLp 2255290 forward yeiL(2255355,2256014) yeiL(2255355,2256014) 2255290-2256014 2255290-2255355 GAGAAATCTCATAGCGGATAAACATCGTGAAAGAAATCCACAATAATGATCTTAAGCAGCAATTGA fruBKA fruBKA fruBp 2263597 reverse fruB(2262365,2263495) fruA(2259719,2261410) 2259719-2263597 2263495-2263597 CTTGAAACGTTTCAGCGCGATCTTGTCTTTAACCCTAAGCCAGGTTGGCGCTTTTTTTCTCATAGAGGCTGAATCGTTTCAATTCAGCAAGAGAGGAGAACTA yeiW yeiW yeiWp 2265330 reverse yeiW(2265041,2265295) yeiW(2265041,2265295) 2265041-2265330 2265295-2265330 CATCAATCCGGTGGTTAACCTTAAGAGAACAACGTA yeiP yeiP yeiPp 2265417 forward yeiP(2265450,2266022) yeiP(2265450,2266022) 2265417-2266022 2265417-2265450 ATTTTTGACATTTTCGACTACAGGAATTTTTCGA yeiR-lpxT lpxT lpxTp 2268826 forward lpxT(2268854,2269567) lpxT(2268854,2269567) 2268826-2269567 2268826-2268854 GTTTTTCAGTAAGATAATTAGAGAAAATA mepS mepS mepSp2 2269811 forward mepS(2269979,2270545) mepS(2269979,2270545) 2269811-2270545 2269811-2269979 GTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACA mepS mepS mepSp1 2269920 forward mepS(2269979,2270545) mepS(2269979,2270545) 2269920-2270545 2269920-2269979 GCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACA yejG yejG yejGp1 2278277 reverse yejG(2277893,2278237) yejG(2277893,2278237) 2277893-2278277 2278237-2278277 TAAACAAATTGTGAAGTGAATGTGCTTCCGGGGAAAATAAG yejG yejG yejGp2 2278397 reverse yejG(2277893,2278237) yejG(2277893,2278237) 2277893-2278397 2278237-2278397 GCAAACGTGACCACGCCCGCAGATATTACTTAAATCAGAGCCATAGAGGCCACGCAGGCGAGGCATCAATCTTTACGATCTGTATAAAGACGGATTGTTGATGATGTGTTAAAATTGATGTAAACAAATTGTGAAGTGAATGTGCTTCCGGGGAAAATAAG radD radD radDp 2280622 forward radD(2280632,2282392) radD(2280632,2282392) 2280622-2282392 2280622-2280632 ACGCGAGACCA rplY rplVp 2282440 forward rplY(2282517,2282801) rplY(2282517,2282801) rho-independent(2282824,2282836) 2282440-2282836 2282440-2282517 CGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTAAGAGAGAAAGAAA 2282801-2282836 ATTGCTGAATAAGTTGTAAAAAACCCCGCTCCGGCG proL proL proLp 2286207 forward proL(2286211,2286287) proL(2286211,2286287) rho-independent(2286295,2286331) 2286207-2286331 2286207-2286211 GAGTC 2286287-2286331 AAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTTTATA yejO yejO yejOp 2289176 (2286211,2286287) (2286211,2286287) - narP narP narPp 2290422 forward narP(2290500,2291147) narP(2290500,2291147) 2290422-2291147 2290422-2290500 GTAACATTCACGCGCCTGGTAGCGTTACCAACGCTACGCTCAAACATAATGATTCTAATAAAACCTCAGGAGACTACTA napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH napFp1 2303574 reverse napF(2303003,2303497) ccmH(2291358,2292410) 2291358-2303574 2303497-2303574 ATAAAAATGGCTTATTAATTATGCGGTTTATTTGGTCGCTCTCAATTTTCAGAGCGCGTTAATGATGGAAGGTCAATG napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH napFp2 2303577 reverse napF(2303003,2303497) ccmH(2291358,2292410) 2291358-2303577 2303497-2303577 GCTATAAAAATGGCTTATTAATTATGCGGTTTATTTGGTCGCTCTCAATTTTCAGAGCGCGTTAATGATGGAAGGTCAATG napFDAGHBC-ccmABCDEFGH napFDAGHBC napFp3 2303695 reverse napF(2303003,2303497) napC(2297657,2298259) 2297657-2303695 2303497-2303695 ATTTGAAATGTGAGCAAAAGCCCGTTTTTGCCACGCTTCCCGCCACTCTTTTGATCCTGCTACAGGTTTTACCCCGATCGGGGTATGCATCTTTGACACATCCTTTAATATCTTAGCGGCTATAAAAATGGCTTATTAATTATGCGGTTTATTTGGTCGCTCTCAATTTTCAGAGCGCGTTAATGATGGAAGGTCAATG yojI yojI yojIp 2308641 reverse yojI(2306972,2308615) yojI(2306972,2308615) 2306972-2308641 2308615-2308641 TGTAATTCATTGTCCGGGTTTTCTGCA ada-alkB alkB alkBp 2309445 reverse alkB(2308691,2309341) alkB(2308691,2309341) 2308691-2309445 2309341-2309445 TGTCATCGGGTGGTCCGTGGTGATGGCACACTTTCCGGTTACCGCTGGGGCGTGTCGCGTAAAGCGCAACTGCTGCGCCGCGAAGCTGAAAATGAGGAGAGGTAA ada-alkB ada-alkB adap 2310427 reverse ada(2309341,2310405) alkB(2308691,2309341) 2308691-2310427 2310405-2310427 ATCCTTAACCAGGGAGCTGATTA ada-alkB ada-alkB adap2 2310427 reverse ada(2309341,2310405) alkB(2308691,2309341) 2308691-2310427 2310405-2310427 ATCCTTAACCAGGGAGCTGATTA ompC ompC ompCp1 2312830 reverse ompC(2311646,2312749) ompC(2311646,2312749) rho-independent(2311610,2311624) 2311610-2312830 2312749-2312830 TTGCCGACTGATTAATGAGGGTTAATCAGTATGCAGTGGCATAAAAAAGCAAATAAAGGCATATAACAGAGGGTTAATAACA 2311610-2311646 ATCTCGATTGATATCGAACAAAGGGCCTGCGGGCCCT ompC ompC ompCp2 2312864 reverse ompC(2311646,2312749) ompC(2311646,2312749) rho-independent(2311610,2311624) 2311610-2312864 2312749-2312864 GTTGGATTATTCTGCATTTTTGGGGAGAATGGACTTGCCGACTGATTAATGAGGGTTAATCAGTATGCAGTGGCATAAAAAAGCAAATAAAGGCATATAACAGAGGGTTAATAACA 2311610-2311646 ATCTCGATTGATATCGAACAAAGGGCCTGCGGGCCCT ompC ompC ompCp3 2312887 reverse ompC(2311646,2312749) ompC(2311646,2312749) rho-independent(2311610,2311624) 2311610-2312887 2312749-2312887 AAAAGTTTTAGTATCATATTCGTGTTGGATTATTCTGCATTTTTGGGGAGAATGGACTTGCCGACTGATTAATGAGGGTTAATCAGTATGCAGTGGCATAAAAAAGCAAATAAAGGCATATAACAGAGGGTTAATAACA 2311610-2311646 ATCTCGATTGATATCGAACAAAGGGCCTGCGGGCCCT micF micF micFp1 2313084 forward micF(2313084,2313176) micF(2313084,2313176) 2313084-2313176 2313084-2313084 G micF micF micFp2 2313084 forward micF(2313084,2313176) micF(2313084,2313176) 2313084-2313176 2313084-2313084 G rcsDB rcsDB rcsDp 2313452 forward rcsD(2313488,2316160) rcsB(2316177,2316827) 2313452-2316827 2313452-2313488 ATCACTTCGCGAAGTTTTAACAGGTCATAAACACGAA rcsDB rcsB rcsBp1 2315695 forward rcsB(2316177,2316827) rcsB(2316177,2316827) 2315695-2316827 2315695-2316177 AACGGATAATCCGTCTAATCTTACTGCCTCTGGCTTGCTTTTAAGCGATGATGAGTCTGGCGTACGGGAAATTGGGCCTGGTCAATTGTGCGTCAACTTCAATATGAGCAACGCTATGCAGGAAGCGGTCTTACAATTAATTGAAGTGCAACTGGCGCAGGAAGAGGTGACAGAATCGCCTCTGGGCGGAGATGAAAATGCGCAACTCCATGCCAGCGGCTATTATGCGCTCTTTGTAGACACAGTACCGGATGATGTTAAGAGGCTGTATACTGAAGCAGCAACCAGTGACTTTGCTGCGTTAGCCCAAACGGCTCATCGTCTTAAAGGCGTATTTGCCATGCTAAATCTGGTACCCGGCAAGCAGTTATGTGAAACGCTGGAACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACA rcsDB rcsB rcsBp2 2315975 forward rcsB(2316177,2316827) rcsB(2316177,2316827) 2315975-2316827 2315975-2316177 GCAACCAGTGACTTTGCTGCGTTAGCCCAAACGGCTCATCGTCTTAAAGGCGTATTTGCCATGCTAAATCTGGTACCCGGCAAGCAGTTATGTGAAACGCTGGAACATCTGATTCGTGAGAAGGATGTTCCAGGAATAGAAAAATACATCAGCGACATTGACAGTTATGTCAAGAGCTTGCTGTAGCAAGGTAGCCTATTACA atoDAEB atoDAEB atoDp 2323412 forward atoD(2323447,2324109) atoB(2326109,2327293) 2323412-2327293 2323412-2323447 TGTACCCACAACGGTGTATGCAAGAGGGATAAAAAA gyrA gyrA gyrAp 2339457 reverse gyrA(2336793,2339420) gyrA(2336793,2339420) 2336793-2339457 2339420-2339457 CTTTGAATCCGGGATACAGTAGAGGGATAGCGGTTAGA ubiG ubiG ubiGp 2339539 forward ubiG(2339567,2340289) ubiG(2339567,2340289) 2339539-2340289 2339539-2339567 TCTTGCCAATTACGGAGTAGAAGTGCCAA nrdAB-yfaE nrdAB-yfaE nrdAp 2344755 forward nrdA(2344865,2347150) yfaE(2348514,2348768) 2344755-2348768 2344755-2344865 GTGAATCCCAAACATACCCCCTATATATAGTGTTCTAAGCAGCTTCCCGTACTACAGGTAGTCTGCATGAAACTATTGCGGAAAGAATTCCAAAAACAGGTACGACATACA inaA inaA inaAp 2349499 reverse inaA(2348822,2349472) inaA(2348822,2349472) 2348822-2349499 2349472-2349499 GTTAATAAAAATGACAGGCGATAGGGTA glpTQ glpQ glpQp 2351124 reverse glpQ(2349935,2351011) glpQ(2349935,2351011) 2349935-2351124 2351011-2351124 TATGGTAATGATTGGCGGCAGCATTCTGGCGGTTATCTTGTTGATTGTTGTGATGATTGGCGAAAAACGTCGCCATGAACAATTACTGCAAGAACGCAACGGAGGCTAATGGCA glpTQ glpTQ glpTQp 2352451 reverse glpT(2351016,2352374) glpQ(2349935,2351011) 2349935-2352451 2352374-2352451 AACTCAAGAAACGGCAGGTTCTCTCACTGAATCAGGCTGTTAATCATAAATAAGACCACGGGCCACGGAGGCTATCAA glpABC glpABC glpABCp 2352583 forward glpA(2352647,2354275) glpC(2355521,2356711) rho-independent(2356723,2356752) 2352583-2356752 2352583-2352647 AAATCAAACAATTCATGTTTTTACTATGGCTAAATGGTAAAAAACGAACTTCAGAGGGATAACAA 2356711-2356752 AACTCCTTTCTGATGCCCGGTAAGCATGTGGTTACCGGGCAT yfaY yfaY yfaYp 2363655 reverse yfaY(2362431,2363633) yfaY(2362431,2363633) 2362431-2363655 2363633-2363655 ATAACAAAAGCAGGAGATAACCA elaB elaB elaBp 2381053 reverse elaB(2380722,2381027) elaB(2380722,2381027) 2380722-2381053 2381027-2381053 AGGTTTTACGCAAATGGAGAACGAGAA rbn rbn rbnp 2381582 forward rbn(2381608,2382525) rbn(2381608,2382525) 2381582-2382525 2381582-2381608 AATATTTTTTGAAACGTGATGAACTCA nuoABCEFGHIJKLMN nuoABCEFGHIJKLMN nuoAp2 2405162 reverse nuoA(2404629,2405072) nuoN(2390048,2391505) rho-independent(2390005,2390023) 2390005-2405162 2405072-2405162 AAGGTTTTTTTTATTCCTCCCCATGAATCGATGTGGCGTCCATCTGCCGTGAAGAGCAGTGAATCTGGCGCTACTTTTGATGAGTAAGCAA 2390005-2390048 ATCTGTTACTTTGTAAGTCAGAAAGCCGCCGACATGCTCGGCGG nuoABCEFGHIJKLMN nuoABCEFGHIJKLMN nuoAp1 2405335 reverse nuoA(2404629,2405072) nuoN(2390048,2391505) rho-independent(2390005,2390023) 2390005-2405335 2405072-2405335 TCTAATTATCCTGGAGTCGTCAAGGATCTGGGGTGAAAGGGCATTAAATGCTAATGGTGTTGATATTATGTAAACTAATGTGAAGAAACTTTTGTTAAAGTTGACAAAAGGTTATAGAAAGGAGTAAAAAACCACATCAATTAGCTGTATAAAAGAATTTCTACAGTGATTGTAAGGTTTTTTTTATTCCTCCCCATGAATCGATGTGGCGTCCATCTGCCGTGAAGAGCAGTGAATCTGGCGCTACTTTTGATGAGTAAGCAA 2390005-2390048 ATCTGTTACTTTGTAAGTCAGAAAGCCGCCGACATGCTCGGCGG lrhA lrhA lrhAp 2406656 reverse lrhA(2405703,2406641) lrhA(2405703,2406641) 2405703-2406656 2406641-2406656 AGTAAGTGATAATATA alaA-yfbR alaA alaAp9 2407408 forward alaA(2407561,2408778) alaA(2407561,2408778) 2407408-2408778 2407408-2407561 GTCATTATTAAGTTATTAACAGCACAATCGAGCCTTCCCCTCTGGCAAAATCTTATTCTGCAGACCTTCAAAACACCGTCCTGGGGGAGTACATTGTTCTAAGCTGACTTCCACGGCAGGGAGTGGCGATAACAGCAAAAAAGGTCAAGATTCA alaA-yfbR yfbR yfbRp3 2408831 forward yfbR(2408862,2409461) yfbR(2408862,2409461) 2408831-2409461 2408831-2408862 ACCTGATGATGTCATCATACGTAAGGTCACTA yfbU-hxpA yfbU-hxpA yfbUp 2412594 reverse yfbU(2412100,2412594) hxpA(2411439,2412089) 2411439-2412594 2412594-2412594 A ackA-pta ackA ackAp 2413459 forward ackA(2413470,2414672) ackA(2413470,2414672) 2413459-2414672 2413459-2413470 TAGGTACTTCCA ackA-pta pta ptap 2414486 forward pta(2414747,2416891) pta(2414747,2416891) 2414486-2416891 2414486-2414747 AATGGTTCGTGAACTGTCTCTGGGCAAACTGGGCGTGCTGGGCTTTGAAGTTGATCATGAACGCAACCTGGCTGCACGTTTCGGCAAATCTGGTTTCATCAACAAAGAAGGTACCCGTCCTGCGGTGGTTATCCCAACCAACGAAGAACTGGTTATCGCGCAAGACGCGAGCCGCCTGACTGCCTGATTTCACACCGCCAGCTCAGCTGGCGGTGCTGTTTTGTAACCCGCCAAATCGGCGGTAACGAAAGAGGATAAACCG argT-hisJQMP hisJQMP hisJp 2426837 reverse hisJ(2426006,2426788) hisP(2423736,2424509) 2423736-2426837 2426788-2426837 AACAAACCTGTAAATATTCCCTATAAAAAGACTGTCAGTTGAGGACATTA argT-hisJQMP argT-hisJQMP argTp 2427849 reverse argT(2427009,2427791) hisP(2423736,2424509) 2423736-2427849 2427791-2427849 TGCAAACACACAACACAATACACAACATAAAAAAGCCATTTTCACTTGAGGGTTATGTA cvpA-purF-ubiX cvpA-purF-ubiX cvpAp2 2430770 reverse cvpA(2430275,2430763) ubiX(2428057,2428626) rho-independent(2428030,2428048) 2428030-2430770 2430763-2430770 GACACATA 2428030-2428057 ACTCCGCTGTTGCCCTGTTTCAGGGCAA cvpA-purF-ubiX cvpA-purF-ubiX cvpAp1 2430800 reverse cvpA(2430275,2430763) ubiX(2428057,2428626) rho-independent(2428030,2428048) 2428030-2430800 2430763-2430800 CGAACAGGATGACAGGGCGTAAAATCGTGGGACACATA 2428030-2428057 ACTCCGCTGTTGCCCTGTTTCAGGGCAA accD accD accDp 2434015 reverse accD(2433012,2433926) accD(2433012,2433926) rho-independent(2432963,2433017) 2432963-2434015 2433926-2434015 CATTCATGGTCTGTTGGGGGCAAAAATGGCATTATGCGTCCCCAAAGATAAAACTGGCATCGAACCAGGTTCAGACAGAAAGGTCCCTAA 2432963-2433012 ATAACTGATAAGGGCAGGGCCACTGGCTCTGCCCTTTTGCTATTCTCACC pdxB-usg-truA-dedA usg-truA-dedA usgp 2436890 reverse usg(2435636,2436649) dedA(2434082,2434741) 2434082-2436890 2436649-2436890 GCGATGACGCACCGCTGCGTAAAGTCGCCGGGATACCGGGTGAGTTCGATAAACTGCGCAAAAACTATCTTGAGCGCCGTGAATGGTCATCTCTGTATGTAATTTGTGATGACGCCAGTGCGGCATCATTGCTGTGTAAACTGGGTTTTAACGCCGTTCATCATCCGGCACGTTAATCTCTTCTTCATGCTCTCTGCTGTAACATTGGCAGGGAGCTTTGCTATTTCTGGAGTAAACCACCA pdxB-usg-truA-dedA pdxB-usg-truA-dedA pdxBp 2437884 reverse pdxB(2436715,2437851) dedA(2434082,2434741) 2434082-2437884 2437851-2437884 GGTTAACTCTCGTCTCATACAGGTAACACAAACG flk flk flKp 2437912 forward flk(2437950,2438945) flk(2437950,2438945) 2437912-2438945 2437912-2437950 AGGCATACTTGCGAAGATTTCAGGTATAAGGATACGTAA fabB fabB fabBp 2441641 reverse fabB(2440385,2441605) fabB(2440385,2441605) rho-independent(2440283,2440310) 2440283-2441641 2441605-2441641 GAAACTTACTCTATGTGCGACTTACAGAGGTATTGAA 2440283-2440385 ATTCGCAGTAGGTCGGAGTAGACGCGCCAGCGTCGCATCCGACGTTACGCGCCAATGCGGCCTCCGGCACTAACGCAAAAGGGAACCTGATGGTTCCCTTTTT sixA sixA sixAp 2456999 reverse sixA(2456327,2456812) sixA(2456327,2456812) 2456327-2456999 2456812-2456999 ATGAATCCGCGCTGAATGGCGGAGTGTTGGTCAAAATGTAAACGCATATTGACTATACTTACGCCATTGAGGTAAAAAACAGCGTTTCATTCGGTGAATGGATAAGGCACAATGCCGGCCACCGTTTTCTTTCTCTGGTTTCAGATGAAAGAAAACGGGCGAATCTGGTTAACAAAAGCGGTGCAATA sixA sixA sixAp2 2456999 reverse sixA(2456327,2456812) sixA(2456327,2456812) 2456327-2456999 2456812-2456999 ATGAATCCGCGCTGAATGGCGGAGTGTTGGTCAAAATGTAAACGCATATTGACTATACTTACGCCATTGAGGTAAAAAACAGCGTTTCATTCGGTGAATGGATAAGGCACAATGCCGGCCACCGTTTTCTTTCTCTGGTTTCAGATGAAAGAAAACGGGCGAATCTGGTTAACAAAAGCGGTGCAATA fadIJ fadIJ fadIp 2460511 reverse fadI(2459159,2460469) fadJ(2457015,2459159) 2457015-2460511 2460469-2460511 TCAGGTCAGACCACTTTATTTATTTTTTTACAGGGGAGTGTTA yfcZ yfcZ yfcZp 2460979 reverse yfcZ(2460650,2460934) yfcZ(2460650,2460934) 2460650-2460979 2460934-2460979 AACGTTTATCTGGCACCTTGGGTGCACATACAGAGGAAATCAACGA fadL fadL fadLp 2461205 forward fadL(2461306,2462646) fadL(2461306,2462646) 2461205-2462646 2461205-2461306 ACTGGTCTGATTTCTAAGATGTACCTCAGACCCTACACTTCGCGCTCCTGTTACAGCACGTAACATAGTTTGTATAAAAATAAATCATTGAGGTTATGGTCA mlaA mlaA mlaAp 2465135 reverse mlaA(2464252,2465007) mlaA(2464252,2465007) 2464252-2465135 2465007-2465135 AGCAAATCAGGGCGTCTGGACATCAGTTGACGTGCTGTTACAATCGCCCACACCTAAACAGGCGGATACGGTATCGTTCCGTCATGGATGGCAAACTGCATAAGCCATAAAAAAACAGGGAGACATTTA argW argW argWp 2466308 forward argW(2466309,2466383) argW(2466309,2466383) 2466308-2466383 2466308-2466309 TG intS intS intSp 2466515 forward intS(2466545,2467702) intS(2466545,2467702) 2466515-2467702 2466515-2466545 AAAATAATTTTACCCACCGGATTTTTACCCA dsdC dsdC dsdCp 2477746 reverse dsdC(2476694,2477629) dsdC(2476694,2477629) 2476694-2477746 2477629-2477746 AATGGAGTGATTTACATCTAAAAATGAAGGTGAATTGAGATATGGTTCACTTTAGCTCATCTCATAGCTGAAATTTTGCCGCTATTTTTTTACACTTAAGCGAAAAATGAGGTGATTA dsdXA dsdXA dsdXp 2477821 forward dsdX(2477847,2479184) dsdA(2479202,2480530) 2477821-2480530 2477821-2477847 AGGTTAATCACAGGGGAAGGTGAGATA dsdXA dsdA dsdAp 2479121 forward dsdA(2479202,2480530) dsdA(2479202,2480530) 2479121-2480530 2479121-2479202 AGCGACATTTATCGCTTCAGTCGTCGCTCTGGCGGGCACATTCCTGCTGTCATTTATCATCTAAGCGCAAAGAGACGTACTA emrKY emrKY emrKp 2483448 reverse emrK(2482176,2483339) emrY(2480638,2482176) 2480638-2483448 2483339-2483448 TCCAACGTTCCTGGGATAATGTGCAACACATGCACTGTGTTTGATATGAAGAATGAATGCTCTTTTCATTCAATTCATAAATTTCATCTATGAGAAATGAGAGATAATAG evgAS evgAS evgAp2 2483631 forward evgA(2483755,2484369) evgS(2484374,2487967) 2483631-2487967 2483631-2483755 TACTTGTCGAATTATCTTAAAGGAAGCTCAGATTTTCTTATTTTTATTGAGAAAATGAGATGACGCCTTATGTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTA evgAS evgAS evgAp1 2483641 forward evgA(2483755,2484369) evgS(2484374,2487967) 2483641-2487967 2483641-2483755 ATTATCTTAAAGGAAGCTCAGATTTTCTTATTTTTATTGAGAAAATGAGATGACGCCTTATGTCTGTATTACTACAGGGAGAAGGGAGATGCTTCATTGCAAAGGGAATAATCTA yfdX-frc-oxc-yfdVE frc frcp 2493439 reverse frc(2492004,2493254) frc(2492004,2493254) 2492004-2493439 2493254-2493439 GTCCTCACTACTTACCATGCAGAAAGGAATTGGAAGTGGCGATGAAATGATTTTCAGCACTTGATACAGGATTTTAAAAATATCGAGTGCAGCTACGACGATATTTTGCGGGTTATTTATAGAAGATATTACGCCTTAAATAAACGCTAAATTAACACATATTTAATTAACTAATAGGTATTGCTA yfdX-frc-oxc-yfdVE yfdX yfdXp 2494433 reverse yfdX(2493767,2494402) yfdE(2488023,2489168) 2488023-2494433 2494402-2494433 TTTTCTAAAACTGTTAAAGAATGAGGTAAGTA lpxP lpxP lpxPp 2495578 forward lpxP(2495645,2496565) lpxP(2495645,2496565) 2495578-2496565 2495578-2495645 ATTGAGTGTACCGCTGTCGACATGGAATCTTCTGCGATACAACAATTCGTATCTACAGAAGGTAACTA alaC alaC alaCp 2498399 reverse alaC(2497057,2498295) alaC(2497057,2498295) 2497057-2498399 2498295-2498399 AAAACGCTGGACAGACAGAAATTAATCAGGCTATTTTCAAAACAGCCACCATCGTGGCAGCGTCGCTCGGACGGTCCGGGCGCTAACGTTAATCTGAGGAAATTA glk glk glkp1 2509447 reverse glk(2508461,2509426) glk(2508461,2509426) rho-independent(2508424,2508447) 2508424-2509447 2509426-2509447 CTTTAGCGGAGCAGTTGAAGAA 2508424-2508461 AATCCTTCCTTTTATATCGGGAGGTAACTCTCCCGATA glk glk glkp3 2509447 reverse glk(2508461,2509426) glk(2508461,2509426) rho-independent(2508424,2508447) 2508424-2509447 2509426-2509447 CTTTAGCGGAGCAGTTGAAGAA 2508424-2508461 AATCCTTCCTTTTATATCGGGAGGTAACTCTCCCGATA glk glk glkp4 2509461 reverse glk(2508461,2509426) glk(2508461,2509426) rho-independent(2508424,2508447) 2508424-2509461 2509426-2509461 AAGAATTATTTTGACTTTAGCGGAGCAGTTGAAGAA 2508424-2508461 AATCCTTCCTTTTATATCGGGAGGTAACTCTCCCGATA glk glk glkp2 2509461 reverse glk(2508461,2509426) glk(2508461,2509426) rho-independent(2508424,2508447) 2508424-2509461 2509426-2509461 AAGAATTATTTTGACTTTAGCGGAGCAGTTGAAGAA 2508424-2508461 AATCCTTCCTTTTATATCGGGAGGTAACTCTCCCGATA mntH mntH mntHp 2512734 reverse mntH(2511468,2512706) mntH(2511468,2512706) 2511468-2512734 2512706-2512734 AGCAAAGGCTATGTTTTAGAGGCACAAGA nupC nupC nupCp 2513009 forward nupC(2513042,2514244) nupC(2513042,2514244) 2513009-2514244 2513009-2513042 GGAAATTTAACCTGCCTCATATTTGGAGCAAATA alaWX alaWX alaWp 2518253 reverse alaW(2518156,2518231) alaX(2518041,2518116) rho-independent(2518002,2518041) 2518002-2518253 2518231-2518253 AACTCGACAAGCTTTACGTGACG 2518002-2518041 AAATTTCCAACCCTCGCTGCAAAGCGGGGGTTTTTTGTCT yfeCD yfeCD yfeCp 2518407 forward yfeC(2518467,2518811) yfeD(2518813,2519205) 2518407-2519205 2518407-2518467 ATAAAATGAACTACTAATAGACCCACATACATTCAGGGAATTGTTATGTTCAAGGAGAGGA gltX gltX gltXp3 2520730 reverse gltX(2519257,2520672) gltX(2519257,2520672) rho-independent(2519208,2519242) 2519208-2520730 2520672-2520730 ACTTAATTTTTCCAGGATTTGCCGGTTGTCGGCATCTTTCTAAACGTAAGGCCATTTCA 2519208-2519257 ATTAGCGTGTAAAAAGATAAACGGCAGGAGATAATATCCTGCCGTTTTTT gltX gltX gltXp2 2520776 reverse gltX(2519257,2520672) gltX(2519257,2520672) rho-independent(2519208,2519242) 2519208-2520776 2520672-2520776 CCCGAACTACATTGAGGAATCAGGCGGGAGTGATAGAATATCGCCCACTTAATTTTTCCAGGATTTGCCGGTTGTCGGCATCTTTCTAAACGTAAGGCCATTTCA 2519208-2519257 ATTAGCGTGTAAAAAGATAAACGGCAGGAGATAATATCCTGCCGTTTTTT gltX gltX gltXp1 2520784 reverse gltX(2519257,2520672) gltX(2519257,2520672) rho-independent(2519208,2519242) 2519208-2520784 2520672-2520784 GGTAGAAACCCGAACTACATTGAGGAATCAGGCGGGAGTGATAGAATATCGCCCACTTAATTTTTCCAGGATTTGCCGGTTGTCGGCATCTTTCTAAACGTAAGGCCATTTCA 2519208-2519257 ATTAGCGTGTAAAAAGATAAACGGCAGGAGATAATATCCTGCCGTTTTTT valUXY-lysV valUXY-lysV valUp 2520924 forward valU(2520931,2521006) lysV(2521253,2521328) rho-independent(2521485,2521519) 2520924-2521519 2520924-2520931 ACAGCGGG 2521328-2521519 AATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTA xapR xapR xapRp1 2522505 reverse xapR(2521593,2522477) xapR(2521593,2522477) rho-independent(2521489,2521515) 2521489-2522505 2522477-2522505 ATGTATTTATTATATGGAGCACTTAATTA 2521489-2521593 GGTGAGGAGACAGGAATTGCCGGAAATAGTAGTCTGCTAAGTGAAGCGCATCAGGCAATTTCGCAAATCGCAGATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTT xapR xapR xapRp1 2522505 reverse xapR(2521593,2522477) xapR(2521593,2522477) rho-independent(2521334,2521358) 2521334-2522505 2522477-2522505 ATGTATTTATTATATGGAGCACTTAATTA 2521334-2521593 GGTGAGGAGACAGGAATTGCCGGAAATAGTAGTCTGCTAAGTGAAGCGCATCAGGCAATTTCGCAAATCGCAGATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATGACTCGCTTCGCTCGCCCTTCGGGCCGTCGCCGCGAGCGGCTCCGTTGTTTCGCTGCGCTCAACTCAAACCTGCTGCAGGTTCGAATCTTTGAGTATCGCAGATAGTAAAAAAGCGCCTTTAGGGCGCTTTTT xapR xapR xapRp2 2522563 reverse xapR(2521593,2522477) xapR(2521593,2522477) rho-independent(2521489,2521515) 2521489-2522563 2522477-2522563 GTTTATGTATGTCGGATATCTGGTGGTGAAATACTTTATGCCATGATAATTTAATACGATGTATTTATTATATGGAGCACTTAATTA 2521489-2521593 GGTGAGGAGACAGGAATTGCCGGAAATAGTAGTCTGCTAAGTGAAGCGCATCAGGCAATTTCGCAAATCGCAGATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTT xapR xapR xapRp2 2522563 reverse xapR(2521593,2522477) xapR(2521593,2522477) rho-independent(2521334,2521358) 2521334-2522563 2522477-2522563 GTTTATGTATGTCGGATATCTGGTGGTGAAATACTTTATGCCATGATAATTTAATACGATGTATTTATTATATGGAGCACTTAATTA 2521334-2521593 GGTGAGGAGACAGGAATTGCCGGAAATAGTAGTCTGCTAAGTGAAGCGCATCAGGCAATTTCGCAAATCGCAGATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATGACTCGCTTCGCTCGCCCTTCGGGCCGTCGCCGCGAGCGGCTCCGTTGTTTCGCTGCGCTCAACTCAAACCTGCTGCAGGTTCGAATCTTTGAGTATCGCAGATAGTAAAAAAGCGCCTTTAGGGCGCTTTTT xapAB xapB xapBp1 2524251 reverse xapB(2522729,2523985) xapB(2522729,2523985) 2522729-2524251 2523985-2524251 GGGGATGTTGTTGGTATGTCTGTGGTGCCTGAGGTTATTTCAGCTCGCCATTGCGACCTTAAAGTCGTTGCGGTCTCTGCGATTACCAATATGGCGGAAGGTTTAAGCGATGTGAAATTGTCACATGCGCAAACGCTGGCGGCTGCGGAGCTCTCTAAGCAGAACTTCATCAACCTTATTTGTGGCTTTCTGCGCAAAATTGCCTGAGAAAAACAATAAGAAACGGCCTCGCGGGTGAGGCCAAATGATGCGACAAGGAAACGATTA xapAB xapB xapBp2 2524303 reverse xapB(2522729,2523985) xapB(2522729,2523985) rho-independent(2522698,2522720) 2522698-2524303 2523985-2524303 GGGGCCGAATTTCGAGACTGCGGCGGAAATTCGCATGATGCAAATTATTGGTGGGGATGTTGTTGGTATGTCTGTGGTGCCTGAGGTTATTTCAGCTCGCCATTGCGACCTTAAAGTCGTTGCGGTCTCTGCGATTACCAATATGGCGGAAGGTTTAAGCGATGTGAAATTGTCACATGCGCAAACGCTGGCGGCTGCGGAGCTCTCTAAGCAGAACTTCATCAACCTTATTTGTGGCTTTCTGCGCAAAATTGCCTGAGAAAAACAATAAGAAACGGCCTCGCGGGTGAGGCCAAATGATGCGACAAGGAAACGATTA 2522698-2522729 AAAGGATTCGCGGCTCTGCTCTTCAGAGCTGC xapAB xapB xapBp3 2524375 reverse xapB(2522729,2523985) xapB(2522729,2523985) rho-independent(2522698,2522720) 2522698-2524375 2523985-2524375 CCGCGCACTGTTACAAAAAGTGGCGAAAGAAGAGGGTTTCCCTCTGACGGAGGGCGTGTTCGTCTCGTATCCGGGGCCGAATTTCGAGACTGCGGCGGAAATTCGCATGATGCAAATTATTGGTGGGGATGTTGTTGGTATGTCTGTGGTGCCTGAGGTTATTTCAGCTCGCCATTGCGACCTTAAAGTCGTTGCGGTCTCTGCGATTACCAATATGGCGGAAGGTTTAAGCGATGTGAAATTGTCACATGCGCAAACGCTGGCGGCTGCGGAGCTCTCTAAGCAGAACTTCATCAACCTTATTTGTGGCTTTCTGCGCAAAATTGCCTGAGAAAAACAATAAGAAACGGCCTCGCGGGTGAGGCCAAATGATGCGACAAGGAAACGATTA 2522698-2522729 AAAGGATTCGCGGCTCTGCTCTTCAGAGCTGC xapAB xapAB xapAp 2524910 reverse xapA(2524045,2524878) xapB(2522729,2523985) rho-independent(2522698,2522720) 2522698-2524910 2524878-2524910 GTTAGATTCCACCCTACAGAAAAAGGATATGTA 2522698-2522729 AAAGGATTCGCGGCTCTGCTCTTCAGAGCTGC xapAB xapAB xapAp2 2524910 reverse xapA(2524045,2524878) xapB(2522729,2523985) rho-independent(2522698,2522720) 2522698-2524910 2524878-2524910 GTTAGATTCCACCCTACAGAAAAAGGATATGTA 2522698-2522729 AAAGGATTCGCGGCTCTGCTCTTCAGAGCTGC ligA-ypeB ligA-ypeB ligAp 2530201 reverse ligA(2528161,2530176) ypeB(2527941,2528159) 2527941-2530201 2530176-2530201 GGGTTTTTAGCATTGATGGTGCGATA cysK cysK cysKp2 2532344 forward cysK(2532409,2533380) cysK(2532409,2533380) rho-independent(2533409,2533424) 2532344-2533424 2532344-2532409 CCGCATATTCTCTGAGCGGGTATGCTACCTGTTGTATCCCAATTTCATACAGTTAAGGACAGGCCA 2533380-2533424 ATGCCAGCTTGTTAAAAATGCGTAAAAAAGCACCTTTTTAGGTGC cysK cysK cysKp1 2532377 forward cysK(2532409,2533380) cysK(2532409,2533380) rho-independent(2533409,2533424) 2532377-2533424 2532377-2532409 GTATCCCAATTTCATACAGTTAAGGACAGGCCA 2533380-2533424 ATGCCAGCTTGTTAAAAATGCGTAAAAAAGCACCTTTTTAGGTGC ptsHI-crr ptsHI-crr ptsHp5 2533498 forward ptsH(2533764,2534021) crr(2535834,2536343) rho-independent(2536363,2536380) 2533498-2536380 2533498-2533764 ACTAATTATTTTGATGCGCGAAATTAATCGTTACAGGAAAAGCCAAAGCTGAATCGATTTTATGATTTGGTTCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr ptsHI-crr ptsHp4 2533501 forward ptsH(2533764,2534021) crr(2535834,2536343) rho-independent(2536363,2536380) 2533501-2536380 2533501-2533764 AATTATTTTGATGCGCGAAATTAATCGTTACAGGAAAAGCCAAAGCTGAATCGATTTTATGATTTGGTTCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr ptsHI-crr ptsHp 2533501 forward ptsH(2533764,2534021) crr(2535834,2536343) rho-independent(2536363,2536380) 2533501-2536380 2533501-2533764 AATTATTTTGATGCGCGAAATTAATCGTTACAGGAAAAGCCAAAGCTGAATCGATTTTATGATTTGGTTCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr ptsHI-crr ptsHp3 2533507 forward ptsH(2533764,2534021) crr(2535834,2536343) rho-independent(2536363,2536380) 2533507-2536380 2533507-2533764 TTTGATGCGCGAAATTAATCGTTACAGGAAAAGCCAAAGCTGAATCGATTTTATGATTTGGTTCAATTCTTCCTTTAGCGGCATAATGTTTAATGACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr ptsHI-crr ptsHp2 2533601 forward ptsH(2533764,2534021) crr(2535834,2536343) rho-independent(2536363,2536380) 2533601-2536380 2533601-2533764 GACGTACGAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr ptsHI-crr ptsHp1 2533608 forward ptsH(2533764,2534021) crr(2535834,2536343) rho-independent(2536363,2536380) 2533608-2536380 2533608-2533764 GAAACGTCAGCGGTCAACACCCGCCAGCAATGGACTGTATTGCGCTCTTCGTGCGTCGCGTCTGTTAAAAACTGGCGCTAACAATACAGGCTAAAGTCGAACCGCCAGGCTAGACTTTAGTTCCACAACACTAAACCTATAAGTTGGGGAAATACAA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr crr crrp2 2535480 forward crr(2535834,2536343) crr(2535834,2536343) rho-independent(2536363,2536380) 2535480-2536380 2535480-2535834 ACCTTTACCAGCCAATGTCACCGTCCGTGCTGAACTTGATCAAGCAAGTTATTGATGCTTCTCATGCTGAAGGCAAATGGACTGGCATGTGTGGTGAGCTTGCTGGCGATGAACGTGCTACACTTCTGTTGCTGGGGATGGGTCTGGACGAATTCTCTATGAGCGCCATTTCTATCCCGCGCATTAAGAAGATTATCCGTAACACGAACTTCGAAGATGCGAAGGTGTTAGCAGAGCAGGCTCTTGCTCAACCGACAACGGACGAGTTAATGACGCTGGTTAACAAGTTCATTGAAGAAAAAACAATCTGCTAATCCACGAGATGCGGCCCAATTTACTGCTTAGGAGAAGATCA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA ptsHI-crr crr crrpI 2535610 forward crr(2535834,2536343) crr(2535834,2536343) rho-independent(2536363,2536380) 2535610-2536380 2535610-2535834 GCTGGGGATGGGTCTGGACGAATTCTCTATGAGCGCCATTTCTATCCCGCGCATTAAGAAGATTATCCGTAACACGAACTTCGAAGATGCGAAGGTGTTAGCAGAGCAGGCTCTTGCTCAACCGACAACGGACGAGTTAATGACGCTGGTTAACAAGTTCATTGAAGAAAAAACAATCTGCTAATCCACGAGATGCGGCCCAATTTACTGCTTAGGAGAAGATCA 2536343-2536380 ATTCTTGCCGCAGTGAAAAATGGCGCCCATCGGCGCCA yfeKS yfeKS yfeKp 2537315 forward yfeK(2537342,2537716) yfeS(2537749,2538483) 2537315-2538483 2537315-2537342 ATCACAAAACAAGGATAAGGTAATTCAA pdxK pdxK pdxKp 2537319 reverse pdxK(2536386,2537237) pdxK(2536386,2537237) 2536386-2537319 2537237-2537319 GTGATAGCCGATTTGACTGCCAGAATCAGGTAAAGTTTCGGTTGGATTACGATGAGGATCATCGGCAAGGAGAAAAAATTAAA cysPUWAM cysPUWAM cysPp 2543557 reverse cysP(2542512,2543528) cysM(2538672,2539583) 2538672-2543557 2543528-2543557 GAAAGTCATTAAATTTATAAGGGTGCGCAA ucpA ucpA ucpAp1 2544664 reverse ucpA(2543832,2544623) ucpA(2543832,2544623) 2543832-2544664 2544623-2544664 AATGGAGTGTAACGCTCTGTATTAACAAGGAGAGCATTAAAA ucpA ucpA ucpAp2 2544671 reverse ucpA(2543832,2544623) ucpA(2543832,2544623) 2543832-2544671 2544623-2544671 CAGAGGGAATGGAGTGTAACGCTCTGTATTAACAAGGAGAGCATTAAAA murQP-yfeW murQP murQp1 2545733 forward murQ(2545773,2546669) murP(2546673,2548097) 2545733-2548097 2545733-2545773 ATCTGCAATTATTTGATCGTAAATAGTAAGGTCACCACCGA murQP-yfeW murQP murQp 2545733 forward murQ(2545773,2546669) murP(2546673,2548097) 2545733-2548097 2545733-2545773 ATCTGCAATTATTTGATCGTAAATAGTAAGGTCACCACCGA murQP-yfeW murQP murQp2 2545741 forward murQ(2545773,2546669) murP(2546673,2548097) 2545741-2548097 2545741-2545773 TTATTTGATCGTAAATAGTAAGGTCACCACCGA murR murR murRp 2545793 reverse murR(2544752,2545609) murR(2544752,2545609) 2544752-2545793 2545609-2545793 AATCATCTTTTCAAATTGCATCGGTGGTGACCTTACTATTTACGATCAAATAATTGCAGATGTATGGAATCATATATCCCGAATTGACAGGCTTAAAGGAATCATTGAGTCTACACTCGCAGAGTGTGAAGAGCGTCATAAGAACTTAAGCGGAATTTATGCTGCCAGCCCAGGAGAGTGGAAGA murR murR murRp2 2545793 reverse murR(2544752,2545609) murR(2544752,2545609) 2544752-2545793 2545609-2545793 AATCATCTTTTCAAATTGCATCGGTGGTGACCTTACTATTTACGATCAAATAATTGCAGATGTATGGAATCATATATCCCGAATTGACAGGCTTAAAGGAATCATTGAGTCTACACTCGCAGAGTGTGAAGAGCGTCATAAGAACTTAAGCGGAATTTATGCTGCCAGCCCAGGAGAGTGGAAGA yfeYX yfeYX yfeYp 2551243 reverse yfeY(2550641,2551216) yfeX(2549646,2550545) 2549646-2551243 2551216-2551243 CGTTATTGAATAACCAAAGGAAGTGACA amiA-hemF amiA-hemF amiAp 2552241 forward amiA(2552352,2553221) hemF(2553225,2554124) 2552241-2554124 2552241-2552352 AGTTGTCAACTATTGAAATGAAAAGTAAAACAATTCTCAACAGCAAACCGTCGTAACGGATTACGCGATACGATATAACATCTGGAACTTTATTATTACAACTCAGGCCGTA amiA-hemF hemF hemFp3 2552952 forward hemF(2553225,2554124) hemF(2553225,2554124) 2552952-2554124 2552952-2553225 AGTCTGACGCTCGGCTCGCATATTCTGAAGAAGATTAAGCCGGTGCATAAACTGCACAGCCGCAACACCGAACAAGCGGCATTTGTGGTGTTGAAATCACCGTCGGTTCCTTCGGTGCTGGTGGAAACCTCGTTTATCACCAACCCGGAAGAAGAACGGCTGTTAGGCACGGCGGCGTTTCGTCAGAAAATCGCCACAGCGATTGCTGAAGGCGTGATCAGTTATTTCCACTGGTTCGACAACCAGAAAGCACATTCGAAAAAGCGATAAGTTA amiA-hemF hemF hemFp2 2552982 forward hemF(2553225,2554124) hemF(2553225,2554124) 2552982-2554124 2552982-2553225 AAGATTAAGCCGGTGCATAAACTGCACAGCCGCAACACCGAACAAGCGGCATTTGTGGTGTTGAAATCACCGTCGGTTCCTTCGGTGCTGGTGGAAACCTCGTTTATCACCAACCCGGAAGAAGAACGGCTGTTAGGCACGGCGGCGTTTCGTCAGAAAATCGCCACAGCGATTGCTGAAGGCGTGATCAGTTATTTCCACTGGTTCGACAACCAGAAAGCACATTCGAAAAAGCGATAAGTTA amiA-hemF hemF hemFp1 2553205 forward hemF(2553225,2554124) hemF(2553225,2554124) 2553205-2554124 2553205-2553225 ATTCGAAAAAGCGATAAGTTA yffOP yffO-yffP yffOp 2562053 forward yffO(2562111,2562527) yffP(2562524,2563117) 2562053-2563117 2562053-2562111 CAATTCTTGCGAAAAATGGCAAAAATAACGGTATTTTTCATCATTTATTGGGGGTTTTA talA-tktB talA-tktB talAp2 2578570 forward talA(2578666,2579616) tktB(2579636,2581639) 2578570-2581639 2578570-2578666 CTGTCTGCTATGCTTTTTTGATGCGTTTAGCGAAATTTCTCAGAAGTGTGAATTAACGCACTCATCTAACACTTTACTTTTCAAGGAGTATTTCCTA talA-tktB talA-tktB talAp1 2578588 forward talA(2578666,2579616) tktB(2579636,2581639) 2578588-2581639 2578588-2578666 TGATGCGTTTAGCGAAATTTCTCAGAAGTGTGAATTAACGCACTCATCTAACACTTTACTTTTCAAGGAGTATTTCCTA talA-tktB talA talAp 2578608 forward talA(2578666,2579616) talA(2578666,2579616) 2578608-2579616 2578608-2578666 CTCAGAAGTGTGAATTAACGCACTCATCTAACACTTTACTTTTCAAGGAGTATTTCCTA talA-tktB tktB tktBp 2579308 forward tktB(2579636,2581639) tktB(2579636,2581639) 2579308-2581639 2579308-2579636 CACCACTATGAAACCATTGTGATGGGCGCGAGCTTCCGTCGCACCGAACAAATCCTCGCCTTAACCGGCTGCGATCGACTGACTATCGCACCGAATTTACTGAAGGAGCTGCAGGAAAAAGTTTCGCCAGTGGTACGTAAATTAATCCCACCTTCTCAGACGTTCCCACGCCCAGCTCCCATGAGCGAAGCGGAGTTCCGTTGGGAGCACAATCAGGATGCGATGGCGGTAGAAAAACTGTCTGAAGGCATTCGTCTGTTCGCCGTTGATCAACGCAAACTGGAAGATCTTCTTGCCGCCAAACTATAAACCAGCCACGGAGTGTTATA narQ narQ narQp 2585577 forward narQ(2585731,2587431) narQ(2585731,2587431) 2585577-2587431 2585577-2585731 TATTACCCGACTTACAGGGGAATCGGCAATGTTCATGTGCCCAGAATAAGTAACTATTTCGCTATAAACTGTGGCAGATCAAATAATCCCATCACTGACTAAATTGCGTTTCAGCGAACTGGAACATTAATGATTTTTTGTGGAGAAGACGCGTG acrD acrD acrDp 2587475 forward acrD(2587595,2590708) acrD(2587595,2590708) 2587475-2590708 2587475-2587595 TAAAAGGGCATGATAATTTACATTAACTCCTTTTTTTCTCCACGATTGGCTCGTACCTTGCCGCTACAGTGAAGCAAGTCAAGCCTACAACGATACGCAGAAACACGAGGTCCTCTTTTAA acrD acrD acrDp2 2587550 forward acrD(2587595,2590708) acrD(2587595,2590708) 2587550-2590708 2587550-2587595 AAGTCAAGCCTACAACGATACGCAGAAACACGAGGTCCTCTTTTAA ypfM ypfM ypfMp 2590970 reverse ypfM(2590807,2590866) ypfM(2590807,2590866) 2590807-2590970 2590866-2590970 ATAAGATTTGTCCCCCGGAGGTAGTCATCGCAGCAATCGAGTAAATTAGCTTCACCACGGTATATTGTTTCCGTAGAATACCCATAATTATAAGAGAGGTTGTTA yffB-dapE-ypfN dapE-ypfN dapEp 2591560 forward dapE(2591607,2592734) ypfN(2592762,2592962) 2591560-2592962 2591560-2591607 GTTTCAGTGATTCCAGTTATCAGCAATTTTTCCATGAGGTGTAGTCTA purC purC purCp 2597781 reverse purC(2596905,2597618) purC(2596905,2597618) 2596905-2597781 2597618-2597781 ACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGACAAAACATCCGGCACACCAGACAGCAAAAGATTTTAAAACGTTAATTCACACCCAGGAGTGATAAAGA dapA-bamC bamC bamCp 2599014 reverse bamC(2597831,2598865) bamC(2597831,2598865) rho-independent(2597803,2597824) 2597803-2599014 2598865-2599014 AATCCCGGTGAAATGGGCATGTAAGGAACTGGGTCTTGTGGCGACCGATACGCTGCGCCTGCCAATGACACCAATCACCGACAGTGGTCGTGAGACGGTCAGAGCGGCGCTTAAGCATGCCGGTTTGCTGTAAAGTTTAGGGAGATTTGA 2597803-2597831 AAAATACAGGGCTGGAATCATCCGGCCCT dapA-bamC dapA-nlpB dapAp 2599784 reverse dapA(2598882,2599760) bamC(2597831,2598865) rho-independent(2597803,2597824) 2597803-2599784 2599760-2599784 ACTTGTTTGCACAGAGGATGGCCCA 2597803-2597831 AAAATACAGGGCTGGAATCATCCGGCCCT gcvR gcvR gcvRp2 2599806 forward gcvR(2599906,2600478) gcvR(2599906,2600478) 2599806-2600478 2599806-2599906 TGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTT gcvR gcvR gcvRp1 2599879 forward gcvR(2599906,2600478) gcvR(2599906,2600478) 2599879-2600478 2599879-2599906 AACTCACCCCTTAAAGGAATAACCAGTT bcp bcp bcpp 2600437 forward bcp(2600478,2600948) bcp(2600478,2600948) 2600437-2600948 2600437-2600478 GTCAATTATTCCCAACATGATGAACAGGATGGAGTTAAGTAA hyfABCDEFGHIJR-focB hyfABCDEFGHIJR-focB hyfAp 2601171 forward hyfA(2601201,2601818) focB(2613934,2614782) 2601171-2614782 2601171-2601201 AATGTTTCATATCATTTTCAAGGAGCCGACA bepA-yfgD bepA-yfgD bepAp2 2616026 forward bepA(2616094,2617557) yfgD(2617578,2617937) 2616026-2617937 2616026-2616094 GGCGCGGTGGGAACGATATTTCACAGTATCGGTCAAATGACTATCTCCAGAAATACAGGATAGAGGTTA bepA-yfgD bepA-yfgD bepAp1 2616068 forward bepA(2616094,2617557) yfgD(2617578,2617937) 2616068-2617937 2616068-2616094 ATCTCCAGAAATACAGGATAGAGGTTA upp-uraA upp-uraA uppp 2620909 reverse upp(2620246,2620872) uraA(2618871,2620160) 2618871-2620909 2620872-2620909 GATTTTTTTTGTGGCTGCCCCTCAAAGGAGAAAGAGTA purMN purMN purMp 2621153 forward purM(2621197,2622234) purN(2622234,2622872) 2621153-2622872 2621153-2621197 GAATTTTATTTTTCTACCGCAAGTAACGCGTGGGGACCCAAGCAG ppk-ppx ppk-ppx ppkp 2622977 forward ppk(2623044,2625110) ppx(2625115,2626656) 2622977-2626656 2622977-2623044 ATCTGCCAATATTGCTCGCCATAATATCCAGGCAGTGTCCCGTGAATAAAACGGAGTAAAAGTGGTAA pdeF yfgF yfgFp 2629031 reverse pdeF(2626695,2628938) pdeF(2626695,2628938) 2626695-2629031 2628938-2629031 CTCTATAGTGATGAATAATCATCATTCGAAGTCAGGTGGGATGCCTGTCTGAATACACCTCCTTCAGGATGTGGGGGATTCTGCTGAGCATCTA yfgG yfgG yfgGp 2629252 forward yfgG(2629290,2629481) yfgG(2629290,2629481) 2629252-2629481 2629252-2629290 ACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTG guaBA guaBA guaBp 2634107 reverse guaB(2632604,2634070) guaA(2630958,2632535) rho-independent(2630906,2630933) 2630906-2634107 2634070-2634107 GCAATATTTATTAACCACTCTGGTCGAGATATTGCCCA 2630906-2630958 ATTTGACCCTGCACTATGAATGAACAAAACCCTCTGTTACTACAGAGGGTTTT xseA xseA xseAp 2634197 forward xseA(2634232,2635602) xseA(2634232,2635602) 2634197-2635602 2634197-2634232 AATAACCTGCTGATTTAGAATTTGATCTCGCTCACA bamB-der bamB-der bamBp 2638975 reverse bamB(2637474,2638652) der(2635884,2637356) 2635884-2638975 2638652-2638975 ACTAGAGAAAGCTGCCGCCCAGTTACAACAGGGGCTGGCAGACACGAGCGATGAAAATCTCAAAGCCGTGATAAATCTGCGTCTTGCTCGCGTTCAGGTACAGCTCAAGCAGGCTGATGCCGCGCTGAAAACCCTTGATACCATCAAAGGTGAAGGGTGGGCTGCCATTGTTGCCGACCTGCGTGGTGAAGCATTGCTGAGCAAAGGTGATAAGCAAGGTGCGCGTAGTGCATGGGAAGCAGGCGTGAAAAGCGATGTTACTCCGGCACTGAGCGAAATGATGCAGATGAAAATTAATAATTTGTCCATCTGAGAGGGACCCGA yfgM yfGM yfgMp3 2639370 reverse yfgM(2638663,2639283) yfgM(2638663,2639283) 2638663-2639370 2639283-2639370 GCGCTCTGGTGAGCAAACGGCAGTTGCGCAGGATAGCGTAGCCGCGCATTTGCGCACGTTACTGGGTTAAGGAAGGAGAAGGACAGCG yfgM yfgM yfgMp2 2639402 reverse yfgM(2638663,2639283) yfgM(2638663,2639283) 2638663-2639402 2639283-2639402 GTGGCTAACGGCACAGCAGTAGTGAAGGATTTGCGCTCTGGTGAGCAAACGGCAGTTGCGCAGGATAGCGTAGCCGCGCATTTGCGCACGTTACTGGGTTAAGGAAGGAGAAGGACAGCG yfgM yfgM yfgMp1 2639433 reverse yfgM(2638663,2639283) yfgM(2638663,2639283) 2638663-2639433 2639283-2639433 CCGCGTTGCTGTGGTGCTGGGTGAGTCTGAAGTGGCTAACGGCACAGCAGTAGTGAAGGATTTGCGCTCTGGTGAGCAAACGGCAGTTGCGCAGGATAGCGTAGCCGCGCATTTGCGCACGTTACTGGGTTAAGGAAGGAGAAGGACAGCG hisS hisS hisSp 2640642 reverse hisS(2639301,2640575) hisS(2639301,2640575) 2639301-2640642 2640575-2640642 CGCATGGCTCCCGAAACATTGAGGGAAGCGTTGAGGGTTCATTTTTATATTCAGAAAGAGAATAAACG yfhM-pbpC yfhM-pbpC yfhMp 2652324 reverse yfhM(2647326,2652287) pbpC(2645013,2647325) 2645013-2652324 2652287-2652324 CGACGTTGCTAACGGGCCATTGTGGCAGGGATGAAAAA sseA sseA sseAp 2652391 forward sseA(2652494,2653339) sseA(2652494,2653339) 2652391-2653339 2652391-2652494 AGTGAGAATTGTGGCTCAGACAGCCAAATCAGCCTCTTTTGCTTGTCGCTTTTCACTAAACATCCGACAATTTAGCCTAACCCCGGCAAAAATGGAGATGCCTA hscBA-fdx-iscX hscBA-fdx-iscX hscBp 2659524 reverse hscB(2658952,2659467) iscX(2656536,2656736) rho-independent(2656506,2656530) 2656506-2659524 2659467-2659524 GGGGTTTGTTTTACCTGATTCGCCGTTATCGCGGCGGATCGCAGCCCTGAGAATGTTA 2656506-2656536 ATTTCCGCGTCATGCTTCACGCCGCAGATGC iscRSUA iscRSUA iscRp 2662199 reverse iscR(2661643,2662131) iscA(2659563,2659886) 2659563-2662199 2662131-2662199 GCTATGCAATACCCCCACTTTTACAATAAAAAACCCCGGGCAGGGGCGAGTTTGAGGTGAAGTAAGACA csiE csiE csiEp 2665401 forward csiE(2665435,2666715) csiE(2665435,2666715) 2665401-2666715 2665401-2665435 ATTCTTATCAATTATGCTTATGGGAGATCTACAGA csiE csiE csiEp2 2665401 forward csiE(2665435,2666715) csiE(2665435,2666715) 2665401-2666715 2665401-2665435 ATTCTTATCAATTATGCTTATGGGAGATCTACAGA hcaR hcaR hcaRp 2668964 reverse hcaR(2668006,2668896) hcaR(2668006,2668896) 2668006-2668964 2668896-2668964 GGTTGCTAATATGTGAAATAGTTAATTTCTACCAGCTGAGACGTTTTTTCGATAACAAGGGGAAGGTGA hcaEFCBD hcaEFCBD hcaEp 2668982 forward hcaE(2669032,2670393) hcaD(2672047,2673249) 2668982-2673249 2668982-2669032 TGGCACAAAAATAGAAGGTCAATACATCTTATCTTTCAGGATTAAAAAATA glyA glyA glyAp 2685574 reverse glyA(2684254,2685507) glyA(2684254,2685507) rho-independent(2684075,2684093) 2684075-2685574 2685507-2685574 GCCGTTGTCCAACAGGACCGCCTATAAAGGCCAAAAATTTTATTGTTAGCTGAGTCAGGAGATGCGGA 2684075-2684254 AGCGAAACGGTGATTTGCTGTCAATGTGCTCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACTTTGCAAATTCAATATATTGCAATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTTCGTTTATGATCATCAAGGCTTCCTTCGGGAAGCCT hmp hmp hmpp 2685797 forward hmp(2685835,2687025) hmp(2685835,2687025) 2685797-2687025 2685797-2685835 GAGATACATCAATTAAGATGCAAAAAAAGGAAGACCATA glrR-glnB glnB glnBp1 2687441 reverse glnB(2687070,2687408) glnB(2687070,2687408) 2687070-2687441 2687408-2687441 ATCAAAAGACAGGCGACCTTTTCAAGGAATAGCA glrR-glnB glnB glnBp2 2687503 reverse glnB(2687070,2687408) glnB(2687070,2687408) 2687070-2687503 2687408-2687503 GACACGAGCTGGATGCAAACGATTTCAAGGAATGAATTGGCGTTATGTGTTACGTTTAGCAGATCAAAAGACAGGCGACCTTTTCAAGGAATAGCA glrR-glnB glnB glnBp3 2687526 reverse glnB(2687070,2687408) glnB(2687070,2687408) 2687070-2687526 2687408-2687526 AGAATTTTATAAACTGCTTTCCCGACACGAGCTGGATGCAAACGATTTCAAGGAATGAATTGGCGTTATGTGTTACGTTTAGCAGATCAAAAGACAGGCGACCTTTTCAAGGAATAGCA glrK glrK glrKp 2691123 reverse glrK(2689671,2691098) glrK(2689671,2691098) 2689671-2691123 2691098-2691123 ATTCGCGTCTGACGAGAGTAACACCT glmY glmY glmYp1 2691340 reverse glmY(2691157,2691340) glmY(2691157,2691340) rho-independent(2691157,2691185) 2691157-2691340 2691340-2691340 A glmY glmY glmYp2 2691340 reverse glmY(2691157,2691340) glmY(2691157,2691340) rho-independent(2691157,2691185) 2691157-2691340 2691340-2691340 A purL purL purLp 2695589 reverse purL(2691656,2695543) purL(2691656,2695543) 2691656-2695589 2695543-2695589 GTTTCCCCCCCTTGGGTACACCGAAAGCTTAGAAGACGAGAGACTTA mltF mltF mltFp 2695767 forward mltF(2695801,2697357) mltF(2695801,2697357) 2695767-2697357 2695767-2695801 AGCTGGGACGCGCACGACACAGAGAATTAACTAAT pgpC-tadA pgpC-tadA pgpCp 2698638 reverse pgpC(2697915,2698550) tadA(2697354,2697857) 2697354-2698638 2698550-2698638 CGATTGTTGCCGGAAAAGTGATGATCTATCTGTTAGGCTATGTAGTAGCGAAAATTAATCAGGATGTTTCAGTCCAGAGGAGTATGGTT shoB shoB shoBp 2700291 reverse shoB(2700117,2700197) shoB(2700117,2700197) 2700117-2700291 2700197-2700291 GTGCAGCATGCACCCTCAATAACTCGCACGTTCAGTTTTGGGGAGATGTAAGGGCTAATCTGAATGGCTGCATTCCTTGTTTAAGGAAAAACGAA ohsC ohsC ohsCp 2700518 forward ohsC(2700520,2700598) ohsC(2700520,2700598) 2700518-2700598 2700518-2700520 TTG rnc-era-recO-pdxJ-acpS pdxJ-acpS pdxJp 2701813 reverse pdxJ(2700998,2701729) acpS(2700618,2700998) 2700618-2701813 2701729-2701813 TAAACCTTTAAAGAGCAGGGAACTGTTCCGGCAGTTTATGCCTAAGCGAACGGTGAAAACACATTATGAATGATGAGGATTGTCA rnc-era-recO-pdxJ-acpS rnc-era rncp 2704223 reverse rnc(2703383,2704063) era(2702481,2703386) 2702481-2704223 2704063-2704223 GAAGTTTAAGGTTGGCACCTCCAGGTTGCCACGGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATGTATATCAGGTCTGTTTCGTGTGCTGAATTGTTGACGCATTTATTTATTGGTATCGCA rnc-era-recO-pdxJ-acpS rnc-era-recO-pdxJ-acpS rncp 2704223 reverse rnc(2703383,2704063) acpS(2700618,2700998) 2700618-2704223 2704063-2704223 GAAGTTTAAGGTTGGCACCTCCAGGTTGCCACGGCACACGAAACAGCGTTGGTCCCCATATACCGGTAAACTGAAACTGCAGCGAAGCAGTTAGCAGAACCATGTATATCAGGTCTGTTTCGTGTGCTGAATTGTTGACGCATTTATTTATTGGTATCGCA lepAB lepAB lepAp 2707196 reverse lepA(2705325,2707124) lepB(2704335,2705309) 2704335-2707196 2707124-2707196 AGACGTTAAGCTCAGAACAGCGACTTCTAAAAGCCTGGTTAACCGGGCATTAAGGCACAATAATCATACTTTA rseD-rpoE-rseABC rseABC rseAp3 2709632 reverse rseA(2708754,2709404) rseC(2707322,2707801) 2707322-2709632 2709404-2709632 GAGACAGATAGTTTTCCGAACTATTGAGTCCCTCCCGGAAGATTTACGCATGGCAATAACCTTGCGGGAGCTGGATGGCCTGAGCTATGAAGAGATAGCCGCTATCATGGATTGTCCGGTAGGTACGGTGCGTTCACGTATCTTCCGAGCGAGGGAAGCTATTGATAACAAAGTTCAACCGCTTATCAGGCGTTGACGATAGCGGGATACTGGATAAGGGTATTAGGCA rseD-rpoE-rseABC rpoE-rseABC rpoEp2a 2710087 reverse rpoE(2709437,2710012) rseC(2707322,2707801) 2707322-2710087 2710012-2710087 CTTGCTCAAATTGCAGCTAATGGAGTGGCGTTTCGATAGCGCGTGGAAATTTGGTTTGGGGAGACTTTACCTCGGA rseD-rpoE-rseABC rpoE-rseABC rpoEp 2710087 reverse rpoE(2709437,2710012) rseC(2707322,2707801) 2707322-2710087 2710012-2710087 CTTGCTCAAATTGCAGCTAATGGAGTGGCGTTTCGATAGCGCGTGGAAATTTGGTTTGGGGAGACTTTACCTCGGA rseD-rpoE-rseABC rpoE-rseABC rpoEp5 2710165 reverse rpoE(2709437,2710012) rseC(2707322,2707801) 2707322-2710165 2710012-2710165 AATGATCCGTCTACAGCATGACAAACAAAAACAGATGCGTTACGGAACTTTACAAAAACGAGACACTCTAACCCTTTGCTTGCTCAAATTGCAGCTAATGGAGTGGCGTTTCGATAGCGCGTGGAAATTTGGTTTGGGGAGACTTTACCTCGGA rseD-rpoE-rseABC rpoE-rseABC rpoEp1a 2710186 reverse rseD(2710009,2710164) rseC(2707322,2707801) 2707322-2710186 2710164-2710186 TGTAGACTTATAATGATAGATAA rseD-rpoE-rseABC rpoE-rseABC rpoEp4 2710230 reverse rseD(2710009,2710164) rseC(2707322,2707801) 2707322-2710230 2710164-2710230 AGTTAAATGGGCATTTCTACACAGATAATGCGATGTTCAGATTCTGTAGACTTATAATGATAGATAA rseD-rpoE-rseABC rpoE-rseABC rpoEp2b 2710339 reverse rseD(2710009,2710164) rseC(2707322,2707801) 2707322-2710339 2710164-2710339 TGTTACAGTTGCTAAACACGCTGACGCAGGGCGGCGAGAAAAAGAGAAGTTACTGGCTGGTGGAGGATTAGGTGGTGAAATAAAAAGGCCGTTGGGTTACTCTTCAGGCAGTTAAATGGGCATTTCTACACAGATAATGCGATGTTCAGATTCTGTAGACTTATAATGATAGATAA rseD-rpoE-rseABC rpoE-rseABC rseDp 2710339 reverse rseD(2710009,2710164) rseC(2707322,2707801) 2707322-2710339 2710164-2710339 TGTTACAGTTGCTAAACACGCTGACGCAGGGCGGCGAGAAAAAGAGAAGTTACTGGCTGGTGGAGGATTAGGTGGTGAAATAAAAAGGCCGTTGGGTTACTCTTCAGGCAGTTAAATGGGCATTTCTACACAGATAATGCGATGTTCAGATTCTGTAGACTTATAATGATAGATAA nadB nadB nadBp 2710357 forward nadB(2710420,2712042) nadB(2710420,2712042) 2710357-2712042 2710357-2710420 TGTTTATCCGCACAACATGATGCTATGCTGACCAAACCATGTTTAGTAAATTAAACAAAGAAAA rseD-rpoE-rseABC rpoE-rseABC rpoEp1b 2710393 reverse rseD(2710009,2710164) rseC(2707322,2707801) 2707322-2710393 2710164-2710393 GTTTGGTCAGCATAGCATCATGTTGTGCGGATAAACACCTGCTATTTTAATATTTGTTACAGTTGCTAAACACGCTGACGCAGGGCGGCGAGAAAAAGAGAAGTTACTGGCTGGTGGAGGATTAGGTGGTGAAATAAAAAGGCCGTTGGGTTACTCTTCAGGCAGTTAAATGGGCATTTCTACACAGATAATGCGATGTTCAGATTCTGTAGACTTATAATGATAGATAA grcA grcA grcAp2 2716506 reverse grcA(2716066,2716449) grcA(2716066,2716449) 2716066-2716506 2716449-2716506 TACCAATTGGCCGCGACAGGCTGAACAAATCAAATAATTTTGCCGGGGAGGCATCACA grcA grcA grcAp1 2716523 reverse grcA(2716066,2716449) grcA(2716066,2716449) 2716066-2716523 2716449-2716523 TCAAGCAACAATGGTTTTACCAATTGGCCGCGACAGGCTGAACAAATCAAATAATTTTGCCGGGGAGGCATCACA ung ung ungp 2716738 forward ung(2716754,2717443) ung(2716754,2717443) 2716738-2717443 2716738-2716754 TTCGCAGGAGAGCGAGA trxC trxC trxCp 2718675 forward trxC(2718735,2719154) trxC(2718735,2719154) 2718675-2719154 2718675-2718735 ATATTAGAAACATACCGGCGTCGTTGCCGATAAGTCTCCTTACTCATCCCGAGGTTAGTTA tapT-patZ patZ pkap 2719931 forward patZ(2719953,2722613) patZ(2719953,2722613) 2719931-2722613 2719931-2719953 GTCACTTCTGCGGGAGACCGGTA pssA pssA pssAp 2722668 forward pssA(2722727,2724082) pssA(2722727,2724082) 2722668-2724082 2722668-2722727 CTTATGTCGTCTGCATTGCACAGAGGACCCTTCAATGAACAGAGAAGAAATGCACTGTGA rrsG-gltW-rrlG-rrfG rrsG-gltW-rrlG-rrfG rrsGp2 2731332 reverse rrsG(2729616,2731157) rrfG(2726069,2726188) 2726069-2731332 2731157-2731332 CCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA rrsG-gltW-rrlG-rrfG rrsG-gltW-rrlG-rrfG rrsGp1 2731448 reverse rrsG(2729616,2731157) rrfG(2726069,2726188) 2726069-2731448 2731157-2731448 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCGGCGGGGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA rrsG-gltW-rrlG-rrfG rrsG-gltW-rrlG-rrfG rrsGp 2731448 reverse rrsG(2729616,2731157) rrfG(2726069,2726188) 2726069-2731448 2731157-2731448 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCGGCGGGGTTCTCCTGAGAATCTCAACAGAGAAAAGCAAAGAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA clpB clpB clpBp 2734205 reverse clpB(2731600,2734173) clpB(2731600,2734173) rho-independent(2731557,2731611) 2731557-2734205 2734173-2734205 AGTAGCAACTTTGATCCGTTATGGGAGGAGTTA 2731557-2731600 AATGATAAAACGAGCCCTTCGGGGCTCGTTTTTGTCTATAAGTT clpB clpB clpBp2 2734205 reverse clpB(2731600,2734173) clpB(2731600,2734173) rho-independent(2731557,2731611) 2731557-2734205 2734173-2734205 AGTAGCAACTTTGATCCGTTATGGGAGGAGTTA 2731557-2731600 AATGATAAAACGAGCCCTTCGGGGCTCGTTTTTGTCTATAAGTT ryfD ryfD ryfDp 2734295 reverse ryfD(2734153,2734295) ryfD(2734153,2734295) 2734153-2734295 2734295-2734295 A bamD bamD bamDp2 2735961 forward bamD(2736146,2736883) bamD(2736146,2736883) 2735961-2736883 2735961-2736146 ACCGAGTTGGTTTTCGGACACCGTTGCAGTGAGCTGTACTCGTTGTGCCATATATACTGCTTCTTCGTTTATCGTTGGGGTTTTACGGCTTTGCCGTTTAATATAGTGTGCTATTGTAGCTGGTCTTAACCGGGAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCA bamD bamD bamDp1 2736006 forward bamD(2736146,2736883) bamD(2736146,2736883) 2736006-2736883 2736006-2736146 TGCCATATATACTGCTTCTTCGTTTATCGTTGGGGTTTTACGGCTTTGCCGTTTAATATAGTGTGCTATTGTAGCTGGTCTTAACCGGGAGCAGGAACAGAGAATCTCCCGTATTACATTTTGAGGAAAGTCAAAACGTCA raiAZ raiAZ raiAp 2737104 forward raiA(2737154,2737495) raiZ(2737381,2737542) rho-independent(2737498,2737552) 2737104-2737552 2737104-2737154 AGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTA 2737542-2737552 TGTTGACAGCG pheLA pheLA pheLp 2737579 forward pheL(2737599,2737646) pheA(2737745,2738905) rho-independent(2738912,2738940) 2737579-2738940 2737579-2737599 AGTCACTTAAGGAAACAAACA 2738905-2738940 ATGAAAAGGTGCCGGATGATGTGAATCATCCGGCAC aroF-tyrA aroF-tyrA aroFp 2741201 reverse aroF(2740080,2741150) tyrA(2738948,2740069) rho-independent(2738912,2738940) 2738912-2741201 2741150-2741201 ATCCTCGCTGAGGATCAACTATCGCAAACGAGCATAAACAGGATCGCCATCA 2738912-2738948 ATAATCCAGTGCCGGATGATTCACATCATCCGGCACC yfiR-dgcN-yfiB yfiR-dgcN-yfiB yfiRp 2741824 forward yfiR(2741875,2742393) yfiB(2743625,2744107) rho-independent(2744115,2744169) 2741824-2744169 2741824-2741875 ATTCTGAAAAAATATCGATGCATTTCGAGCGAAGATGGTGGGGATCCCTGAA 2744107-2744169 AAACACCAGCAAACAGATAAAAAAGGGCCAGCCAATTGGCCAGCCCTTCTTAACAGGATGTCG rpsP-rimM-trmD-rplS rpsP-rimM-trmD-rplS rpsPp 2746254 reverse rpsP(2745937,2746185) rplS(2744183,2744530) rho-independent(2744115,2744169) 2744115-2746254 2746185-2746254 GCTTTTAATATGACACCGGACTCCGTTCCTCGATGGGGTCCGGTTGTTTTATTCACACAAGAGGATGTTA 2744115-2744183 AGATTTCGCTTAAGCGACATCCTGTTAAGAAGGGCTGGCCAATTGGCTGGCCCTTTTTTATCTGTTTGC ffh ffh ffhp 2747853 reverse ffh(2746434,2747795) ffh(2746434,2747795) rho-independent(2746209,2746241) 2746209-2747853 2747795-2747853 AAAATACTGATGATGTGTCGCGATTGCGGCCAACCGTTTCCACCCCAGGCGAGAGACAA 2746209-2746434 ATCGGCCTGGCTTGTTTGCCATTTTGGCACCGGGATGTGCTCGTCATCCTCACGTACTGCGTGTACGCTCCGGTGACTGCGCGCACTCCGGCACCAAACTGGCTGCACCGCCGACGGCCTTTTACAGCAGAGTTAGCAACTGTTGATTGCAATTCCCGCAAAAATGAGTAAAATTTTCGGGCTTTTAATATGACACCGGACTCCGTTCCTCGATGGGGTCCGGTTG grpE grpE grpEp 2750747 reverse grpE(2750115,2750708) grpE(2750115,2750708) 2750115-2750747 2750708-2750747 AGTTAGCGAGATGAATGCGAAAAAAACGCGGAGAAATTCA recN recN recNp 2751759 forward recN(2751795,2753456) recN(2751795,2753456) 2751759-2753456 2751759-2751795 AATAACAGTAATGGTTTTTCATACAGGAAAACGACTA bamE bamE bamEp 2753486 forward bamE(2753605,2753946) bamE(2753605,2753946) 2753486-2753946 2753486-2753605 ACAGCAAAACGCCGTAAGACCGGAAAGCAAAAGGTTTTAAAGTGATGAAAGGTCTATTATCATCGGCATATTACAGATGAGCCACGTACTGCTCGGGCCCGAAAAGGAATCAAATCACTA ssrA ssrA ssrAp 2755586 forward ssrA(2755593,2755955) ssrA(2755593,2755955) 2755586-2755955 2755586-2755593 ACACATTG rnlAB rnlAB rnlAp2 2765894 forward rnlA(2765918,2766991) rnlB(2766984,2767355) 2765894-2767355 2765894-2765918 ATATGTTTCTATGGGATCCAGGAAA rnlAB rnlA rnlAp1 2765906 forward rnlA(2765918,2766991) rnlA(2765918,2766991) 2765906-2766991 2765906-2765918 GGGATCCAGGAAA rnlAB rnlB rnlBp1 2766707 forward rnlB(2766984,2767355) rnlB(2766984,2767355) 2766707-2767355 2766707-2766984 AAGATGAGTGGGTTAGGCATGCCAGTACAGCAGCCGGCAGGTTTTGGAACTTACTTTGATAAACCTGCTGCTCATTACATTCTGAAACCGCAATTTGCAGCTACTCTTAGACCGGAACAGATTAACATCATCAGCACAGCCTATACTTTTTTTAATGTGGAACGTCATTCTCTGTTCCACATGGAAACTGTGGTCGATGCCAGCCGTATGATTTCTGATATGGCCCGGTTGATGGGTAAAGCCACTAGAGCGTGGGGAATAATCAAGGACTTATATAT rnlAB rnlB rnlBp2 2766860 forward rnlB(2766984,2767355) rnlB(2766984,2767355) 2766860-2767355 2766860-2766984 AATGTGGAACGTCATTCTCTGTTCCACATGGAAACTGTGGTCGATGCCAGCCGTATGATTTCTGATATGGCCCGGTTGATGGGTAAAGCCACTAGAGCGTGGGGAATAATCAAGGACTTATATAT ypjB ypjB ypjBp 2784818 reverse ypjB(2783638,2784429) ypjB(2783638,2784429) 2783638-2784818 2784429-2784818 ATCAAGAAGGCAACGCCTTTGTCATTATGGGAGCTGGAGAACAATTAAAACGTATTAAATATGAAGTTGGTGAAAATAACTTAAAGGTATTCAACGTACACTTTAATAATAATCACGAGTTAGTTAGTTCTGGTGAGCCTGACGTAATATGTTTAAGCAAGCAGGTCTGGGAAAATCTTCTCATTAAACTAAAGCTGGAAAACAATGAAAATGTGTTTTCTGAAACTAAAAAATTATCGAATAAAAATAATGCCGATCAGTTTTTTGAATGCGCTAAAAGAAATGAATAGAACCTTTTCGATAATATAAGAAAAAGTGATTTTCATGTTGGTTTACTTAAGCCAAGTAGTACGCGTAGTGTTATTTTAGAAACGCCGCCAAATGTCTGTA glaH-lhgD-gabDTP csiD-ygaF-gabDTP csiDp 2788927 forward glaH(2788985,2789962) gabP(2794253,2795653) 2788927-2795653 2788927-2788985 ATGGCTACGAAATGAGCATCGCCATGTCACCCTACATCTCATAAGAGGATCGCTTCTGA glaH-lhgD-gabDTP gabDTP gabDp2 2790912 forward gabD(2791273,2792721) gabP(2794253,2795653) 2790912-2795653 2790912-2791273 GGCGAGATGAAAAACTCGCTGTGCAAAAGCGGCTATCTGCGGCTGGTGCAAAAGTATTGTCCCCGGCTTTCGTTAAGCGATCTCCAGCCCTGGCCCGCCGGTGTGCGGGCGCAGGCGGTATCGCCGGACGGCAAGCTGATTGACGATTTTCTGTTTGTCACCACCCCGCGCACGATCCACACCTGCAATGCGCCCTCCCCGGCAGCGACATCAGCAATTCCTATTGGTGCGCATATTGTCAGCAAGGTACAAACGCTGTTGGCAAGCCAGAGTAACCCCGGACGCACGCTGCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGA glaH-lhgD-gabDTP gabDTP gabDp1 2791172 forward gabD(2791273,2792721) gabP(2794253,2795653) 2791172-2795653 2791172-2791273 GGCAAGCCAGAGTAACCCCGGACGCACGCTGCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGA glaH-lhgD-gabDTP gabDTP gabDp 2791172 forward gabD(2791273,2792721) gabP(2794253,2795653) 2791172-2795653 2791172-2791273 GGCAAGCCAGAGTAACCCCGGACGCACGCTGCGAGCGGCACGTAGTGTGGATGCCTTACACGCCGCATTTAATCAATAACCTTTGAAAACAGGATGTAGCGA yqaE-kbp kbp kbpp4 2796814 reverse kbp(2796337,2796786) kbp(2796337,2796786) 2796337-2796814 2796786-2796814 AGTGTTTCCGTTAACGAATGAGGTAGCTA yqaE-kbp yqaE yqaEp 2797085 reverse yqaE(2796870,2797028) yqaE(2796870,2797028) 2796870-2797085 2797028-2797085 GCTTAAGAGATAAAATCTCTTTTTAAACAATGAGTAATTTTCTTATAGGGAGTACATA yqaE-kbp yqaE-kbp yqaEp 2797085 reverse yqaE(2796870,2797028) kbp(2796337,2796786) 2796337-2797085 2797028-2797085 GCTTAAGAGATAAAATCTCTTTTTAAACAATGAGTAATTTTCTTATAGGGAGTACATA stpA stpA stpAp1 2798536 reverse stpA(2798091,2798495) stpA(2798091,2798495) 2798091-2798536 2798495-2798536 AAATACTTTTTTTGTTTTGGCGTTAAAAGGTTTTCTTTATTA stpA stpA stpAp2 2798556 reverse stpA(2798091,2798495) stpA(2798091,2798495) 2798091-2798556 2798495-2798556 ATCGCTTACACTACGCGACGAAATACTTTTTTTGTTTTGGCGTTAAAAGGTTTTCTTTATTA stpA stpA stpAp3 2798578 reverse stpA(2798091,2798495) stpA(2798091,2798495) 2798091-2798578 2798495-2798578 TTTTGTGGAAATATAATAAGTGATCGCTTACACTACGCGACGAAATACTTTTTTTGTTTTGGCGTTAAAAGGTTTTCTTTATTA alaE alaE alaEp 2799084 forward alaE(2799164,2799613) alaE(2799164,2799613) 2799084-2799613 2799084-2799164 GCGAAAATGCAGATGGCAATGAGATCCACTGCTTTCATCTCCATTAACATCCCATTACGCTTTTATTAAGGAGCATTAGCA ygaM ygaM ygaMp 2800121 forward ygaM(2800146,2800475) ygaM(2800146,2800475) 2800121-2800475 2800121-2800146 ACATCGAATTCTAATGGGGGATCATA ygaC ygaC ygaCp 2800590 reverse ygaC(2799650,2799994) ygaC(2799650,2799994) 2799650-2800590 2799994-2800590 ATTACCCTGGATATGAGCGTGACGGGGTAGGGGGATTTTTGTGATTCACCAGGCAAAAAGAAACCCCGAAGACAGGCTTCGGGGTCAAAGACGCGTATTTATTATCATTTTTGCACTACGATTTGCGCATGCTTAACAGTGCGCCGATAAAAATACCTACCGCAGCTGCTGTACCCACGCTACACCAGGGTCTTTCACGAACAAAAGAATCCGCGCAGCCAACGGCATCGCGCGCGGCTTGCTGGACGCGAGTACGACCATGCATTCGCGCCCTGGTTTCTTTCAGCAATGCCTGAGCTTTACTGCGTGCGGCTTCAGCTTCCCCTTTGGCGTCGCTGCCCCAGGACTTCAATACAGATTCGAGGCTGTCAGCTAATTGATTGACATCATTCTGGATATCCTGCACGCCATCATCAACGTCGTTGCGGTTCGGTCGGTTAAACATATGATCCCCCATTAGAATTCGATGTAATTTTCAGTGTAGACCATAATTTTCTTAACTGAGGTTCATCGCGGCTTTATGGACTTTTCTGAAAGCGTTGTGAATGCGCAATCAGGTAAGGTAGGCCCGCGGTTGATAATAACGAGGATCAAATA nrdHIEF nrdHIEF nrdHp 2800656 forward nrdH(2800723,2800968) nrdF(2803502,2804461) 2800656-2804461 2800656-2800723 ATCAACAGAGAGACAACCCGACGCGTATCATCGCGCCGTATCTTCATTTTAAACGGAAATACGAATCA proVWX proVWX proVp1 2804563 forward proV(2804815,2806017) proX(2807132,2808124) 2804563-2808124 2804563-2804815 CTGTTGCATTATTCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGACAAATAAAGGAATCTTTCTATTGCA proVWX proVWX proVp 2804563 forward proV(2804815,2806017) proX(2807132,2808124) 2804563-2808124 2804563-2804815 CTGTTGCATTATTCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGACAAATAAAGGAATCTTTCTATTGCA proVWX proVWX proVp2 2804599 forward proV(2804815,2806017) proX(2807132,2808124) 2804599-2808124 2804599-2804815 CGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGACAAATAAAGGAATCTTTCTATTGCA proVWX proVWX proVp3 2804755 forward proV(2804815,2806017) proX(2807132,2808124) 2804755-2808124 2804755-2804815 AGTGACTATTTCCATTGGGTAATATATCGACATAGACAAATAAAGGAATCTTTCTATTGCA mprA-emrAB emrRAB mprAp 2810747 forward mprA(2810770,2811300) emrB(2812616,2814154) 2810747-2814154 2810747-2810770 GAAATTAATGAGGTCATACCCAAA micA micA micAp 2814802 forward micA(2814802,2814874) micA(2814802,2814874) 2814802-2814874 2814802-2814802 G luxS luxS luxSp2 2814816 reverse luxS(2814218,2814733) luxS(2814218,2814733) 2814218-2814816 2814733-2814816 AAATGCGCGTCTTTCATATACTCAGACTCGCCTGGGAAGAAAGAGTTCAGAAAATTTTTAAAAAAATTACCGGAGGTGGCTAAA luxS luxS luxSp1 2815065 reverse luxS(2814218,2814733) luxS(2814218,2814733) 2814218-2815065 2814733-2815065 GGTATTGGCGGAACAGGCAAAGCATTTGCAGAAGCCTACCGTAATCTGCTGCGTGAAGAGCCGCTGGAAATTCTGCGCGAAGAGGATTTTGTAGCCGAGCGCGAGGCGTCTGAACGCCGTCAGCAGGAAATGGAAGCCGCTGATACCGAACCGTTTGCGGTGTGGCTGGAAAAACACGCCTGACAGAAAAGAAAAAGGCCACTCGTGAGTGGCCAAAATTTCATCTCTGAATTCAGGGATGATGATAACAAATGCGCGTCTTTCATATACTCAGACTCGCCTGGGAAGAAAGAGTTCAGAAAATTTTTAAAAAAATTACCGGAGGTGGCTAAA serV-argVYZQ serV-argVYZQ serVp 2818697 reverse serV(2818553,2818645) argQ(2817784,2817860) 2817784-2818697 2818645-2818697 CAGCGACGATGAGCGATAAACAAGTTCTTCGAAGCACTCGTAAGAGGCGTGTG csrA csrA csrAp5 2819189 reverse csrA(2818961,2819146) csrA(2818961,2819146) 2818961-2819189 2819146-2819189 ATACAGAGAGACCCGACTCTTTTAATCTTTCAAGGAGCAAAGAA csrA csrA csrAp4 2819198 reverse csrA(2818961,2819146) csrA(2818961,2819146) 2818961-2819198 2819146-2819198 AATGCCGGGATACAGAGAGACCCGACTCTTTTAATCTTTCAAGGAGCAAAGAA csrA csrAp3 2819273 reverse csrA(2818961,2819146) csrA(2818961,2819146) 2818961-2819273 2819146-2819273 AACAGAATGTAATGCCATGACTGCTTAGATGTAATGTGTTTGTCATTGCTTACTTTTTGGCGTTATATGATGGATAATGCCGGGATACAGAGAGACCCGACTCTTTTAATCTTTCAAGGAGCAAAGAA csrA csrA csrAp2 2819370 reverse csrA(2818961,2819146) csrA(2818961,2819146) 2818961-2819370 2819146-2819370 AGGCAATGCCGTGGACTCGCTTCACGGCATTCGCATTAACGCTATCGACAACGATAAAGTCAGGTTGAAGTTGTGTATATCGGCTAAACTTAGGTTTAACAGAATGTAATGCCATGACTGCTTAGATGTAATGTGTTTGTCATTGCTTACTTTTTGGCGTTATATGATGGATAATGCCGGGATACAGAGAGACCCGACTCTTTTAATCTTTCAAGGAGCAAAGAA csrA csrA csrAp1 2819373 reverse csrA(2818961,2819146) csrA(2818961,2819146) 2818961-2819373 2819146-2819373 GTCAGGCAATGCCGTGGACTCGCTTCACGGCATTCGCATTAACGCTATCGACAACGATAAAGTCAGGTTGAAGTTGTGTATATCGGCTAAACTTAGGTTTAACAGAATGTAATGCCATGACTGCTTAGATGTAATGTGTTTGTCATTGCTTACTTTTTGGCGTTATATGATGGATAATGCCGGGATACAGAGAGACCCGACTCTTTTAATCTTTCAAGGAGCAAAGAA csrA csrA csrAp 2819373 reverse csrA(2818961,2819146) csrA(2818961,2819146) 2818961-2819373 2819146-2819373 GTCAGGCAATGCCGTGGACTCGCTTCACGGCATTCGCATTAACGCTATCGACAACGATAAAGTCAGGTTGAAGTTGTGTATATCGGCTAAACTTAGGTTTAACAGAATGTAATGCCATGACTGCTTAGATGTAATGTGTTTGTCATTGCTTACTTTTTGGCGTTATATGATGGATAATGCCGGGATACAGAGAGACCCGACTCTTTTAATCTTTCAAGGAGCAAAGAA alaS alaS alaSp 2822090 reverse alaS(2819381,2822011) alaS(2819381,2822011) 2819381-2822090 2822011-2822090 ACTTTTCAGTTACCAGCCCGGCGGTTAAGACACGCTGGAGCTGGTGGCGATATTTCGTTAGCTTGATTTCAGGATAATTA recAX recAX recAp 2823819 reverse recA(2822708,2823769) recX(2822139,2822639) 2822139-2823819 2823769-2823819 CAACAGAACATATTGACTATCCGGTATTACCCGGCATGACAGGAGTAAAAA recAX recA recAp 2823819 reverse recA(2822708,2823769) recA(2822708,2823769) rho-independent(2822670,2822687) 2822670-2823819 2823769-2823819 CAACAGAACATATTGACTATCCGGTATTACCCGGCATGACAGGAGTAAAAA 2822670-2822708 ATCGTCTTGTTTGATACACAAGGGTCGCATCTGCGGCCC pncC pncC pncCp 2824394 reverse pncC(2823849,2824346) pncC(2823849,2824346) 2823849-2824394 2824346-2824394 GAAAGTGCTATCTTGTCCGGCATAAATTTTTGACTGACAGAGGTTGTGA srlAEBD-gutM-srlR-gutQ srlAEBD-gutM-srlR-gutQ srlAp 2825791 forward srlA(2825832,2826395) gutQ(2829813,2830778) 2825791-2830778 2825791-2825832 GCCGTTTGGTAATAAAACAATAAATCCTGAAGGAGAGAACAA srlAEBD-gutM-srlR-gutQ srlR srlRp 2828860 forward srlR(2829047,2829820) srlR(2829047,2829820) 2828860-2829820 2828860-2829047 GCAAAAAATTCCCGCAATTACCGGTATGCATGCGGGTGATTTACAGCCCGATGTGATCTTTCCCCATGATCCACTATCACAGAATGCTCTATCATTGGCGCTTAAACTGAAACGTGGATAATTTCGTTGTGAATGTTACTTGCTTGCGAAGTTATCATTTTGAAACCTAAATCAGGTAATCACGCCCA norR norR norRp 2832307 reverse norR(2830775,2832289) norR(2830775,2832289) 2830775-2832307 2832289-2832307 ATTGACAGTGAGGCAAAGA norVW norVW norVp 2832439 forward norV(2832476,2833915) norW(2833912,2835045) 2832439-2835045 2832439-2832476 CATCTTTTTAGAACACGCTGAATAAATTGAGGTTGCTA hydN-hypF hypF hypFp2 2838014 reverse hypF(2835173,2837425) hypF(2835173,2837425) 2835173-2838014 2837425-2838014 ACTGTGCATCGCTGACCCCGGAAACTTTTTTACCGCGTATCCATGTCATTAAAGGTGTGAACATTTCCACGGCGACAGTTTGCCGTCAGTGTGAAGATGCACCGTGCGCTAACGTCTGCCCGAATGGTGCTATCAGCCGTGATAAAGGGTTTGTTCATGTGATGCAGGAACGTTGCATTGGTTGCAAAACCTGCGTTGTGGCTTGCCCGTATGGTGCGATGGAAGTGGTGGTACGTCCGGTGATCCGCAACAGCGGCGCGGGTCTGAATGTACGGGCTGACAAAGCCGAAGCCAATAAATGCGACCTGTGCAACCATCGTGAAGACGGCCCGGCGTGTATGGCGGCTTGCCCGACTCATGCGCTGATTTGTGTCGATCGTAATAAACTTGAACAACTGAGCGCAGAAAAACGCCGCCGTACGGCGCTGATGTTCTAAAAATCTTACAGAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAA hydN-hypF hypF hypFp3 2838105 reverse hypF(2835173,2837425) hypF(2835173,2837425) 2835173-2838105 2837425-2838105 ATGAACCGTTTCATCATTGCTGACGCGAGTAAATGTATTGGTTGCCGTACCTGTGAAGTAGCGTGCGTGGTTTCTCATCAGGAAAATCAGGACTGTGCATCGCTGACCCCGGAAACTTTTTTACCGCGTATCCATGTCATTAAAGGTGTGAACATTTCCACGGCGACAGTTTGCCGTCAGTGTGAAGATGCACCGTGCGCTAACGTCTGCCCGAATGGTGCTATCAGCCGTGATAAAGGGTTTGTTCATGTGATGCAGGAACGTTGCATTGGTTGCAAAACCTGCGTTGTGGCTTGCCCGTATGGTGCGATGGAAGTGGTGGTACGTCCGGTGATCCGCAACAGCGGCGCGGGTCTGAATGTACGGGCTGACAAAGCCGAAGCCAATAAATGCGACCTGTGCAACCATCGTGAAGACGGCCCGGCGTGTATGGCGGCTTGCCCGACTCATGCGCTGATTTGTGTCGATCGTAATAAACTTGAACAACTGAGCGCAGAAAAACGCCGCCGTACGGCGCTGATGTTCTAAAAATCTTACAGAACTGTTCTGGCATCAAAGGAATTCCCGGAAATATTCGTAGAATACGGAGCGGGCGGTATCGCCGACCTGTGACTGCCGGATGCGACGCTGTCGTGTCCGGCAGGGCGGGTTACGCAATTCATGATGGCGGGAATAACTCAA hydN-hypF hydN-hypF hydNp 2838132 reverse hydN(2837578,2838105) hypF(2835173,2837425) 2835173-2838132 2838105-2838132 CATTAACTGTCATTGCTGGAGAATTTGA ascFB ascFB ascFp 2839429 forward ascF(2839524,2840981) ascB(2840990,2842414) 2839429-2842414 2839429-2839524 AACCGGTTTCTTAATTCCGTTTCAGCATCGGCATTTTTCCGTCACGTCGACTGATAACAACTACATCTACCCTACTGATAACAGGATAAAATCCGA ascFB ascB ascBp 2840942 forward ascB(2840990,2842414) ascB(2840990,2842414) 2840942-2842414 2840942-2840990 CGTACAACCGACCGTCGCCAAAGAAGTAAGTCTTAATTGAGGATGAAAA hycABCDEFGHI hycABCDEFGHI hycAp 2850461 reverse hycA(2849974,2850435) hycI(2842573,2843043) rho-independent(2842477,2842501) 2842477-2850461 2850435-2850461 ATCTCTGTTAAACGGGTAACCTGACAA 2842477-2842573 GTTTTTCATTAAGGAATCAGGACAGGGATGTTCTTGATGGGGTGAACCAGCTCTGATGCCAAATGCTAAATTGCCCGATGCGCTGCGCTTATCGGGC hypABCDE-fhlA hypABCDE hypAp 2850627 forward hypA(2850647,2850997) hypE(2853254,2854264) rho-independent(2854304,2854321) 2850627-2854321 2850627-2850647 AATAGTTAATGGGAGGCGATA 2854264-2854321 ATAAAATTCTAAATCTCCTATAGTTAGTCAATGACCTTTTGCACCGCTTTGCGGTGCT hypABCDE-fhlA hypABCDE-fhlA hypAp 2850627 forward hypA(2850647,2850997) fhlA(2854338,2856416) 2850627-2856416 2850627-2850647 AATAGTTAATGGGAGGCGATA hypABCDE-fhlA hypBCDE hypBp 2850839 forward hypB(2851001,2851873) hypE(2853254,2854264) rho-independent(2854304,2854321) 2850839-2854321 2850839-2851001 GAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGA 2854264-2854321 ATAAAATTCTAAATCTCCTATAGTTAGTCAATGACCTTTTGCACCGCTTTGCGGTGCT hypABCDE-fhlA hypBCDE-fhlA hypBp 2850839 forward hypB(2851001,2851873) fhlA(2854338,2856416) 2850839-2856416 2850839-2851001 GAAGAACAAGAGGCCGAATGCTGGTGTGAAACATGCCAACAGTATGTGACGCTACTGACCCAGCGCGTCCGCCGCTGTCCACAGTGTCATGGTGACATGCTGCAGATTGTGGCAGACGACGGTTTACAGATTCGGCGGATAGAAATAGACCAGGAGTGAGCGA ygbA ygbA ygbAp 2856828 reverse ygbA(2856453,2856806) ygbA(2856453,2856806) 2856453-2856828 2856806-2856828 ATCTTAATGAGGTGGAGGCAGCA mutS mutS mutSp 2857019 forward mutS(2857093,2859654) mutS(2857093,2859654) 2857019-2859654 2857019-2857093 TGCGCCTTATGTGATTACAACGAAAATAAAAACCATCACACCCCATTTAATATCAGGGAACCGGACATAACCCCA ygbJK ygbK ygbKp 2862197 forward ygbK(2862335,2863501) ygbK(2862335,2863501) 2862197-2863501 2862197-2862335 AGCCCTGCACTTCCCGCTGCCATTGGCCTCAACAGCATTGAATATGTTCACCAGCGCCAGTAACGCGGGTTACGGGAAAGAAGACGATAGCGCAGTTATCAAGATTTTCTCTGGCATCACTCTACCGGGAGCGAAATCA nlpD-rpoS rpoS rpoSp1 2867567 reverse rpoS(2866559,2867551) rpoS(2866559,2867551) 2866559-2867567 2867551-2867567 GGGTAGGAGCCACCTTA nlpD-rpoS rpoS rpoSp2 2867607 reverse rpoS(2866559,2867551) rpoS(2866559,2867551) 2866559-2867607 2867551-2867607 GGAACCAGGCTTTTGCTTGAATGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTA nlpD-rpoS rpoS rpoSp3 2867654 reverse rpoS(2866559,2867551) rpoS(2866559,2867551) 2866559-2867654 2867551-2867654 GGAAATCCGTAAACCCGCTGCGTTATTTGCCGCAGCGATAAATCGGCGGAACCAGGCTTTTGCTTGAATGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTA nlpD-rpoS rpoS rpoSp4 2867724 reverse rpoS(2866559,2867551) rpoS(2866559,2867551) 2866559-2867724 2867551-2867724 CAAAAAATAGCGACCATGGGTAGCACCGGAACCAGTTCAACACGCTTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAACCCGCTGCGTTATTTGCCGCAGCGATAAATCGGCGGAACCAGGCTTTTGCTTGAATGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTA nlpD-rpoS rpoS rpoSp 2868118 reverse rpoS(2866559,2867551) rpoS(2866559,2867551) 2866559-2868118 2867551-2868118 TTCGGGTGAACAGAGTGCTAACAAAATGTTGCCGAACAACAAGCCAACTGCGACCACGGTCACAGCGCCTGTAACGGTACCAACAGCAAGCACAACCGAGCCGACTGTCAGCAGTACATCAACCAGTACGCCTATCTCCACCTGGCGCTGGCCGACTGAGGGCAAAGTGATCGAAACCTTTGGCGCTTCTGAGGGGGGCAACAAGGGGATTGATATCGCAGGCAGCAAAGGACAGGCAATTATCGCGACCGCAGATGGCCGCGTTGTTTATGCTGGTAACGCGCTGCGCGGCTACGGTAATCTGATTATCATCAAACATAATGATGATTACCTGAGTGCCTACGCCCATAACGACACAATGCTGGTCCGGGAACAACAAGAAGTTAAGGCGGGGCAAAAAATAGCGACCATGGGTAGCACCGGAACCAGTTCAACACGCTTGCATTTTGAAATTCGTTACAAGGGGAAATCCGTAAACCCGCTGCGTTATTTGCCGCAGCGATAAATCGGCGGAACCAGGCTTTTGCTTGAATGTTCCGTCAAGGGATCACGGGTAGGAGCCACCTTA nlpD-rpoS nlpD-rpoS nlpDp2 2868782 reverse nlpD(2867614,2868753) rpoS(2866559,2867551) 2866559-2868782 2868753-2868782 GTTATTAACCAATTTTTCCTGGGGGATAAA nlpD-rpoS nlpD-rpoS nlpDp1 2868829 reverse nlpD(2867614,2868753) rpoS(2866559,2867551) 2866559-2868829 2868753-2868829 CTTTTCCAGTGTTCAGTAGGGTGCCTTGCACGGTAATTATGTCACTGGTTATTAACCAATTTTTCCTGGGGGATAAA umpG-pcm umpG-pcm surEp2 2870686 reverse umpG(2869513,2870274) pcm(2868893,2869519) 2868893-2870686 2870274-2870686 GTTGCTGAGCGCCTCAAAAAAGCAGACGTTAATCAAGTTGTTGACGGCGATGCGCTACAATTAGCCGGACGTGGTAGCTGGTTTGTCGCAACCACCGAAGAACTGGCGGAATTACAGCGTCGCGTCAACGATAAAGAGTTGATGATAACCGCCGCATTGCCAGGCAGTGGCGAATGGGGAACTCAGCGTGAAGCGCTGGCATTCGAACAAGCAGCTGTCGCCGCAGAAACTGAATTACAAGCTTTACTGGTGCGCGAAAAAGTTGAAGCCGCGCGCAGAGCGATGCTGCTGTATCCGCAACAATTAAGCTGGAATTGGTGGGATGACGTCACCGTAGAGATCCGTTTCTGGCTTCCGGCGGGTAGTTTTGCAACCAGCGTTGTCAGGGAACTTATCAACACAACAGGTGATTA cysDNC cysDNC cysDp 2876368 reverse cysD(2875421,2876329) cysC(2873387,2873992) rho-independent(2873234,2873284) 2873234-2876368 2876329-2876368 CTGATGGCAAGAAAATAGCGGTATTGCAAAGGAACGGTTA 2873234-2873387 AGACACCACCGGGTTTCCATGCCCGGTTCGTCAAAGTAACAGGATCAAATATGCGTAATAGCCATAACATTACACTAACAAATAACGACAGCCTTACTGAGGATGAAGAAACCACATGGTCACTGCCTGGTGCCGTGGTCGGTTTTATCTCCTG casABCDE12 ygbF ygbFp 2878915 reverse cas2(2878569,2878853) cas2(2878569,2878853) 2878569-2878915 2878853-2878915 ACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAA casABCDE12 casABCDE12 casAp 2884319 reverse casA(2882630,2884138) cas2(2878569,2878853) 2878569-2884319 2884138-2884319 ACAATTCAACACATCTTAATATATGTATAGGTTAATTGTATTAAACCAATGAATATATTTTTGCAGTGAATGTGATTATTGAATTAATTACGCCGTATTTTTTCTTTGTTTTTACCGATAACGGAAGTGTGCCGACGTATAGAAATGCAGGAGAAATGTCGGAGCATATGAAGGAGAACAAA cysJIH cysJIH cysJp 2891964 reverse cysJ(2890099,2891898) cysH(2887578,2888312) 2887578-2891964 2891898-2891964 TCTCTTCTGTTTTATGGGCGCTGACAGGGCGCAGAAACAGCTTTGCTTACTGGAACATAACGACGCA pyrG-eno eno enop4 2907968 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2907968 2907941-2907968 TTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop8 2907968 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2907968 2907941-2907968 TTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop6 2908018 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2908018 2907941-2908018 TAGAGCGGCAACGCGTACCCTGGGTACGCGTTGTTTGTCTGGAGTTTCAGTTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop7 2908152 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2908152 2907941-2908152 TCACCCGTGGTTCGTGGCTTGCCAGTTCCATCCGGAGTTTACTTCTACTCCACGTGATGGTCACCCGCTGTTTGCAGGCTTTGTGAAAGCCGCCAGCGAGTTCCAGAAACGTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGCAACGCGTACCCTGGGTACGCGTTGTTTGTCTGGAGTTTCAGTTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop5 2908152 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2908152 2907941-2908152 TCACCCGTGGTTCGTGGCTTGCCAGTTCCATCCGGAGTTTACTTCTACTCCACGTGATGGTCACCCGCTGTTTGCAGGCTTTGTGAAAGCCGCCAGCGAGTTCCAGAAACGTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGCAACGCGTACCCTGGGTACGCGTTGTTTGTCTGGAGTTTCAGTTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop1 2908674 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2908674 2907941-2908674 AGATGTTGAAACGCGCGGCGTTGAAATCCTTAAAGGTCTGGACGCAATCCTCGTACCTGGCGGTTTCGGCTATCGTGGCGTAGAAGGCATGATTACGACCGCGCGTTTTGCGCGTGAGAACAATATTCCTTATCTGGGCATTTGCCTGGGTATGCAGGTGGCGTTAATTGATTACGCTCGCCATGTTGCCAACATGGAGAACGCCAACTCTACGGAATTTGTGCCAGACTGTAAGTACCCGGTTGTGGCGCTGATTACCGAGTGGCGCGATGAAAACGGCAACGTTGAAGTTCGTAGCGAGAAGAGCGATCTCGGCGGTACCATGCGTCTCGGCGCACAGCAGTGCCAGTTGGTTGACGATAGCCTGGTTCGCCAGCTGTACAATGCGCCGACAATTGTTGAGCGTCATCGTCACCGTTACGAAGTCAACAACATGCTGTTGAAACAGATTGAAGATGCAGGTCTGCGCGTTGCGGGCCGTTCCGGGGATGATCAGTTGGTCGAGATCATCGAAGTTCCGAATCACCCGTGGTTCGTGGCTTGCCAGTTCCATCCGGAGTTTACTTCTACTCCACGTGATGGTCACCCGCTGTTTGCAGGCTTTGTGAAAGCCGCCAGCGAGTTCCAGAAACGTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGCAACGCGTACCCTGGGTACGCGTTGTTTGTCTGGAGTTTCAGTTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop2 2908702 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2908702 2907941-2908702 GCGTCAACATCAAACTGATCGATTCACAAGATGTTGAAACGCGCGGCGTTGAAATCCTTAAAGGTCTGGACGCAATCCTCGTACCTGGCGGTTTCGGCTATCGTGGCGTAGAAGGCATGATTACGACCGCGCGTTTTGCGCGTGAGAACAATATTCCTTATCTGGGCATTTGCCTGGGTATGCAGGTGGCGTTAATTGATTACGCTCGCCATGTTGCCAACATGGAGAACGCCAACTCTACGGAATTTGTGCCAGACTGTAAGTACCCGGTTGTGGCGCTGATTACCGAGTGGCGCGATGAAAACGGCAACGTTGAAGTTCGTAGCGAGAAGAGCGATCTCGGCGGTACCATGCGTCTCGGCGCACAGCAGTGCCAGTTGGTTGACGATAGCCTGGTTCGCCAGCTGTACAATGCGCCGACAATTGTTGAGCGTCATCGTCACCGTTACGAAGTCAACAACATGCTGTTGAAACAGATTGAAGATGCAGGTCTGCGCGTTGCGGGCCGTTCCGGGGATGATCAGTTGGTCGAGATCATCGAAGTTCCGAATCACCCGTGGTTCGTGGCTTGCCAGTTCCATCCGGAGTTTACTTCTACTCCACGTGATGGTCACCCGCTGTTTGCAGGCTTTGTGAAAGCCGCCAGCGAGTTCCAGAAACGTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGCAACGCGTACCCTGGGTACGCGTTGTTTGTCTGGAGTTTCAGTTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno eno enop3 2908846 reverse eno(2906643,2907941) eno(2906643,2907941) 2906643-2908846 2907941-2908846 CCGAATGGGAACAGGTTATCTTCGAAGAAGCGAACCCGGTAAGTGAAGTCACCATCGGTATGGTCGGCAAGTACATTGAACTGCCGGATGCTTATAAATCAGTGATCGAAGCACTGAAACACGGTGGGCTGAAGAATCGTGTCAGCGTCAACATCAAACTGATCGATTCACAAGATGTTGAAACGCGCGGCGTTGAAATCCTTAAAGGTCTGGACGCAATCCTCGTACCTGGCGGTTTCGGCTATCGTGGCGTAGAAGGCATGATTACGACCGCGCGTTTTGCGCGTGAGAACAATATTCCTTATCTGGGCATTTGCCTGGGTATGCAGGTGGCGTTAATTGATTACGCTCGCCATGTTGCCAACATGGAGAACGCCAACTCTACGGAATTTGTGCCAGACTGTAAGTACCCGGTTGTGGCGCTGATTACCGAGTGGCGCGATGAAAACGGCAACGTTGAAGTTCGTAGCGAGAAGAGCGATCTCGGCGGTACCATGCGTCTCGGCGCACAGCAGTGCCAGTTGGTTGACGATAGCCTGGTTCGCCAGCTGTACAATGCGCCGACAATTGTTGAGCGTCATCGTCACCGTTACGAAGTCAACAACATGCTGTTGAAACAGATTGAAGATGCAGGTCTGCGCGTTGCGGGCCGTTCCGGGGATGATCAGTTGGTCGAGATCATCGAAGTTCCGAATCACCCGTGGTTCGTGGCTTGCCAGTTCCATCCGGAGTTTACTTCTACTCCACGTGATGGTCACCCGCTGTTTGCAGGCTTTGTGAAAGCCGCCAGCGAGTTCCAGAAACGTCAGGCGAAGTAAGTAAAAAAGTTAGAGCGGCAACGCGTACCCTGGGTACGCGTTGTTTGTCTGGAGTTTCAGTTTAACTAGTGACTTGAGGAAAACCTAA pyrG-eno pyrG-eno pyrGp 2909713 reverse pyrG(2908029,2909666) eno(2906643,2907941) 2906643-2909713 2909666-2909713 GTCTTGGTTATTCCATCGTCTTTTCAACCTAACTTCTCAGGTTCAGCA pyrG-eno pyrG-eno pyrGp2 2909717 reverse pyrG(2908029,2909666) eno(2906643,2907941) 2906643-2909717 2909666-2909717 TCCCGTCTTGGTTATTCCATCGTCTTTTCAACCTAACTTCTCAGGTTCAGCA pyrG-eno pyrG-eno pyrGp1 2909797 reverse pyrG(2908029,2909666) eno(2906643,2907941) 2906643-2909797 2909666-2909797 CTCCTGATTTCAATAGTGCGCTGGCGAAGAGGAGGGATAATGAAAGTTTGTGGCACAGGTCATGTTCGGGTATACTGCTTTCCCGTCTTGGTTATTCCATCGTCTTTTCAACCTAACTTCTCAGGTTCAGCA relA-mazEFG mazEFG mazEp2 2911355 reverse mazE(2911091,2911339) mazG(2909894,2910685) 2909894-2911355 2911339-2911355 GTTTGAGGAAAGGGTTA relA-mazEFG mazEFG mazEp1 2911368 reverse mazE(2911091,2911339) mazG(2909894,2910685) 2909894-2911368 2911339-2911368 ACATATGATAGCGGTTTGAGGAAAGGGTTA relA-mazEFG relA relAp3 2913700 reverse relA(2911417,2913651) relA(2911417,2913651) 2911417-2913700 2913651-2913700 AGTTGCGATTTGCCGATTTCGGCAGGTCTGGTCCCTAAAGGAGAGGACGA relA-mazEFG relA-mazEF relAp1 2913829 reverse relA(2911417,2913651) mazF(2910756,2911091) 2910756-2913829 2913651-2913829 CTGCAACGCTGGCTCGGGATAGCGAAGCGTTATTAAAAGCAGGATATACCATTGCGCGACTGGCGATGCTGGATATGTTCCCACACACGGGACATCTGGAATCGATGGTACTTTTCTCGCGCGTTAAATAGTTGCGATTTGCCGATTTCGGCAGGTCTGGTCCCTAAAGGAGAGGACGA relA-mazEFG relA-mazEF relAp2 2914277 reverse relA(2911417,2913651) mazF(2910756,2911091) 2910756-2914277 2913651-2914277 GTCTCTGGTGAGATGCCCTGGTATGACTCAAACGGGTTGCGCTTAACTTTTAGCCCGCGCGATTTTATTCAGGTCAATGCGGGTGTGAACCAAAAAATGGTAGCGCGTGCGTTGGAATGGCTGGATGTGCAACCTGAAGATCGCGTACTGGATCTGTTCTGCGGTATGGGCAACTTTACACTGCCATTGGCGACACAAGCTGCCAGTGTGGTCGGTGTAGAAGGTGTTCCGGCGCTGGTGGAAAAAGGCCAGCAGAATGCGCGTCTTAATGGCTTACAGAATGTGACGTTTTATCACGAAAATCTTGAAGAAGATGTCACAAAGCAGCCGTGGGCGAAAAACGGCTTCGATAAAGTGTTGCTGGACCCGGCGCGAGCAGGTGCCGCAGGTGTTATGCAGCAAATTATAAAACTGGAACCTATTCGTATAGTTTATGTATCCTGTAACCCTGCAACGCTGGCTCGGGATAGCGAAGCGTTATTAAAAGCAGGATATACCATTGCGCGACTGGCGATGCTGGATATGTTCCCACACACGGGACATCTGGAATCGATGGTACTTTTCTCGCGCGTTAAATAGTTGCGATTTGCCGATTTCGGCAGGTCTGGTCCCTAAAGGAGAGGACGA relA-mazEFG relA relAp4 2914318 reverse relA(2911417,2913651) relA(2911417,2913651) 2911417-2914318 2913651-2914318 TGGATCTGTATCTCGCCCCCGATAGTGAGATACTCGAAACCGTCTCTGGTGAGATGCCCTGGTATGACTCAAACGGGTTGCGCTTAACTTTTAGCCCGCGCGATTTTATTCAGGTCAATGCGGGTGTGAACCAAAAAATGGTAGCGCGTGCGTTGGAATGGCTGGATGTGCAACCTGAAGATCGCGTACTGGATCTGTTCTGCGGTATGGGCAACTTTACACTGCCATTGGCGACACAAGCTGCCAGTGTGGTCGGTGTAGAAGGTGTTCCGGCGCTGGTGGAAAAAGGCCAGCAGAATGCGCGTCTTAATGGCTTACAGAATGTGACGTTTTATCACGAAAATCTTGAAGAAGATGTCACAAAGCAGCCGTGGGCGAAAAACGGCTTCGATAAAGTGTTGCTGGACCCGGCGCGAGCAGGTGCCGCAGGTGTTATGCAGCAAATTATAAAACTGGAACCTATTCGTATAGTTTATGTATCCTGTAACCCTGCAACGCTGGCTCGGGATAGCGAAGCGTTATTAAAAGCAGGATATACCATTGCGCGACTGGCGATGCTGGATATGTTCCCACACACGGGACATCTGGAATCGATGGTACTTTTCTCGCGCGTTAAATAGTTGCGATTTGCCGATTTCGGCAGGTCTGGTCCCTAAAGGAGAGGACGA rlmD rlmD rlmDp 2915043 reverse rlmD(2913699,2915000) rlmD(2913699,2915000) 2913699-2915043 2915000-2915043 GGGACAATTAAGGTCACACTGTTAAATTGAGAAAGTCTCGCCAA csrB csrB csrBp 2924524 reverse csrB(2924156,2924524) csrB(2924156,2924524) rho-independent(2924166,2924191) 2924166-2924524 2924524-2924524 G queF queF queFp 2925321 forward queF(2925348,2926196) queF(2925348,2926196) 2925321-2926196 2925321-2925348 AGTTTATCTGGTTTATGACGGTGAAACA fucAO fucO fucOp 2933223 reverse fucO(2931865,2933013) fucO(2931865,2933013) 2931865-2933223 2933013-2933223 GGGCTTATCGCTTGTGAGGTGAATCTGGAAAAAGCGTTATGGCTGGCGCATGAAGTTGAAGTGCTGGCGCAACTTTACCTGACGACCCTGGCGATTACGGACCCGGTGCCAGTGCTGAGCGATGAAGAGATTGCCGTAGTGCTGGAGAAATTCAAAACCTATGGGTTACGAATTGAAGAGTAATTTCGTAAAGCAACAAGGAGAAGGATGA fucAO fucAO fucAp 2933854 reverse fucA(2933041,2933688) fucO(2931865,2933013) 2931865-2933854 2933688-2933854 AACTTGCAGTTATTTACTGTGATTAGTTGAACCAGGTCACAAAATATAAGCTTGTGAATTTCTTTCTTGTTAATCAGGAAGAAGATGGTGGGTAATTAAACGGCTAATTCAATAGTGTGAAAGGAACAACATTATTGCCCTGTTTTGAATCAGAGAGAGGTAGCTAA fucPIKUR fucPIKUR fucPp 2934119 forward fucP(2934235,2935551) fucR(2939368,2940099) 2934119-2940099 2934119-2934235 ATGAGTTCATTTCAGACAGGCAAATATTCACTGATATGAAGCCCGAACTCGCTGGTTTTGCACTTTTGAAAACATAACCGATTACGTGCTTAAGCTTCTGAACCTAAGAGGATGCTA fucPIKUR fucU fucUp 2938837 forward fucU(2938888,2939310) fucU(2938888,2939310) 2938837-2939310 2938837-2938888 ACCGTTATTTCTACCCGCAAACTGAACCTGAATTTATAGAGGAAGTGTGAAA gcvA gcvA gcvAp 2942639 reverse gcvA(2941650,2942567) gcvA(2941650,2942567) 2941650-2942639 2942567-2942639 GATTAAAAAAACTAATAGGTTACATAGTGTGATCTAATTGTTAAATTCATTTAACATCAAAGTTTAATAGCCA gcvB gcvB gcvBp 2942696 forward gcvB(2942696,2942901) gcvB(2942696,2942901) 2942696-2942901 2942696-2942696 A metZWV metZWV metZp 2947382 forward metZ(2947387,2947463) metV(2947607,2947683) rho-independent(2947691,2947717) 2947382-2947717 2947382-2947387 ACGGAC 2947683-2947717 AATTATTGAACACCCTAACGGGTGTTTTTTTGTTT metZWV metZWV metZp 2947382 forward metZ(2947387,2947463) metV(2947607,2947683) rho-independent(2947736,2947756) 2947382-2947756 2947382-2947387 ACGGAC 2947683-2947756 AATTATTGAACACCCTAACGGGTGTTTTTTTGTTTCTGGTCTCCCATAAAAAAGCGCCATTCAGCGCCTTTTTA argA argA argAp 2949156 forward argA(2949242,2950573) argA(2949242,2950573) 2949156-2950573 2949156-2949242 CTCTCGCATAAAATTTACACTTGCACCCTGCGAAAAAACAGAATAAAAATACACTAATTTCGAATAATCATGCAAAGAGGTGTGCCG ptrA-recBD ptrA ptrAp 2959011 reverse ptrA(2955996,2958884) ptrA(2955996,2958884) 2955996-2959011 2958884-2959011 CCAGTCACGGACTGATGGTTATATAAACATAGGCTGACTCGTGCAGCACAAGATTAAATTCTGGCAGATGATTTGCGTTAACGTGTTGAATCTGGACAGAAAATTAAGTTGATTATGAGGTCCGTGAA ptrA-recBD ptrA-recBD ptrAp 2959011 reverse ptrA(2955996,2958884) recD(2950635,2952461) 2950635-2959011 2958884-2959011 CCAGTCACGGACTGATGGTTATATAAACATAGGCTGACTCGTGCAGCACAAGATTAAATTCTGGCAGATGATTTGCGTTAACGTGTTGAATCTGGACAGAAAATTAAGTTGATTATGAGGTCCGTGAA ppdAB-ygdB-ppdC-recC recC recCp 2962507 reverse recC(2959060,2962428) recC(2959060,2962428) 2959060-2962507 2962428-2962507 TACGCTAGTTTCACCCGGGGGCAGAGAAGGCGAGATGACCCGCCTGCATTGCCCGAATCGTCAGTAGTCAGGAGCCGCTA ppdAB-ygdB-ppdC-recC ppdAB-ygdB-ppdC-recC ppdAp 2964220 reverse ppdA(2963707,2964177) recC(2959060,2962428) 2959060-2964220 2964177-2964220 AACTGGCCCTCGTCTTTTTTTCTCCTCGCTCCATACTGCCGGCA lgt-thyA thyA thyAp 2965254 reverse thyA(2964361,2965155) thyA(2964361,2965155) rho-independent(2964320,2964339) 2964320-2965254 2965155-2965254 ATGGGGCAAATTCTTTCCATCCCGATGATTGTCGCGGGTGTGATCATGATGGTCTGGGCATATCGTCGCAGCCCACAGCAACACGTTTCCTGAGGAACCA 2964320-2964361 ATTACGAAACATCCTGCCAGAGCCGACGCCAGTGTGCGTCGG lgt-thyA lgt-thyA lgtp 2966121 reverse lgt(2965162,2966037) thyA(2964361,2965155) rho-independent(2964320,2964339) 2964320-2966121 2966037-2966121 GCACCTTTGGAGCGCCTGAAACCTGCGGCGCGCATTTCAATCGCTGTTCTCTTTCAGCGAAATAACAAGAACTTGTGGTGACAGA 2964320-2964361 ATTACGAAACATCCTGCCAGAGCCGACGCCAGTGTGCGTCGG lgt-thyA lgt lgtp 2966121 reverse lgt(2965162,2966037) lgt(2965162,2966037) rho-independent(2965066,2965095) 2965066-2966121 2966037-2966121 GCACCTTTGGAGCGCCTGAAACCTGCGGCGCGCATTTCAATCGCTGTTCTCTTTCAGCGAAATAACAAGAACTTGTGGTGACAGA 2965066-2965162 AGGAACCATGAAACAGTATTTAGAACTGATGCAAAAAGTGCTCGACGAAGGCACACAGAAAAACGACCGTACCGGAACCGGAACGCTTTCCATTTTT rppH-ptsP rppH-ptsP rppHp 2968993 reverse rppH(2968447,2968977) ptsP(2966188,2968434) 2966188-2968993 2968977-2968993 ATTTTGAGGTAGTCCGG omrA omrA omrAp 2976189 reverse omrA(2976102,2976189) omrA(2976102,2976189) 2976102-2976189 2976189-2976189 C omrB omrB omrBp 2976385 reverse omrB(2976304,2976385) omrB(2976304,2976385) 2976304-2976385 2976385-2976385 C galR galR galRp 2976569 forward galR(2976599,2977630) galR(2976599,2977630) 2976569-2977630 2976569-2976599 ATGTAAGCGTTTACCCACTAAGGTATTTTCA lysR lysR lysRp 2978950 forward lysR(2979021,2979956) lysR(2979021,2979956) 2978950-2979956 2978950-2979021 AATAAAAAATATCGATTTATGTCGAGTCTATGCAAAAATGATATGGATTACCGGATTGCGAGAGAGCGCTAA lysA lysA lysAp 2978951 reverse lysA(2977637,2978899) lysA(2977637,2978899) 2977637-2978951 2978899-2978951 TTCTTTTTATGATGTGGCGTAATCATAAAAAAGCACTTATCTGGAGTTTGTTA araE-ygeA araE araEp 2982208 reverse araE(2980764,2982182) araE(2980764,2982182) 2980764-2982208 2982182-2982208 GTCTTACTCTCTGCTGGCAGGAAAAAA araE-ygeA araE-ygeA araEp 2982208 reverse araE(2980764,2982182) ygeA(2979943,2980635) 2979943-2982208 2982182-2982208 GTCTTACTCTCTGCTGGCAGGAAAAAA ygeH ygeH ygeHp10 2991879 forward ygeH(2992094,2993470) ygeH(2992094,2993470) 2991879-2993470 2991879-2992094 ATTTTTCAATGCGTTAGAGAACAATCTACTTTATCAAAATTGAATAAGGCTATTTCAGATTACATCACTGAATTCCTAAGATAAATTAGTGAACACAACCATAGATATGTCAAATGTAATTTCCTGTAGCGTTAATGACACATAAATATGAATAGCCATAATTTCTATTGCTTAAGCAGGATGCAAGAAACCAATTTTTTCATAGAGGTTAACTAA glyU glyU glyUp 2999064 reverse glyU(2998984,2999057) glyU(2998984,2999057) 2998984-2999064 2999057-2999064 TCTCGAAG xdhABC xdhABC xdhAp1 3000257 forward xdhA(3000345,3002603) xdhC(3003489,3003968) 3000257-3003968 3000257-3000345 GACTAAATCTTTGCCATAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCA xdhABC xdhABC xdhAp2 3000265 forward xdhA(3000345,3002603) xdhC(3003489,3003968) 3000265-3003968 3000265-3000345 CTTTGCCATAAGAACCAAATGTTCAAATCGAGGGGATTTCTATGGAAGCGCGGGAAGCAACCGCTACGGGTGAATCATGCA ygeV ygeV ygeVp 3005847 reverse ygeV(3004008,3005786) ygeV(3004008,3005786) 3004008-3005847 3005786-3005847 GATCTGTGAACCATCAACGTCTTCAATGATCGACTTTTAAGTAAGTCTGGAAGGTAAAGCTA ygfK-ssnA ygfK-ssnA ygfKp 3015992 forward ygfK(3016060,3019158) ssnA(3019161,3020489) 3015992-3020489 3015992-3016060 CCCCCTAAACCACCGGATTTCTCAACACCGGTCACTCAATGATATCTGTATAAGCTAAGGAGAGGGTTA ygfK-ssnA ssnA ssnAp 3018950 forward ssnA(3019161,3020489) ssnA(3019161,3020489) rho-independent(3020500,3020522) 3018950-3020522 3018950-3019161 TGGCGCAAGACTTTGATAACAGCAGCAACCCAGGCTTCCTTGTGGAAGATTGCCGGGTACGAGTACGTCTGAATAACCAAAGCTGGGTGTTAAACATCGACAGCAAAGGTCAGTTTAACAACGTACCACCGGAGCTGAACGATATGTGCCGCATCATCAGCCATGTCCACCAGCATCATCATTATCTGCTGGGCCGCGTGGAGGTGTAATCA 3020489-3020522 AATGACAGATGCCCTCTTCCCGCAGGGAAGAGGG xerD-dsbC-recJ-prfB-lysS dsbC dsbCp 3038834 reverse dsbC(3038112,3038822) dsbC(3038112,3038822) 3038112-3038834 3038822-3038834 ACGGGAAGATTTA xerD-dsbC-recJ-prfB-lysS dsbC-recJ-prfB dsbCp2 3039633 reverse dsbC(3038112,3038822) prfB(3035184,3036282) 3035184-3039633 3038822-3039633 GGAGTGGTTGCATCACCGCGGGTTGACGCTGGCGACGGCGCAAAGTGACGATTTGCAGGCATTACTGGCAGAACGGCTGGAGGGCGGGTATAAAGCCACCAGCTCAGCGCGTTTGCTGAGTGCAGTGCGCCGATTGTTCCAGTATCTTTATCGCGAAAAGTTTCGTGAAGACGATCCCAGTGCGCATCTCGCTTCACCGAAATTGCCCCAGCGTTTGCCAAAAGATTTAAGCGAAGCGCAGGTCGAACGTTTATTACAGGCACCATTAATCGATCAGCCACTGGAGCTACGCGATAAAGCCATGCTTGAAGTGTTGTATGCTACCGGGCTGCGTGTCTCTGAACTGGTCGGACTGACAATGAGTGATATCAGCCTGCGTCAGGGCGTGGTACGGGTCATTGGTAAAGGCAACAAAGAGCGTCTGGTGCCGTTAGGTGAAGAGGCGGTTTACTGGCTGGAAACCTATCTGGAACATGGGCGTCCGTGGCTGCTGAATGGTGTGTCAATTGACGTGTTGTTTCCCAGCCAGCGTGCGCAGCAGATGACGCGACAGACCTTCTGGCACCGTATTAAACATTATGCTGTGCTGGCGGGTATCGACAGCGAAAAGCTGTCACCGCATGTGTTGCGTCACGCTTTTGCCACTCATTTATTAAATCATGGTGCGGATTTACGCGTGGTGCAGATGCTACTGGGCCACAGCGATCTCTCCACCACGCAAATTTATACGCATGTCGCTACCGAGCGTCTGCGGCAACTTCATCAACAGCATCACCCGCGGGCGTGATGTCTGAAAAGAACGGGAAGATTTA fldB fldB fldBp 3039822 forward fldB(3039855,3040376) fldB(3039855,3040376) 3039822-3040376 3039822-3039855 CAAAAGCCACAGCAGAATCGAGAAGCTTACGTTA xerD-dsbC-recJ-prfB-lysS xerD-dsbC-recJ xerDp 3039851 reverse xerD(3038847,3039743) recJ(3036373,3038106) 3036373-3039851 3039743-3039851 GTAAGCTTCTCGATTCTGCTGTGGCTTTTGCGGCTAGTGTATCAGAATCGCTTTAGTCACGGCACAATAAGGCATAATGGATCAAATGAGTGACCATAAGGGGCGCAAG xerD-dsbC-recJ-prfB-lysS xerD-dsbC-recJ xerDp2 3039851 reverse xerD(3038847,3039743) recJ(3036373,3038106) 3036373-3039851 3039743-3039851 GTAAGCTTCTCGATTCTGCTGTGGCTTTTGCGGCTAGTGTATCAGAATCGCTTTAGTCACGGCACAATAAGGCATAATGGATCAAATGAGTGACCATAAGGGGCGCAAG sdhE-ygfX sdhE-ygfX sdhEp 3041099 reverse sdhE(3040804,3041070) ygfX(3040416,3040823) 3040416-3041099 3041070-3041099 GTACTGGATTTTCGTGAGACAGGAAGAAGA ygfZ ygfZ ygfZp 3041282 forward ygfZ(3041313,3042293) ygfZ(3041313,3042293) 3041282-3042293 3041282-3041313 AATACGCCGTTAAGCAACTCAGGACTCTATTA gcvTHP gcvTHP gcvTp 3050772 reverse gcvT(3049573,3050667) gcvP(3046168,3049041) rho-independent(3046126,3046145) 3046126-3050772 3050667-3050772 AGAGAACGATTGCGTTGGGGACCGGGAGTGGCTCCGATGCTGGGTTTCGTGGTGATAATTTCACCATGAAAAAGTTGTCAGCCCCGCTTATTCAATGAGGACAAGA 3046126-3046168 ATTCACTGATTCGACTATTTTCTAAAGGCGCTTCGGCGCCTTT ygfB-pepP-ubiHI ygfB-pepP-ubiHI ygfBp 3055473 reverse ygfB(3054866,3055444) ubiI(3051115,3052317) rho-independent(3051048,3051072) 3051048-3055473 3055444-3055473 AATATTCCTCCCTTTGACGACGAATGCTTA 3051048-3051115 AAAATTTCTCCTCTGTTGTTTATTTGATACCCATCACACTTTCATCTCCCGGTTTTTTCGCCGGGAGA ssrS-fau ssrS-ygfA ssrSp2 3055759 forward ssrS(3055983,3056165) fau(3056241,3056789) 3055759-3056789 3055759-3055983 ACTGAACAGTTGGTCTTCATTGCCGCATTGAATATCAGCTATGAGTTAGCGCAAGAAAAAGCAAAGACTCGTGACTACGCGGCAAGTATGGAACAGCGTATTCGGATGCTGCAGCAGACCATAGAACAAGCGTTACTTGAACAAGGTCGCATCACCGAAAAAACTAACCAAAACTTTGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAA ssrS-fau ssrS ssrSp2 3055759 forward ssrS(3055983,3056165) ssrS(3055983,3056165) rho-dependent(3056235,3056283) 3055759-3056283 3055759-3055983 ACTGAACAGTTGGTCTTCATTGCCGCATTGAATATCAGCTATGAGTTAGCGCAAGAAAAAGCAAAGACTCGTGACTACGCGGCAAGTATGGAACAGCGTATTCGGATGCTGCAGCAGACCATAGAACAAGCGTTACTTGAACAAGGTCGCATCACCGAAAAAACTAACCAAAACTTTGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAA 3056165-3056283 CCCTTCTTATCTGGCACCAGCCATGACGCAACTACCAGAACTCCCACTGACATTATCCCGACAAGAAATCCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGC ssrS-fau ssrS ssrSp 3055759 forward ssrS(3055983,3056165) ssrS(3055983,3056165) rho-dependent(3056235,3056283) 3055759-3056283 3055759-3055983 ACTGAACAGTTGGTCTTCATTGCCGCATTGAATATCAGCTATGAGTTAGCGCAAGAAAAAGCAAAGACTCGTGACTACGCGGCAAGTATGGAACAGCGTATTCGGATGCTGCAGCAGACCATAGAACAAGCGTTACTTGAACAAGGTCGCATCACCGAAAAAACTAACCAAAACTTTGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAA 3056165-3056283 CCCTTCTTATCTGGCACCAGCCATGACGCAACTACCAGAACTCCCACTGACATTATCCCGACAAGAAATCCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGC ssrS-fau ssrS-ygfA ssrSp 3055759 forward ssrS(3055983,3056165) fau(3056241,3056789) 3055759-3056789 3055759-3055983 ACTGAACAGTTGGTCTTCATTGCCGCATTGAATATCAGCTATGAGTTAGCGCAAGAAAAAGCAAAGACTCGTGACTACGCGGCAAGTATGGAACAGCGTATTCGGATGCTGCAGCAGACCATAGAACAAGCGTTACTTGAACAAGGTCGCATCACCGAAAAAACTAACCAAAACTTTGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAA ssrS-fau ssrS-ygfA ssrSp1 3055974 forward ssrS(3055983,3056165) fau(3056241,3056789) 3055974-3056789 3055974-3055983 GAAGACAAAA ssrS-fau ssrS ssrSp1 3055974 forward ssrS(3055983,3056165) ssrS(3055983,3056165) rho-dependent(3056235,3056283) 3055974-3056283 3055974-3055983 GAAGACAAAA 3056165-3056283 CCCTTCTTATCTGGCACCAGCCATGACGCAACTACCAGAACTCCCACTGACATTATCCCGACAAGAAATCCGCAAAATGATTCGGCAACGTCGTCGTGCGTTAACGCCGGAACAACAGC sibC sibC sibCp 3056851 forward sibC(3056851,3056991) sibC(3056851,3056991) rho-independent(3056957,3056991) 3056851-3056991 3056851-3056851 A ibsC ibsC ibsCp 3057009 reverse ibsC(3056890,3056949) ibsC(3056890,3056949) 3056890-3057009 3056949-3057009 GCAGCATGGGGCTGTAACGGTAAAGCCCTCACCGAAGCGAGGGCTTGAAGGAGAAGGGTTA serA serA serAp1 3058456 reverse serA(3057178,3058410) serA(3057178,3058410) 3057178-3058456 3058410-3058456 CGGATGCAAATCCGCACACAACATTTCAAAAGACAGGATTGGGTAAA serA serA serAp2 3058549 reverse serA(3057178,3058410) serA(3057178,3058410) 3057178-3058549 3058410-3058549 TTCATCCAAGAATTACCTTTGCGTGATATTTCCTCAACATCGCGACGCAAACGTTCATATTGCCGCAATATTATTTTTTGATATGTTGAAAGGCGGATGCAAATCCGCACACAACATTTCAAAAGACAGGATTGGGTAAA rpiA rpiA rpiAp 3059353 reverse rpiA(3058666,3059325) rpiA(3058666,3059325) rho-independent(3058644,3058660) 3058644-3059353 3059325-3059353 GAAATTTCATACCACAGGCGAAACGATCA 3058644-3058666 ATCTGACGGGGGAACCTCCCCCG argP argP argPp 3059730 forward argP(3059753,3060646) argP(3059753,3060646) rho-independent(3060660,3060680) 3059730-3060680 3059730-3059753 TTTACCAGGAGCAGACAACAGCAA 3060646-3060680 ATCCATCAAATAATGCCTGATAGCACATATCAGGC yggE yggE yggEp1 3068126 reverse yggE(3067340,3068080) yggE(3067340,3068080) 3067340-3068126 3068080-3068126 AGAGGTCCTGAATTTTGGGCAAGTCAATTAACACGGAGAGACTAACG yggE yggE yggEp2 3068185 reverse yggE(3067340,3068080) yggE(3067340,3068080) 3067340-3068185 3068080-3068185 CTTGTTCAGTTAGGCGCTATCTGATGGAAAAATAAAACAGAGGCGCTAAGCTTGCCTCCAGAGGTCCTGAATTTTGGGCAAGTCAATTAACACGGAGAGACTAACG argO argO argOp 3068836 reverse argO(3068173,3068808) argO(3068173,3068808) 3068173-3068836 3068808-3068836 ATCAGATACTTAATTCGGAATATCCAACG mscS mscS mscSp 3069871 reverse mscS(3068947,3069807) mscS(3068947,3069807) 3068947-3069871 3069807-3069871 ACTGCCCGTCATAAGGCGGCGGAGTGTATTTCTCCATTTTGAGTCAGTTGAAAAGGAATATTGAA epd-pgk-fbaA pgk pgkp2 3072648 reverse pgk(3071459,3072622) pgk(3071459,3072622) rho-independent(3071431,3071450) 3071431-3072648 3072622-3072648 TTTTAGAATCAACGAGAGGATTCACCA 3071431-3071459 AAAAATCACAGGGCAGGGAAACCTGCCCT epd-pgk-fbaA pgk-fbaA pgkp2 3072648 reverse pgk(3071459,3072622) fbaA(3070165,3071244) 3070165-3072648 3072622-3072648 TTTTAGAATCAACGAGAGGATTCACCA epd-pgk-fbaA pgk pgkp3 3072735 reverse pgk(3071459,3072622) pgk(3071459,3072622) rho-independent(3071431,3071450) 3071431-3072735 3072622-3072735 ATGGGGCTTTGCTAACCGAATGCTCGACACGACGTTAGCTATGGCTACTGTTGCTTTCAGGTAAGACGCAAGCAGCGTCTGCAAAACTTTTAGAATCAACGAGAGGATTCACCA 3071431-3071459 AAAAATCACAGGGCAGGGAAACCTGCCCT epd-pgk-fbaA pgk-fbaA pgkp3 3072735 reverse pgk(3071459,3072622) fbaA(3070165,3071244) 3070165-3072735 3072622-3072735 ATGGGGCTTTGCTAACCGAATGCTCGACACGACGTTAGCTATGGCTACTGTTGCTTTCAGGTAAGACGCAAGCAGCGTCTGCAAAACTTTTAGAATCAACGAGAGGATTCACCA epd-pgk-fbaA pgk-fbaA pgkp1 3072857 reverse pgk(3071459,3072622) fbaA(3070165,3071244) 3070165-3072857 3072622-3072857 ACGGAATTGCCGTTGGTCTCTGTAGATTTTAACCACGATCCGCACAGTGCCATTGTCGATGGCACCCAAACCCGGGTCAGTGGCGCACACCTGATCAAAACGTTGGTCTGGTGCGATAACGAATGGGGCTTTGCTAACCGAATGCTCGACACGACGTTAGCTATGGCTACTGTTGCTTTCAGGTAAGACGCAAGCAGCGTCTGCAAAACTTTTAGAATCAACGAGAGGATTCACCA epd-pgk-fbaA pgk pgkp1 3072857 reverse pgk(3071459,3072622) pgk(3071459,3072622) rho-independent(3071431,3071450) 3071431-3072857 3072622-3072857 ACGGAATTGCCGTTGGTCTCTGTAGATTTTAACCACGATCCGCACAGTGCCATTGTCGATGGCACCCAAACCCGGGTCAGTGGCGCACACCTGATCAAAACGTTGGTCTGGTGCGATAACGAATGGGGCTTTGCTAACCGAATGCTCGACACGACGTTAGCTATGGCTACTGTTGCTTTCAGGTAAGACGCAAGCAGCGTCTGCAAAACTTTTAGAATCAACGAGAGGATTCACCA 3071431-3071459 AAAAATCACAGGGCAGGGAAACCTGCCCT epd-pgk-fbaA epd-pgk epdp 3073823 reverse epd(3072672,3073691) pgk(3071459,3072622) rho-independent(3071431,3071450) 3071431-3073823 3073691-3073823 AGCGTTTCAGTCGATTAAATGTTCGACAATTAACCAATCAGTCGCAGTTTGCGACAGGTAAGGTTTCCCCGGACGATTTGCTGGATTACTCTGTCTGGCAAATTTGCTCAGGGAAAACCTTGCAGGAGATCTA 3071431-3071459 AAAAATCACAGGGCAGGGAAACCTGCCCT epd-pgk-fbaA epd-pgk-fbaA epdp 3073823 reverse epd(3072672,3073691) fbaA(3070165,3071244) 3070165-3073823 3073691-3073823 AGCGTTTCAGTCGATTAAATGTTCGACAATTAACCAATCAGTCGCAGTTTGCGACAGGTAAGGTTTCCCCGGACGATTTGCTGGATTACTCTGTCTGGCAAATTTGCTCAGGGAAAACCTTGCAGGAGATCTA epd-pgk-fbaA epd-pgk-fbaA epdp2 3073823 reverse epd(3072672,3073691) fbaA(3070165,3071244) 3070165-3073823 3073691-3073823 AGCGTTTCAGTCGATTAAATGTTCGACAATTAACCAATCAGTCGCAGTTTGCGACAGGTAAGGTTTCCCCGGACGATTTGCTGGATTACTCTGTCTGGCAAATTTGCTCAGGGAAAACCTTGCAGGAGATCTA epd-pgk-fbaA epd-pgk epdp2 3073823 reverse epd(3072672,3073691) pgk(3071459,3072622) rho-independent(3071431,3071450) 3071431-3073823 3073691-3073823 AGCGTTTCAGTCGATTAAATGTTCGACAATTAACCAATCAGTCGCAGTTTGCGACAGGTAAGGTTTCCCCGGACGATTTGCTGGATTACTCTGTCTGGCAAATTTGCTCAGGGAAAACCTTGCAGGAGATCTA 3071431-3071459 AAAAATCACAGGGCAGGGAAACCTGCCCT tktA tktA tktAp 3081707 reverse tktA(3079644,3081635) tktA(3079644,3081635) 3079644-3081707 3081635-3081707 CCGGCGTAGCCCAAAACGCGCTGTCGTCAAGTCGTTAAGGGCGTGCCCTTCATCATCCGATCTGGAGTCAAAA loiP yggG loiPp 3081892 forward loiP(3081913,3082671) loiP(3081913,3082671) 3081892-3082671 3081892-3081913 ACCTTGTGCGGAAGAGAAAACA speAB speB speBp 3083946 reverse speB(3082877,3083797) speB(3082877,3083797) 3082877-3083946 3083797-3083946 GAAGATGAGTAAGTCCTGTGTTACTTGAATCCGCTTAATTTAGCGGTGATAATCCGCCACAATTTATTGTGACAAATCCAACCCTTCCTCGTCGGGCCTAACGACGCGGAAGGGTTTTTTTATATCGACTTTGTAATAGGAGTCCATCCA speAB speAB speAp 3086048 reverse speA(3083935,3085911) speB(3082877,3083797) 3082877-3086048 3085911-3086048 AAAAAGAAACCGGTTGCGCAGTTGGAGCGTCAGCATTCACTGCTGGAAAATCCATGTGCTTATGGGTTGTTATCGCAGTTCCAGGCTGCGATAGTCGTTAACTGTTTTACACTTAATAAAATAATTTGAGGTTCGCTA metK metK metKp 3086577 forward metK(3086706,3087860) metK(3086706,3087860) 3086577-3087860 3086577-3086706 ATCCATCCATACCGATTAACACTCAGACTGCCAGTGTTTTTAACCTGCAGAGTCGTGGTAGGATCCGCTACCACAGAAAATCCACACAACAGTTTGAGCTAACCAAATTCTCTTTAGGTGATATTAAATA metK metK metKp2 3086577 forward metK(3086706,3087860) metK(3086706,3087860) 3086577-3087860 3086577-3086706 ATCCATCCATACCGATTAACACTCAGACTGCCAGTGTTTTTAACCTGCAGAGTCGTGGTAGGATCCGCTACCACAGAAAATCCACACAACAGTTTGAGCTAACCAAATTCTCTTTAGGTGATATTAAATA galP galP galPp 3088255 forward galP(3088284,3089678) galP(3088284,3089678) 3088255-3089678 3088255-3088284 AATAAAAAATAACCATATTGGAGGGCATCA endA endA endAp2 3090275 forward endA(3090347,3091054) endA(3090347,3091054) rho-independent(3091103,3091123) 3090275-3091123 3090275-3090347 TCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGA 3091054-3091123 ACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGG endA endA endAp2 3090275 forward endA(3090347,3091054) endA(3090347,3091054) rho-independent(3091089,3091112) 3090275-3091112 3090275-3090347 TCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGA 3091054-3091112 ACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGG endA endA endAp1 3090327 forward endA(3090347,3091054) endA(3090347,3091054) rho-independent(3091103,3091123) 3090327-3091123 3090327-3090347 GTTTTAACACGGAGTAAGTGA 3091054-3091123 ACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGG endA endA endAp1 3090327 forward endA(3090347,3091054) endA(3090347,3091054) rho-independent(3091089,3091112) 3090327-3091112 3090327-3090347 GTTTTAACACGGAGTAAGTGA 3091054-3091112 ACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGG yggSTU-rdgB-hemW rdgB-yggW rdgBp 3096620 forward rdgB(3096681,3097274) hemW(3097267,3098403) 3096620-3098403 3096620-3096681 AAAATCATTAATCCGCAACAAATCCCGCCAGAAATCGCGGCGTTAATTAATTAGGTATCCTA ansB ansB ansBp2 3100751 reverse ansB(3099682,3100728) ansB(3099682,3100728) rho-independent(3099654,3099674) 3099654-3100751 3100728-3100751 GTTCACGTAACTGGAGGAATGAAA 3099654-3099682 ATCGCCTCGCCCCGGTATCGTGCCGGGGC ansB ansB ansBp1 3100790 reverse ansB(3099682,3100728) ansB(3099682,3100728) rho-independent(3099654,3099674) 3099654-3100790 3100728-3100790 GTCAAATTTCCCATACAGAGCTAAGGGATAATGCGTAGCGTTCACGTAACTGGAGGAATGAAA 3099654-3099682 ATCGCCTCGCCCCGGTATCGTGCCGGGGC yggN yggN yggNp2b 3101640 reverse yggN(3100904,3101623) yggN(3100904,3101623) 3100904-3101640 3101623-3101640 TTTCTTGAGGGAAGACTA yggN yggN yggNp2 3101744 reverse yggN(3100904,3101623) yggN(3100904,3101623) 3100904-3101744 3101623-3101744 AAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATCAATCTGGGGCCAGCAAATGCTGGCCTGATTTTTTCTTGAGGGAAGACTA yggN yggN yggNp1 3101798 reverse yggN(3100904,3101623) yggN(3100904,3101623) 3100904-3101798 3101623-3101798 ACGGGCGATGACAAATGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTGGAAAGATGCACGATCGAGTAGGCGGGATAAGGTGTTTACGCCGCATCCGGCATGGAAAACGCGTACTTTGTTATCAATCTGGGGCCAGCAAATGCTGGCCTGATTTTTTCTTGAGGGAAGACTA mutY-yggX-mltC-nupG mutY-yggX-mltC-nupG mutYp2 3102911 forward mutY(3103013,3104065) nupG(3105714,3106970) 3102911-3106970 3102911-3103013 CGGATGCAAGCATGATAAGGCCGTGGCTGCGGAAAGTTCCGGTTTACACCCTGCCGTCGCTGTGCTGCAATCTTGCCCCCAACAACAGTGAATTCGGTGACCA mutY-yggX-mltC-nupG mutY-yggX mutYp2 3102911 forward mutY(3103013,3104065) yggX(3104093,3104368) 3102911-3104368 3102911-3103013 CGGATGCAAGCATGATAAGGCCGTGGCTGCGGAAAGTTCCGGTTTACACCCTGCCGTCGCTGTGCTGCAATCTTGCCCCCAACAACAGTGAATTCGGTGACCA mutY-yggX-mltC-nupG mutY-yggX-mltC mutYp2 3102911 forward mutY(3103013,3104065) mltC(3104433,3105512) 3102911-3105512 3102911-3103013 CGGATGCAAGCATGATAAGGCCGTGGCTGCGGAAAGTTCCGGTTTACACCCTGCCGTCGCTGTGCTGCAATCTTGCCCCCAACAACAGTGAATTCGGTGACCA mutY-yggX-mltC-nupG mutY-yggX-mltC-nupG mutYp1 3102988 forward mutY(3103013,3104065) nupG(3105714,3106970) 3102988-3106970 3102988-3103013 CCCAACAACAGTGAATTCGGTGACCA mutY-yggX-mltC-nupG mutY-yggX mutYp1 3102988 forward mutY(3103013,3104065) yggX(3104093,3104368) 3102988-3104368 3102988-3103013 CCCAACAACAGTGAATTCGGTGACCA mutY-yggX-mltC-nupG mutY-yggX-mltC mutYp1 3102988 forward mutY(3103013,3104065) mltC(3104433,3105512) 3102988-3105512 3102988-3103013 CCCAACAACAGTGAATTCGGTGACCA mutY-yggX-mltC-nupG yggX-mltC-nupG yggXp 3103993 forward yggX(3104093,3104368) nupG(3105714,3106970) 3103993-3106970 3103993-3104093 ACCGCCGTCAGTTGGCCTAGCGGCTCCCGTGGAGCGTTTGTTACAGCAGTTACGCACTGGCGCGCCGGTTTAGCGCGTGAGTCGATAAAGAGGATGATTTA mutY-yggX-mltC-nupG yggX yggXp 3103993 forward yggX(3104093,3104368) yggX(3104093,3104368) 3103993-3104368 3103993-3104093 ACCGCCGTCAGTTGGCCTAGCGGCTCCCGTGGAGCGTTTGTTACAGCAGTTACGCACTGGCGCGCCGGTTTAGCGCGTGAGTCGATAAAGAGGATGATTTA mutY-yggX-mltC-nupG yggX-mltC yggXp 3103993 forward yggX(3104093,3104368) mltC(3104433,3105512) 3103993-3105512 3103993-3104093 ACCGCCGTCAGTTGGCCTAGCGGCTCCCGTGGAGCGTTTGTTACAGCAGTTACGCACTGGCGCGCCGGTTTAGCGCGTGAGTCGATAAAGAGGATGATTTA mutY-yggX-mltC-nupG nupG nupGp 3105651 forward nupG(3105714,3106970) nupG(3105714,3106970) 3105651-3106970 3105651-3105714 ATCTCGCACGGTCAAATGTGCTTTTTCAAACACTCATCCGCATCACGATGTGAGGAAATTAACA speC speC speCp 3109175 reverse speC(3107020,3109155) speC(3107020,3109155) 3107020-3109175 3109155-3109175 CCCGAAACGGGTTTGCGCTTA pheV pheV pheVp 3110365 forward pheV(3110366,3110441) pheV(3110366,3110441) rho-independent(3110445,3110477) 3110365-3110477 3110365-3110366 TG 3110441-3110477 ACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTT yghF yghF yghFp 3112899 reverse yghF(3112054,3113049) yghF(3112054,3113049) 3112054-3112899 3113049-3112899 glcDEFGBA glcDEFGBA glcDp 3128076 reverse glcD(3126522,3128021) glcA(3119597,3121279) 3119597-3128076 3128021-3128076 AGAAGCAGCGCGCAAAAATCAGCTGCCACACAACACAACAAAGCGAAGCCTACTCA glcC glcC glcCp 3128206 forward glcC(3128272,3129036) glcC(3128272,3129036) 3128206-3129036 3128206-3128272 CGTGATGTGCGTGTTTTGCGAGTTAAGAACAGAAAAATTGGTCCTACCTGTGCACGAGGTCCGGGAA pitB pitB pitBp 3136403 reverse pitB(3134872,3136371) pitB(3134872,3136371) 3134872-3136403 3136371-3136403 GTTCGTAAATTCAAAATGGCGTAATCTAATATA gss gss gssp 3138610 reverse gss(3136663,3138522) gss(3136663,3138522) 3136663-3138610 3138522-3138610 GACCTCTGTCCGGTTAATGTCGCTGAGCAGGTAATCAGAGCACAACAATTACGCCAACTGCTTAGGTTGTATTGTTAAAGGTAAAGTGA yghU yghU yghUp 3138700 forward yghU(3138727,3139593) yghU(3138727,3139593) 3138700-3139593 3138700-3138727 ACACTACCACTCAGAAGGCAACTCACTA hybOABCDEFG hybOABCDEFG hybOp1 3146363 reverse hybO(3145143,3146261) hybG(3139716,3139964) 3139716-3146363 3146261-3146363 GATAACCATAATAAATGTGTGGTAAATGGCGCATCGATCGCATTATTGATTTTGCGATTGAGGCAAAATATATGCCAGGTCTTCGCAACGGAATAACTATAAA exbBD exbD exbDp 3151390 reverse exbD(3150818,3151243) exbD(3150818,3151243) rho-independent(3150552,3150576) 3150552-3151390 3151243-3151390 GCACGCCAGATTGGCGGCTTTAAAGCGATGCTGGGTGATGTTGCAGCGCAGGTATTGTTGCTGCAAAGCCGTGACCTGGATCTGGAAGCCAGCGCCGCTGCGCATCCGGTTCGTGTCGCACAAAAATTACGCGCAGGATAATATCCGA 3150552-3150818 AAGTAGAATTGCCTGATGCGCTACGCTCATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCGTGCGTTTGTAGGCCGGATAAGGCGTTCACGACGCATCCGGCATTAGGTGCTCAATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCA exbBD exbBD exbBp 3152014 reverse exbB(3151250,3151984) exbD(3150818,3151243) rho-independent(3150552,3150576) 3150552-3152014 3151984-3152014 ATTTTGTGACTTGCGTCCTGGAGATACACAG 3150552-3150818 AAGTAGAATTGCCTGATGCGCTACGCTCATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCGTGCGTTTGTAGGCCGGATAAGGCGTTCACGACGCATCCGGCATTAGGTGCTCAATGCCTGATGCGCTACGCTTATCAGGCCTACAAAATCTATTGCAACATGTTGAATCTTCATGCGTTTGTAGGCGGATAAGGCGTTTTCGCCACATCAGGTAAGAGTGAATTCACAATGATGCCCGGTTGCTTTTCACAACCGGGCA metC metC metCp 3152075 forward metC(3152236,3153423) metC(3152236,3153423) 3152075-3153423 3152075-3152236 ACTGCCGTACCTTTGCTTTCTTTTCCTTGCGTTTACGCAGTAAAAAAGTCACCAGCACGCCATTTGCGAAAATTTTCTGCTTTATGCCAATTCTTCAGGATGCGCCCGCGAATATTCATGCTAGTTTAGACATCCAGACGTATAAAAACAGGAATCCCGACA yghB yghB yghBp 3153529 forward yghB(3153563,3154222) yghB(3153563,3154222) 3153529-3154222 3153529-3153563 ATAAAGGCTTAAACGCTGTTCCACAGGAAAGTCCA yqhD-dkgA yqhD-dkgA yqhDp 3155302 forward yqhD(3155355,3156518) dkgA(3156623,3157450) 3155302-3157450 3155302-3155355 CATCAGGCAGATCGTTCTCTGCCCTCATATTGGCCCAGCAAAGGGAGCAAGTAA yqhD-dkgA dkgAp 3156571 forward dkgA(3156623,3157450) dkgA(3156623,3157450) 3156571-3157450 3156571-3156623 CACAACACCTCACCGGAGCCTGCTCCGGTGAGTTCATATAAAGGAGGAACGTA yqhG yqhG yqhGp 3157545 forward yqhG(3157650,3158576) yqhG(3157650,3158576) 3157545-3158576 3157545-3157650 GTTCAGGAATGCCAAATATAAGGACATCATCATGCAGAGCCGGAAGCTCTTAAAAGAACAACTCATCTATATCCGGGATAAACGCAACGGAGAGGTGAAAAACAGA mqsRA mqsA mqsAp1 3168286 reverse mqsA(3167851,3168246) mqsA(3167851,3168246) 3167851-3168286 3168246-3168286 ATTCATGACGTACTGATCGTCTCGTTTAAGGAGAAGTAATA mqsRA mqsA mqsAp2 3168397 reverse mqsA(3167851,3168246) mqsA(3167851,3168246) 3167851-3168397 3168246-3168397 TCAGAGAGCGACTTTTATAAAAGCATGACCACCTACTCTGATCATACTATCTGGCAGGATGTTTACAGACCCAGGCTTGTTACAGGCCAGGTTTATCTTAAAATTACGGTAATTCATGACGTACTGATCGTCTCGTTTAAGGAGAAGTAATA mqsRA mqsRA mqsRp2 3168562 reverse mqsR(3168248,3168544) mqsA(3167851,3168246) 3167851-3168562 3168544-3168562 AACAGGGAGGCGGGGGTTA mqsRA mqsRA mqsRp1 3168653 reverse mqsR(3168248,3168544) mqsA(3167851,3168246) 3167851-3168653 3168544-3168653 CGTTTTGTGTGGTCACTATCTCCGTACATCTAACTAACCTTTTAGGTGCTTTTTCATTGCTGTAATTAACCTTTTAGGTTATAACTAAAGTAACAGGGAGGCGGGGGTTA qseBC qseBC qseBp2 3169749 forward qseB(3169828,3170487) qseC(3170484,3171833) 3169749-3171833 3169749-3169828 AAATAAAATTTAGTGCTGTACAGAGCGCGTTACAACACGGTTTACTGGCAGCAAATACGGTTATCGCAGGGATGAAAAAA qseBC qseBC qseBp1 3169801 forward qseB(3169828,3170487) qseC(3170484,3171833) 3169801-3171833 3169801-3169828 AAATACGGTTATCGCAGGGATGAAAAAA ygiZ ygiZ ygiZp 3172323 reverse ygiZ(3171879,3172211) ygiZ(3171879,3172211) 3171879-3172323 3172211-3172323 TTTGGTTCGGTTTTTTTGGGGATTGAAAATATGGCTTTGAATAAGTAAAAGATGAAAGTATCAACGTGTCATGTTGATAATTATAAATGGATTTTTATGAGCGTACTGATATA tolC-ygiBC tolC-ygiBC tolCp1 3178004 forward tolC(3178115,3179596) ygiC(3180421,3181581) 3178004-3181581 3178004-3178115 AACGCCCTATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACTGCTTCACCACAAGGAATGCAAA tolC-ygiBC tolC-ygiBC tolCp2 3178012 forward tolC(3178115,3179596) ygiC(3180421,3181581) 3178012-3181581 3178012-3178115 ATGGCACGTAACGCCAACCTTTTGCGGTAGCGGCTTCTGCTAGAATCCGCAATAATTTTACAGTTTGATCGCGCTAAATACTGCTTCACCACAAGGAATGCAAA tolC-ygiBC tolC-ygiBC tolCp3 3178062 forward tolC(3178115,3179596) ygiC(3180421,3181581) 3178062-3181581 3178062-3178115 AATAATTTTACAGTTTGATCGCGCTAAATACTGCTTCACCACAAGGAATGCAAA tolC-ygiBC tolC-ygiBC tolCp4 3178074 forward tolC(3178115,3179596) ygiC(3180421,3181581) 3178074-3181581 3178074-3178115 GTTTGATCGCGCTAAATACTGCTTCACCACAAGGAATGCAAA zupT zupT zupTp 3182433 forward zupT(3182550,3183323) zupT(3182550,3183323) 3182433-3183323 3182433-3182550 ATTTTGATATCCTCACAATACGCTTGTTCGGCGGAGTAAGAACCCGGATAACAATGATGATGATCATCAGTTATTTTGACGATCTGCCTGAAGGTGAAGATTTATAAGGAGTTGTCGA sroG-ribB sroG-ribB ribBp 3184718 reverse sroG(3184570,3184718) ribB(3183813,3184466) rho-dependent(3184478,3184520) 3184478-3184718 3184718-3184718 G insC5CD5D5-yqiHIG insC-5p 3186040 (3184570,3184718) yqiG(,) - glgS glgS glgSp2 3192002 reverse glgS(3191739,3191939) glgS(3191739,3191939) rho-independent(3191716,3191735) 3191716-3192002 3191939-3192002 GAATACTGAAATCAGAAAAAGCATATGGCCTTAAAAGGTATGCGATAACCGGAGGATGTGCTTA 3191716-3191739 ATATAACGGGCCTGATGGCCCGTT glgS glgS glgSp1 3192012 reverse glgS(3191739,3191939) glgS(3191739,3191939) rho-independent(3191716,3191735) 3191716-3192012 3191939-3192012 ACTGATTGGGGAATACTGAAATCAGAAAAAGCATATGGCCTTAAAAGGTATGCGATAACCGGAGGATGTGCTTA 3191716-3191739 ATATAACGGGCCTGATGGCCCGTT ibsD ibsD ibsDp 3194701 forward ibsD(3194766,3194825) ibsD(3194766,3194825) 3194701-3194825 3194701-3194766 GTCAGCAGGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAAAGGGTTA sibD sibD sibDp 3194865 reverse sibD(3194721,3194865) sibD(3194721,3194865) 3194721-3194865 3194865-3194865 A sibE sibE sibEp 3195240 reverse sibE(3195097,3195240) sibE(3195097,3195240) 3195097-3195240 3195240-3195240 A ygiM-cca htrG-cca ygiMp2 3201042 forward ygiM(3201207,3201827) cca(3201891,3203129) 3201042-3203129 3201042-3201207 GTATTTTGCGCCAAATTGCCATGCAACGGGCAATTTGACGGGCGTAAAAGTTTGAAGCAGTGGCAAGACCTGACACAGAGGATTCCGATTGATGTCGAATGCTTTGCGTAGCGACACTGATGCCACTACTATCGTTCCACTTTCCATGACAATAACGACAGCCTGA ygiM-cca ygiM ygiMp1 3201104 forward ygiM(3201207,3201827) ygiM(3201207,3201827) 3201104-3201827 3201104-3201207 GCAAGACCTGACACAGAGGATTCCGATTGATGTCGAATGCTTTGCGTAGCGACACTGATGCCACTACTATCGTTCCACTTTCCATGACAATAACGACAGCCTGA bacA bacA bacAp 3204175 reverse bacA(3203310,3204131) bacA(3203310,3204131) 3203310-3204175 3204131-3204175 TAGTTCGGACAAGCGGTACATTTTAATAATTTAGGGGTTTATTGA ttdR ttdR ttdRp 3206380 reverse ttdR(3205324,3206256) ttdR(3205324,3206256) 3205324-3206380 3206256-3206380 CCGTGAATATGTAATTAACAGTTCGTGAATCAACGCGAAAATAAGAATGAATATTGCGCCAGAGCAGGGAATGGCAATGTTTTGCGAAATACACTGCGCTTATCACAACTGCGGATAATTAACGA ttdABT ttdABT ttdAp 3206424 forward ttdA(3206463,3207374) ttdT(3208024,3209487) 3206424-3209487 3206424-3206463 GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCA rpsU-dnaG-rpoD rpsU-dnaG-rpoD rpsUp1 3210646 forward rpsU(3210781,3210996) rpoD(3213047,3214888) rho-independent(3214943,3214962) 3210646-3214962 3210646-3210781 CTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACA 3214888-3214962 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCG rpsU-dnaG-rpoD rpsU rpsUp1 3210646 forward rpsU(3210781,3210996) rpsU(3210781,3210996) rho-independent(3211042,3211072) 3210646-3211072 3210646-3210781 CTTATAAAAGTCCCTTTCAAAAAAGGCCGCGGTGCTTTACAAAGCAGCAGCAATTGCAGTAAAATTCCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACA 3210996-3211072 ATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTT rpsU-dnaG-rpoD rpsU-dnaG-rpoD rpsUp2 3210712 forward rpsU(3210781,3210996) rpoD(3213047,3214888) rho-independent(3214943,3214962) 3210712-3214962 3210712-3210781 CCGCACCATTTTGAAATAAGCTGGCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACA 3214888-3214962 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCG rpsU-dnaG-rpoD rpsU-dnaG-rpoD rpsUp3 3210735 forward rpsU(3210781,3210996) rpoD(3213047,3214888) rho-independent(3214943,3214962) 3210735-3214962 3210735-3210781 GCGTTGATGCCAGCGGCAAACCGAATTAATCAAAGGTGAGAGGCACA 3214888-3214962 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCG rpsU-dnaG-rpoD rpoD rpoDp1 3212473 forward rpoD(3213047,3214888) rpoD(3213047,3214888) rho-independent(3214943,3214962) 3212473-3214962 3212473-3213047 GGTTGCTGGTGCAAAATCCAGAATTAGCGACGTTGGTCCCGCCGCTTGAGAATCTGGATGAAAATAAGCTCCCTGGACTTGGCTTATTCAGAGAACTGGTCAACACTTGTCTCTCCCAGCCAGGTCTGACCACCGGGCAACTTTTAGAGCACTATCGTGGTACAAATAATGCTGCCACCCTTGAAAAACTGTCGATGTGGGACGATATAGCAGATAAGAATATTGCTGAGCAAACCTTCACCGACTCACTCAACCATATGTTTGATTCGCTGCTTGAACTGCGCCAGGAAGAGTTAATCGCTCGTGAGCGCACGCATGGTTTAAGCAACGAAGAACGCCTGGAGCTCTGGACATTAAACCAGGAGCTGGCGAAAAAGTGATTTAACGGCTTAAGTGCCGAAGAGCGATCGGGAAGCCCCCGACAGCCGCACTGAGAGGCAGCGGCAAATATATAAGTACGCCCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTA 3214888-3214962 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCG rpsU-dnaG-rpoD rpoD rpoDp2 3212637 forward rpoD(3213047,3214888) rpoD(3213047,3214888) rho-independent(3214943,3214962) 3212637-3214962 3212637-3213047 AATAATGCTGCCACCCTTGAAAAACTGTCGATGTGGGACGATATAGCAGATAAGAATATTGCTGAGCAAACCTTCACCGACTCACTCAACCATATGTTTGATTCGCTGCTTGAACTGCGCCAGGAAGAGTTAATCGCTCGTGAGCGCACGCATGGTTTAAGCAACGAAGAACGCCTGGAGCTCTGGACATTAAACCAGGAGCTGGCGAAAAAGTGATTTAACGGCTTAAGTGCCGAAGAGCGATCGGGAAGCCCCCGACAGCCGCACTGAGAGGCAGCGGCAAATATATAAGTACGCCCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTA 3214888-3214962 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCG rpsU-dnaG-rpoD rpoD rpoDp3 3212688 forward rpoD(3213047,3214888) rpoD(3213047,3214888) rho-independent(3214943,3214962) 3212688-3214962 3212688-3213047 AAGAATATTGCTGAGCAAACCTTCACCGACTCACTCAACCATATGTTTGATTCGCTGCTTGAACTGCGCCAGGAAGAGTTAATCGCTCGTGAGCGCACGCATGGTTTAAGCAACGAAGAACGCCTGGAGCTCTGGACATTAAACCAGGAGCTGGCGAAAAAGTGATTTAACGGCTTAAGTGCCGAAGAGCGATCGGGAAGCCCCCGACAGCCGCACTGAGAGGCAGCGGCAAATATATAAGTACGCCCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTA 3214888-3214962 ATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCG rpsU-dnaG-rpoD rpoD rpoDp4 3212693 forward rpoD(3213047,3214888) rpoD(3213047,3214888) 3212693-3214888 3212693-3213047 TATTGCTGAGCAAACCTTCACCGACTCACTCAACCATATGTTTGATTCGCTGCTTGAACTGCGCCAGGAAGAGTTAATCGCTCGTGAGCGCACGCATGGTTTAAGCAACGAAGAACGCCTGGAGCTCTGGACATTAAACCAGGAGCTGGCGAAAAAGTGATTTAACGGCTTAAGTGCCGAAGAGCGATCGGGAAGCCCCCGACAGCCGCACTGAGAGGCAGCGGCAAATATATAAGTACGCCCTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTA ileX ileX ileXp 3215597 forward ileX(3215598,3215673) ileX(3215598,3215673) rho-independent(3215675,3215716) 3215597-3215716 3215597-3215598 TG 3215673-3215716 AGATATAGCAAAGGCTGACGAGAAATCGTCAGCCTTTTTCTTTT nfeF nfeF yqjHp 3216538 reverse nfeF(3215727,3216491) nfeF(3215727,3216491) 3215727-3216538 3216491-3216538 CGAGTTTTATTTAGATATATCTGATTACCATCACGAAGGCGATAACAA nfeR nfeR nfeRp 3216753 forward nfeR(3216779,3217402) nfeR(3216779,3217402) 3216753-3217402 3216753-3216779 ATCTAATTAAGCAAAAGGAGGCTGATA aer aer aerp 3219120 reverse aer(3217556,3219076) aer(3217556,3219076) 3217556-3219120 3219076-3219120 CTGACAAGAAGTTAACAACCATATAACCTGCACAGGACGCGAACA patA patA patAp 3219458 forward patA(3219494,3220873) patA(3219494,3220873) 3219458-3220873 3219458-3219494 CGGTATCATGTGATACGCGAGCCTCCGGAGCATATTT patA patA patAp2 3219458 forward patA(3219494,3220873) patA(3219494,3220873) 3219458-3220873 3219458-3219494 CGGTATCATGTGATACGCGAGCCTCCGGAGCATATTT ebgR ebgR ebgRp 3221437 forward ebgR(3221466,3222449) ebgR(3221466,3222449) 3221437-3222449 3221437-3221466 GCACATCAGGGAAAGTAAAAAAGGTAAACA ebgAC ebgAC ebgAp 3222551 forward ebgA(3222633,3225725) ebgC(3225722,3226171) 3222551-3226171 3222551-3222633 AAAAATTTTACTAAACTCCCCAGCAATTACACAAACTACCATCACCATGAATGGTTCCGATTTCTCTCTACCGGGAGGCCCTA fadH fadH fadHp 3231624 forward fadH(3231665,3233683) fadH(3231665,3233683) 3231624-3233683 3231624-3231665 ATCCGACCACATAACAATTATTTTACATACTGGACAATTTTA higBA higBA higBp 3234480 reverse higB(3234141,3234455) higA(3233728,3234144) 3233728-3234480 3234455-3234480 AATTTGTCAACGGACGTGATGAAGAA ygjR ygjR ygjRp 3237282 forward ygjR(3237311,3238297) ygjR(3237311,3238297) 3237282-3238297 3237282-3237311 AGAATCCCTTTATGGAGTATCCACGCGTTA sstT sstT sstTp 3239863 forward sstT(3239944,3241188) sstT(3239944,3241188) 3239863-3241188 3239863-3239944 GCAAACACTTTGTTACATCCTGAAAGATGCGTCGACAGAACGCACCAGGGATGTGCGACAACACAATGAAAGGATCGAAAAA uxaCA uxaCA uxaCp1 3244843 reverse uxaC(3243329,3244741) uxaA(3241827,3243314) 3241827-3244843 3244741-3244843 TCTAACTCACGAAAATATCTTCGGACTCTGGAAATTGGTGTGATAACTTTGTCAGCATCGCACCATAAGCAAGCTAGCTCACTCGTTGAGAGGAAGACGAAAA uxaCA uxaCA uxaCp2 3244857 reverse uxaC(3243329,3244741) uxaA(3241827,3243314) 3241827-3244857 3244741-3244857 ACTACGTTTATTGATCTAACTCACGAAAATATCTTCGGACTCTGGAAATTGGTGTGATAACTTTGTCAGCATCGCACCATAAGCAAGCTAGCTCACTCGTTGAGAGGAAGACGAAAA exuT exuT exuTp2 3245002 forward exuT(3245224,3246522) exuT(3245224,3246522) 3245002-3246522 3245002-3245224 CCGTCGCAAATCATAAGTCGACGGAATGCAAATTGCCGATTCATTCATTTGTTAGATGAATCGGGTTAACCGGTACGGAAGCCGAATTAGCACGAAACTTTCATGGCAACGTTCGGGGCGTGCCGGTTTTTTTTCGGTTACCCGGTCGTAACTAACATCTTCAGCCTCTGGCGGGATGATGGCCGCGCTTCCTGCGGATATAACAAAACGATGAGGTTTTACA exuT exuT exuTp1 3245043 forward exuT(3245224,3246522) exuT(3245224,3246522) 3245043-3246522 3245043-3245224 CATTCATTTGTTAGATGAATCGGGTTAACCGGTACGGAAGCCGAATTAGCACGAAACTTTCATGGCAACGTTCGGGGCGTGCCGGTTTTTTTTCGGTTACCCGGTCGTAACTAACATCTTCAGCCTCTGGCGGGATGATGGCCGCGCTTCCTGCGGATATAACAAAACGATGAGGTTTTACA exuR exuR exuRp2 3246618 forward exuR(3246652,3247428) exuR(3246652,3247428) 3246618-3247428 3246618-3246652 AAATATAGTCTGCCGTATCATGCCTGGAGCGCATA yqjA-mzrA yqjA-mzrA yqjAp1 3247548 forward yqjA(3247773,3248435) mzrA(3248439,3248822) 3247548-3248822 3247548-3247773 TCCACGGACATGTAATTTTGATAACGAACAACGTTGACCTTTGTTACAATTAGATTCAATTTGAATTTATGTTTTTGAATGCTTTCTTATCTCACGATTTAACAGGGAATAGTTCAGGCTGTGTTGATGTATCAAACCCGCAGAACATACCAAAACAGCAATAACATTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAA yqjA-mzrA yqjA-mzrA yqjAp2 3247643 forward yqjA(3247773,3248435) mzrA(3248439,3248822) 3247643-3248822 3247643-3247773 GATTTAACAGGGAATAGTTCAGGCTGTGTTGATGTATCAAACCCGCAGAACATACCAAAACAGCAATAACATTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAACCGATTCACCAGGAATAATGAA tdcABCDEFG tdcABCDEFG tdcAp 3267093 reverse tdcA(3266127,3267065) tdcG(3258285,3259649) 3258285-3267093 3267065-3267093 GTCAATGAGGTAATTAACGTAGGTCGTTA garPLRK-rnpB rnpB rnpBp 3270592 reverse rnpB(3270216,3270592) rnpB(3270216,3270592) rho-independent(3269962,3269975) 3269962-3270592 3270592-3270592 G 3269962-3270216 TGATTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGG garPLRK-rnpB rnpB rnpBp 3270592 reverse rnpB(3270216,3270592) rnpB(3270216,3270592) rho-independent(3270075,3270088) 3270075-3270592 3270592-3270592 G 3270075-3270216 TGATTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGG garPLRK-rnpB rnpB rnpBp 3270592 reverse rnpB(3270216,3270592) rnpB(3270216,3270592) rho-independent(3270188,3270201) 3270188-3270592 3270592-3270592 G 3270188-3270216 TGATTTACGTAAAAACCCGCTTCGGCGGG garPLRK-rnpB garR garRp 3272820 reverse garR(3271867,3272751) garR(3271867,3272751) 3271867-3272820 3272751-3272820 CACTCAGAAACTGGCTGATACCTTTAAAAAATAACCACCACCGCAACAAGAGAGATGATTGATATGACTA garPLRK-rnpB garPLRK-rnpB garPp 3274934 reverse garP(3273573,3274907) rnpB(3270216,3270592) rho-independent(3269959,3269992) 3269959-3274934 3274907-3274934 TCAGCATAAGTACCCGAGGTAAATAAAA 3269959-3270216 TGATTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGTTTTACGTAAAAACCCGCTTCGGCGGGTTT prlF-yhaV sohA-yhaV sohAp 3276972 forward prlF(3277002,3277337) yhaV(3277337,3277801) 3276972-3277801 3276972-3277002 AGAAAACAGGCTGTAAAAGGACAGTGAATCA agaR agaR agaRp 3278703 reverse agaR(3277856,3278665) agaR(3277856,3278665) 3277856-3278703 3278665-3278703 AAACGAAATGAAACGAAAGTTTTACGAAAGGACTTACTA kbaZ-agaVWA kbaZ-agaVWA kbaZp 3278866 forward kbaZ(3278914,3280194) agaA(3281122,3281625) 3278866-3281625 3278866-3278914 AAACAAAACGAAAGATTAATATCGCAGTAATCTGAACTGGAGAGGAAAG agaS-kbaY-agaBCDI agaSYBCDI agaSp 3281889 forward agaS(3281976,3283130) agaI(3286270,3287025) 3281889-3287025 3281889-3281976 CGAAAGACATCACCAAGTGAAATGAAACGAAAGGCAAGTGAAAGCGACAACGCCCGACGTCAAGTTCATCAGACTAAGGATTGAGTTA dolP dolP dolPp2 3296072 forward dolP(3296409,3296984) dolP(3296409,3296984) 3296072-3296984 3296072-3296409 GATTGCCAACGATCGCTTACATGATGAAGTGTATGCAAAACAGGTGCGGGCGCTGGGTCATGCGGGAGATGTATTGTTAGCCATTTCCACCCGTGGCAACAGCCGCGATATTGTTAAAGCAGTTGAAGCCGCCGTTACGCGTGATATGACCATTGTGGCATTGACCGGCTATGACGGCGGCGAACTTGCAGGTTTGTTAGGGCCACAGGATGTGGAGATCCGCATTCCTTCGCATCGTAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCGATCTGATCGATAACACGCTTTTCCCTCACCAGGATGATTAAGGAGAATACA dolP dolP dolPp1 3296349 forward dolP(3296409,3296984) dolP(3296409,3296984) 3296349-3296984 3296349-3296409 TGCCTGTGCGATCTGATCGATAACACGCTTTTCCCTCACCAGGATGATTAAGGAGAATACA yraR yraR yraRp 3298897 reverse yraR(3298211,3298846) yraR(3298211,3298846) 3298211-3298897 3298846-3298897 TGGTGCATGAGCCGTGGAGCGCAAGGCAGACAATTCTGTAAAGGAGCGAAGA ubiT-yhbS ubiT-yhbS ubiTp2 3301301 reverse ubiT(3300752,3301276) yhbS(3300255,3300758) 3300255-3301301 3301276-3301301 ATTGTTGAAACAGGGAGTAAAACTCG ubiT-yhbS ubiT-yhbS ubiTp1 3301368 reverse ubiT(3300752,3301276) yhbS(3300255,3300758) 3300255-3301368 3301276-3301368 AGCAATTTCATATGGAATTGTTGATTTATACCGCTATGTTATTTTTCTGATATGGCAAAATAGGATGATTGTTGAAACAGGGAGTAAAACTCG mtr mtr mtrp2 3305860 reverse mtr(3304573,3305817) mtr(3304573,3305817) 3304573-3305860 3305817-3305860 ATAACAACGCAGTCGCACTATTTTTCACTGGAGAGAAGCCCTCA mtr mtr mtrp1 3305932 reverse mtr(3304573,3305817) mtr(3304573,3305817) 3304573-3305932 3305817-3305932 ATACAGCCCCGATTTTTACCATCGGGGCTTTTTTTCTGTCTTTTGTACTCGTGTACTGGTACAGTGCAATGCATAACAACGCAGTCGCACTATTTTTCACTGGAGAGAAGCCCTCA yrbN-deaD yrbN-deaD yrbNp1 3308086 reverse yrbN(3307853,3307933) deaD(3305971,3307860) 3305971-3308086 3307933-3308086 TCCTGGGCCAGGACCAAGATGACCTGGCAGAATCGGACCAGCAATAGCTGACGTACACATCAGCCCGTAATCTTTTTTGATTGCCATCACCTTAACGGGTGAGGGCGTTGTTGTTCGTTAATACACCTACTTTGAGCCGGTTCACACTTTTCAA yrbN-deaD yrbN-deaD yrbNp2 3308698 reverse yrbN(3307853,3307933) deaD(3305971,3307860) 3305971-3308698 3307933-3308698 GTCTGAGGGCATTAGCGCGTAACGATTTTTCGCAAGCGCTGGCAATCCGACCGGATATGCCTGAAGTATTCAATTACTTAGGCATATATTTAACGCAGGCAGGCAATTTTGATGCTGCCTATGAAGCGTTTGATTCTGTACTTGAGCTTGATCCAACTTACAACTACGCGCACTTGAATCGCGGGATCGCATTATATTACGGCGGTCGTGACAAGTTAGCGCAAGATGATCTGCTGGCGTTTTATCAAGACGATCCCAATGATCCTTTCCGTAGTCTGTGGCTTTATCTCGCCGAGCAGAAGCTCGATGAGAAGCAGGCTAAAGAAGTGTTGAAACAGCACTTCGAAAAATCGGATAAGGAACAGTGGGGATGGAACATTGTCGAGTTCTACCTGGGCAACATTAGCGAACAAACGTTAATGGAAAGGCTCAAGGCGGACGCAACGGATAACACCTCGCTCGCTGAGCATCTCAGTGAAACCAACTTCTATTTAGGTAAGTACTACCTAAGTCTGGGGGATTTGGACAGCGCCACGGCACTGTTCAAACTGGCGGTTGCCAACAACGTTCATAACTTTGTTGAGCACCGATACGCATTGTTGGAATTATCGCTCCTGGGCCAGGACCAAGATGACCTGGCAGAATCGGACCAGCAATAGCTGACGTACACATCAGCCCGTAATCTTTTTTGATTGCCATCACCTTAACGGGTGAGGGCGTTGTTGTTCGTTAATACACCTACTTTGAGCCGGTTCACACTTTTCAA sraG sraG sraGp 3311183 forward sraG(3311183,3311398) sraG(3311183,3311398) rho-independent(3311372,3311398) 3311183-3311398 3311183-3311183 T metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp pnp pnpp 3311326 reverse pnp(3309033,3311168) pnp(3309033,3311168) rho-independent(3308999,3309021) 3308999-3311326 3311168-3311326 ATGAATGATCTTCCGTTGCAGAGGTTCGCGCGGCTAATGAGAGGCTTTACCCACATAGAGCTGGGTTAGGGTTGTCATTAGTCGCGAGGATGCGCAGAAGATCGGGTATTAACACCAGTGCCGTAAGGTACTGTCTAAGAAAGAGAAAGGATATTACAT 3308999-3309033 AGGTTGCCATTTGCCCTCCGCTGCGGCGGGGGGCT metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp rpsO-pnp rpsOp 3311786 reverse rpsO(3311415,3311684) pnp(3309033,3311168) rho-independent(3308999,3309021) 3308999-3311786 3311684-3311786 GCTTAACGTCGCGTAAATTGTTTAACACTTTGCGTAACGTACACTGGGATCGCTGAATTAGAGATCGGCGTCCTTTCATTCTATATACTTTGGAGTTTTAAAA 3308999-3309033 AGGTTGCCATTTGCCCTCCGCTGCGGCGGGGGGCT metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp rpsO rpsOp 3311786 reverse rpsO(3311415,3311684) rpsO(3311415,3311684) rho-independent(3311372,3311398) 3311372-3311786 3311684-3311786 GCTTAACGTCGCGTAAATTGTTTAACACTTTGCGTAACGTACACTGGGATCGCTGAATTAGAGATCGGCGTCCTTTCATTCTATATACTTTGGAGTTTTAAAA 3311372-3311415 ATTCTTGCGAGTTTCAGAAAAGGGGGCCTGAGTGGCCCCTTTTT metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp infB infBp 3316027 reverse infB(3313342,3316014) infB(3313342,3316014) rho-independent(3313185,3313239) 3313185-3316027 3316014-3316027 AGGAAGGAACAGCA 3313185-3313342 AGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTAACAGCCCCTTTTTTGTCAGGAGAA metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp nusA-infB nusAp 3317602 reverse nusA(3316039,3317526) infB(3313342,3316014) rho-independent(3313185,3313239) 3313185-3317602 3317526-3317602 GTTCGCGCTGAGTAATATCCAGAAGGCGAACCTGGTTCCCCACTTTTAATAGTCTGGATGAGGTGAAAAGCCCGCGA 3313185-3313342 AGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTAACAGCCCCTTTTTTGTCAGGAGAA metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp rimP-nusA-infB rimPp 3318175 reverse rimP(3317554,3318006) infB(3313342,3316014) rho-independent(3313185,3313239) 3313185-3318175 3318006-3318175 ACTTCGGCCTTCGTAGTGGGATTTGAAAAAATCCTTCTGGAAAGTGCTCCAGACCGCAGTTGCGGTTATAGGGTTCAGTTATATAAAGCCCCGATTTATCGGGGTTTTTTGTTATCTGACTACAGAATAACTGGGCTTTAGGCCCTTTTTTTATGTCTTGGGGGTGGGCT 3313185-3313342 AGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTAACAGCCCCTTTTTTGTCAGGAGAA metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp metYp1 3318297 reverse metY(3318213,3318289) pnp(3309033,3311168) rho-independent(3308999,3309021) 3308999-3318297 3318289-3318297 GTTTCAGGC 3308999-3309033 AGGTTGCCATTTGCCCTCCGCTGCGGCGGGGGGCT metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY-yhbC-nusA-infB metYp1 3318297 reverse metY(3318213,3318289) infB(3313342,3316014) rho-independent(3313185,3313239) 3313185-3318297 3318289-3318297 GTTTCAGGC 3313185-3313342 AGGTTTTTAGGGTTCCATGCGGGATAAGGCGTTTACGCTGCATCCGGCATGGATTGCCTGATGTGACGCTGGCGCGTCTTATCAGGTCAACGTGAACAGCCCTTCCACCTGAAATTAATTTTAAAAAGGGGCTAACAGCCCCTTTTTTGTCAGGAGAA metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY metYp1 3318297 reverse metY(3318213,3318289) metY(3318213,3318289) rho-independent(3318072,3318087) 3318072-3318297 3318289-3318297 GTTTCAGGC 3318072-3318213 ACTTTCCCTTAGAGTCCTTTTTCAAATATACTGTGAAGACTTCGGCCTTCGTAGTGGGATTTGAAAAAATCCTTCTGGAAAGTGCTCCAGACCGCAGTTGCGGTTATAGGGTTCAGTTATATAAAGCCCCGATTTATCGGGG metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY metYp1 3318297 reverse metY(3318213,3318289) metY(3318213,3318289) rho-independent(3318031,3318043) 3318031-3318297 3318289-3318297 GTTTCAGGC 3318031-3318213 ACTTTCCCTTAGAGTCCTTTTTCAAATATACTGTGAAGACTTCGGCCTTCGTAGTGGGATTTGAAAAAATCCTTCTGGAAAGTGCTCCAGACCGCAGTTGCGGTTATAGGGTTCAGTTATATAAAGCCCCGATTTATCGGGGTTTTTTGTTATCTGACTACAGAATAACTGGGCTTTAGGCCC metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY-yhbC-nusA-infB-rbfA-truB-rpsO-pnp metYp2 3318375 reverse metY(3318213,3318289) pnp(3309033,3311168) rho-independent(3308999,3309021) 3308999-3318375 3318289-3318375 AGATTTTACGTCCCGTCTCGGTACACCAAATCCCAGCAGTATTTGCATTTTTTACCCAAAACGAGTAGAATTTGCCACGTTTCAGGC 3308999-3309033 AGGTTGCCATTTGCCCTCCGCTGCGGCGGGGGGCT metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY metYp2 3318375 reverse metY(3318213,3318289) metY(3318213,3318289) rho-independent(3318072,3318087) 3318072-3318375 3318289-3318375 AGATTTTACGTCCCGTCTCGGTACACCAAATCCCAGCAGTATTTGCATTTTTTACCCAAAACGAGTAGAATTTGCCACGTTTCAGGC 3318072-3318213 ACTTTCCCTTAGAGTCCTTTTTCAAATATACTGTGAAGACTTCGGCCTTCGTAGTGGGATTTGAAAAAATCCTTCTGGAAAGTGCTCCAGACCGCAGTTGCGGTTATAGGGTTCAGTTATATAAAGCCCCGATTTATCGGGG metY-rimP-nusA-infB-rbfA-truB-rpsO-pnp metY metYp2 3318375 reverse metY(3318213,3318289) metY(3318213,3318289) rho-independent(3318031,3318043) 3318031-3318375 3318289-3318375 AGATTTTACGTCCCGTCTCGGTACACCAAATCCCAGCAGTATTTGCATTTTTTACCCAAAACGAGTAGAATTTGCCACGTTTCAGGC 3318031-3318213 ACTTTCCCTTAGAGTCCTTTTTCAAATATACTGTGAAGACTTCGGCCTTCGTAGTGGGATTTGAAAAAATCCTTCTGGAAAGTGCTCCAGACCGCAGTTGCGGTTATAGGGTTCAGTTATATAAAGCCCCGATTTATCGGGGTTTTTTGTTATCTGACTACAGAATAACTGGGCTTTAGGCCC argG argG argGp 3318562 forward argG(3318637,3319980) argG(3318637,3319980) 3318562-3319980 3318562-3318637 ATTTATTTTGCATAAAAATTCAGTGAGAGCGGAAATCCAGGCTCATCATCAGTTAATTAAGCAGGGTGTTATTTTA secG-leuU leuU leuUp 3322278 reverse leuU(3322072,3322158) leuU(3322072,3322158) 3322072-3322278 3322158-3322278 CAAAACCAATAAAGGTAGCGAATGGGAAAATCTGAGTGCACCGGCGAAAACCGAACAAACTCAGCCAGCTGCTCCGGCTAAGCCGACCAGCGATATCCCGAACTAAAAAGTAGTATCCGTG secG-leuU secG-leuU secGp1 3322587 reverse secG(3322173,3322505) leuU(3322072,3322158) rho-independent(3322035,3322071) 3322035-3322587 3322505-3322587 GCTTCAGTGGGAAAGATTAAAAACTCCCGCTTTATTGGTTGAAGCATTGGTACGCGGCAACTCCGCAAGGAACAGGTTGATTA 3322035-3322072 AAATTCCAGAAAAGAGACGCTGAAAAGCGTCTTTTTTC secG-leuU secG-leuU secGp2 3322590 reverse secG(3322173,3322505) leuU(3322072,3322158) rho-independent(3322035,3322071) 3322035-3322590 3322505-3322590 CCCGCTTCAGTGGGAAAGATTAAAAACTCCCGCTTTATTGGTTGAAGCATTGGTACGCGGCAACTCCGCAAGGAACAGGTTGATTA 3322035-3322072 AAATTCCAGAAAAGAGACGCTGAAAAGCGTCTTTTTTC rlmE-ftsH rlmE-ftsH rlmEp2 3327731 reverse rlmE(3327035,3327664) ftsH(3325001,3326935) rho-independent(3324942,3324969) 3324942-3327731 3327664-3327731 ATCACCAAATAGGCGCGTAAAAATTTACGCAATTGGTTACGATGAGTTATCCCCATGGGAAAGTTAAA 3324942-3325001 AGTTCCCGCATCAGATGACTGTATTTGTACCGAAAACCCCGGGGCGTGCTCCGGGGTTTT yhbY yhbY yhbYp 3327759 forward yhbY(3327790,3328083) yhbY(3327790,3328083) 3327759-3328083 3327759-3327790 GTTTTCAATCCCAACGTAAGCAAAAAATACGA rlmE-ftsH rlmE-ftsH rlmEp1 3327760 reverse rlmE(3327035,3327664) ftsH(3325001,3326935) rho-independent(3324942,3324969) 3324942-3327760 3327664-3327760 ACGGGTCATTCTACCGCCATCTCCCATATATCACCAAATAGGCGCGTAAAAATTTACGCAATTGGTTACGATGAGTTATCCCCATGGGAAAGTTAAA 3324942-3325001 AGTTCCCGCATCAGATGACTGTATTTGTACCGAAAACCCCGGGGCGTGCTCCGGGGTTTT greA greA greAp2 3328853 reverse greA(3328239,3328715) greA(3328239,3328715) rho-independent(3328806,3328846) 3328806-3328853 3328715-3328853 AATTGTAGCTGACCTGGGACTTGTACCCGGGTCGGTATTTTTTTGCTTCTGGTCCCGGTAAGGAGTTATGCCGGGCAGGCCGAACAGCCGGGGTGGGTGAAGACTTGCCCTATCAGGAATATTCAAGAGGTATAACAAA greA greA greAp1 3328864 reverse greA(3328239,3328715) greA(3328239,3328715) rho-independent(3328806,3328846) 3328806-3328864 3328715-3328864 ATCAAAATGTGAATTGTAGCTGACCTGGGACTTGTACCCGGGTCGGTATTTTTTTGCTTCTGGTCCCGGTAAGGAGTTATGCCGGGCAGGCCGAACAGCCGGGGTGGGTGAAGACTTGCCCTATCAGGAATATTCAAGAGGTATAACAAA rplU-rpmA-yhbE-obgE rplU-rpmA rplUp 3333516 reverse rplU(3333140,3333451) rpmA(3332862,3333119) 3332862-3333516 3333451-3333516 CTATTGTGAATATTTATAGCGCACTCTGAATCATTGAAAAGGTGTGCGCGGAAGCGGAGTTTTATA rplU-rpmA-yhbE-obgE rplU-rpmA-yhbE-obgE rplUp 3333516 reverse rplU(3333140,3333451) obgE(3330582,3331754) 3330582-3333516 3333451-3333516 CTATTGTGAATATTTATAGCGCACTCTGAATCATTGAAAAGGTGTGCGCGGAAGCGGAGTTTTATA sfsB sfsB sfsBp 3334858 forward sfsB(3334909,3335187) sfsB(3334909,3335187) 3334858-3335187 3334858-3334909 GACAGAAGAAGTGTTCTGAATGAAAGCGACTAACTTAAGGAGTGAGGAAAAA ibaG-murA ibaG-murA ibaGp1 3336833 reverse ibaG(3336549,3336803) murA(3335235,3336494) 3335235-3336833 3336803-3336833 CTGGTTTATTAACTGATGATTGAAGATCCCA ibaG-murA ibaG ibaGp2 3336886 reverse ibaG(3336549,3336803) ibaG(3336549,3336803) 3336549-3336886 3336803-3336886 AGCGAGGCTTTTTGCTTATTTATGCCAGCGCAACTTTGCTCTAAGATGTTTCGCTGGTTTATTAACTGATGATTGAAGATCCCA mlaFEDCB mlaFEDCB mlaFp3 3340102 reverse mlaF(3339256,3340065) mlaB(3336963,3337256) 3336963-3340102 3340065-3340102 CATGCTTAGAAAATCAACGCAAGACGAAGGGTGAATTA mlaFEDCB mlaFEDCB mlaFp2 3340121 reverse mlaF(3339256,3340065) mlaB(3336963,3337256) 3336963-3340121 3340065-3340121 TCAAGGTTAAATTGAGCGCCATGCTTAGAAAATCAACGCAAGACGAAGGGTGAATTA mlaFEDCB mlaFEDCB mlaFp1 3340132 reverse mlaF(3339256,3340065) mlaB(3336963,3337256) 3336963-3340132 3340065-3340132 ATATGTTGGGTTCAAGGTTAAATTGAGCGCCATGCTTAGAAAATCAACGCAAGACGAAGGGTGAATTA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr yrbG-kdsD yrbGp 3340211 forward yrbG(3340275,3341252) kdsD(3341266,3342252) 3340211-3342252 3340211-3340275 ATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr yrbG-kdsDC-lptCAB yrbGp 3340211 forward yrbG(3340275,3341252) lptB(3343944,3344669) 3340211-3344669 3340211-3340275 ATCCGTTACGGCTTTCTGAAAATCTTCAGCGGACCGGCGAGTATACCTGAAGAAAGGACGTTAGA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr kdsC-lptCAB kdsCp3 3341719 forward kdsC(3342273,3342839) lptB(3343944,3344669) 3341719-3344669 3341719-3342273 GAAGCCTGTCCGTTAGGGCTGGCACCGACCAGCAGCACCACCGCCACGCTGGTTATGGGCGATGCCCTCGCTGTCGCGCTGTTAAAAGCACGCGGCTTTACTGCTGAAGATTTTGCGCTCTCACACCCAGGCGGCGCACTGGGTCGTAAACTTCTGCTGCGCGTAAACGATATTATGCATACGGGCGATGAGATCCCGCATGTTAAGAAAACGGCCAGTCTGCGTGACGCGTTGCTGGAAGTTACCCGCAAAAATCTTGGTATGACTGTCATTTGCGATGACAATATGATGATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGATTTACTGCGTGCAGGCGTAGTGTAAAGATTCAAGGATAAACAACAA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr kdsC-lptCAB kdsCp2 3342010 forward kdsC(3342273,3342839) lptB(3343944,3344669) 3342010-3344669 3342010-3342273 ATTGAAGGCATCTTTACCGACGGTGATTTACGCCGTGTCTTCGATATGGGCGTGGATGTTCGTCAGTTAAGTATTGCCGATGTGATGACGCCGGGGGGAATACGTGTGCGCCCTGGCATTCTGGCCGTTGAGGCACTGAACTTAATGCAGTCCCGCCATATCACCTCCGTGATGGTTGCCGATGGCGACCATTTACTCGGTGTGTTACATATGCATGATTTACTGCGTGCAGGCGTAGTGTAAAGATTCAAGGATAAACAACAA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr kdsC-lptCAB kdsCp1 3342226 forward kdsC(3342273,3342839) lptB(3343944,3344669) 3342226-3344669 3342226-3342273 GATTTACTGCGTGCAGGCGTAGTGTAAAGATTCAAGGATAAACAACAA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr lptAB lptAp2 3343299 forward lptA(3343380,3343937) lptB(3343944,3344669) 3343299-3344669 3343299-3343380 CATTTAACTCCAGCGGTCTGAAAATGCGCGGCAACTTACGCAGCAAGAACGCCGAGCTGATTGAAAAGGTTAGAACATCCTA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr lptAB lptAp1 3343326 forward lptA(3343380,3343937) lptB(3343944,3344669) 3343326-3344669 3343326-3343380 GCGGCAACTTACGCAGCAAGAACGCCGAGCTGATTGAAAAGGTTAGAACATCCTA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr lptB-rpoN-hpf-ptsN-yhbJ lptBp 3343396 forward lptB(3343944,3344669) rapZ(3347115,3347969) 3343396-3347969 3343396-3343944 ACAAACTCAGCCTTAATCTTGTGCTTGCCAGCTCACTTCTGGCCGCCAGCATTCCGGCATTTGCCGTAACCGGAGACACTGATCAGCCGATCCACATTGAATCGGACCAGCAATCTCTTGATATGCAAGGCAACGTGGTTACCTTTACCGGTAATGTCATCGTCACCCAGGGCACCATCAAAATTAATGCCGACAAAGTGGTCGTTACCCGTCCGGGCGGCGAACAAGGTAAAGAAGTGATTGACGGCTACGGTAAACCGGCAACGTTCTACCAGATGCAGGACAACGGTAAACCCGTTGAAGGTCACGCTTCCCAGATGCACTACGAACTGGCAAAAGATTTTGTCGTTCTGACGGGTAATGCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGACAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTA yrbG-kdsDC-lptCAB-rpoN-hpf-ptsN-rapZ-npr rpoN-hpf-ptsN-yhbJ-npr rpoNp 3344662 forward rpoN(3344717,3346150) npr(3347966,3348238) rho-dependent(3348261,3348289) 3344662-3348289 3344662-3344717 GACTCTGATAGGGTAGAAGTTTGCGACGTTTTAGCAGGAGAGTACGATTCTGAACA 3348238-3348289 ATCTTCATCACTTTGACATACAACTCCCTTCAAACTCCCCCCGACAATAAGA yrbL yrbL yrbLp 3348421 forward yrbL(3348452,3349084) yrbL(3348452,3349084) 3348421-3349084 3348421-3348452 AGATCGTCAGAAAATATTTCCAGGAGATGGCA arcZ arcZ arcZp 3350577 forward arcZ(3350577,3350697) arcZ(3350577,3350697) rho-independent(3350671,3350697) 3350577-3350697 3350577-3350577 G arcB arcB arcBp 3353049 reverse arcB(3350689,3353025) arcB(3350689,3353025) 3350689-3353049 3353025-3353049 AGGTTGTCGTGAAGGAATTCCCTAA gltBDF gltBDF gltBp 3354509 forward gltB(3354725,3359185) gltF(3361176,3361940) 3354509-3361940 3354509-3354725 ATCCGCTGGAAGCTTTCTGGATGAGCAGCCTGCTCATCATATTTATGCAGTAATTGAGATCCCCTCTTCACCGTATTAACCGATGCGAAAAGGACAACAAGGGGGCGAATGCGAGGCGCGCGTATGACACGCAAACCCCGTCGCCACGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATA gltBDF gltBDF gltBp2 3354509 forward gltB(3354725,3359185) gltF(3361176,3361940) 3354509-3361940 3354509-3354725 ATCCGCTGGAAGCTTTCTGGATGAGCAGCCTGCTCATCATATTTATGCAGTAATTGAGATCCCCTCTTCACCGTATTAACCGATGCGAAAAGGACAACAAGGGGGCGAATGCGAGGCGCGCGTATGACACGCAAACCCCGTCGCCACGCTCTTTCTGTGCCCGTGCGCAGCGGTTCGGAAGTGGGGTTCCCGCAGAGCCTGGGGGAGGTTCACGATA nanATEKQ nanATEK-yhcH nanAp 3373620 reverse nanA(3372683,3373576) nanQ(3369014,3369478) 3369014-3373620 3373576-3373620 AAAGGTATATCGTTTATCAGACAAGCATCACTTCAGAGGTATTTA nanATEKQ nanA nanAp 3373620 reverse nanA(3372683,3373576) nanA(3372683,3373576) 3372683-3373620 3373576-3373620 AAAGGTATATCGTTTATCAGACAAGCATCACTTCAGAGGTATTTA dcuD dcuD dcuDp2 3374583 forward dcuD(3374869,3376236) dcuD(3374869,3376236) 3374583-3376236 3374583-3374869 CATTACCATAATTAACGGAATAATTAACTATTGCGAAAAATTAATGTAACGCAGATAAAAACATCCCGTTTGAATTATTTATAAGACTATTCACGAGCATTATGAATATTATGAATGTGTTCTTACAAAATAATCATAAGCGCATATTTTTTAATGAAAAATCACCTCACCTACAATTAAAAACACGACATCCGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTCTTTTGACACGGAGTTCAACAA dcuD dcuD dcuDp1 3374766 forward dcuD(3374869,3376236) dcuD(3374869,3376236) 3374766-3376236 3374766-3374869 CACGACATCCGCACCATAAATAGCCTTGCAAAAAATATAACATCGTTGTTTTCAATCTGCCGTTTATGGGATTGACCGTTTTCTTTTGACACGGAGTTCAACAA sspAB sspAB sspAp 3377569 reverse sspA(3376782,3377420) sspB(3376279,3376776) rho-independent(3376249,3376277) 3376249-3377569 3377420-3377569 ATCCAATTTTCTGCCCAAATGTCGGGTATTGCTCATTTTTTGTTTGATTTTCGAACAAAGAGAGTCGTTCCTTATTGGGTAACACAACTTCTGACTGGCCACCTGGTGGCTGGTAGCAGTAAAAATTCTGACTATACCTGGAGGTTTTCA 3376249-3376279 ATACAAAACAGGCCCAGGCGGCCTGTTTTGT rplM-rpsI rplM-rpsI rplMp 3378808 reverse rplM(3378223,3378651) rpsI(3377815,3378207) rho-independent(3377756,3377782) 3377756-3378808 3378651-3378808 ACCCCACGTTACAAGAAAGTTTTTTTCCCAAAACTTTTTGTGTGCTGGCATAGGCTATTCGAAGGGGTAGGTTTGCCGGACTTTGTCGTGTGAACCTCAACAATTGAAGACGTTTGGGTGTTCACCAACGTGTAACTATTTATTGGGTAAGCTTTTAA 3377756-3377815 ATTGGCTTCTGCTCCGGCAGAAAACAATTTTCGAAAAAACCCGCTTCGGCGGGTTTTTTT zapG yhcB yhcBp 3380182 forward zapG(3380191,3380589) zapG(3380191,3380589) 3380182-3380589 3380182-3380191 GAGATGTTCA degQS degQS degQp1 3380654 forward degQ(3380743,3382110) degS(3382200,3383267) 3380654-3383267 3380654-3380743 GGTGTCTCATTGTTAGCCGTCTGAAAATTCAATAACATCAAACTGTTTTGAATCTCTTTTCTTATCATTCAGGTACGAGAGCAGGAATAA degQS degQ degQp 3380698 forward degQ(3380743,3382110) degQ(3380743,3382110) rho-independent(3382115,3382154) 3380698-3382154 3380698-3380743 GTTTTGAATCTCTTTTCTTATCATTCAGGTACGAGAGCAGGAATAA 3382110-3382154 ATGTCGTAAACCGGGCATCAGGCTTACGTGTGATGTCCGGTTAAC degQS degQ degQp 3380698 forward degQ(3380743,3382110) degQ(3380743,3382110) rho-independent(3382157,3382178) 3380698-3382178 3380698-3380743 GTTTTGAATCTCTTTTCTTATCATTCAGGTACGAGAGCAGGAATAA 3382110-3382178 ATGTCGTAAACCGGGCATCAGGCTTACGTGTGATGTCCGGTTAACTCGTGGTATGCTGCTGCCGTTCCC degQS degS degSp 3382173 forward degS(3382200,3383267) degS(3382200,3383267) rho-independent(3383281,3383316) 3382173-3383316 3382173-3382200 GTTCCCTTTTTTAATGACGCCTCCATCA 3383267-3383316 AGTCGTGCGCTCAAAACAAAAAACCGGAGTCTGTGCTCCGGTTTTTTATT mdh mdh mdhp1 3384313 reverse mdh(3383330,3384268) mdh(3383330,3384268) 3383330-3384313 3384268-3384313 GCGGAGCAACATATCTTAGTTTATCAATATAATAAGGAGTTTAGGA mdh mdh mdhp2 3384470 reverse mdh(3383330,3384268) mdh(3383330,3384268) 3383330-3384470 3384268-3384470 CTGTTGGAATGTTGCGCTAATGCATAAGCGACTGTTAATTACGTAAGTTAGGTTCCTGATTACGGCAATTAAATGCATAAACGCTAAACTTGCGTGACTACACATTCTTGAGATGTGGTCATTGTAAACGGCAATTTTGTGGATTAAGGTCGCGGCAGCGGAGCAACATATCTTAGTTTATCAATATAATAAGGAGTTTAGGA argR argR argRp2 3384602 forward argR(3384703,3385173) argR(3384703,3385173) 3384602-3385173 3384602-3384703 CTTTCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTA argR argR argRp1 3384677 forward argR(3384703,3385173) argR(3384703,3385173) 3384677-3385173 3384677-3384703 GTATCAACCACCATATCGGGTGACTTA aaeXAB aaeXAB aaeXp 3389430 reverse aaeX(3389134,3389337) aaeB(3386221,3388188) 3386221-3389430 3389337-3389430 AATGTTGCTCTCGCCCGGCTTTCCATGCCCTTCTCTGCGGCGACAGATGCTGAAAATAATAACGCCTGCTCTCTCTTTACAACCAAGGTCAACA aaeR aaeR aaeRp 3389496 forward aaeR(3389520,3390449) aaeR(3389520,3390449) 3389496-3390449 3389496-3389520 ATCACTTTTAAGTCAGAGTGAATAA mreBCD mreBCD mreBp1 3401129 reverse mreB(3400044,3401087) mreD(3398387,3398875) 3398387-3401129 3401087-3401129 GGATTTTCTTTTCCGCCCCAGCTTTCAGGATTATCCCTTAGTA mreBCD mreB mreBp1 3401129 reverse mreB(3400044,3401087) mreB(3400044,3401087) rho-independent(3400005,3400036) 3400005-3401129 3401087-3401129 GGATTTTCTTTTCCGCCCCAGCTTTCAGGATTATCCCTTAGTA 3400005-3400044 ATCGGATGCAGGCAGGGGAAGTGTCTGTTTACCCTGCCTG mreBCD mreBCD mreBp2 3401193 reverse mreB(3400044,3401087) mreD(3398387,3398875) 3398387-3401193 3401087-3401193 AATTTTCACCGTAGCAGATGATTTTTGCGCCTTGTCGCTGCTGCGTGTGGTTGGTAAAGTAAGCGGATTTTCTTTTCCGCCCCAGCTTTCAGGATTATCCCTTAGTA mreBCD mreB mreBp2 3401193 reverse mreB(3400044,3401087) mreB(3400044,3401087) rho-independent(3400005,3400036) 3400005-3401193 3401087-3401193 AATTTTCACCGTAGCAGATGATTTTTGCGCCTTGTCGCTGCTGCGTGTGGTTGGTAAAGTAAGCGGATTTTCTTTTCCGCCCCAGCTTTCAGGATTATCCCTTAGTA 3400005-3400044 ATCGGATGCAGGCAGGGGAAGTGTCTGTTTACCCTGCCTG mreBCD mreBCD mreBp3 3401356 reverse mreB(3400044,3401087) mreD(3398387,3398875) 3398387-3401356 3401087-3401356 GCGCTGCGTCTCATGGGAGTGTGCTTGTCTGCTCGCCAGATTGTTGCAGCACATATGCAGATGAATGACCTTACGCGGTTGCAAACAGGCGAGGAATGCTGCTGATGCATTAAGCCTTTCTGGACTCAGGCAGAGATTTGTAACAAAGGAAACGAACTGCACTAATTTTCACCGTAGCAGATGATTTTTGCGCCTTGTCGCTGCTGCGTGTGGTTGGTAAAGTAAGCGGATTTTCTTTTCCGCCCCAGCTTTCAGGATTATCCCTTAGTA mreBCD mreB mreBp3 3401356 reverse mreB(3400044,3401087) mreB(3400044,3401087) rho-independent(3400005,3400036) 3400005-3401356 3401087-3401356 GCGCTGCGTCTCATGGGAGTGTGCTTGTCTGCTCGCCAGATTGTTGCAGCACATATGCAGATGAATGACCTTACGCGGTTGCAAACAGGCGAGGAATGCTGCTGATGCATTAAGCCTTTCTGGACTCAGGCAGAGATTTGTAACAAAGGAAACGAACTGCACTAATTTTCACCGTAGCAGATGATTTTTGCGCCTTGTCGCTGCTGCGTGTGGTTGGTAAAGTAAGCGGATTTTCTTTTCCGCCCCAGCTTTCAGGATTATCCCTTAGTA 3400005-3400044 ATCGGATGCAGGCAGGGGAAGTGTCTGTTTACCCTGCCTG accBC accBC accBp1 3405140 forward accB(3405436,3405906) accC(3405917,3407266) rho-independent(3407286,3407302) 3405140-3407302 3405140-3405436 CCAATTGCTACGAAATCGTTATAATGTGCGACCTCGTCCTCCCTGACGCAGTTTTTGCGCTGCGGAAAAGGTGACATTGGCGCAACGAAGGTATATTTTGTTTTTTGCCGGAGGATAGCAGCAGATCGCTGCACAATGTCCGTCAAGTCTAACATTGACACTCTGGGGCAAAATAGACCGGCGTCCCGGCCTGCTGGAATTTATCGCTATGCATACAGCTGTCGGGGCATACGCTTTACAGACGGCGGTGAAACGCCTGTCACAATCACACTAAACAAAGAGTACGGAACCCACTCA 3407266-3407302 AGACTGCTAAAGCGTCAAAAGGCCGGATTTTCCGGCC accBC accBC accBp2 3405172 forward accB(3405436,3405906) accC(3405917,3407266) rho-independent(3407286,3407302) 3405172-3407302 3405172-3405436 CTCGTCCTCCCTGACGCAGTTTTTGCGCTGCGGAAAAGGTGACATTGGCGCAACGAAGGTATATTTTGTTTTTTGCCGGAGGATAGCAGCAGATCGCTGCACAATGTCCGTCAAGTCTAACATTGACACTCTGGGGCAAAATAGACCGGCGTCCCGGCCTGCTGGAATTTATCGCTATGCATACAGCTGTCGGGGCATACGCTTTACAGACGGCGGTGAAACGCCTGTCACAATCACACTAAACAAAGAGTACGGAACCCACTCA 3407266-3407302 AGACTGCTAAAGCGTCAAAAGGCCGGATTTTCCGGCC yhdT-panF-prmA yhdT-panF-prmA yhdTp 3407351 forward yhdT(3407375,3407617) prmA(3409070,3409951) rho-independent(3410029,3410042) 3407351-3410042 3407351-3407375 TTCTTCACCCATCAGGGACAAAAAA 3409951-3410042 ACCTTCGCATCGCCGTAGGGTGACGCGGGGCGAAGTGCGAGCAAGCTCACAAAAGGCACGTAAATTTGCCGATTATTTACGCAAATTTGCGT dusB-fis dusB-fis dusBp 3410246 forward dusB(3410280,3411245) fis(3411271,3411567) rho-independent(3411593,3411626) 3410246-3411626 3410246-3410280 GCCTTGCAGTCACAGTATGGTCATTTCTTAACTCA 3411567-3411626 ATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTT acrEF acrEF acrEp 3413702 forward acrE(3413864,3415021) acrF(3415033,3418137) rho-independent(3418143,3418177) 3413702-3418177 3413702-3413864 TCTTTTTTTGTGTTTATGTGCCTTGAGATGCCTGTATTCATAACTATTCCTTACATCGACGAATGATAATTTGTAGGATAGCGAACTGTATTTTTCTTTCTGCGAGTTAACGCGTTGCCTTTTTGGGTAAATAACGCGCTTTTGGTTTTTTGAGGAATAGTAA 3418137-3418177 AATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTT yhdWXYZ yhdWXYZ yhdWp 3418972 forward yhdW(3419042,3420066) yhdZ(3422436,3423194) 3418972-3423194 3418972-3419042 TGGCCACAGACAGGTAAAAGACGTTTCCCAAACGTCCTATAACGATAATTTTCGCCTCACAGGAAGCATTA rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF rrsDp2 3428940 reverse rrsD(3427221,3428762) rrfF(3423423,3423542) rho-independent(3423371,3423425) 3423371-3428940 3428762-3428940 CCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 3423371-3423423 TCAAATAAAACAAAAGGCTCAGTCGGAAGACTGGGCCTTTTGTTTTATCTGTT rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF rrsDp1 3429047 reverse rrsD(3427221,3428762) rrfF(3423423,3423542) rho-independent(3423371,3423425) 3423371-3429047 3428762-3429047 GTTGAGACGACAACGTGAAACACTTCACAGGATGGTCGGAACAACGAAGAGAAAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 3423371-3423423 TCAAATAAAACAAAAGGCTCAGTCGGAAGACTGGGCCTTTTGTTTTATCTGTT rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF rrsDp 3429047 reverse rrsD(3427221,3428762) rrfF(3423423,3423542) rho-independent(3423371,3423425) 3423371-3429047 3428762-3429047 GTTGAGACGACAACGTGAAACACTTCACAGGATGGTCGGAACAACGAAGAGAAAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGAGCTGAAAGCCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 3423371-3423423 TCAAATAAAACAAAAGGCTCAGTCGGAAGACTGGGCCTTTTGTTTTATCTGTT def-fmt def-fmt defp 3433650 forward def(3433690,3434199) fmt(3434214,3435161) 3433650-3435161 3433650-3433690 AAATAATCTTTCTAACTCCTGAACACATCTCTGGAGATTTA smf smf smfp 3433686 reverse smf(3432436,3433560) smf(3432436,3433560) 3432436-3433686 3433560-3433686 TCTCCAGAGATGTGTTCAGGAGTTAGAAAGATTATTTCTTCTATTCTAGACAAATCCCCCTCTGATTGACAGCATCACTGACCAATCGCAAAGATTGCTAAGGCTGCTTATGGCAGGGAGATAAGGA mscL mscL mscLp 3438001 forward mscL(3438024,3438434) mscL(3438024,3438434) 3438001-3438434 3438001-3438024 GTCGGCTTCATAGGGAGAATAACA arfA arfA arfAp3 3438673 reverse arfA(3438431,3438649) arfA(3438431,3438649) rho-independent(3438444,3438504) 3438444-3438673 3438649-3438673 GTTAAATAACCAACTGGAGTTTTTA yhdN-zntR yhdN-zntR yhdNp 3439546 reverse yhdN(3439141,3439509) zntR(3438705,3439130) 3438705-3439546 3439509-3439546 ATAGCTGTACTCTTTTTGTTCATCCCCTGGAGTATTTA rpsMKD-rpoA-rplQ rpsMKD-rpoA-rplQ rpsMp1 3442495 reverse rpsM(3442115,3442471) rplQ(3439616,3439999) rho-independent(3439581,3439595) 3439581-3442495 3442471-3442495 CATATTAAATAGTAGGAGTGCATAG 3439581-3439616 ATCTGAAGCAACGTAAAAAAACCCGCCCCGGCGGGT rpsMKD-rpoA-rplQ rpsMKD-rpoA-rplQ rpsMp2 3442565 reverse rpsM(3442115,3442471) rplQ(3439616,3439999) rho-independent(3439581,3439595) 3439581-3442565 3442471-3442565 GCCAATCTTTTGTATGTCTGTGCGTTTCCATTTGAGTATCCTGAAAACGGGCTTTTCAGCATGGAACGTACATATTAAATAGTAGGAGTGCATAG 3439581-3439616 ATCTGAAGCAACGTAAAAAAACCCGCCCCGGCGGGT rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ rplNp 3448222 reverse rplN(3447778,3448149) rpmJ(3442618,3442734) 3442618-3448222 3448149-3448222 GCCCTCGATATGGGGATTTTTAACGACCTGATTTTCGGGTCTCAGTAGTAGTTGACATTAGCGGAGCACTAAAA rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ rpsJp 3453442 reverse rpsJ(3452959,3453270) rpsQ(3448314,3448568) rho-independent(3448267,3448285) 3448267-3453442 3453270-3453442 GGCTTGTCGTAGTTGACAGCAGGTTCAATCTGAACCTCAGTTAGCCGAATTTGGCTACCTAACAATGCTCCCAATCGGGGAGCTACGTAAGAACGGTTACACTCTCCCATCAATCGTAATGGGTCTGAGGAGTAATCATTTTCGTTTATAAAATAATTGGAGCTCTGGTCTCA 3448267-3448314 ATACAGTACACTCTCTCAATACGAATAAACGGCTCAGAAATGAGCCGT rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ rpsJp 3453442 reverse rpsJ(3452959,3453270) rpsQ(3448314,3448568) rho-independent(3453298,3453358) 3453298-3453442 3453270-3453442 GGCTTGTCGTAGTTGACAGCAGGTTCAATCTGAACCTCAGTTAGCCGAATTTGGCTACCTAACAATGCTCCCAATCGGGGAGCTACGTAAGAACGGTTACACTCTCCCATCAATCGTAATGGGTCTGAGGAGTAATCATTTTCGTTTATAAAATAATTGGAGCTCTGGTCTCA gspCDEFGHIJKLMO gspCDEFGHIJKLMO gspCp1 3455482 forward gspC(3455578,3456393) gspO(3465543,3466220) 3455482-3466220 3455482-3455578 AAATAAATTTTGCTTGATTCATGCAAGCGGCATTAATACTATTTATACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCG gspAB gspAB gspAp3 3455495 reverse gspA(3453929,3455398) gspB(3453508,3453927) 3453508-3455495 3455398-3455495 AGCAAAATTTATTTATATTAGTAATATGTATTTAATTAATAAATACATACATTATTTTTATGATTAAGGATAATCAATAATTAAAACAGGAAGTTCTA gspAB gspAB gspAp2 3455510 reverse gspA(3453929,3455398) gspB(3453508,3453927) 3453508-3455510 3455398-3455510 CGCTTGCATGAATCAAGCAAAATTTATTTATATTAGTAATATGTATTTAATTAATAAATACATACATTATTTTTATGATTAAGGATAATCAATAATTAAAACAGGAAGTTCTA gspAB gspAB gspAp1 3455519 reverse gspA(3453929,3455398) gspB(3453508,3453927) 3453508-3455519 3455398-3455519 TATTAATGCCGCTTGCATGAATCAAGCAAAATTTATTTATATTAGTAATATGTATTTAATTAATAAATACATACATTATTTTTATGATTAAGGATAATCAATAATTAAAACAGGAAGTTCTA gspCDEFGHIJKLMO gspCDEFGHIJKLMO gspCp2 3455527 forward gspC(3455578,3456393) gspO(3465543,3466220) 3455527-3466220 3455527-3455578 TACTAACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCG gspCDEFGHIJKLMO gspCDEFGHIJKLMO gspCp3 3455531 forward gspC(3455578,3456393) gspO(3465543,3466220) 3455531-3466220 3455531-3455578 AACGTCAATATACAACCCACCCAATCTATTTTATTAGAACATACATCG gspAB gspAB gspAp4 3455634 reverse gspA(3453929,3455398) gspB(3453508,3453927) 3453508-3455634 3455398-3455634 GATGGCAGCATCTTTATTATGATTCGCCAGATGGAAGGGGAAACGTAGTGTGGGCACGATGTATGTTCTAATAAAATAGATTGGGTGGGTTGTATATTGACGTTAGTATAAATAGTATTAATGCCGCTTGCATGAATCAAGCAAAATTTATTTATATTAGTAATATGTATTTAATTAATAAATACATACATTATTTTTATGATTAAGGATAATCAATAATTAAAACAGGAAGTTCTA chiA chiA chiAp 3469896 reverse chiA(3467160,3469853) chiA(3467160,3469853) 3467160-3469896 3469853-3469896 GTAGGACTTTTGTTTTGCAGTTTTTACGTCACAAGGGATTATAA rpsLG-fusA-tufA tufA tufAp2 3471583 reverse tufA(3470145,3471329) tufA(3470145,3471329) 3470145-3471583 3471329-3471583 TCAGGAATCTGAAGTTACTGGCGTTAAGATCCACGCTGAAGTACCGCTGTCTGAAATGTTCGGATACGCAACTCAGCTGCGTTCTCTGACCAAAGGTCGTGCATCATACACTATGGAATTCCTGAAGTATGATGAAGCGCCGAGTAACGTTGCTCAGGCCGTAATTGAAGCCCGTGGTAAATAAGCCTAAGGGTTAATACCAAAGTCCCGTGCTCTCTCCTGAAGGGGAGAGCACTATAGTAAGGAATATAGCCG rpsLG-fusA-tufA tufA tufAp1 3471724 reverse tufA(3470145,3471329) tufA(3470145,3471329) 3470145-3471724 3471329-3471724 TTCTATCGCCTTTAAAGAAGGCTTTAAGAAAGCGAAACCAGTTCTGCTTGAGCCGATCATGAAGGTTGAAGTAGAAACTCCGGAAGAGAACACCGGTGACGTTATCGGTGACTTGAGCCGTCGTCGTGGTATGCTCAAAGGTCAGGAATCTGAAGTTACTGGCGTTAAGATCCACGCTGAAGTACCGCTGTCTGAAATGTTCGGATACGCAACTCAGCTGCGTTCTCTGACCAAAGGTCGTGCATCATACACTATGGAATTCCTGAAGTATGATGAAGCGCCGAGTAACGTTGCTCAGGCCGTAATTGAAGCCCGTGGTAAATAAGCCTAAGGGTTAATACCAAAGTCCCGTGCTCTCTCCTGAAGGGGAGAGCACTATAGTAAGGAATATAGCCG rpsLG-fusA-tufA fusA-tufA fusAp 3473685 reverse fusA(3471400,3473514) tufA(3470145,3471329) 3470145-3473685 3473514-3473685 ACTGCAGTTAAGAAACGTGAAGACGTTCACCGTATGGCCGAAGCCAACAAGGCGTTCGCACACTACCGTTGGTTATCCCTTCGGAGTTTTAGTCACCAGGCGGGCGCTTCCAGTAAGCAGCCCGCTTTGGGCTACTTAAATTGAACGCCTAAAAGATAAACGAGGAAACAAA rpsLG-fusA-tufA rpsLG-fusA-tufA rpsLp 3474621 reverse rpsL(3474178,3474552) tufA(3470145,3471329) 3470145-3474621 3474552-3474621 GTCCTCATATTGTGTGAGGACGTTTTATTACGTGTTTACGAAGCAAAAGCTAAAACCAGGAGCTATTTAA yheO-tusDCB yheO-tusDCB yheOp1 3476506 reverse yheO(3475718,3476440) tusB(3474678,3474965) 3474678-3476506 3476440-3476506 CCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTGTTTTTTTTCA yheO-tusDCB yheO-tusDCB yheOp2 3476541 reverse yheO(3475718,3476440) tusB(3474678,3474965) 3474678-3476541 3476440-3476541 GGAAAGCGGAACCTCCGCTGTATTAATTTAGTTACCCGCATCATTAATGAGCCTGCCCTGAAAAGTTAACGACAGGCTCCTGAAAAGGAGTGTTTTTTTTCA fkpA fkpA fkpAp2 3477499 reverse fkpA(3476607,3477419) fkpA(3476607,3477419) 3476607-3477499 3477419-3477499 GATTTGTTCGACAACGCTTTATAGTACCCTTCTGATAATAGTTAACCCTGGGGTGAGATGCCCCGATCCTGGAGATATGGA fkpA fkpA fkpAp1 3477525 reverse fkpA(3476607,3477419) fkpA(3476607,3477419) 3476607-3477525 3477419-3477525 ATGATAATAGGGCGTGTCTGTATGTAGATTTGTTCGACAACGCTTTATAGTACCCTTCTGATAATAGTTAACCCTGGGGTGAGATGCCCCGATCCTGGAGATATGGA prkB prkB prkBp 3484311 forward prkB(3484490,3485359) prkB(3484490,3485359) 3484311-3485359 3484311-3484490 GAGCGTACACTTGAACAGAAAGTCGCCGACGTCAAACGCCAGCTACAGTGCGGAGAAGCGGTGCTGGTATGGTCGGAGCTGCACGAAACGGTCAATATTATGCCGCGCAGTCAGTTTCGCGAATAACCTGCAACCGTCGGCGGACGAGATAATAATGATAGCTAAGTCATGGAGTTACTA yhfA yhfA yhfAp 3485951 reverse yhfA(3485414,3485818) yhfA(3485414,3485818) 3485414-3485951 3485818-3485951 TGACTGTTTTAGCATAGCTTTCGCTTTGTGTCTCCTGGTGTCTCGCTTCAGCATGACCCAGGTCGCCTTCCGTTGCGCGATTTGGTTAGTACGCGTACTCTGTCAGGAAAATTGACGCAGTGGAGTAGCAAAAA crp crp crpp1 3485953 forward crp(3486120,3486752) crp(3486120,3486752) rho-independent(3486760,3486792) 3485953-3486792 3485953-3486120 GATGCTACAGTAATACATTGATGTACTGCATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCA 3486752-3486792 ATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTT crp crp crpp3 3486025 forward crp(3486120,3486752) crp(3486120,3486752) rho-independent(3486760,3486792) 3486025-3486792 3486025-3486120 GCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCA 3486752-3486792 ATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTT crp crp crpp2 3486031 forward crp(3486120,3486752) crp(3486120,3486752) rho-independent(3486760,3486792) 3486031-3486792 3486031-3486120 TCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCA 3486752-3486792 ATCCCGTCGGAGTGGCGCGTTACCTGGTAGCGCGCCATTTT argD argD argDp 3490221 reverse argD(3488960,3490180) argD(3488960,3490180) 3488960-3490221 3490180-3490221 ATAATTTCACATTTGTTTATGCGTAACAGGGTGATCATGAGA yhfG-fic-pabA pabA pabAp 3490851 reverse pabA(3490266,3490829) pabA(3490266,3490829) 3490266-3490851 3490829-3490851 GTTCTTTTGTACCGGAGCCGCCA yhfG-fic-pabA yhfG-fic-pabA yhfGp 3491648 reverse yhfG(3491453,3491620) pabA(3490266,3490829) 3490266-3491648 3491620-3491648 CAAATGGACACGTTCAGGGAGGCATCAAG ppiA ppiA ppiAp1 3492335 reverse ppiA(3491725,3492297) ppiA(3491725,3492297) 3491725-3492335 3492297-3492335 ACTTGCTTTTTTTCTGCTCTGTTTGTTAAGGAAATCTCA ppiA ppiA ppiAp2 3492395 reverse ppiA(3491725,3492297) ppiA(3491725,3492297) 3491725-3492395 3492297-3492395 AGATACGTAAAATTAGGTAAAGGGATGGCCTTGTTCTTGAAGGCTATTTAGAATCTCTTCACTTGCTTTTTTTCTGCTCTGTTTGTTAAGGAAATCTCA ppiA ppiA ppiAp3 3492430 reverse ppiA(3491725,3492297) ppiA(3491725,3492297) 3491725-3492430 3492297-3492430 GGAATAAAAAGTGATCGTCAGGTTACATATATTTCAGATACGTAAAATTAGGTAAAGGGATGGCCTTGTTCTTGAAGGCTATTTAGAATCTCTTCACTTGCTTTTTTTCTGCTCTGTTTGTTAAGGAAATCTCA ppiA ppiA ppiAp4 3492449 reverse ppiA(3491725,3492297) ppiA(3491725,3492297) 3491725-3492449 3492297-3492449 AAGAGGTGATTTTGATCACGGAATAAAAAGTGATCGTCAGGTTACATATATTTCAGATACGTAAAATTAGGTAAAGGGATGGCCTTGTTCTTGAAGGCTATTTAGAATCTCTTCACTTGCTTTTTTTCTGCTCTGTTTGTTAAGGAAATCTCA tsgA tsgA tsgAp 3492519 forward tsgA(3492568,3493749) tsgA(3492568,3493749) 3492519-3493749 3492519-3492568 CTCGCGGCATATCCCGCTATGCCATTTTATTTTTGAACGCAGGCCAATCA nirBDC-cysG nirBDC-cysG nirBp 3493987 forward nirB(3494011,3496554) cysG(3497828,3499201) 3493987-3499201 3493987-3494011 AATAGAAAAGAAATCGAGGCAAAAA nirBDC-cysG cysG cysGp1 3497754 forward cysG(3497828,3499201) cysG(3497828,3499201) 3497754-3499201 3497754-3497828 AAGCGAATCGTCCGGTTGCGGACAAATTTAATCAAACTGAAACGGCTGCCGGTTAATTACTAAGGGGTTTTTACG nirBDC-cysG cysG cysGp2 3497793 forward cysG(3497828,3499201) cysG(3497828,3499201) 3497793-3499201 3497793-3497828 AAACGGCTGCCGGTTAATTACTAAGGGGTTTTTACG frlABCDR frlABCDR frlAp1 3499835 forward frlA(3499910,3501247) frlR(3504052,3504783) 3499835-3504783 3499835-3499910 ATGCATTGTCATGTTACCTTTTAAATGACTGCAAACTCTCCCCTACAACGTATTGGACAAGAAAAAGGTATCGCTA frlABCDR frlR frlRp2 3504033 forward frlR(3504052,3504783) frlR(3504052,3504783) 3504033-3504783 3504033-3504052 CTTTATTTCAGGGTCGATTA frlABCDR frlR frlRp1 3504043 forward frlR(3504052,3504783) frlR(3504052,3504783) 3504043-3504783 3504043-3504052 GGGTCGATTA aroKB-damX-dam-rpe-gph-trpS trpS trpSp 3513697 reverse trpS(3512634,3513638) trpS(3512634,3513638) 3512634-3513697 3513638-3513697 TATAAATGACCTTCTGCCCGCATTAGGGCTTCCGCATAGCGAAAATCAGGAATCGAAAAA aroKB-damX-dam-rpe-gph-trpS rpe-gph-trpS rpep 3515153 reverse rpe(3514382,3515059) trpS(3512634,3513638) 3512634-3515153 3515059-3515153 ACGGCGGCACACGTAAAAAGGTGGACGAACTGCTGGCTTTGTACAAACCAGGAGTCGTTTCACCCGCGAAAAAATAATTCTCAAGGAGAAGCGGA aroKB-damX-dam-rpe-gph-trpS dam-rpe-gph-trpS damp2 3515982 reverse dam(3515077,3515913) trpS(3512634,3513638) 3512634-3515982 3515913-3515982 GTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCA aroKB-damX-dam-rpe-gph-trpS dam-rpe-gph-trpS damp1 3516252 reverse dam(3515077,3515913) trpS(3512634,3513638) 3512634-3516252 3515913-3516252 TGAGCAGTTCCTCTAACTACGACAACCTGAACGGTTGGGCGAAGAAAGAGAATCTGAAAAACTACGTTGTCTATGAAACGACGCGTAATGGTCAGCCGTGGTATGTCCTGGTTTCTGGCGTGTACGCTTCGAAAGAAGAGGCGAAAAAAGCGGTATCTACATTGCCAGCAGATGTCCAGGCCAAAAACCCGTGGGCGAAACCGCTGCGTCAGGTACAGGCCGATCTGAAGTAATCAAGGTTATCTCCCGCAATGGTTTATCGTTGCGGGAGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCA aroKB-damX-dam-rpe-gph-trpS damX-dam-rpe-gph-trpS damXp 3517600 reverse damX(3516020,3517306) trpS(3512634,3513638) 3512634-3517600 3517306-3517600 TGCTCAAGCGGGCTGGGTTACCGGTCAATGGGCCGCGCGAAATGTCCGCGCAGGCGTATTTACCGCATATGCTGCGTGACAAGAAAGTCCTTGCGGGAGAGATGCGCTTAATTCTTCCGTTGGCAATTGGTAAGAGTGAAGTTCGCAGCGGCGTTTCGCACGAGCTTGTTCTTAACGCCATTGCCGATTGTCAATCAGCGTAACAACAAGAAAGGTCAGGCCGCTTATCAAGCGGTCTATTAGCTTCAGGTTAATTGCAACGTGGTAAGCATTAACCTTTTAGTGGGGTGTTAAA aroKB-damX-dam-rpe-gph-trpS aroKB-damX-dam-rpe-gph-trpS aroKp2 3519167 reverse aroK(3518543,3519064) trpS(3512634,3513638) 3512634-3519167 3519064-3519167 TCTGACTCTCGCAATATCTTATGAGGTTTCAGTTCATGTCCTGCGGCGCTCTCTGAGCGAAGCGGGTTTATCATTAACGAATAGTCTTAGTAGTACCGAAAAAA aroKB-damX-dam-rpe-gph-trpS aroKB-damX-dam-rpe-gph-trpS aroKp1 3519380 reverse aroK(3518543,3519064) trpS(3512634,3513638) 3512634-3519380 3519064-3519380 GATTTGAGAGTTGGTGCTCTTCGCTGCCTGCGTTCCATGATGATGATTTATCATTCAGGCGGCATTTTGCTGTCTTTTTTACGCTAATCTTACCCGGTGATTTATCGCCAGAGCGGTGGTAGCAAGGCAGCGCGCTTGCAGCGACCAGATATGCAGAGGGATGGGTGATTTATTCAGTTGCCAAACCCGCTGGAGTATTGAGATAATTTTCAGTCTGACTCTCGCAATATCTTATGAGGTTTCAGTTCATGTCCTGCGGCGCTCTCTGAGCGAAGCGGGTTTATCATTAACGAATAGTCTTAGTAGTACCGAAAAAA mrcA mrcA mrcAp 3522826 forward mrcA(3522871,3525423) mrcA(3522871,3525423) rho-independent(3525426,3525448) 3522826-3525448 3522826-3522871 GTTTGTTTATAAACTGCCCAAATGAAACTAAATGGGAAATTTCCAG 3525423-3525448 ATTAAAAAGGCGCTTCGGCGCCTTTT hofMNOP hofMNOP hofMp 3522928 reverse hofM(3521972,3522751) hofP(3520615,3521019) 3520615-3522928 3522751-3522928 CTGCTCCCAGCAGAATGCAACAGACTGCAAGGATCAAAAAATACTTTACGAACTTCACTGGAAATTTCCCATTTAGTTTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGACGCATTGATATACCCGTCAGAGTGACGGGTGATAAGGAGATCATCACAA yrfG-hslRO hslR-hslO hslRp 3529110 forward hslR(3529348,3529749) hslO(3529774,3530652) 3529110-3530652 3529110-3529348 CCGAAAGAGGATCAGCGGTTATGGCATGCGGTGGCCGAAGCTACGGGTCTGAAAGCTGAAAGAACGCTGTTTATTGATGACAGCGAAGCGATTCTCGATGCTGCCGCGCAATTTGGTATTCGTTACTGCCTCGGCGTGACTAATCCTGATTCCGGGATTGCCGAGAAACAGTATCAACGCCATCCGTCACTGAATGACTACCGCCGCCTGATCCCCTCGCTAATGTGAAGGAGACGCCA pck pck pckp 3532679 forward pck(3532818,3534440) pck(3532818,3534440) 3532679-3534440 3532679-3532818 CGTTTCGTGACAGGAATCACGGAGTTTTTTGTCAAATATGAATTTCTCCAGATACGTAAATCTATGAGCCTTGTCGCGGTTAACACCCCCAAAAAGACTTTACTATTCAGGCAATACATATTGGCTAAGGAGCAGTGAAA ompR-envZ ompR-envZ ompRp3 3536639 reverse ompR(3535865,3536584) envZ(3534516,3535868) rho-independent(3534473,3534527) 3534473-3536639 3536584-3536639 GCTTTTTTAAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAA 3534473-3534516 AATAAACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAG ompR-envZ ompR-envZ ompRp2 3536685 reverse ompR(3535865,3536584) envZ(3534516,3535868) rho-independent(3534473,3534527) 3534473-3536685 3536584-3536685 AATTTAGGCTGAAATTCATACCAGATTTAGCTGGTGACGAACGTGAGCTTTTTTAAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAA 3534473-3534516 AATAAACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAG ompR-envZ ompR-envZ ompRp1 3536707 reverse ompR(3535865,3536584) envZ(3534516,3535868) rho-independent(3534473,3534527) 3534473-3536707 3536584-3536707 GCTGTTTAATATGCTTTGTAACAATTTAGGCTGAAATTCATACCAGATTTAGCTGGTGACGAACGTGAGCTTTTTTAAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAA 3534473-3534516 AATAAACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAG ompR-envZ ompR-envZ ompRp4 3536755 reverse ompR(3535865,3536584) envZ(3534516,3535868) rho-independent(3534473,3534527) 3534473-3536755 3536584-3536755 ATCAACAGAATCAATAATGTTTCGCCGAATAAATTGTATACTTAAGCTGCTGTTTAATATGCTTTGTAACAATTTAGGCTGAAATTCATACCAGATTTAGCTGGTGACGAACGTGAGCTTTTTTAAGAATACACGCTTACAAATTGTTGCGAACCTTTGGGAGTACAAACAA 3534473-3534516 AATAAACGGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAG feoABC feoABC feoAp 3540057 forward feoA(3540163,3540390) feoC(3542728,3542964) 3540057-3542964 3540057-3540163 TGTTGATTATTTAATCTCTCCTTTGTTGGCAAATCATCTGGTCTCATGTCGCTGTCAAACGCCCCATGAGGTAGTTATCCAGTTAATGAGAAACAAGTAGGCACCTA yhgH-nfuA gntXY gntXp 3544667 forward yhgH(3544882,3545565) nfuA(3545624,3546199) 3544667-3546199 3544667-3544882 ACAGCGCACCAAATCCCCGGCTACGCCCGAAGCCGGGCAGGTCAACAAGGTGCAGCGTAAAATGCGAGCTAAGTTCCTCGTCAATGCAACGCCACACTTCGGCATTCAGTCCCCATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATA bioH bioH bioHp 3544858 reverse bioH(3544074,3544844) bioH(3544074,3544844) 3544074-3544858 3544844-3544858 GAGAACAATAGCGGA yhgH-nfuA nfuA nfuAp2 3545458 forward nfuA(3545624,3546199) nfuA(3545624,3546199) 3545458-3546199 3545458-3545624 GTGGATGATGTCGTTACCACCGGAAGTACCGTCGCAGAGATTGCGCAGTTGCTTTTACGCAATGGTGCGGCGGCTGTCCAGGTCTGGTGCCTTTGTCGAACCTTGTAGAGCCTCGATGATGGGCGTATTATAACCAACTAAAATAGTCAACTATTAGGCCATTACTA yhgH-nfuA nfuA nfuAp1 3545596 forward nfuA(3545624,3546199) nfuA(3545624,3546199) 3545596-3546199 3545596-3545624 TAAAATAGTCAACTATTAGGCCATTACTA gntT gntT gntTp1 3546405 forward gntT(3546559,3547875) gntT(3546559,3547875) 3546405-3547875 3546405-3546559 GGGTACCAAACATACTCCTGACATCTGACTACAATAATTAGTTTTAGTGGGTATCAGTCGTGGTGCCGCAATATCTCTGTTCCCGATTGGGATAATTAGAGTTTGTCGTCAGAAAATTGACGTTACCCATAACAAATGAAAGGCCAGGTAAATCA gntT gntT gntTp2 3546446 forward gntT(3546559,3547875) gntT(3546559,3547875) 3546446-3547875 3546446-3546559 TTTTAGTGGGTATCAGTCGTGGTGCCGCAATATCTCTGTTCCCGATTGGGATAATTAGAGTTTGTCGTCAGAAAATTGACGTTACCCATAACAAATGAAAGGCCAGGTAAATCA gntT gntT gntTp3 3546449 forward gntT(3546559,3547875) gntT(3546559,3547875) 3546449-3547875 3546449-3546559 TAGTGGGTATCAGTCGTGGTGCCGCAATATCTCTGTTCCCGATTGGGATAATTAGAGTTTGTCGTCAGAAAATTGACGTTACCCATAACAAATGAAAGGCCAGGTAAATCA malPQ malQ malQp 3550399 reverse malQ(3547986,3550070) malQ(3547986,3550070) 3547986-3550399 3550070-3550399 ACGACCCGGTGAAATGGCGGAAGAAAGATAAGGTGCTGGACGCAGTATTGAAAGAGCTGGAAAGCGGTAAATACAGCGACGGCGATAAGCATGCCTTCGACCAGATGCTGCACAGTATCGGCAAACAGGGCGGCGATCCGTATCTGGTGATGGCGGATTTCGCAGCCTATGTAGAGGCACAAAAGCAGGTGGATGTGCTGTACCGCGACCAGGAGGCCTGGACTCGCGCGGCGATCCTCAATACCGCCCGCTGCGGTATGTTTAGCTCGGATCGCTCTATTCGCGATTATCAGGCTCGTATCTGGCAGGCAAAACGCTAAGGAAGCTCGA malPQ malPQ malPp 3552510 reverse malP(3550080,3552473) malQ(3547986,3550070) 3547986-3552510 3552473-3552510 AACGTTGTGTTGAAAATCTAAGAAAAGTGGAACTCCTA malT malT malTp 3553024 forward malT(3553085,3555790) malT(3553085,3555790) rho-independent(3555795,3555820) 3553024-3555820 3553024-3553085 ATTAATTACGAAGCGCAAAAAAAATAATATTTCCTCATTTTCCACAGTGAAGTGATTAACTA 3555790-3555820 AGTTTAGCCGGATAACGCGCCAGATCCGGCT rtcBA rtcBA rtcBp 3558107 reverse rtcB(3556853,3558079) rtcA(3555833,3556849) 3555833-3558107 3558079-3558107 CAGCAAACAACGAAAAGAGAAAAACAAAA glpEGR glpR glpRp2 3560756 reverse glpR(3559848,3560605) glpR(3559848,3560605) rho-independent(3559754,3559831) 3559754-3560756 3560605-3560756 GCGCTGATCTGGATTGTCGCCGGATGGTTTGATTTGTTTGGGATGTCGATGGCGAACGGAGCACACATCGCCGGGTTAGCCGTGGGTTTAGCGATGGCTTTTGTTGATTCGCTCAATGCGCGAAAACGAAAATAATTCCAGGGATTTATAAA 3559754-3559848 ATCCTGCACGGCTTCCCACGTCAGACCAAAACGCGCCAGGTATTTGCGTAGCCGATCCGCGTCATTGACGCTGGCTTTGCCCTGGCGCGAAACGT glpEGR glpR glpRp1 3560891 reverse glpR(3559848,3560605) glpR(3559848,3560605) rho-independent(3559754,3559831) 3559754-3560891 3560605-3560891 GTGCAGCAAAAATTCAGCGGGCCGTGGTTTGGCGGGCTTTCTGGCGTGGTGTATGCGCTGATGGGCTACGTCTGGCTACGTGGCGAACGCGATCCGCAAAGTGGCATTTACCTGCAACGTGGGTTAATTATCTTTGCGCTGATCTGGATTGTCGCCGGATGGTTTGATTTGTTTGGGATGTCGATGGCGAACGGAGCACACATCGCCGGGTTAGCCGTGGGTTTAGCGATGGCTTTTGTTGATTCGCTCAATGCGCGAAAACGAAAATAATTCCAGGGATTTATAAA 3559754-3559848 ATCCTGCACGGCTTCCCACGTCAGACCAAAACGCGCCAGGTATTTGCGTAGCCGATCCGCGTCATTGACGCTGGCTTTGCCCTGGCGCGAAACGT glpEGR glpGR glpGp 3561480 reverse glpG(3560622,3561452) glpR(3559848,3560605) rho-independent(3559754,3559831) 3559754-3561480 3561452-3561480 CTTTTGTGTGGAATAAGCGACAGCAACGA 3559754-3559848 ATCCTGCACGGCTTCCCACGTCAGACCAAAACGCGCCAGGTATTTGCGTAGCCGATCCGCGTCATTGACGCTGGCTTTGCCCTGGCGCGAAACGT glpEGR glpEGR glpEp 3561849 reverse glpE(3561497,3561823) glpR(3559848,3560605) rho-independent(3559754,3559831) 3559754-3561849 3561823-3561849 ACTTGTTTGTAAAGAAAGAGAGACGCA 3559754-3559848 ATCCTGCACGGCTTCCCACGTCAGACCAAAACGCGCCAGGTATTTGCGTAGCCGATCCGCGTCATTGACGCTGGCTTTGCCCTGGCGCGAAACGT glpD glpD glpDp 3561971 forward glpD(3562013,3563518) glpD(3562013,3563518) 3561971-3563518 3561971-3562013 AACGAACATTTATGAGCTTTAACGAAAGTGAATGAGGGCAGCA glgBXCAP glgAP glgAp 3568392 reverse glgA(3566600,3568033) glgP(3564134,3566581) rho-independent(3564082,3564136) 3564082-3568392 3568033-3568392 TTACCGCCAGCGAAATTCGTGCAGGATCGCTCCGGTAGCCACGGGATGACCCTTAACTCACTGGTTTCCGGCGGTTGTGTGATCTCCGGTTCGGTGGTGGTGCAGTCCGTTCTGTTCTCGCGCGTTCGCGTGAATTCATTCTGCAACATTGATTCCGCCGTATTGTTACCGGAAGTATGGGTAGGTCGCTCGTGCCGTCTGCGCCGCTGCGTCATCGATCGTGCTTGTGTTATTCCGGAAGGCATGGTGATTGGTGAAAACGCAGAGGAAGATGCACGTCGTTTCTATCGTTCAGAAGAAGGCATCGTGCTGGTAACGCGCGAAATGCTACGGAAGTTAGGGCATAAACAGGAGCGATAA 3564082-3564134 AGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTTTTTTCCGCCATCA glgBXCAP glgCAP glgCp1 3569389 reverse glgC(3568033,3569328) glgP(3564134,3566581) rho-independent(3564082,3564136) 3564082-3569389 3569328-3569389 TCTGGCAGGGACCTGCACACGGATTGTGTGTGTTCCAGAGATGATAAAAAAGGAGTTAGTCA 3564082-3564134 AGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTTTTTTCCGCCATCA glgBXCAP glgCAP glgCp2 3569455 reverse glgC(3568033,3569328) glgP(3564134,3566581) rho-independent(3564082,3564136) 3564082-3569455 3569328-3569455 TACCTGCTGGGGAGTGGCACGCCATTCCCCCATTCGCTGGAGAGGATAACCCAGTGATTACGGCTGTCTGGCAGGGACCTGCACACGGATTGTGTGTGTTCCAGAGATGATAAAAAAGGAGTTAGTCA 3564082-3564134 AGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTTTTTTCCGCCATCA glgBXCAP glgCAP glgCp3 3569571 reverse glgC(3568033,3569328) glgP(3564134,3566581) rho-independent(3564082,3564136) 3564082-3569571 3569328-3569571 TGCTCAACCTTTAAGCACGGATGAGTGGCAAAACGGGCCGAAACAGCTGCAAATTCTGCTCTCGGATCGCTTTTTGATCGCAATTAACGCCACGCTTGAGGTAACAGAGATTGTTTTACCTGCTGGGGAGTGGCACGCCATTCCCCCATTCGCTGGAGAGGATAACCCAGTGATTACGGCTGTCTGGCAGGGACCTGCACACGGATTGTGTGTGTTCCAGAGATGATAAAAAAGGAGTTAGTCA 3564082-3564134 AGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTTTTTTCCGCCATCA glgBXCAP glgBXCAP glgBp 3573657 reverse glgB(3571316,3573502) glgP(3564134,3566581) rho-independent(3564082,3564136) 3564082-3573657 3573502-3573657 GTGGCTGAATACATGAGTATTCACAGCCTTACCTGAAGTGAGGACGACGCAGAGAGGATGCACAGAGTGCTGCGCCGTTCAGGTCAAAAAAATGTCACAACCAGAAGTCAAAAATCCAATTGGATGGGGTGACACAATAAAACAGGAAGACAAGCA 3564082-3564134 AGTTCACCAATAAATAGAACGGGGCCAAAGGGTCCCGTTTTTTTCCGCCATCA gntRKU gntKU gntKp 3577645 reverse gntK(3577065,3577592) gntU(3575721,3577061) rho-independent(3575688,3575711) 3575688-3577645 3577592-3577645 CCGATAACAGTTACCCGTAACATTTTTAATTCTTGTATTGTGGGGGCACCACTT 3575688-3575721 AGTTTGTTCGCCCGGTAGTTGTGACGCTACCGGG gntRKU gntK gntKp 3577645 reverse gntK(3577065,3577592) gntK(3577065,3577592) rho-independent(3577006,3577038) 3577006-3577645 3577592-3577645 CCGATAACAGTTACCCGTAACATTTTTAATTCTTGTATTGTGGGGGCACCACTT 3577006-3577065 AGTAGTGACTACATTAACGCTTGTTTTAACAGCAGTAGGGTCTGTTTTACTGCTGCTGTT gntRKU gntR gntRp2 3578818 reverse gntR(3577731,3578726) gntR(3577731,3578726) rho-independent(3577622,3577652) 3577622-3578818 3578726-3578818 AATAATTGTAAACAAGCACTGTTTTCCCCGGGAAGGTTCTGATGTGTCCGTGTTAAACTAAGAGAATCTATCTCTTTTGTACCTTCAGGACGA 3577622-3577731 AGCCCACAAATTTGAAGTAGCTCACACTTATACACTTAAGGCATGGATGGATATTGCTTCTGATATTGTCCGGCTGGACAATGTTACCGATAACAGTTACCCGTAACATT gntRKU gntR gntRp3 3578862 reverse gntR(3577731,3578726) gntR(3577731,3578726) rho-independent(3577622,3577652) 3577622-3578862 3578726-3578862 CGCGTCGTTAGCACAATGCGATGCAATTGATTTAGTGTATATCTAATAATTGTAAACAAGCACTGTTTTCCCCGGGAAGGTTCTGATGTGTCCGTGTTAAACTAAGAGAATCTATCTCTTTTGTACCTTCAGGACGA 3577622-3577731 AGCCCACAAATTTGAAGTAGCTCACACTTATACACTTAAGGCATGGATGGATATTGCTTCTGATATTGTCCGGCTGGACAATGTTACCGATAACAGTTACCCGTAACATT gntRKU gntR gntRp4 3578880 reverse gntR(3577731,3578726) gntR(3577731,3578726) rho-independent(3577622,3577652) 3577622-3578880 3578726-3578880 ACGCTTCCGGGGTTTTGCCGCGTCGTTAGCACAATGCGATGCAATTGATTTAGTGTATATCTAATAATTGTAAACAAGCACTGTTTTCCCCGGGAAGGTTCTGATGTGTCCGTGTTAAACTAAGAGAATCTATCTCTTTTGTACCTTCAGGACGA 3577622-3577731 AGCCCACAAATTTGAAGTAGCTCACACTTATACACTTAAGGCATGGATGGATATTGCTTCTGATATTGTCCGGCTGGACAATGTTACCGATAACAGTTACCCGTAACATT ryhB ryhB yhhXp5 3581016 reverse ryhB(3580922,3581016) ryhB(3580922,3581016) 3580922-3581016 3581016-3581016 G yhhY yhhY yhhYp 3581111 forward yhhY(3581138,3581626) yhhY(3581138,3581626) 3581111-3581626 3581111-3581138 GACATTTACCCCAAAGAGGACAAAGGAA ugpBAECQ ugpBAECQ ugpBp1 3592378 reverse ugpB(3591009,3592325) ugpQ(3587370,3588113) 3587370-3592378 3592325-3592378 GCGAGCATAAAACGCGTGAATTCGCGCATTCGGTACAACAAGAGAGATAAACGA ugpBAECQ ugpBAECQ ugpBp2 3592426 reverse ugpB(3591009,3592325) ugpQ(3587370,3588113) 3587370-3592426 3592325-3592426 GTAACAAAAAAGTTATTTTTCTGTAATTCGAGCATGTCATGTTACCCCGCGAGCATAAAACGCGTGAATTCGCGCATTCGGTACAACAAGAGAGATAAACGA livKHMGF livKHMGF livKp2 3597730 reverse livK(3596451,3597560) livF(3592724,3593437) 3592724-3597730 3597560-3597730 TCTGTTCTTAATCGACTGAAAAATAGGGATTTTAATCGCTATTATCACAAAATACTGCGCTAACCCCTTAATCAGACAGGCAAAAACAGTGCAGTATAAAAAAAGAACAGTCTGATTTGTTAACACATAAAAACAAAGCAACACAACATCACGAATGGGGATTTTTGACTA livKHMGF livKHMGF livKp1 3597755 reverse livK(3596451,3597560) livF(3592724,3593437) 3592724-3597755 3597560-3597755 ATCTATCAATAAATTCAGAATATTATCTGTTCTTAATCGACTGAAAAATAGGGATTTTAATCGCTATTATCACAAAATACTGCGCTAACCCCTTAATCAGACAGGCAAAAACAGTGCAGTATAAAAAAAGAACAGTCTGATTTGTTAACACATAAAAACAAAGCAACACAACATCACGAATGGGGATTTTTGACTA livJ livJ livJp 3599762 reverse livJ(3598555,3599658) livJ(3598555,3599658) 3598555-3599762 3599658-3599762 AGAGTATGCTGCTAAAGCACGGGTAGTCATGCATAAAACGAAATAAAGTGCTGAAAAACAACATCACAACACACGTAATAACCAGAAGAATGGGGATTCTCAGGA rpoH rpoH rpoHp6 3600813 reverse rpoH(3599929,3600783) rpoH(3599929,3600783) rho-independent(3599887,3599907) 3599887-3600813 3600783-3600813 CGCCAGAAGATATCGATTGAGAGGATTTGAA 3599887-3599929 ATTTCCGCTATTAAGCAGAGAACCCTGGATGAGAGTCCGGGGT rpoH rpoH rpoHp5 3600849 reverse rpoH(3599929,3600783) rpoH(3599929,3600783) rho-independent(3599887,3599907) 3599887-3600849 3600783-3600849 TCTTAAGCTCTGGCACAGTTGTTGCTACCACTGAAGCGCCAGAAGATATCGATTGAGAGGATTTGAA 3599887-3599929 ATTTCCGCTATTAAGCAGAGAACCCTGGATGAGAGTCCGGGGT rpoH rpoH rpoHp4 3600863 reverse rpoH(3599929,3600783) rpoH(3599929,3600783) rho-independent(3599887,3599907) 3599887-3600863 3600783-3600863 GATAACCTCGTTGCTCTTAAGCTCTGGCACAGTTGTTGCTACCACTGAAGCGCCAGAAGATATCGATTGAGAGGATTTGAA 3599887-3599929 ATTTCCGCTATTAAGCAGAGAACCCTGGATGAGAGTCCGGGGT rpoH rpoH rpoHp3 3600870 reverse rpoH(3599929,3600783) rpoH(3599929,3600783) rho-independent(3599887,3599907) 3599887-3600870 3600783-3600870 AGTGAATGATAACCTCGTTGCTCTTAAGCTCTGGCACAGTTGTTGCTACCACTGAAGCGCCAGAAGATATCGATTGAGAGGATTTGAA 3599887-3599929 ATTTCCGCTATTAAGCAGAGAACCCTGGATGAGAGTCCGGGGT rpoH rpoH rpoHp1 3601003 reverse rpoH(3599929,3600783) rpoH(3599929,3600783) rho-independent(3599887,3599907) 3599887-3601003 3600783-3601003 TGCAATGGGTTCCGTAGCAGGGAAAGAGACCCCGTTGTCTCTTCCCGGTATTTCATCTCTATGTCACATTTTGTGCGTAATTTATTCACAAGCTTGCATTGAACTTGTGGATAAAATCACGGTCTGATAAAACAGTGAATGATAACCTCGTTGCTCTTAAGCTCTGGCACAGTTGTTGCTACCACTGAAGCGCCAGAAGATATCGATTGAGAGGATTTGAA 3599887-3599929 ATTTCCGCTATTAAGCAGAGAACCCTGGATGAGAGTCCGGGGT rpoH rpoH rpoHp2 3601003 reverse rpoH(3599929,3600783) rpoH(3599929,3600783) rho-independent(3599887,3599907) 3599887-3601003 3600783-3601003 TGCAATGGGTTCCGTAGCAGGGAAAGAGACCCCGTTGTCTCTTCCCGGTATTTCATCTCTATGTCACATTTTGTGCGTAATTTATTCACAAGCTTGCATTGAACTTGTGGATAAAATCACGGTCTGATAAAACAGTGAATGATAACCTCGTTGCTCTTAAGCTCTGGCACAGTTGTTGCTACCACTGAAGCGCCAGAAGATATCGATTGAGAGGATTTGAA 3599887-3599929 ATTTCCGCTATTAAGCAGAGAACCCTGGATGAGAGTCCGGGGT zntA zntA zntAp 3606422 forward zntA(3606451,3608649) zntA(3606451,3608649) 3606422-3608649 3606422-3606451 AATGAGAAAAAACTTAACCGGAGGATGCCA nikABCDER nikABCDER nikAp2 3613439 forward nikA(3613667,3615241) nikR(3618588,3618989) 3613439-3618989 3613439-3613667 TCACTCCTCGCTGTCAGTCAGCCATTGTCAGCTTGAAAATTTAAGCCTTGCGATCTGCACCCCTACTCCCTTTACGCTCACCGCCGACAGTGTGCAATGGATCGATTCAGTTAACTGATCCGCCCACCCGACTGCCCATCTATTGATCCAGAACAGGTAATCAGTATGACGAATACTTAAAATCGTCATACTTATTTCCGCCATCTATTTTAATCCATTGGGGTTACCA nikABCDER nikABCDER nikAp1 3613628 forward nikA(3613667,3615241) nikR(3618588,3618989) 3613628-3618989 3613628-3613667 ACTTATTTCCGCCATCTATTTTAATCCATTGGGGTTACCA nikABCDER nikR nikRp 3618537 forward nikR(3618588,3618989) nikR(3618588,3618989) 3618537-3618989 3618537-3618588 ATTACCCGCATTCCCCGTGCGCCGTCGCACCACAGAAAAGGTTTAACGCAAA yhiM yhiM yhiMp 3634743 forward yhiM(3634841,3635893) yhiM(3634841,3635893) 3634743-3635893 3634743-3634841 TGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTGAGGAGTTTAAAG pitA pitA pitAp 3637612 forward pitA(3637642,3639141) pitA(3637642,3639141) 3637612-3639141 3637612-3637642 GTTCATGTCCTCAAAATGGCGTAACGTCCTA uspB uspB uspBp 3639848 reverse uspB(3639385,3639720) uspB(3639385,3639720) 3639385-3639848 3639720-3639848 ATAGAGCCGCTCGTATGTTGGTCACCACAAAAGCGGTTTCTCCAGGACCTGGTGTTAACTGATTGGCAGCGTATCGGGAGCGGTAGCCCCGGGGTGGAACTCCGCGGGCAGGTCGCCGGGGAGGAGGTA uspA uspA uspAp1 3639983 forward uspA(3640111,3640545) uspA(3640111,3640545) rho-independent(3640570,3640591) 3639983-3640591 3639983-3640111 TGGTCTTAACACTGAATCTTTACGGCTGGGTTAGCCCCGCGCACGTAGTTCGCAGGACGCGGGTGACGTAACGGCACAAGAAACGCTAGCTGGCCAGTCATCGACAACTTTATGGAAGGAGTAACACTA 3640545-3640591 ATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT uspA uspA uspAp2 3639998 forward uspA(3640111,3640545) uspA(3640111,3640545) rho-independent(3640570,3640591) 3639998-3640591 3639998-3640111 ATCTTTACGGCTGGGTTAGCCCCGCGCACGTAGTTCGCAGGACGCGGGTGACGTAACGGCACAAGAAACGCTAGCTGGCCAGTCATCGACAACTTTATGGAAGGAGTAACACTA 3640545-3640591 ATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT uspA uspA uspAp3 3640000 forward uspA(3640111,3640545) uspA(3640111,3640545) rho-independent(3640570,3640591) 3640000-3640591 3640000-3640111 CTTTACGGCTGGGTTAGCCCCGCGCACGTAGTTCGCAGGACGCGGGTGACGTAACGGCACAAGAAACGCTAGCTGGCCAGTCATCGACAACTTTATGGAAGGAGTAACACTA 3640545-3640591 ATCTTCCCTCTACGACGTGTTCCTGAACGCCCGCATATGCGGGCGTT prlC-rsmJ prlC-yhiQ prlCp 3645238 reverse prlC(3643140,3645182) rsmJ(3642380,3643132) 3642380-3645238 3645182-3645238 ATTATGTAAAGCGCCTGTTGAGCGCTTCCTTAACCTCTTTAACCAGGACTGCGCGAA rlmJ rlmJ rlmJp 3645350 forward rlmJ(3645385,3646227) rlmJ(3645385,3646227) 3645350-3646227 3645350-3645385 CGGGCCGATTTTTACTTACCGGAACACCTTTACCCA gor gor gorp 3646112 forward gor(3646299,3647651) gor(3646299,3647651) 3646112-3647651 3646112-3646299 TTAACCCGCCGTGGAAACTGGAACAACAGATGAATAACGTGCTGCCGTGGCTGCACAGCAAACTGGTTCCGGCAGGCACCGGGCACGCCACCGTAAGCTGGATCGTGCCGGAGTAATTGCAGCCATTGCTGGCACCTATTACGTCTCGCGCTACAATCGCGGTAATCAACGATAAGGACACTTTGTCA gor gor gorp2 3646112 forward gor(3646299,3647651) gor(3646299,3647651) 3646112-3647651 3646112-3646299 TTAACCCGCCGTGGAAACTGGAACAACAGATGAATAACGTGCTGCCGTGGCTGCACAGCAAACTGGTTCCGGCAGGCACCGGGCACGCCACCGTAAGCTGGATCGTGCCGGAGTAATTGCAGCCATTGCTGGCACCTATTACGTCTCGCGCTACAATCGCGGTAATCAACGATAAGGACACTTTGTCA dinQ dinQ dinQp 3647982 reverse dinQ(3647705,3647788) dinQ(3647705,3647788) rho-independent(3647652,3647689) 3647652-3647982 3647788-3647982 GTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCTTTCAAAGTCCTGGTCAGAAGTACGGGTGGTGCCGTTAACTGATGCTCTGGCCGGAGTGAGAGAGTTCTTATCTAACAATGAGACATGCGCCGTGACAGGCAGTGGATGAGTAAGCGGATGCATTCTCACTCCATCGCATGGAGAAAACGGG 3647652-3647705 ATAGCGGAAACGTAATTAAGGGCTAAGAGCACACTACTCTTAGCCCTTTAACAT agrA agrA agrAp 3648063 forward agrA(3648063,3648144) agrA(3648063,3648144) rho-independent(3648117,3648144) 3648063-3648144 3648063-3648063 T agrB agrB agrBp 3648294 forward agrB(3648294,3648375) agrB(3648294,3648375) rho-independent(3648348,3648375) 3648294-3648375 3648294-3648294 T arsRBC arsRBC arsRp 3648512 forward arsR(3648528,3648881) arsC(3650237,3650662) 3648512-3650662 3648512-3648528 CAATCAGGAGCGCAATA slp-dctR slp-dctR slpp 3653936 forward slp(3653961,3654527) dctR(3654683,3655213) 3653936-3655213 3653936-3653961 AATATTTGTTGATAAGGATAGTAACA hdeAB-yhiD hdeAB-yhiD hdeAp 3656791 reverse hdeA(3656408,3656740) yhiD(3655255,3655902) 3655255-3656791 3656740-3656791 GTCGAAATTGATTCGTGACGGCTCTTTCACTTTATAGTTGAGGATATTACGA hdeAB-yhiD hdeAB-yhiD hdeAp2 3656791 reverse hdeA(3656408,3656740) yhiD(3655255,3655902) 3655255-3656791 3656740-3656791 GTCGAAATTGATTCGTGACGGCTCTTTCACTTTATAGTTGAGGATATTACGA hdeD hdeD hdeDp 3656960 forward hdeD(3656995,3657567) hdeD(3656995,3657567) 3656960-3657567 3656960-3656995 AGGGGATTTTCTTCTTAATTTTATAGGGTGGTTCTA hdeD hdeD hdeDp2 3656960 forward hdeD(3656995,3657567) hdeD(3656995,3657567) 3656960-3657567 3656960-3656995 AGGGGATTTTCTTCTTAATTTTATAGGGTGGTTCTA gadEF-mdtEF gadEF gadEp3 3657800 forward gadE(3658366,3658893) gadF(3658992,3659082) 3657800-3659082 3657800-3658366 AGTGCTGTGGGAAAGTGAACAAAGAGTTCCGTAAGCGTTGATGCTATGGGCGGTTAAATAAGTAATCCGGGTTCATTTTTTTGCAACTGGCGTTGATTACATTGCATAAATATCCGTGTCTCCAGACGCTATATAAAAACCTGAAGACATGAATGCGTTATTTACTCAGGTAATTTCAATGCGTTAAAAGAAAGCTGGCAATCCAATTGCCAGCTTAAGTCGAAACAAGGAGACTCGATATTTAAATCGGATTACATTTTAACTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAGGATGACATATTCGAAACGATAACGGCTAAGGAGCAAGTTA arrS arrS arrSp 3658054 reverse arrS(3657985,3658054) arrS(3657985,3658054) 3657985-3658054 3658054-3658054 G arrS arrS arrSp2 3658054 reverse arrS(3657985,3658054) arrS(3657985,3658054) 3657985-3658054 3658054-3658054 G gadEF-mdtEF gadE-mdtEF gadEp4 3658062 forward gadE(3658366,3658893) mdtF(3660414,3663527) 3658062-3663527 3658062-3658366 CTTTAGTAATATTCTTCAGAGATCACAAACTGGTTATTGATAACTTATTCTTGGGCAGTAATCCGCAAACGTTAACTTTTTGTTTGCTATTTACAAGCTGATAACAACCAGGAATCTTACTTAGGATCAATATATGGAGTGCGTGATGGATAAATCTGAAGTATTGATTAGTGTTAATAGACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAGGATGACATATTCGAAACGATAACGGCTAAGGAGCAAGTTA gadEF-mdtEF gadEF gadEp1 3658242 forward gadE(3658366,3658893) gadF(3658992,3659082) 3658242-3659082 3658242-3658366 ACGTATTAGTTCACGAAGGGTAAAGTTCTTATAGGCGTTTACTATATTGAACAACGATTCGGACAAGGATGTAAATAATGAAAAGGATGACATATTCGAAACGATAACGGCTAAGGAGCAAGTTA gadEF-mdtEF gadEF-mdtEF gadEp2 3658345 forward gadE(3658366,3658893) mdtF(3660414,3663527) 3658345-3663527 3658345-3658366 ATAACGGCTAAGGAGCAAGTTA gadEF-mdtEF mdtEF mdtEp1 3659084 forward mdtE(3659232,3660389) mdtF(3660414,3663527) 3659084-3663527 3659084-3659232 TCGTTGACCTCACCATGTCGATCACTGTGCCTGTATCCCACCTTACTGGCTGACAACCCCACTATGCCGCTGGTCTGTAAATCCCTCATATCTCTCCTCGCGCGCAATTTAAAGAACCGTTATTTCTCAAGAATTTTCAGGGACTAAAA gadEF-mdtEF mdtEF mdtEp2 3659140 forward mdtE(3659232,3660389) mdtF(3660414,3663527) 3659140-3663527 3659140-3659232 CCCCACTATGCCGCTGGTCTGTAAATCCCTCATATCTCTCCTCGCGCGCAATTTAAAGAACCGTTATTTCTCAAGAATTTTCAGGGACTAAAA gadEF-mdtEF mdtEF mdtEp3 3659145 forward mdtE(3659232,3660389) mdtF(3660414,3663527) 3659145-3663527 3659145-3659232 CTATGCCGCTGGTCTGTAAATCCCTCATATCTCTCCTCGCGCGCAATTTAAAGAACCGTTATTTCTCAAGAATTTTCAGGGACTAAAA gadAXW gadW gadWp1 3664651 reverse gadW(3663890,3664618) gadW(3663890,3664618) rho-independent(3663541,3663571) 3663541-3664651 3664618-3664651 AAATAATCGCAGTATGAAATATAAGGGATAATCA 3663541-3663890 ACATATTTCGCATTTGAATATTGGTCAGGATCTCACACCTGCTTCATGTGAAACTCTTCCCTGATGATTTCTGCCGGGCTACCGGCTAGTTCTCTTTCGCAGTTTGCCAGGCGGTATCGGTATTTTCAGGAGGAAAAGACTCGGCATGTTTGGGATTATTAAGCTGACAATTCATACGATTACGGGAATGTGGGTCAGTATTGTGTTGTTCAAATTGATGACGAATGGCTGGAGTGGTTTCTACTTTCAGTGCTGTGTACTAAGCCTGGTATTCCTGACGGTTAGCTGGTTGTTGAGTGGTGAATGGTTAGCAGGAAAGAGTAAGGCTGAACCTTCATGTTCAACCTTAC gadAXW gadW gadWp2 3664781 reverse gadW(3663890,3664618) gadW(3663890,3664618) rho-independent(3663541,3663571) 3663541-3664781 3664618-3664781 TGCTGCATTTACTTATTATCAATTAACTGTTATGCAAAACTACTTTGTGGATAAATTTTGGTCCTACCAAATCTGGCAGTTTTTGCGCTAAGAAACAGTCTGGCATCATTTCATTAGTATACTGAAATTGAAATAATCGCAGTATGAAATATAAGGGATAATCA 3663541-3663890 ACATATTTCGCATTTGAATATTGGTCAGGATCTCACACCTGCTTCATGTGAAACTCTTCCCTGATGATTTCTGCCGGGCTACCGGCTAGTTCTCTTTCGCAGTTTGCCAGGCGGTATCGGTATTTTCAGGAGGAAAAGACTCGGCATGTTTGGGATTATTAAGCTGACAATTCATACGATTACGGGAATGTGGGTCAGTATTGTGTTGTTCAAATTGATGACGAATGGCTGGAGTGGTTTCTACTTTCAGTGCTGTGTACTAAGCCTGGTATTCCTGACGGTTAGCTGGTTGTTGAGTGGTGAATGGTTAGCAGGAAAGAGTAAGGCTGAACCTTCATGTTCAACCTTAC gadY gadY gadYp 3664864 forward gadY(3664864,3664969) gadY(3664864,3664969) rho-independent(3664943,3664961) 3664864-3664961 3664864-3664864 A gadAXW gadX gadXp 3665839 reverse gadX(3664986,3665810) gadX(3664986,3665810) rho-independent(3664915,3664935) 3664915-3665839 3665810-3665839 TAATATGTTTATGTAATATTAAGTCAACTA 3664915-3664986 GAGTTTTACTCAGACATAAAAAAAACCCGGCATAGGGGACCGGGAAGAGGATAGTCTGCCGTCTCCAGACTA gadAXW gadXW gadXp 3665839 reverse gadX(3664986,3665810) gadW(3663890,3664618) rho-independent(3663541,3663571) 3663541-3665839 3665810-3665839 TAATATGTTTATGTAATATTAAGTCAACTA 3663541-3663890 ACATATTTCGCATTTGAATATTGGTCAGGATCTCACACCTGCTTCATGTGAAACTCTTCCCTGATGATTTCTGCCGGGCTACCGGCTAGTTCTCTTTCGCAGTTTGCCAGGCGGTATCGGTATTTTCAGGAGGAAAAGACTCGGCATGTTTGGGATTATTAAGCTGACAATTCATACGATTACGGGAATGTGGGTCAGTATTGTGTTGTTCAAATTGATGACGAATGGCTGGAGTGGTTTCTACTTTCAGTGCTGTGTACTAAGCCTGGTATTCCTGACGGTTAGCTGGTTGTTGAGTGGTGAATGGTTAGCAGGAAAGAGTAAGGCTGAACCTTCATGTTCAACCTTAC gadAXW gadAX gadAp 3667607 reverse gadA(3666180,3667580) gadX(3664986,3665810) rho-independent(3664915,3664935) 3664915-3667607 3667580-3667607 CCTTCAAATAAATTTAAGGAGTTCGAAA 3664915-3664986 GAGTTTTACTCAGACATAAAAAAAACCCGGCATAGGGGACCGGGAAGAGGATAGTCTGCCGTCTCCAGACTA gadAXW gadAX gadAp2 3667607 reverse gadA(3666180,3667580) gadX(3664986,3665810) rho-independent(3664915,3664935) 3664915-3667607 3667580-3667607 CCTTCAAATAAATTTAAGGAGTTCGAAA 3664915-3664986 GAGTTTTACTCAGACATAAAAAAAACCCGGCATAGGGGACCGGGAAGAGGATAGTCTGCCGTCTCCAGACTA ccp yhjA yhjAp 3669261 reverse ccp(3667791,3669188) ccp(3667791,3669188) 3667791-3669261 3669188-3669261 TCTCGCAGAGACGTTTGCAGCATTCTGGAAAATTTTCTGGGTCACAATAACTCACCACCGTGAGGGAAGAATAA treF treF treFp 3669551 forward treF(3669592,3671241) treF(3669592,3671241) 3669551-3671241 3669551-3669592 AAAGCCGATAATTAGCGACGAATTTCGGAGGTTGGATCCTTA rcdB yhjC yhjCp 3672136 forward rcdB(3672414,3673313) rcdB(3672414,3673313) 3672136-3673313 3672136-3672414 TTCCGCGACCACAAGCCAAAATAACAAACGGCAAGGAGACAAAAATAAGCACAAATAGCCAACACGTCCTCTGTTCACTTTAAAGGGAATCGCTGAAAAATACGCTCTGTTTAAGGGGATTCACCTTTCTCAGAAAGCTATTCCGCCCTTTTCCTGCTGAGAAATCGCCACATTCGGCATGACAACATTGTGAAACCCGGCATTAGATGTTAGAAAAAACAATAAACAATGCGATATGCGCGTTACTGTTTCGCTGTGAACAACAATCGGTCAAAGAAA yhjG yhjG yhjGp 3678412 reverse yhjG(3676290,3678350) yhjG(3676290,3678350) 3676290-3678412 3678350-3678412 CATTTTCCGCCTGGCTGGACTATCTTTAGGACTGGCACAGGAAGAATATGAGGAAGCGAACGA pdeH yhjH yhjHp 3679229 reverse pdeH(3678420,3679187) pdeH(3678420,3679187) 3678420-3679229 3679187-3679229 TCGAGTCCGGGCAGCATCACTTTTAAACACAGGACATCTTTGA yhjJ yhjJ yhjJp 3682016 reverse yhjJ(3680444,3681940) yhjJ(3680444,3681940) 3680444-3682016 3681940-3682016 AGTGTTTTTAACGTCATTTAGACTGACCGACAACGGGCAGTTTTTTTATTACCAGGATAGTTGATCAGGGGTTCACA dctA dctA dctAp 3683498 reverse dctA(3682161,3683447) dctA(3682161,3683447) 3682161-3683498 3683447-3683498 GCAGGTACCCCATAACCTTACAAGACCTGTGGTTTTACTAAAGGACACCCTA bcsABZC bcsBZ bcsBp 3692673 reverse bcsB(3690268,3692607) bcsZ(3689155,3690261) 3689155-3692673 3692607-3692673 GCCCGGAGCGGAGCGAAACGGCACAACCATCGGATCAGGCTTTGGCTCAACAATGATGATAACGCGA yhjR yhjR yhjRp 3696364 reverse yhjR(3695997,3696185) yhjR(3695997,3696185) 3695997-3696364 3696185-3696364 AATTTAGAAGGTCACAAGACGTGTGATTTTAGTCTTTTCGTTTTTAACTTTTTCTGTTGCGTAACGGAAAGTCAAAAAGTGAGCAAATTCCCGTCTCGCCGTAAACAATAAACCGGCGAAATGCTCACGGTTAGAATTGTCTCATGAACGGTACGGTTATTTCATAGGGATCAAGCAAAA bcsEFG bcsEFG bcsEp1 3696443 forward bcsE(3696458,3698029) bcsG(3698214,3699893) 3696443-3699893 3696443-3696458 AGACAAAATGGTGACA rdlD rdlD rdlDp 3700136 forward rdlD(3700136,3700199) rdlD(3700136,3700199) 3700136-3700199 3700136-3700136 G ldrD ldrD ldrDp 3700272 reverse ldrD(3699980,3700087) ldrD(3699980,3700087) rho-independent(3699899,3699929) 3699899-3700272 3700087-3700272 AAGCCGGAAAGGTTCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATTGGTTGCTGGAGAGAGAAAACCCCCGCACGTTGCAGGTATGCACCTGACAACACCACGGGGGCTAATCTTGACTCTAGACCACTCAAGAATAGCCGCGAAACGTTGTCATTACAACACAGGCGGCTATA 3699899-3699980 ACGTGTCATGCGGGCGTCAGGCTGCCGTAATGGCAATTTGCGCCCGGACCAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTT dppABCDF dppABCDF dppAp 3707870 reverse dppA(3706098,3707705) dppF(3701864,3702868) 3701864-3707870 3707705-3707870 ACGAGGGGCATTTTATGGAGGATCCGCACTGTTACACTGATGTTAATTAGTACGGCATCCCCACCTCATAACGTTGACCCGACCGGGCAAAAAACAAAAAAGGTCAGGCAGCGACAACCCACTGCAAAGGGTTAAAACAACAAACATCACAATTGGAGCAGAATAA proK proK proKp 3708694 reverse proK(3708616,3708692) proK(3708616,3708692) rho-independent(3708577,3708615) 3708577-3708694 3708692-3708694 TTC 3708577-3708616 AAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTTTTGCAT proK proK proKp 3708694 reverse proK(3708616,3708692) proK(3708616,3708692) rho-independent(3708409,3708447) 3708409-3708694 3708692-3708694 TTC 3708409-3708616 AAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTTTTGCATCTGCAGCTCATGAGGATGAGAACCTCCGGGGGCAGGGAGGTTCGACTCGAGCGAAGCGAGAGAACGTTGCGCCAGCAACGGCCCGCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTTTTGCAT eptB eptB eptBp 3710581 reverse eptB(3708784,3710475) eptB(3708784,3710475) 3708784-3710581 3710475-3710581 GCGCGTGTAGATTTTACTTATCTGACTACCTCCGCACTTTTTCCCTGCCGGGCCTGAAAAGCCACTAAGCAGGGTGTTATCACCTGTTTGTCCAGGGTTTGTTTGCA eptB eptB eptBp2 3710581 reverse eptB(3708784,3710475) eptB(3708784,3710475) 3708784-3710581 3710475-3710581 GCGCGTGTAGATTTTACTTATCTGACTACCTCCGCACTTTTTCCCTGCCGGGCCTGAAAAGCCACTAAGCAGGGTGTTATCACCTGTTTGTCCAGGGTTTGTTTGCA yhjX yhjX yhjXp 3712043 reverse yhjX(3710799,3712007) yhjX(3710799,3712007) 3710799-3712043 3712007-3712043 GAGATTTTTCCTTTTTATTACTGCAGGAATACTGCCA yiaF yiaF yiaFp 3719097 reverse yiaF(3718334,3719044) yiaF(3718334,3719044) 3718334-3719097 3719044-3719097 GTCAGACACGCGTGTGTCGTTGTGCGCTTTTTTTGGGTGAAAGGAGTAAGAAAA yiaG yiaG yiaGp 3719431 forward yiaG(3719478,3719768) yiaG(3719478,3719768) 3719431-3719768 3719431-3719478 GCTTCGATGCAATTCACGATCCCGCAGTGTGATTTGAGGAGTTTTCAA cspA cspA cspAp1 3719889 forward cspA(3720049,3720261) cspA(3720049,3720261) rho-independent(3720286,3720313) 3719889-3720313 3719889-3720049 AACGGTTTGACGTACAGACCATTAAAGCAGTGTAGTAAGGCAAGTCCCTTCAAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATACACTA 3720261-3720313 ATCTCTGCTTAAAAGCACAGAATCTAAGATCCCTGCCATTTGGCGGGGATTTT cspA cspA cspAp2 3719940 forward cspA(3720049,3720261) cspA(3720049,3720261) rho-independent(3720286,3720313) 3719940-3720313 3719940-3720049 AAGAGTTATCGTTGATACCCCTCGTAGTGCACATTCCTTTAACGCTTCAAAATCTGTAAAGCACGCCATATCGCCGAAAGGCACACTTAATTATTAAAGGTAATACACTA 3720261-3720313 ATCTCTGCTTAAAAGCACAGAATCTAAGATCCCTGCCATTTGGCGGGGATTTT insK insK insKp 3721065 forward insK(3721198,3722049) insK(3721198,3722049) 3721065-3722049 3721065-3721198 CAGAAAAAGCGGCATCAGCATTGGAGCTGTCAAAAGACCGACGCATTGAGGATCTTGAAAGGCAAGTTCGATTTCTTGAAACGCGGCTTATGTATCTAAAAAAGCTGAAAGCCTTAGCTCATCCCACGAAAAAG glyQS glyQS glyQp 3725354 reverse glyQ(3724407,3725318) glyS(3722328,3724397) rho-independent(3722291,3722310) 3722291-3725354 3725318-3725354 TTCCTTTAAATCCACACGTATCCAGCACGAAATAATA 3722291-3722328 ATAACGCCGTTATTAAATAGCCTGCCATCTGGCAGGCT xylAB xylAB xylAp 3730807 reverse xylA(3729443,3730765) xylB(3727917,3729371) 3727917-3730807 3730765-3730807 ATCATCCATCACCCGCGGCATTACCTGATTATGGAGTTCAATA xylFGHR xylFGHR xylFp 3731069 forward xylF(3731131,3732123) xylR(3734979,3736157) 3731069-3736157 3731069-3731131 ACGTTTATCGCGGTGATTGTTACTTATTAAAACTGTCCTCTAACTACAGAAGGCCCTACACCA xylFGHR xylR xylRp 3734906 forward xylR(3734979,3736157) xylR(3734979,3736157) 3734906-3736157 3734906-3734979 GATAAAAATTTTCTCAAAGCCGGTTACGTATTACCGGTTTTGAGTTTTTGCATGATTCAGCAGGAAAAGAACCA malS malS malSp 3737470 forward malS(3737497,3739527) malS(3737497,3739527) rho-independent(3739530,3739570) 3737470-3739570 3737470-3737497 AATCGCAGCAATAAGGACTCATCCGCCA 3739527-3739570 ACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAA malS malS malSp 3737470 forward malS(3737497,3739527) malS(3737497,3739527) rho-independent(3739595,3739620) 3737470-3739620 3737470-3737497 AATCGCAGCAATAAGGACTCATCCGCCA 3739527-3739620 ACTTTTCCGGCTTCCCGTTCGTCAGTACCTCGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTC avtA avtA avtAp 3739674 forward avtA(3739705,3740958) avtA(3739705,3740958) 3739674-3740958 3739674-3739705 CCTTGCTACAGAGTTCGACAGATATCCCGCTA plaR plaR plaRp 3742618 reverse plaR(3741684,3742532) plaR(3741684,3742532) 3741684-3742618 3742532-3742618 AAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAA yiaKLMNO-lyxK-sgbHUE yiaKLMNO-lyx-sgbHUE yiaKp1 3742674 forward yiaK(3742733,3743731) sgbE(3750086,3750781) 3742674-3750781 3742674-3742733 AGTTTCGCATATTGAAATTTTAAGCCAAAAAAGCGATCAAAAAAACAAGGAAGCCTGGGA yiaKLMNO-lyxK-sgbHUE yiaKLMNO-lyx-sgbHUE yiaKp2 3742720 forward yiaK(3742733,3743731) sgbE(3750086,3750781) 3742720-3750781 3742720-3742733 AAGGAAGCCTGGGA aldB aldB aldBp 3756535 reverse aldB(3754973,3756511) aldB(3754973,3756511) rho-independent(3754906,3754941) 3754906-3756535 3756511-3756535 ACCTCACACCGCAAGGAGACGATCA 3754906-3754973 ATATAAGAAGCTGGTCGCATTGGGTATTCATTGCCTGATGCGACGCTTACGCGTCTTATCATGCCTAC selAB selAB selAp 3761297 reverse selA(3759858,3761249) selB(3758017,3759861) 3758017-3761297 3761249-3761297 TTAAACGCCCTTCTCCGTGTGAGAGGGCCTTGATCAGCCAGGTTTCCTA yibF yibF yibFp 3761975 reverse yibF(3761347,3761955) yibF(3761347,3761955) 3761347-3761975 3761955-3761975 CCTCGCACAAAGGACTCGGCA mtlADR mtlADR mtlAp 3772188 forward mtlA(3772281,3774194) mtlR(3775572,3776159) rho-independent(3776155,3776175) 3772188-3776175 3772188-3772281 TATCTACAAGGTCCGGCTACCTCTGCCGCCACATTAACAAAAAACCTCGGGCTTCCAGCCTGCGCGACAGCAAACATAAGAAGGGGTGTTTTTA 3776159-3776175 AGCAACGTCTGCTTACT mtlADR mtlADR mtlAp 3772188 forward mtlA(3772281,3774194) mtlR(3775572,3776159) rho-independent(3776189,3776209) 3772188-3776209 3772188-3772281 TATCTACAAGGTCCGGCTACCTCTGCCGCCACATTAACAAAAAACCTCGGGCTTCCAGCCTGCGCGACAGCAAACATAAGAAGGGGTGTTTTTA 3776159-3776209 AGCAACGTCTGCTTACTGCCCCTCTACCTGCTTCGGCCGATAAAGCCGACG mtlADR mtlADR mtlAp 3772188 forward mtlA(3772281,3774194) mtlR(3775572,3776159) rho-independent(3776277,3776304) 3772188-3776304 3772188-3772281 TATCTACAAGGTCCGGCTACCTCTGCCGCCACATTAACAAAAAACCTCGGGCTTCCAGCCTGCGCGACAGCAAACATAAGAAGGGGTGTTTTTA 3776159-3776304 AGCAACGTCTGCTTACTGCCCCTCTACCTGCTTCGGCCGATAAAGCCGACGATAATACTCCAGACGTTGTAGATATAACGGCACGCTTTCATCGGGTATTCCGGACGGAATCGCGTTACGGGGAGGAAGTTTTTTCAGATACTCCC mtlADR mtlADR mtlAp 3772188 forward mtlA(3772281,3774194) mtlR(3775572,3776159) rho-independent(3776401,3776419) 3772188-3776419 3772188-3772281 TATCTACAAGGTCCGGCTACCTCTGCCGCCACATTAACAAAAAACCTCGGGCTTCCAGCCTGCGCGACAGCAAACATAAGAAGGGGTGTTTTTA 3776159-3776419 AGCAACGTCTGCTTACTGCCCCTCTACCTGCTTCGGCCGATAAAGCCGACGATAATACTCCAGACGTTGTAGATATAACGGCACGCTTTCATCGGGTATTCCGGACGGAATCGCGTTACGGGGAGGAAGTTTTTTCAGATACTCCCGGAACGCCTGGCTTGATGCCATGAAATCTACGGCTTTATCGATAAGAAGCGGAACGTTTTCACCTAATTTGCCCATGATGATATCTCCGTATTACCCCGCGCCGGGAATGCGCGG lldPRD lldPRD lldPp 3777289 forward lldP(3777399,3779054) lldD(3779827,3781017) 3777289-3781017 3777289-3777399 GTCATTATCCCTACACAACACAATTGGCAGTGCCACTTTTACACAACGTGTGACAAGGAGATGAGCAACAGACTCATTACACGATGTGCGTGGACTCCAGGAGACCTGCAA cysE cysE cysEp 3782681 reverse cysE(3781741,3782562) cysE(3781741,3782562) 3781741-3782681 3782562-3782681 ACTAGGTCGTGCACGCAAGGACGAGCGCAGCAGCCACTAACCCCAGGGAACCTTTGTTACCGCTATGACCCGGCCCGCGCAGAACGGGCCGGTCATTATCTCATCGTGTGGAGTAAGCAA yibN-grxC-secB-gpsA secB-gpsA secBp 3784203 reverse secB(3783661,3784128) gpsA(3782642,3783661) 3782642-3784203 3784128-3784203 CCTGCTGAAATAACGTGTGAACGTTGGCATTACATTGCGCAGTATTTAAGGACAACACTTAAGGGTTTTCTACACA gpmM-envC-yibQ gpmM-envC-yibQ gpmMp2 3785187 forward gpmM(3785260,3786804) yibQ(3788101,3789060) 3785187-3789060 3785187-3785260 TCAGAGGCTATTTTATCGATTCAGCTGTAGTAAAATTACGCAAATTTTGACTCTTGAGTATGAGGTTGTCGCAA yibN-grxC-secB-gpsA yibN-grxC-secB-gpsA yibNp 3785195 reverse yibN(3784584,3785015) gpsA(3782642,3783661) 3782642-3785195 3785015-3785195 AGCCTCTGAAGATCAAAATATACGACCGCTCGCGGCAAGCCGATGCCAGATTTACGCTTTTTTTTCGTCGCGCCCCGCAAAATTGCATTCCAGTTAACGCGCTGGCTGTATTTGCCGCACCGCGCAGGTATACTCCTTTCCTGGTTTTTTTAATCACTACGTCGGGAGTTGTTACCCCCCA gpmM-envC-yibQ gpmM-envC-yibQ gpmMp1 3785235 forward gpmM(3785260,3786804) yibQ(3788101,3789060) 3785235-3789060 3785235-3785260 GACTCTTGAGTATGAGGTTGTCGCAA waaH yibD yibDp1 3790149 reverse waaH(3789047,3790081) waaH(3789047,3790081) 3789047-3790149 3790081-3790149 AGGCTTAATAGTTTCTTAATACAAAGCCTGTAAAACGTCAGGATAACTTCAGAGGTCGTCGGTAATTTA kbl-tdh kbl-tdh kblp 3792577 reverse kbl(3791355,3792551) tdh(3790320,3791345) 3790320-3792577 3792551-3792577 GAATTTGCCCTGTCTGGAGAATCGCAA rfaD-waaFCL rfaDFCL rfaDp3 3793865 forward rfaD(3793987,3794919) waaL(3796948,3798207) 3793865-3798207 3793865-3793987 TTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTA rfaD-waaFCL rfaDFCL rfaDp2 3793896 forward rfaD(3793987,3794919) waaL(3796948,3798207) 3793896-3798207 3793896-3793987 TAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTA rfaD-waaFCL rfaDFCL rfaDp1 3793939 forward rfaD(3793987,3794919) waaL(3796948,3798207) 3793939-3798207 3793939-3793987 ATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTA rfaD-waaFCL rfaDFCL rfaDp4 3793970 forward rfaD(3793987,3794919) waaL(3796948,3798207) 3793970-3798207 3793970-3793987 ATTCGAAGGTTACAGTTA rirA-waaQGPSBOJYZU rfaYZ waaYp 3801136 reverse waaY(3800267,3800965) waaZ(3799345,3800196) 3799345-3801136 3800965-3801136 AGAAAATTCCCCCTGGAAAGATGACTCTCCACGAGATGCGAAATCAATTATTGAATTTAAAAAAAGATATAAACATCTTTTAGTGCAACATCATTATATCTCAGGAATTATAGCAGGAGTCTGTTATCTTTGCCGAAAATATTACCGTAAATAACATTTAACTGGTTTATTA rirA-waaQGPSBOJYZU rfaQGPSBIJYZ-waaU waaQp 3808180 reverse waaQ(3807064,3808098) waaU(3798239,3799312) 3798239-3808180 3808098-3808180 TTTTTTCTGCTTAACTTAACCAGACAATCACACAAAAGAGTCGCTAGTGGAAAAGCCATTTCGAAAAATCCTGGTCATAAAGA rirA-waaQGPSBOJYZU rirA-rfaQGPSBIJYZ-waaU rirAp 3808238 reverse rirA(3808166,3808238) waaU(3798239,3799312) 3798239-3808238 3808238-3808238 T waaA-coaD waaA waaAp2 3808256 forward waaA(3808540,3809817) waaA(3808540,3809817) 3808256-3809817 3808256-3808540 TCTTTCGCAGCAATCCGACCCGAATGATTTTTATACACAAAATATACTTTAATCATAAAAATCAAATAGATAAAAAATAGCATTTCGATAATGTCAGTACGGCCTATGTAGATTTGAAAATGGGGCCGAGTTTCAATGAATCGCATAAAAATACAAAAAAAATGAAGATGTAGCGGCAGATCAGACCAAACTGAAGCTATTTAAGTCAAAAACGGGAAAAGTAATGGTAAAGCCACAGCTAAATACATAGAATCCCCAGCACATCCATAAGTCAGCTATTTACTA waaA-coaD kdtA-coaD waaAp1 3808516 forward waaA(3808540,3809817) coaD(3809825,3810304) 3808516-3810304 3808516-3808540 ACATCCATAAGTCAGCTATTTACTA waaA-coaD waaA waaAp1 3808516 forward waaA(3808540,3809817) waaA(3808540,3809817) 3808516-3809817 3808516-3808540 ACATCCATAAGTCAGCTATTTACTA yicR-rpmBG-mutM mutM mutMp 3811175 reverse mutM(3810343,3811152) mutM(3810343,3811152) 3810343-3811175 3811152-3811175 ATCTGTTCATTCCTGGAGATGCTA yicR-rpmBG-mutM rpmBG-mutM rpmBp 3811995 reverse rpmB(3811438,3811674) mutM(3810343,3811152) 3810343-3811995 3811674-3811995 GAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATGTTTCTTTTGCCGAACGCGGCTGGATTTAACCCGCTATGCGCGATCCTTCGGGATCTTTGTCTGTTCGGGACTTGAGCACATCGCTGAGTCAGCGTATACTACGCCACCTTTGAGAATCTCGGGTTTGGCATTTGGGCCTGGCAATCGAGAGTTCACATAGAACTGCGATGACCGGGCTGTAAAGCCTGACGAGGCGCCAATACCCCATACGAAGCTCGAGCTAATTTGATTTTTGGAGAATAGACA yicR-rpmBG-mutM rpmBG rpmBp 3811995 reverse rpmB(3811438,3811674) rpmG(3811250,3811417) rho-independent(3811209,3811225) 3811209-3811995 3811674-3811995 GAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATGTTTCTTTTGCCGAACGCGGCTGGATTTAACCCGCTATGCGCGATCCTTCGGGATCTTTGTCTGTTCGGGACTTGAGCACATCGCTGAGTCAGCGTATACTACGCCACCTTTGAGAATCTCGGGTTTGGCATTTGGGCCTGGCAATCGAGAGTTCACATAGAACTGCGATGACCGGGCTGTAAAGCCTGACGAGGCGCCAATACCCCATACGAAGCTCGAGCTAATTTGATTTTTGGAGAATAGACA 3811209-3811250 ATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGT yicR-rpmBG-mutM yicR-rpmBG-mutM yicRp 3812577 reverse yicR(3811891,3812559) mutM(3810343,3811152) 3810343-3812577 3812559-3812577 ACCACAAAGGAGGTGAAGG yicR-rpmBG-mutM yicR-rpmBG yicRp 3812577 reverse yicR(3811891,3812559) rpmG(3811250,3811417) rho-independent(3811209,3811225) 3811209-3812577 3812559-3812577 ACCACAAAGGAGGTGAAGG 3811209-3811250 ATTCTCGCTTTGATGTAACAAAAAACCTCGCTCCGGCGGGGT dfp dfp dfpp 3812703 forward dfp(3812731,3813951) dfp(3812731,3813951) 3812703-3813951 3812703-3812731 CTGGTGTCACCCTACAGGAAAAATCATCA dut-slmA dut-slmA dutp 3813852 forward dut(3813929,3814387) slmA(3814494,3815090) 3813852-3815090 3813852-3813929 GGACGGAGATAAAGTCTTACCGCTTGAGCGCAAAGAGCTCCTTGGCCAATTATTACTCGACGAGATCGTGACCCGTTA rph-pyrE rph-pyrE rphp 3816580 reverse rph(3815863,3816549) pyrE(3815127,3815768) rho-independent(3815096,3815119) 3815096-3816580 3816549-3816580 GCCACATTTGTTTCAAGCCGGAGATTTCAATA 3815096-3815127 AAGAAACTCGCCGGATGAAAAGTCATCCGGCG rph-pyrE rph rphp 3816580 reverse rph(3815863,3816549) rph(3815863,3816549) rho-independent(3815807,3815828) 3815807-3816580 3816549-3816580 GCCACATTTGTTTCAAGCCGGAGATTTCAATA 3815807-3815863 GCGACGCAGAAGGCGGCGCTGGCAAACTGATTTTTAAGGCGACTGATGAGTCGCCTT yicC yicC yicCp 3816645 forward yicC(3816676,3817539) yicC(3816676,3817539) rho-independent(3817574,3817603) 3816645-3817603 3816645-3816676 TCCACCTCTCCTTTTATAAACAGGAACGTCTA 3817539-3817603 ACTCGTAACGCCAATTCTTACTTTTCCGCCTTCACAAATGCCGCCACTCAAACAGAGCGGCATTT dinD dinD dinDp 3817699 forward dinD(3817760,3818584) dinD(3817760,3818584) 3817699-3818584 3817699-3817760 CTGTATATAAATACAGTTACAGATTTACTTTCTTTGCAATTGATATCACATGGAGTGGGCAA gmk gmk gmkp 3821388 forward gmk(3821428,3822051) gmk(3821428,3822051) 3821388-3822051 3821388-3821428 ATGTAGGCTTTATTTCGCTAATCACATACGAAAGATACTCA rpoZ-spoT-trmH-recG rpoZ-spoT-trmH-recG rpoZp 3822077 forward rpoZ(3822106,3822381) recG(3825210,3827291) 3822077-3827291 3822077-3822106 CATTTCTTCACCTGTGGAGCTTTTTAAGTA yicH yicH yicHp 3830431 forward yicH(3830457,3832166) yicH(3830457,3832166) 3830431-3832166 3830431-3830457 ATGTGCATTTCACGGGATGGAAGACCA selC selC selCp 3836198 forward selC(3836222,3836316) selC(3836222,3836316) 3836198-3836316 3836198-3836222 GCCTCCATGTAGCAATCGAGGCGCG yicJI yicJI yicJp 3836664 reverse yicJ(3834547,3835929) yicI(3832219,3834537) 3832219-3836664 3835929-3836664 GGTGAAGTTTATAGTCAGTTTTTTTCGCCAGCGGTTAAAGAAATAGAATAGTCGTATAAAAAAGGGTGTTCTGGGGCGAGTAAAACAACATCTTCACCTTAATGGCGATACAGTTGGCTGAGAGTCAGCAGGGGGGCAAATCACCTGCAAATAAACACGGCGCATACTGGCGTGAATATCGCGGATGCGTTCGAGGACAGAAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAGGCATTTTGGCGGAAGATCACAGGAGTCGAACCTGCCCGGGACCGCTGGCGGCCCCAACTGGATTTGAAGTCCAGCCGCCTCACCGGAGACGACGATCTTCCGCGCCTCGATTGCTACATGGAGGCGGGGCGCATTATAGCTACTTCCTTGAGTTTCTACATCCCCCAGATCAGTTTTTTCCGCCTAATACACGCAGCGTATTATCACGAAAGCATTATAGTTCATATAAAACCCATATTTTACAATGATATATGAGCGGAATTAACGCTACCACGATCACATAAAACAAGAATCATAAATTAATAACCAGATATCGGAATATTCGCTCTCACAGGGATGGTTTACAAAATGCGTTATCGGTCTCAGCACCCCTATAGCATCAAGGAAAAGCAGA nlpA nlpA nlpAp 3840017 reverse nlpA(3839175,3839993) nlpA(3839175,3839993) 3839175-3840017 3839993-3840017 AATCATTAATAAAAGGATAAAAAAA nepI nepI nepIp 3841771 reverse nepI(3840549,3841739) nepI(3840549,3841739) 3840549-3841771 3841739-3841771 CTTTTCCCCTGAAACATGCCACGGGTAACACCA adeD ade adep 3843910 forward adeD(3843964,3845730) adeD(3843964,3845730) 3843910-3845730 3843910-3843964 ACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATA uhpT uhpT uhpTp 3847198 reverse uhpT(3845776,3847167) uhpT(3845776,3847167) 3845776-3847198 3847167-3847198 CTCACGCAGGTATTCATTTCAGGAGTAACCCA ivbL-ilvBN-uhpABC uhpB uhpBp 3850294 reverse uhpB(3848634,3850136) uhpB(3848634,3850136) 3848634-3850294 3850136-3850294 GTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCCGAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTAGAGCTGGCGCGCCGCATGTTTGATGGCTGGTGA ivbL-ilvBN-uhpABC ivbL-ilvBN ivbLp 3853023 reverse ivbL(3852890,3852988) ilvN(3850802,3851092) rho-independent(3850746,3850779) 3850746-3853023 3852988-3853023 AAATATTGTTAAACACAAAACCAACAAGGTCCCCAA 3850746-3850802 ACCGCTCAAGGCTTGAACAACATCGCGCTTATCGTTAAGGTAAGCGCGTATTTTTTT ivbL-ilvBN-uhpABC ivbL ivbLp 3853023 reverse ivbL(3852890,3852988) ivbL(3852890,3852988) rho-independent(3852835,3852982) 3852835-3853023 3852988-3853023 AAATATTGTTAAACACAAAACCAACAAGGTCCCCAA 3852835-3852890 GGGACTGGAACAACACACGATTCCAAAACCCCGCCGGCGCAAACCGGGCGGGGTTT istR istR-1 istR-1p 3853192 reverse istR(3853118,3853257) istR(3853118,3853257) rho-independent(3853118,3853144) 3853118-3853192 3853257-3853192 istR istR-2 istR-2p 3853257 reverse istR(3853118,3853257) istR(3853118,3853257) rho-independent(3853118,3853144) 3853118-3853257 3853257-3853257 G tisB tisB tisBp 3853337 forward tisB(3853553,3853642) tisB(3853553,3853642) rho-independent(3853662,3853689) 3853337-3853689 3853337-3853553 GTACGCAATGTGTTATGCGGGGGCCGCATCGTTACCCGGCGCACTAAGTCCTGGCTGAAACGGGTGGTGCCGTCAGCGCCTTAACCCCGCGTGAGCACACTGTGTTATGTCAACAAGCACAACGTTTCTCCTTGAGATACCGCGTGCACAACAGCTGGCAACAGGCAGCGGAAAGGTACGTCAGCTGGCAGTGCTCCTGAACCACAGGAGACGCGTA 3853642-3853689 ATTCAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTT emrD emrD emrDp 3853845 forward emrD(3853922,3855106) emrD(3853922,3855106) 3853845-3855106 3853845-3853922 GTGATAGATTCCTCTCCCGCATTTATGGGAATGCGTAGTGACTTATTCTAATTATTTTTATAAAAGCATCCGTGATAA yidL yidL yidLp 3860253 forward yidL(3860283,3861176) yidL(3860283,3861176) 3860253-3861176 3860253-3860283 GTGAGCATAATTCGCCGGAGGGATATTAAAA ibpAB ibpB ibpBp 3866981 reverse ibpB(3866469,3866897) ibpB(3866469,3866897) 3866469-3866981 3866897-3866981 ACATCTCCATGCTCGCCGTCAGGGAGCATATGCGAATCTTCGGATTTGCAGGTACTTACTCGCTTCTTAGAAGGAGAAATGACTA ibpAB ibpAB ibpAp 3867518 reverse ibpA(3867009,3867422) ibpB(3866469,3866897) 3866469-3867518 3867422-3867518 GTAGCCGATGAGGACGCGCCTGATGGGTGTTCTGGCTACCTGACCTGTCCATTGTGGAAGGTCTTACATTCTCGCTGATTTCAGGAGCTATTGATTA yidQ yidQ yidQp 3867544 forward yidQ(3867728,3868060) yidQ(3867728,3868060) 3867544-3868060 3867544-3867728 ACTTTTCAAGCCTTATCAGCGGACTTTTTTTTGCAGTTTATGGTCTATTGCATAGACTGAGGGGGCAGCACGAAACGTTAAAGTGCGATAGCCGCCACAGTGCGACGTAATGATGATGTTATTTTCAGCAAGGGATCGCTATAACTCATCAGGCCAACACCCACGATCAACAGATGAATTTATTA dgoRKADT dgoRKADT dgoRp 3875185 reverse dgoR(3874471,3875160) dgoT(3870438,3871730) 3870438-3875185 3875160-3875185 AACATACAGAGCACAAGGACTCTCCA gyrB gyrB gyrBp 3880150 reverse gyrB(3877705,3880119) gyrB(3877705,3880119) rho-independent(3877532,3877586) 3877532-3880150 3880119-3880150 TAACCCAAGTATAAATGAGCGAGAAACGTTGA 3877532-3877705 ATGGCGCTAACCATGCGAGCGTGCCTGATGCGCTACGCTTATCAGGCCTACGAAAATCTTGCAATGTATTGAATTTTCATGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAGCTATAAGAAAAGGGCGGAGATCATCTCCGCCCTTTTTATTTCTGCAAT gyrB gyrB gyrBp2 3880150 reverse gyrB(3877705,3880119) gyrB(3877705,3880119) rho-independent(3877532,3877586) 3877532-3880150 3880119-3880150 TAACCCAAGTATAAATGAGCGAGAAACGTTGA 3877532-3877705 ATGGCGCTAACCATGCGAGCGTGCCTGATGCGCTACGCTTATCAGGCCTACGAAAATCTTGCAATGTATTGAATTTTCATGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAGCTATAAGAAAAGGGCGGAGATCATCTCCGCCCTTTTTATTTCTGCAAT dnaAN-recF recF recFp1 3881841 reverse recF(3880148,3881221) recF(3880148,3881221) 3880148-3881841 3881221-3881841 GAAACCGAAGGTGAAGAACTGCGCACCGTGGCAACCGACGGCCACCGTCTGGCGGTCTGTTCAATGCCAATTGGTCAATCTTTGCCAAGCCATTCGGTGATCGTACCGCGTAAAGGCGTGATTGAACTGATGCGTATGCTCGACGGCGGCGACAATCCGCTGCGCGTACAGATTGGCAGCAACAACATTCGCGCCCACGTTGGCGACTTTATCTTCACCTCCAAACTGGTGGATGGTCGCTTCCCGGATTATCGCCGCGTTCTGCCGAAGAACCCGGACAAACATCTGGAAGCTGGCTGCGATCTGCTCAAGCAGGCGTTTGCTCGCGCGGCGATTCTCTCTAACGAGAAATTCCGCGGCGTACGTCTTTATGTCAGCGAAAACCAGCTGAAAATCACCGCCAACAACCCGGAACAGGAAGAAGCGGAAGAGATCCTCGACGTTACCTATAGCGGTGCGGAGATGGAAATCGGCTTCAACGTCAGTTATGTGCTGGATGTTCTGAACGCGCTGAAATGCGAAAACGTCCGCATGATGCTGACCGATTCGGTTTCCAGCGTGCAGATTGAAGATGCGGCCAGCCAGAGCGCGGCTTATGTTGTCATGCCAATGAGACTGTAA dnaAN-recF recF recFp2 3881861 reverse recF(3880148,3881221) recF(3880148,3881221) 3880148-3881861 3881221-3881861 ACTTAAATGGTATGCTGTTTGAAACCGAAGGTGAAGAACTGCGCACCGTGGCAACCGACGGCCACCGTCTGGCGGTCTGTTCAATGCCAATTGGTCAATCTTTGCCAAGCCATTCGGTGATCGTACCGCGTAAAGGCGTGATTGAACTGATGCGTATGCTCGACGGCGGCGACAATCCGCTGCGCGTACAGATTGGCAGCAACAACATTCGCGCCCACGTTGGCGACTTTATCTTCACCTCCAAACTGGTGGATGGTCGCTTCCCGGATTATCGCCGCGTTCTGCCGAAGAACCCGGACAAACATCTGGAAGCTGGCTGCGATCTGCTCAAGCAGGCGTTTGCTCGCGCGGCGATTCTCTCTAACGAGAAATTCCGCGGCGTACGTCTTTATGTCAGCGAAAACCAGCTGAAAATCACCGCCAACAACCCGGAACAGGAAGAAGCGGAAGAGATCCTCGACGTTACCTATAGCGGTGCGGAGATGGAAATCGGCTTCAACGTCAGTTATGTGCTGGATGTTCTGAACGCGCTGAAATGCGAAAACGTCCGCATGATGCTGACCGATTCGGTTTCCAGCGTGCAGATTGAAGATGCGGCCAGCCAGAGCGCGGCTTATGTTGTCATGCCAATGAGACTGTAA dnaAN-recF dnaN-recF dnaNp4 3882348 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882348 3882321-3882348 TAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaN-recF dnaNp5 3882348 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882348 3882321-3882348 TAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaN-recF dnaNp3 3882562 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882562 3882321-3882562 AAAGTCGCGGATCTCCTTTCCAAGCGTCGATCCCGCTCGGTGGCGCGTCCGCGCCAGATGGCGATGGCGCTGGCGAAAGAGCTGACTAACCACAGTCTGCCGGAGATTGGCGATGCGTTTGGTGGCCGTGACCACACGACGGTGCTTCATGCCTGCCGTAAGATCGAGCAGTTGCGTGAAGAGAGCCACGATATCAAAGAAGATTTTTCAAATTTAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaN-recF dnaNp2 3882590 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882590 3882321-3882590 GAAGACGGTGGCGGAGTACTACAAGATCAAAGTCGCGGATCTCCTTTCCAAGCGTCGATCCCGCTCGGTGGCGCGTCCGCGCCAGATGGCGATGGCGCTGGCGAAAGAGCTGACTAACCACAGTCTGCCGGAGATTGGCGATGCGTTTGGTGGCCGTGACCACACGACGGTGCTTCATGCCTGCCGTAAGATCGAGCAGTTGCGTGAAGAGAGCCACGATATCAAAGAAGATTTTTCAAATTTAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaN-recF dnaNp6 3882590 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882590 3882321-3882590 GAAGACGGTGGCGGAGTACTACAAGATCAAAGTCGCGGATCTCCTTTCCAAGCGTCGATCCCGCTCGGTGGCGCGTCCGCGCCAGATGGCGATGGCGCTGGCGAAAGAGCTGACTAACCACAGTCTGCCGGAGATTGGCGATGCGTTTGGTGGCCGTGACCACACGACGGTGCTTCATGCCTGCCGTAAGATCGAGCAGTTGCGTGAAGAGAGCCACGATATCAAAGAAGATTTTTCAAATTTAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaN-recF dnaNp1 3882733 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882733 3882321-3882733 GTACGTGAGCTGGAAGGGGCGCTGAACCGCGTCATTGCCAATGCCAACTTTACCGGACGGGCGATCACCATCGACTTCGTGCGTGAGGCGCTGCGCGACTTGCTGGCATTGCAGGAAAAACTGGTCACCATCGACAATATTCAGAAGACGGTGGCGGAGTACTACAAGATCAAAGTCGCGGATCTCCTTTCCAAGCGTCGATCCCGCTCGGTGGCGCGTCCGCGCCAGATGGCGATGGCGCTGGCGAAAGAGCTGACTAACCACAGTCTGCCGGAGATTGGCGATGCGTTTGGTGGCCGTGACCACACGACGGTGCTTCATGCCTGCCGTAAGATCGAGCAGTTGCGTGAAGAGAGCCACGATATCAAAGAAGATTTTTCAAATTTAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaN-recF dnaNp 3882733 reverse dnaN(3881221,3882321) recF(3880148,3881221) 3880148-3882733 3882321-3882733 GTACGTGAGCTGGAAGGGGCGCTGAACCGCGTCATTGCCAATGCCAACTTTACCGGACGGGCGATCACCATCGACTTCGTGCGTGAGGCGCTGCGCGACTTGCTGGCATTGCAGGAAAAACTGGTCACCATCGACAATATTCAGAAGACGGTGGCGGAGTACTACAAGATCAAAGTCGCGGATCTCCTTTCCAAGCGTCGATCCCGCTCGGTGGCGCGTCCGCGCCAGATGGCGATGGCGCTGGCGAAAGAGCTGACTAACCACAGTCTGCCGGAGATTGGCGATGCGTTTGGTGGCCGTGACCACACGACGGTGCTTCATGCCTGCCGTAAGATCGAGCAGTTGCGTGAAGAGAGCCACGATATCAAAGAAGATTTTTCAAATTTAATCAGAACATTGTCATCGTAAACCTA dnaAN-recF dnaAN-recF dnaAp2 3883882 reverse dnaA(3882326,3883729) recF(3880148,3881221) 3880148-3883882 3883729-3883882 CGGTCCCGATCGTTTTGCAGGATCTTGATCGGGCATATAACCGCAGACAGCGGTTCGTGCGTCACCCTCAAGCAGGGTCTTTTCGACGTACGTCAACAATCATGAATGTTTCAGCCTTAGTCATTATCGACTTTTGTTCGAGTGGAGTCCGCCG dnaAN-recF dnaAN-recF dnaAp1 3883961 reverse dnaA(3882326,3883729) recF(3880148,3881221) 3880148-3883961 3883729-3883961 GTTCTGGAAAGTCCTGTGGATAAATCGGGAAAATCTGTGAGAAACAGAAGATCTCTTGCGCAGTTTAGGCTATGATCCGCGGTCCCGATCGTTTTGCAGGATCTTGATCGGGCATATAACCGCAGACAGCGGTTCGTGCGTCACCCTCAAGCAGGGTCTTTTCGACGTACGTCAACAATCATGAATGTTTCAGCCTTAGTCATTATCGACTTTTGTTCGAGTGGAGTCCGCCG rpmH-rnpA rpmH-rnpA rpmHp3 3884065 forward rpmH(3884336,3884476) rnpA(3884493,3884852) 3884065-3884852 3884065-3884336 GATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCA rpmH-rnpA rpmH-rnpA rpmHp1 3884111 forward rpmH(3884336,3884476) rnpA(3884493,3884852) 3884111-3884852 3884111-3884336 CCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCCCTGCGAAAAGGTGCGGAAAAGCGCGGTAAATAAGGAAAGAGAATTGACTCCGGAGTGTACAATTATTACAATCCGGCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCA rpmH-rnpA rpmH-rnpA rpmHp2 3884237 forward rpmH(3884336,3884476) rnpA(3884493,3884852) 3884237-3884852 3884237-3884336 GCCTCTTTAATCACCCATGGCTTCGGTGTCCATCGTTTCATTTTTCGGCGGATATCCAATAAAGCCATTGAATTTATTCAAGTTTAGGTAGAAATCGCCA tnaCAB tnaCAB tnaCp 3888411 forward tnaC(3888435,3888509) tnaB(3890236,3891483) rho-dependent(3888462,3888509) 3888411-3888509 3888411-3888435 GTGTCTTGCGAGGATAAGTGCATTA tnaCAB tnaC tnaCp 3888411 forward tnaC(3888435,3888509) tnaC(3888435,3888509) rho-dependent(3888462,3888509) 3888411-3888509 3888411-3888435 GTGTCTTGCGAGGATAAGTGCATTA yieEF yieEF yieEp 3893829 forward yieE(3893881,3894630) yieF(3894652,3895218) 3893829-3895218 3893829-3893881 AGTAAATGATTACTCTTGTATTCATAATGGACCATTAAGCATGGAGCGAAAAA bglGFB bglGFB bglGp1 3906697 reverse bglG(3905731,3906567) bglB(3902289,3903701) rho-independent(3902249,3902292) 3902249-3906697 3906567-3906697 GAACCTGGATGTTCGTTATAAAAACCATTAATAAATGACTGGATTGTTACTGCATTCGCAGGCAAAACCTGACATAACCAGAGAATACTGGTGAAGTCGGGTTTTTTTGTTTATAAAAAAGGTCCTTGCTA 3902249-3902289 ATTATCGTCGCATTCAGAACAGTCTGGATGCGATGCGTTAA bglGFB bglGFB bglGp1 3906697 reverse bglG(3905731,3906567) bglB(3902289,3903701) rho-independent(3906593,3906634) 3906593-3906697 3906567-3906697 GAACCTGGATGTTCGTTATAAAAACCATTAATAAATGACTGGATTGTTACTGCATTCGCAGGCAAAACCTGACATAACCAGAGAATACTGGTGAAGTCGGGTTTTTTTGTTTATAAAAAAGGTCCTTGCTA bglGFB bglG bglGp1 3906697 reverse bglG(3905731,3906567) bglG(3905731,3906567) rho-independent(3905636,3905687) 3905636-3906697 3906567-3906697 GAACCTGGATGTTCGTTATAAAAACCATTAATAAATGACTGGATTGTTACTGCATTCGCAGGCAAAACCTGACATAACCAGAGAATACTGGTGAAGTCGGGTTTTTTTGTTTATAAAAAAGGTCCTTGCTA 3905636-3905731 AAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTT bglGFB bglG bglGp2 3906717 reverse bglG(3905731,3906567) bglG(3905731,3906567) rho-independent(3905636,3905687) 3905636-3906717 3906567-3906717 ACGCAATTAAATTAATTTCCGAACCTGGATGTTCGTTATAAAAACCATTAATAAATGACTGGATTGTTACTGCATTCGCAGGCAAAACCTGACATAACCAGAGAATACTGGTGAAGTCGGGTTTTTTTGTTTATAAAAAAGGTCCTTGCTA 3905636-3905731 AAATATTATTACTGAGTAAAGGATTGTTACCGCACTAAGCGGGCAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGGTTTT pstSCAB-phoU phoU phoUp 3907665 reverse phoU(3906853,3907578) phoU(3906853,3907578) 3906853-3907665 3907578-3907665 CAACACGGACGATCTGTTCACCAAGCCAGCGAAGAAACAAACAGAAGACTACATCACCGGTCGTTACGGTTGATTCAGGAGTGCGTTA pstSCAB-phoU pstB-phoU pstBp3 3908447 reverse pstB(3907593,3908366) phoU(3906853,3907578) 3906853-3908447 3908366-3908447 GGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGCACGATGAGGAAAAGATTGCAA pstSCAB-phoU pstB-phoU pstBp1 3908556 reverse pstB(3907593,3908366) phoU(3906853,3907578) 3906853-3908556 3908366-3908556 ACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGCACGATGAGGAAAAGATTGCAA pstSCAB-phoU pstB-phoU pstBp2 3908556 reverse pstB(3907593,3908366) phoU(3906853,3907578) 3906853-3908556 3908366-3908556 ACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGGACCGACCGAGCGCCTTTTTGACTCTGTACACGGTTAACACTTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGTAAGCCTGATTAGCGAAGTGCATCAGGCACGATGAGGAAAAGATTGCAA pstSCAB-phoU pstCAB-phoU pstCp 3910542 reverse pstC(3909439,3910398) phoU(3906853,3907578) 3906853-3910542 3910398-3910542 GGTTCGCGCTGCGTGGAAGACCAATATTAAAGACAGTAGCGGTAAGCCGCTGTACTAATAAAACTCCAGGCCGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTA pstSCAB-phoU pstCAB-phoU pstCp2 3910542 reverse pstC(3909439,3910398) phoU(3906853,3907578) 3906853-3910542 3910398-3910542 GGTTCGCGCTGCGTGGAAGACCAATATTAAAGACAGTAGCGGTAAGCCGCTGTACTAATAAAACTCCAGGCCGGGTACGGTGTTTTACGCCGCATCCGGCATTACAAAATGACTTTGTAAACGCGTTTAACTGAAGAGTAACTTA pstSCAB-phoU pstSCAB-phoU pstSp 3911568 reverse pstS(3910485,3911525) phoU(3906853,3907578) 3906853-3911568 3911525-3911568 GTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTA pstSCAB-phoU pstS pstSp 3911568 reverse pstS(3910485,3911525) pstS(3910485,3911525) rho-independent(3910443,3910473) 3910443-3911568 3911525-3911568 GTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTA 3910443-3910485 ATAAAACTCCAGGCCGGGTACGGTGTTTTACGCCGCATCCGGC pstSCAB-phoU pstSCA pstSp 3911568 reverse pstS(3910485,3911525) pstA(3908549,3909439) rho-independent(3908495,3908517) 3908495-3911568 3911525-3911568 GTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTA 3908495-3908549 ATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGG pstSCAB-phoU pstS pstSp2 3911568 reverse pstS(3910485,3911525) pstS(3910485,3911525) rho-independent(3910443,3910473) 3910443-3911568 3911525-3911568 GTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTA 3910443-3910485 ATAAAACTCCAGGCCGGGTACGGTGTTTTACGCCGCATCCGGC pstSCAB-phoU pstSCAB-phoU pstSp2 3911568 reverse pstS(3910485,3911525) phoU(3906853,3907578) 3906853-3911568 3911525-3911568 GTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTA pstSCAB-phoU pstSCA pstSp2 3911568 reverse pstS(3910485,3911525) pstA(3908549,3909439) rho-independent(3908495,3908517) 3908495-3911568 3911525-3911568 GTAGCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTA 3908495-3908549 ATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGG glmUS glmUS glmUp1 3915223 reverse glmU(3913830,3915200) glmS(3911839,3913668) rho-independent(3911810,3911830) 3911810-3915223 3915200-3915223 CTCAAATTACAGTCAGGACGCGTA 3911810-3911839 ATAAATGGATGCCCTGCGTAAGCGGGGCAT glmUS glmUS glmUp2 3915326 reverse glmU(3913830,3915200) glmS(3911839,3913668) rho-independent(3911810,3911830) 3911810-3915326 3915200-3915326 GCTTTCGTCAGCGGGGATAATCCGTTATTGAACAATTTATCCTCTGTCCATTTCACGATGAAAAAAATGTAGTTTTTTCAAGGTGAAGCGGTTTAAATTCGTTCTCAAATTACAGTCAGGACGCGTA 3911810-3911839 ATAAATGGATGCCCTGCGTAAGCGGGGCAT atpIBEFHAGDC atpBEFHAGDC atpBp2 3922134 reverse atpB(3921236,3922051) atpC(3915553,3915972) rho-independent(3915508,3915530) 3915508-3922134 3922051-3922134 CCGCTGATCGTTACGTGGGTTTTGGTGCTGGTGGTTCAGATACTGGCACCGGCTGTAATTAACAACAAAGGGTAAAAGGCATCA 3915508-3915553 ACACCGGCTTGAAAAGCACAAAAGCCAGTCTGGAAACAGGCTGGCT atpIBEFHAGDC atpBEFHAGDC atpBp1 3922270 reverse atpB(3921236,3922051) atpC(3915553,3915972) rho-independent(3915508,3915530) 3915508-3922270 3922051-3922270 TGCCTGGCGTCACCAGGCGCATACACCAGCGAAAGGCCGGGTGGCCTGGACATTCGCATTTGGCGAAGCTTTCAAAGTTCTGGCGATGTTGGTGTTACTGGTGGTGGCGTTGGCGGTTTTAAAGGCGGTATTCTTGCCGCTGATCGTTACGTGGGTTTTGGTGCTGGTGGTTCAGATACTGGCACCGGCTGTAATTAACAACAAAGGGTAAAAGGCATCA 3915508-3915553 ACACCGGCTTGAAAAGCACAAAAGCCAGTCTGGAAACAGGCTGGCT atpIBEFHAGDC atpIBEFHAGDC atpIp 3922525 reverse atpI(3922060,3922440) atpC(3915553,3915972) rho-independent(3915508,3915530) 3915508-3922525 3922440-3922525 GCTTTTTGATGCTTGACTCTAAGCCTTAAAGAAAGTTTTATACGACACGCGGCATACCTCGAAGGGAGCAGGAGTGAAAAACGTGA 3915508-3915553 ACACCGGCTTGAAAAGCACAAAAGCCAGTCTGGAAACAGGCTGGCT asnC-mioC-mnmG-rsmG mnmG-rsmG mnmGp 3925674 reverse mnmG(3923744,3925633) rsmG(3923057,3923680) 3923057-3925674 3925633-3925674 CTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCA asnC-mioC-mnmG-rsmG mnmG-rsmG mnmGp2 3925674 reverse mnmG(3923744,3925633) rsmG(3923057,3923680) 3923057-3925674 3925633-3925674 CTTCAATCCATTTTCATACCGCGTTATGCGAGGCAATCACCA asnC-mioC-mnmG-rsmG mioC mioCp 3926475 reverse mioC(3926012,3926455) mioC(3926012,3926455) 3926012-3926475 3926455-3926475 CTTAATAAAGGTGGCGGTTTA asnC-mioC-mnmG-rsmG asnC asnCp 3927031 reverse asnC(3926545,3927003) asnC(3926545,3927003) 3926545-3927031 3927003-3927031 GAATCATCAATCCGCATAAGAAAATCCTA asnC-mioC-mnmG-rsmG asnC-mioC asnCp 3927031 reverse asnC(3926545,3927003) mioC(3926012,3926455) 3926012-3927031 3927003-3927031 GAATCATCAATCCGCATAAGAAAATCCTA asnC-mioC-mnmG-rsmG asnC-mioC-mnmG asnCp 3927031 reverse asnC(3926545,3927003) mnmG(3923744,3925633) rho-independent(3923705,3923732) 3923705-3927031 3927003-3927031 GAATCATCAATCCGCATAAGAAAATCCTA 3923705-3923744 ACGCATTAAAAATGCCTGGTAAGCACCCGCTTACCAGGCA asnA asnA asnAp 3927129 forward asnA(3927155,3928147) asnA(3927155,3928147) 3927129-3928147 3927129-3927155 AGCAACAGGACGCAGGAGTATAAAAAA kup kup kupp1 3931103 forward kup(3931316,3933184) kup(3931316,3933184) 3931103-3933184 3931103-3931316 GCGTCCTTTCGTCAAAAGTTCTGCGTAAATTGCGAGTATAGACGTTTCTTGCTGGTGGCTAAAATAGTCTCAAAGGGGGGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACTAGTCTA ravA-viaA ravA-viaA ravAp 3931128 reverse ravA(3929597,3931093) viaA(3928152,3929603) 3928152-3931128 3931093-3931128 ACGCAGAACTTTTGACGAAAGGACGCCACTTCATTA kup kup kupp2 3931181 forward kup(3931316,3933184) kup(3931316,3933184) 3931181-3933184 3931181-3931316 GGGTATTTTTCTTTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACTAGTCTA kup kup kupp3 3931265 forward kup(3931316,3933184) kup(3931316,3933184) 3931265-3933184 3931265-3931316 GTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACTAGTCTA rbsDACBKR rbsDACBKR rbsDp 3933322 forward rbsD(3933351,3933770) rbsR(3938227,3939219) 3933322-3939219 3933322-3933351 AGCGAAACGTTTCGCTGATGGAGAAAAAAA rrsC-gltU-rrlC-rrfC rrsC-gltU-rrlC-rrfC rrsCp1 3941516 forward rrsC(3941808,3943349) rrfC(3946700,3946819) rho-independent(3947032,3947067) 3941516-3947067 3941516-3941808 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 3946819-3947067 TCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGATTTTTTTT rrsC-gltU-rrlC-rrfC rrsC-gltU-rrlC-rrfC rrsCp 3941516 forward rrsC(3941808,3943349) rrfC(3946700,3946819) rho-independent(3947032,3947067) 3941516-3947067 3941516-3941808 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 3946819-3947067 TCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGATTTTTTTT rrsC-gltU-rrlC-rrfC rrsC-gltU-rrlC-rrfC rrsCp2 3941633 forward rrsC(3941808,3943349) rrfC(3946700,3946819) rho-independent(3947032,3947067) 3941633-3947067 3941633-3941808 CCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 3946819-3947067 TCAAATTAAGCAGTAAGCCGGTCATAAAACCGGTGGTTGTAAAAGAATTCGGTGGAGCGGTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCGCCACCCTAATTAGGGGCGTAGTTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCAGAAATCATCCTTAGCGAAAGCTAAGGATTTTTTTT hdfR hdfR hdfRp 3948021 reverse hdfR(3947128,3947967) hdfR(3947128,3947967) 3947128-3948021 3947967-3948021 AGTGTAAAACAAAACATTTAAATCATAACGACAAATAATTTTGCGGAGAGCACTG ilvLXGMEDA ilvLXG_1G_2MEDA ilvLp1 3950218 forward ilvL(3950322,3950420) ilvA(3955331,3956875) rho-independent(3956967,3956985) 3950218-3956985 3950218-3950322 ATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAAACCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAA 3956875-3956985 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCT ilvLXGMEDA ilvLXG_1G_2MEDA ilvLp1 3950218 forward ilvL(3950322,3950420) ilvA(3955331,3956875) rho-dependent(3957062,3957123) 3950218-3957123 3950218-3950322 ATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAAACCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAA 3956875-3957123 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGCTGTTTTCCAGCACCACTTCCGGCAACAATGCCACGCCACAGCCGAGTGCCA ilvLXGMEDA ilvL ilvLp1 3950218 forward ilvL(3950322,3950420) ilvL(3950322,3950420) rho-independent(3950320,3950471) 3950218-3950471 3950218-3950322 ATTAAACGCATCATAAAAATCGGCCAAAAAATATCTTGTACTATTTACAAAACCTATGGTAACTCTTTAGGCATTCCTTCGAACAAGATGCAAGAAAAGACAAAA 3950420-3950471 GAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTT ilvLXGMEDA ilvLXG_1G_2MEDA ilvLp2 3950290 forward ilvL(3950322,3950420) ilvA(3955331,3956875) rho-independent(3956967,3956985) 3950290-3956985 3950290-3950322 ATTCCTTCGAACAAGATGCAAGAAAAGACAAAA 3956875-3956985 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCT ilvLXGMEDA ilvLXG_1G_2MEDA ilvLp2 3950290 forward ilvL(3950322,3950420) ilvA(3955331,3956875) rho-dependent(3957062,3957123) 3950290-3957123 3950290-3950322 ATTCCTTCGAACAAGATGCAAGAAAAGACAAAA 3956875-3957123 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGCTGTTTTCCAGCACCACTTCCGGCAACAATGCCACGCCACAGCCGAGTGCCA ilvLXGMEDA ilvL ilvLp2 3950290 forward ilvL(3950322,3950420) ilvL(3950322,3950420) rho-independent(3950320,3950471) 3950290-3950471 3950290-3950322 ATTCCTTCGAACAAGATGCAAGAAAAGACAAAA 3950420-3950471 GAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTT ilvLXGMEDA ilvEDA ilvEp3 3952388 forward ilvE(3952484,3953413) ilvA(3955331,3956875) rho-independent(3956967,3956985) 3952388-3956985 3952388-3952484 AGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGAATATAAAAA 3956875-3956985 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCT ilvLXGMEDA ilvEDA ilvEp3 3952388 forward ilvE(3952484,3953413) ilvA(3955331,3956875) rho-dependent(3957062,3957123) 3952388-3957123 3952388-3952484 AGTTAAATAAACTGGTGGACGTCGCACACGTTGCCATCTGCCAGAGCACAACCACATCACAACAAATCCGCGCCTGAGCGCAAAAGGAATATAAAAA 3956875-3957123 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGCTGTTTTCCAGCACCACTTCCGGCAACAATGCCACGCCACAGCCGAGTGCCA ilvLXGMEDA ilvA ilvAp 3955235 forward ilvA(3955331,3956875) ilvA(3955331,3956875) rho-independent(3956967,3956985) 3955235-3956985 3955235-3955331 ACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAA 3956875-3956985 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCT ilvLXGMEDA ilvA ilvAp 3955235 forward ilvA(3955331,3956875) ilvA(3955331,3956875) rho-dependent(3957062,3957123) 3955235-3957123 3955235-3955331 ACGTCAGGTCTCCTTTGCCCTGCGTGCTTATGCCAGCCTGGCAACCAGCGCCGACAAAGGCGCGGTGCGCGATAAATCGAAACTGGGGGGTTAATAA 3956875-3957123 GGGAAAAATGCCTGATAGCGCTTCGCTTATCAGGCCTACCCGCGCGACAACGTCATTTGTGGTTCGGCAAAATCTTCCAGAATGCCTCAATTAGCGGCTCATGTAGCCGCTTTTTCTGCGCACACACGCCCAGCTCAAACGGCGTTTTCTCATCGCTGCGCTCTAAAATCATCACGCGGTTACGCACCGGTTCGGGGCTGTTTTCCAGCACCACTTCCGGCAACAATGCCACGCCACAGCCGAGTGCCA ilvY ilvY ilvYp1 3957867 reverse ilvY(3956927,3957820) ilvY(3956927,3957820) rho-independent(3956883,3956909) 3956883-3957867 3957820-3957867 AACGTCACATTGCAATTTTTGCAACGTCAACATCGAGGGCTGTCCCTG 3956883-3956927 ACGTTGTCGCGCGGGTAGGCCTGATAAGCGAAGCGCTATCAGGCA ilvY ilvY ilvYp2 3957867 reverse ilvY(3956927,3957820) ilvY(3956927,3957820) rho-independent(3956883,3956909) 3956883-3957867 3957820-3957867 AACGTCACATTGCAATTTTTGCAACGTCAACATCGAGGGCTGTCCCTG 3956883-3956927 ACGTTGTCGCGCGGGTAGGCCTGATAAGCGAAGCGCTATCAGGCA ilvC ilvC ilvCp 3957912 forward ilvC(3957970,3959445) ilvC(3957970,3959445) 3957912-3959445 3957912-3957970 ATTCAATCTCGCAAACGCGAACCGAACAATAAGAAGCACAACATCACGAGGAATCACCA ppiC ppiC ppiCp 3959841 reverse ppiC(3959532,3959813) ppiC(3959532,3959813) 3959532-3959841 3959813-3959841 CTGACAATTATTCACTCAAGGCACGATCA rep rep repp 3960647 forward rep(3960677,3962698) rep(3960677,3962698) 3960647-3962698 3960647-3960677 CCCCCCGTTCGAAGATTGAGCAATACACCTA trxA trxA trxAp1 3965647 forward trxA(3965761,3966090) trxA(3965761,3966090) rho-independent(3966105,3966136) 3965647-3966136 3965647-3965761 AGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATA 3966090-3966136 AGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCG trxA trxA trxAp3 3965650 forward trxA(3965761,3966090) trxA(3965761,3966090) rho-independent(3966105,3966136) 3965650-3966136 3965650-3965761 TTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATA 3966090-3966136 AGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCG trxA trxA trxAp2 3965687 forward trxA(3965761,3966090) trxA(3965761,3966090) rho-independent(3966105,3966136) 3965687-3966136 3965687-3965761 AGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATA 3966090-3966136 AGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCG rhoL-rho rhoL-rho rhoLp 3966162 forward rhoL(3966231,3966332) rho(3966417,3967676) rho-independent(3967677,3967731) 3966162-3967731 3966162-3966231 GACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAA 3967676-3967731 AATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCT rhoL-rho rhoL rhoLp 3966162 forward rhoL(3966231,3966332) rhoL(3966231,3966332) rho-dependent(3966305,3966335) 3966162-3966335 3966162-3966231 GACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAA 3966332-3966335 ACCG rhoL-rho rhoL rhoLp 3966162 forward rhoL(3966231,3966332) rhoL(3966231,3966332) rho-dependent(3966342,3966359) 3966162-3966359 3966162-3966231 GACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAA 3966332-3966359 ACCGTAAACAGGCATGGATGATCCTGCC rhoL-rho rhoL rhoLp 3966162 forward rhoL(3966231,3966332) rhoL(3966231,3966332) rho-independent(3966491,3966513) 3966162-3966513 3966162-3966231 GACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAA 3966332-3966513 ACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGG rhoL-rho rhoL rhoLp 3966162 forward rhoL(3966231,3966332) rhoL(3966231,3966332) rho-independent(3966718,3966740) 3966162-3966740 3966162-3966231 GACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAA 3966332-3966740 ACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAA rhoL-rho rhoL rhoLp 3966162 forward rhoL(3966231,3966332) rhoL(3966231,3966332) rho-independent(3966856,3966876) 3966162-3966876 3966162-3966231 GACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAA 3966332-3966876 ACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACGAAGTTAACTTCGACAAACCTGAAAACGCCCGCAACAAAATCCTCTTTGAGAACTTAACCCCGCTGCACGCAAACTCTCGTCTGCGTATGGAACGTGGTAACGGTTCTA rfe-wzzE-wecBC-rffGHC-wecE-wzxE-wecF-wzyE-rffM rfe-wzzE-wecBC-rffGHC-wecE-wzxE-wecF-wzyE-rffM rfep 3967800 forward rfe(3967916,3969019) rffM(3979956,3980696) 3967800-3980696 3967800-3967916 CATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACTTTCCCTTCTGAATAAAGGTCTTCGTGGTTATACTTCTGCTAATAATTTTCTCTGAGAGCATGCATTG argX-hisR-leuT-proM argX-hisR-leuT-proM argXp 3982364 forward argX(3982375,3982451) proM(3982735,3982811) rho-independent(3982813,3982841) 3982364-3982841 3982364-3982375 AACGGCGCTAAG 3982811-3982841 AATTTTGAACCCCGCTTCGGCGGGGTTTTTT aslB aslB aslBp 3982781 forward aslB(3982958,3984193) aslB(3982958,3984193) 3982781-3984193 3982781-3982958 GTCGGAGGTTCGAATCCTCTCTCGCCGACCAATTTTGAACCCCGCTTCGGCGGGGTTTTTTGTTTTCTGTGCATTTCGTCACCCTCCCTTCGCAATAAACGCCCGTAATAACTCATTGCCCCACGGTATGATTTCGCCCTTAACGTATTGAAGGATGACTTCAGGCAAGGAGCGACCA glmZ glmZ glmZp 3986432 forward glmZ(3986432,3986603) glmZ(3986432,3986603) 3986432-3986603 3986432-3986432 G cyaA cyaA cyaAp2 3990774 forward cyaA(3991153,3993699) cyaA(3991153,3993699) 3990774-3993699 3990774-3991153 ACCGTCATTATCATCCGTGGTCCATCCTAACATCCTTGCCAGAGTGATGTCAGTGTTGTGGTGAAACGTAGACGCCTGCGCAAACCGTAAAATGAGGTCTGGCAGTGGATCCTGACAGGCGTTTCACGCCGTTGTAATAAGGAATTTACAGAGAATAAACGGTGCTACACTTGTATGTAGCGCATCTTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAACCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGTTGGCGGAATCACAGTCATGACGGGTAGCAAATCAGGCGATACGTCT cyaA cyaA cyaAp1 3990790 forward cyaA(3991153,3993699) cyaA(3991153,3993699) 3990790-3993699 3990790-3991153 GTGGTCCATCCTAACATCCTTGCCAGAGTGATGTCAGTGTTGTGGTGAAACGTAGACGCCTGCGCAAACCGTAAAATGAGGTCTGGCAGTGGATCCTGACAGGCGTTTCACGCCGTTGTAATAAGGAATTTACAGAGAATAAACGGTGCTACACTTGTATGTAGCGCATCTTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAACCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGTTGGCGGAATCACAGTCATGACGGGTAGCAAATCAGGCGATACGTCT cyaA cyaA cyaAp 3990999 forward cyaA(3991153,3993699) cyaA(3991153,3993699) 3990999-3993699 3990999-3991153 GTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAACCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGTTGGCGGAATCACAGTCATGACGGGTAGCAAATCAGGCGATACGTCT yifL-dapF-yigA-xerC-yigB yifL-dapF-yigA-xerC-yigB yifLp 3994492 forward yifL(3994522,3994725) yigB(3997183,3997899) 3994492-3997899 3994492-3994522 GAAAGCGATGAACTTTACAGGCAATCCATAA uvrD uvrD uvrDp1 3997907 forward uvrD(3997983,4000145) uvrD(3997983,4000145) rho-independent(4000150,4000177) 3997907-4000177 3997907-3997983 ATCTGTATATATACCCAGCTTTTTGGCGGAGGGCGTTGCGCTTCTCCGCCCAACCTATTTTTACGCGGCGGTGCCAA 4000145-4000177 ACGTTGCCGGATGCGGTGCTGCGCACCTTATTT uvrD uvrD uvrDp2 3997971 forward uvrD(3997983,4000145) uvrD(3997983,4000145) rho-independent(4000150,4000177) 3997971-4000177 3997971-3997983 GCGGCGGTGCCAA 4000145-4000177 ACGTTGCCGGATGCGGTGCTGCGCACCTTATTT corA corA corAp 4001194 forward corA(4001426,4002376) corA(4001426,4002376) 4001194-4002376 4001194-4001426 GATCACTCTAAGAGGACATTCGCCTTGGACACACCCAGTAGATACTGGCTCACTATCCTGTCATCCAGGATCAACTCCTAAGGCTATCCCTTTTTGCTGATAGCCTTAGCGGTTGTCAGCGACCTCAATTTTTCCCGTCGCGCTGAGTCAGGCTGTTTAATGGTCTGAAACCCAATTTGTTTCTGTGTGCCCACCGAACTGTCCGATATTTTAAGCATTGGGAGTCCCGGTCA yigI yigI yigIp 4004724 reverse yigI(4004230,4004697) yigI(4004230,4004697) 4004230-4004724 4004697-4004724 CATTAACCAATGAAGTGTAAGGATGATA pldA pldA pldAp 4004814 forward pldA(4004862,4005731) pldA(4004862,4005731) rho-independent(4005815,4005836) 4004814-4005836 4004814-4004862 CAGAAAAATATTCACCTTATCAATAATTCGTTACGGAGAACACGACCGA 4005731-4005836 ATGAACGGTTGAGTGGTTGGCAAATCTGGAATCCAGCATCCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTG recQ recQ recQp 4005836 forward recQ(4005864,4007693) recQ(4005864,4007693) rho-independent(4007726,4007763) 4005836-4007763 4005836-4005864 GTTTTTATTTCAGGCAATCGGGGTGAATG 4007693-4007763 GTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCCCCGCGAGTCAAATGTATGTTGA metR metR metRp2 4012837 reverse metR(4011863,4012816) metR(4011863,4012816) 4011863-4012837 4012816-4012837 ATGCCGAAGTGAAGGACTTTCA metR metR metRp1 4012855 reverse metR(4011863,4012816) metR(4011863,4012816) 4011863-4012855 4012816-4012855 CTCAAGCGCAAATTATTCATGCCGAAGTGAAGGACTTTCA metE metE metEp 4012884 forward metE(4013053,4015314) metE(4013053,4015314) 4012884-4015314 4012884-4013053 GTGTAAACATCTGGACGGCTAAAATCCTTCGTCTTTTAAATTTATGGTGCGTTGGCTGCGTTTCTCCACCCCGGTCACTTACTTCAGTAAGCTCCCGGGGATGAATAAACTTGCCGCCTTCCCTAAATTCAAAATCCATAGGATTTACATATAATTAGAGGAAGAAAAAA ysgA ysgA ysgAp 4016343 reverse ysgA(4015354,4016169) ysgA(4015354,4016169) 4015354-4016343 4016169-4016343 CCATGACGCAAATGCGTTGCATAAATTTACCCACCAAAAGTGATGCAAATCACATAAATCACCCTTCATTCTGCAGGACTGCATAAAAGATGAGCCGATTCAGGCAATGTGATTTGTTGCATGCTGACTATAGTTAACATTGCGCAACATTTTTATAAGGGTACGGAGAATACCA udp udp udpP 4016391 forward udp(4016431,4017192) udp(4016431,4017192) 4016391-4017192 4016391-4016431 TTGCTTCTTCTGACTAAACCGATTCACAGAGGAGTTGTATA esrE esrE esrEp 4019978 forward esrE(4019978,4020229) esrE(4019978,4020229) 4019978-4020229 4019978-4019978 C tatABCD tatABC tatAp1 4021909 forward tatA(4021945,4022214) tatD(4023554,4024336) 4021909-4024336 4021909-4021945 CTTTGTTTAATCATCATCTACCACAGAGGAACATGTA tatABCD tatABC tatAp1 4021909 forward tatA(4021945,4022214) tatC(4022736,4023512) rho-independent(4023516,4023537) 4021909-4023537 4021909-4021945 CTTTGTTTAATCATCATCTACCACAGAGGAACATGTA 4023512-4023537 AATTCAACCGCCCGTCAGGGCGGTTG fre fre frep1 4026443 forward fre(4026527,4027228) fre(4026527,4027228) 4026443-4027228 4026443-4026527 GATGAACTGGCTATTTTTAACAACGGTAAAAGCGCCTGATGCGCGTTTGTTTTGCCCTATTTATCGATCCGACAGAGAAAGCGCA fre fre frep2 4026485 forward fre(4026527,4027228) fre(4026527,4027228) 4026485-4027228 4026485-4026527 GCGTTTGTTTTGCCCTATTTATCGATCCGACAGAGAAAGCGCA fadBA fadBA fadBp 4031013 reverse fadB(4028782,4030971) fadA(4027609,4028772) 4027609-4031013 4030971-4031013 ATCTGGTACGACCAGATCACCTTGCGGATTCAGGAGACTGACA pepQ-yigZ-trkH-hemG pepQ-yigZ-trkH-hemG pepQp 4031147 forward pepQ(4031161,4032492) hemG(4034608,4035153) 4031147-4035153 4031147-4031161 CAGAAGGGTAAAAAA rrsA-ileT-alaT-rrlA-rrfA rrsA-ileT-alaT-rrlA-rrfA rrsAp1 4035239 forward rrsA(4035531,4037072) rrfA(4040517,4040636) 4035239-4040636 4035239-4035531 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA rrsA-ileT-alaT-rrlA-rrfA rrsA-ileT-alaT-rrlA-rrfA rrsAp 4035239 forward rrsA(4035531,4037072) rrfA(4040517,4040636) 4035239-4040636 4035239-4035531 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA rrsA-ileT-alaT-rrlA-rrfA rrsA-ileT-alaT-rrlA-rrfA rrsAp2 4035356 forward rrsA(4035531,4037072) rrfA(4040517,4040636) 4035356-4040636 4035356-4035531 CCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA mobAB mobAB mobAp1 4042030 reverse mobA(4041415,4041999) mobB(4040906,4041433) 4040906-4042030 4041999-4042030 GGTCAATCCCACAATAAAAGAGGCGATATCGG yihD yihD yihDp 4042049 forward yihD(4042069,4042338) yihD(4042069,4042338) 4042049-4042338 4042049-4042069 CAAGAGTAAGGAGCATCACTA mobAB mobAB mobAp2 4042121 reverse mobA(4041415,4041999) mobB(4040906,4041433) 4040906-4042121 4041999-4042121 TGCCAGGCTGGCTGGAGGAGTTCAATAACTTCATTCAGACGTTTACATTTCATAGTGATGCTCCTTACTCTTGAGACAGACACGTTAGCAGGGTCAATCCCACAATAAAAGAGGCGATATCGG srkA-dsbA srkA-dsbA srkAp 4042391 forward srkA(4042415,4043401) dsbA(4043418,4044044) 4042391-4044044 4042391-4042415 TCGTAATGTTTTCCGGATGATGGGA srkA-dsbA dsbA dsbAp 4043377 forward dsbA(4043418,4044044) dsbA(4043418,4044044) 4043377-4044044 4043377-4043418 TTTGCAATTAACACCTATGTATTAATCGGAGAGAGTAGATCA yihG yihG yihGp 4046652 reverse yihG(4045670,4046602) yihG(4045670,4046602) 4045670-4046652 4046602-4046652 GGTCGTTTTCTGCTAAAATCTGCGCCTTGCGCTTCTTTAGCGCACTGTCTA polA polA polAp 4046940 forward polA(4046966,4049752) polA(4046966,4049752) 4046940-4049752 4046940-4046966 TAATCTGATAAACAGGCACGGACATTA spf spf spfp 4049899 forward spf(4049899,4050009) spf(4049899,4050009) rho-independent(4049962,4050016) 4049899-4050016 4049899-4049899 G 4050009-4050016 TGGGCGAA csrC csrC csrCp 4051036 forward csrC(4051036,4051281) csrC(4051036,4051281) rho-independent(4051241,4051280) 4051036-4051280 4051036-4051036 A yihI yihI yihIp 4051308 forward yihI(4051347,4051856) yihI(4051347,4051856) 4051308-4051856 4051308-4051347 AAATCTATACTGAATAAAACGGCTAAAAGACGAACCATTA hemN hemN hemNp 4051943 forward hemN(4052045,4053418) hemN(4052045,4053418) 4051943-4053418 4051943-4052045 GTTGTCGCGGCGACAAAAGTGGCTGCGCAACCGGCTGATGACCCGAAACGGGCATCCGCCGGTACGCCGTAGCCGCCAGAGACGCCATCGGAAGGAGTGAGCA glnALG glnLG glnLp 4056371 reverse glnL(4055290,4056339) glnG(4053869,4055278) 4053869-4056371 4056339-4056371 AAAATGGTGCAACCTGTTCAGGAGACTGCTTTA glnALG glnA glnAp2 4058107 reverse glnA(4056625,4058034) glnA(4056625,4058034) rho-independent(4055990,4056009) 4055990-4058107 4058034-4058107 TACGGCGACACGGCCAAAATAATTGCAGATTTCGTTACCACGACGACCATGACCAATCCAGGAGAGTTAAAGTA 4055990-4056625 AGTGTTTTAGTTGCCGTGGAAACTTTTCGCCTGTCTCTGGCAGGCCTGGGATCGGTGGCAAGCACATCACGCCGGATGCGACGCAAATGCGTCTTATCCGGCCTACACGGTGATGATGTGGTAGGCCGGAGCAGGTGAGTCGCTCTCCAACGTGAAGTTTGTCAGCTATCTGTAGCCCATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTTATCCGTAAAAAGCTATAATGCACTAAAATGGTGCAACCTGTTCAGGAGACTGCTTTATGGCAACAGGCACGCAGCCCGATGCTGGGCAGATCCTCAACTCGCTGATTAACAGTATTTTGTTAATCGATGACAACCTGGCGATCCATTACGCCAACCCTGCCGCGCAACAACTGCTCGCCCAAAGCTCCCGCAAATTGTTTGGTACACCGTTACCGGAACTGTTGAGCTACTTCTCATTAAATATCGAGCTGATGCAAGAAAGTCTGGAGGCGGGGCAAGGTTTTACCGATAACGAAGTGACGCTGGTCATCGACGGGCGCTCGCATATCCTTTCTGTGACGGCCCAGCGTATGCCGGACGGCATGATCCTGCTGGAGATGGCTCCGATGGATAACCAGCGCCGCTT glnALG glnA glnAp2 4058107 reverse glnA(4056625,4058034) glnA(4056625,4058034) rho-independent(4056418,4056472) 4056418-4058107 4058034-4058107 TACGGCGACACGGCCAAAATAATTGCAGATTTCGTTACCACGACGACCATGACCAATCCAGGAGAGTTAAAGTA 4056418-4056625 AGTGTTTTAGTTGCCGTGGAAACTTTTCGCCTGTCTCTGGCAGGCCTGGGATCGGTGGCAAGCACATCACGCCGGATGCGACGCAAATGCGTCTTATCCGGCCTACACGGTGATGATGTGGTAGGCCGGAGCAGGTGAGTCGCTCTCCAACGTGAAGTTTGTCAGCTATCTGTAGCCCATCTCTGCATGGGCTTTTTTCTCCGTCAAT glnALG glnALG glnAp2 4058107 reverse glnA(4056625,4058034) glnG(4053869,4055278) 4053869-4058107 4058034-4058107 TACGGCGACACGGCCAAAATAATTGCAGATTTCGTTACCACGACGACCATGACCAATCCAGGAGAGTTAAAGTA glnALG glnA glnAp1 4058222 reverse glnA(4056625,4058034) glnA(4056625,4058034) rho-independent(4055990,4056009) 4055990-4058222 4058034-4058222 GCACTATATTGGTGCAACATTCACATCGTGGTGCAGCCCTTTTGCACGATGGTGCGCATGATAACGCCTTTTAGGGGCAATTTAAAAGTTGGCACAGATTTCGCTTTATCTTTTTTACGGCGACACGGCCAAAATAATTGCAGATTTCGTTACCACGACGACCATGACCAATCCAGGAGAGTTAAAGTA 4055990-4056625 AGTGTTTTAGTTGCCGTGGAAACTTTTCGCCTGTCTCTGGCAGGCCTGGGATCGGTGGCAAGCACATCACGCCGGATGCGACGCAAATGCGTCTTATCCGGCCTACACGGTGATGATGTGGTAGGCCGGAGCAGGTGAGTCGCTCTCCAACGTGAAGTTTGTCAGCTATCTGTAGCCCATCTCTGCATGGGCTTTTTTCTCCGTCAATTCTCTGATGCTTCGCGCTTTTTATCCGTAAAAAGCTATAATGCACTAAAATGGTGCAACCTGTTCAGGAGACTGCTTTATGGCAACAGGCACGCAGCCCGATGCTGGGCAGATCCTCAACTCGCTGATTAACAGTATTTTGTTAATCGATGACAACCTGGCGATCCATTACGCCAACCCTGCCGCGCAACAACTGCTCGCCCAAAGCTCCCGCAAATTGTTTGGTACACCGTTACCGGAACTGTTGAGCTACTTCTCATTAAATATCGAGCTGATGCAAGAAAGTCTGGAGGCGGGGCAAGGTTTTACCGATAACGAAGTGACGCTGGTCATCGACGGGCGCTCGCATATCCTTTCTGTGACGGCCCAGCGTATGCCGGACGGCATGATCCTGCTGGAGATGGCTCCGATGGATAACCAGCGCCGCTT glnALG glnA glnAp1 4058222 reverse glnA(4056625,4058034) glnA(4056625,4058034) rho-independent(4056418,4056472) 4056418-4058222 4058034-4058222 GCACTATATTGGTGCAACATTCACATCGTGGTGCAGCCCTTTTGCACGATGGTGCGCATGATAACGCCTTTTAGGGGCAATTTAAAAGTTGGCACAGATTTCGCTTTATCTTTTTTACGGCGACACGGCCAAAATAATTGCAGATTTCGTTACCACGACGACCATGACCAATCCAGGAGAGTTAAAGTA 4056418-4056625 AGTGTTTTAGTTGCCGTGGAAACTTTTCGCCTGTCTCTGGCAGGCCTGGGATCGGTGGCAAGCACATCACGCCGGATGCGACGCAAATGCGTCTTATCCGGCCTACACGGTGATGATGTGGTAGGCCGGAGCAGGTGAGTCGCTCTCCAACGTGAAGTTTGTCAGCTATCTGTAGCCCATCTCTGCATGGGCTTTTTTCTCCGTCAAT glnALG glnALG glnAp1 4058222 reverse glnA(4056625,4058034) glnG(4053869,4055278) 4053869-4058222 4058034-4058222 GCACTATATTGGTGCAACATTCACATCGTGGTGCAGCCCTTTTGCACGATGGTGCGCATGATAACGCCTTTTAGGGGCAATTTAAAAGTTGGCACAGATTTCGCTTTATCTTTTTTACGGCGACACGGCCAAAATAATTGCAGATTTCGTTACCACGACGACCATGACCAATCCAGGAGAGTTAAAGTA yihUTS yihUTS yihUp1 4073586 reverse yihU(4072675,4073571) yihS(4070515,4071756) 4070515-4073586 4073571-4073586 ATTCAGGAGAGGGTTA yihUTS yihUTS yihUp2 4073596 reverse yihU(4072675,4073571) yihS(4070515,4071756) 4070515-4073596 4073571-4073596 ACATAACTGTATTCAGGAGAGGGTTA yihUTS yihUTS yihUp3 4073606 reverse yihU(4072675,4073571) yihS(4070515,4071756) 4070515-4073606 4073571-4073606 ACAAAAAGTGACATAACTGTATTCAGGAGAGGGTTA yihUTS yihUTS yihUp4 4073634 reverse yihU(4072675,4073571) yihS(4070515,4071756) 4070515-4073634 4073571-4073634 AACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTGACATAACTGTATTCAGGAGAGGGTTA yihUTS yihUTS yihUp5 4073663 reverse yihU(4072675,4073571) yihS(4070515,4071756) 4070515-4073663 4073571-4073663 TTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTGACATAACTGTATTCAGGAGAGGGTTA yihV-csqR yihV-csqR yihVp1 4073712 forward yihV(4073739,4074635) csqR(4074669,4075454) 4073712-4075454 4073712-4073739 GCATCCCAAAATGTTTAAGGAATGACCA yihV-csqR yihW csqRp 4074641 forward csqR(4074669,4075454) csqR(4074669,4075454) 4074641-4075454 4074641-4074669 CAGGGTGATGGTTTTTCGAGGAATTTTCA yihXY-dtd-fabY yihXY-dtd-fabY yihXp 4075548 forward yihX(4075553,4076152) fabY(4077449,4078438) 4075548-4078438 4075548-4075553 CAAAAA rhaBAD rhaD rhaDp 4094385 reverse rhaD(4093448,4094272) rhaD(4093448,4094272) 4093448-4094385 4094272-4094385 TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACA rhaBAD rhaBAD rhaBp 4097472 reverse rhaB(4095979,4097448) rhaD(4093448,4094272) 4093448-4097472 4097448-4097472 AATGAAATTCAGCAGGATCACATTA rhaSR rhaSR rhaSp 4097711 forward rhaS(4097736,4098572) rhaR(4098646,4099494) 4097711-4099494 4097711-4097736 GTGTTGACGACATCAGGAGGCCAGTA rhaSR rhaSR rhaSp2 4097711 forward rhaS(4097736,4098572) rhaR(4098646,4099494) 4097711-4099494 4097711-4097736 GTGTTGACGACATCAGGAGGCCAGTA rhaT rhaT rhaTp 4100566 reverse rhaT(4099491,4100525) rhaT(4099491,4100525) 4099491-4100566 4100525-4100566 GTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGA sodA sodA sodAp 4100759 forward sodA(4100810,4101430) sodA(4100810,4101430) rho-independent(4101468,4101522) 4100759-4101522 4100759-4100810 ACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATA 4101430-4101522 ATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAAT cpxRA cpxRA cpxRp 4105686 reverse cpxR(4104972,4105670) cpxA(4103602,4104975) 4103602-4105686 4105670-4105686 CGGAGGTATTTAAACAA cpxRA cpxRA cpxRp2 4105686 reverse cpxR(4104972,4105670) cpxA(4103602,4104975) 4103602-4105686 4105670-4105686 CGGAGGTATTTAAACAA cpxPQ cpxPQ cpxPp 4105785 forward cpxP(4105820,4106320) cpxQ(4106330,4106387) rho-independent(4106361,4106379) 4105785-4106379 4105785-4105820 GTTGAATCGCGACAGAAAGATTTTGGGAGCAAATGA pfkA pfkA pfkAp2 4107474 forward pfkA(4107552,4108514) pfkA(4107552,4108514) rho-independent(4108678,4108732) 4107474-4108732 4107474-4107552 ATTCGTTGGATCACTTCGATGTGCAAGAAGACTTCCGGCAACAGATTTCATTTTGCATTCCAAAGTTCAGAGGTAGTCA 4108514-4108732 ATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAAC pfkA pfkA pfkAp 4107474 forward pfkA(4107552,4108514) pfkA(4107552,4108514) rho-independent(4108678,4108732) 4107474-4108732 4107474-4107552 ATTCGTTGGATCACTTCGATGTGCAAGAAGACTTCCGGCAACAGATTTCATTTTGCATTCCAAAGTTCAGAGGTAGTCA 4108514-4108732 ATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAAC pfkA pfkA pfkAp1 4107522 forward pfkA(4107552,4108514) pfkA(4107552,4108514) rho-independent(4108678,4108732) 4107522-4108732 4107522-4107552 CATTTTGCATTCCAAAGTTCAGAGGTAGTCA 4108514-4108732 ATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAAC pfkA pfkA pfkAp3 4107522 forward pfkA(4107552,4108514) pfkA(4107552,4108514) rho-independent(4108678,4108732) 4107522-4108732 4107522-4107552 CATTTTGCATTCCAAAGTTCAGAGGTAGTCA 4108514-4108732 ATGATTTCGGAAAAAGGCAGATTCCTTTACCCTGAAACCGATGACAGAAGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACATGAATTCTGCAATTTATTGAATTTGCAAACTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATGGACAAAGCGCACTTTGTCAGCAATATGAGGCGGATTTCTTCCGCCTTTTTAATCCCTCAAC cdh cdh cdhp 4109907 forward cdh(4109930,4110685) cdh(4109930,4110685) rho-independent(4110708,4110730) 4109907-4110730 4109907-4109930 CTTTGAGGTACAGGGAAAAAAAGA 4110685-4110730 AGGCGAAGAGTTAAGGAAAGTAAGTGCCGGATATGAAATCCGGCAC tpiA tpiA tpiAp1 4111524 reverse tpiA(4110740,4111507) tpiA(4110740,4111507) 4110740-4111524 4111507-4111524 AAGCGTGGAGAATTAAAA tpiA tpiA tpiAp2 4111569 reverse tpiA(4110740,4111507) tpiA(4110740,4111507) 4110740-4111569 4111507-4111569 AGACCTGCTGCCCTGCGGGGCGGCCATCTTCCTTTATTCGCTTATAAGCGTGGAGAATTAAAA tpiA tpiA tpiAp 4111569 reverse tpiA(4110740,4111507) tpiA(4110740,4111507) 4110740-4111569 4111507-4111569 AGACCTGCTGCCCTGCGGGGCGGCCATCTTCCTTTATTCGCTTATAAGCGTGGAGAATTAAAA yiiS-uspD yiiS-uspD yiiSp 4112869 forward yiiS(4112967,4113266) uspD(4113293,4113721) 4112869-4113721 4112869-4112967 ATGGTAATCCATAAGATCATTACTTGTTTGTTCTTCCCTTAACGGCGCATTATTCTTAAGTCGTAATCGACAGAGAGGCGAATATACAGAGGTGCCCTA fpr fpr fprp 4114499 reverse fpr(4113726,4114472) fpr(4113726,4114472) 4113726-4114499 4114472-4114499 GCAAGTCAATCAAAACAGGAGAAAAACA glpFKX glpFKX glpFp 4118161 reverse glpF(4117245,4118090) glpX(4114569,4115579) rho-independent(4114527,4114548) 4114527-4118161 4118090-4118161 ATGCCTACAAGCATCGTGGAGGTCCGTGACTTTCACGCATACAACAAACATTAACTCTTCAGGATCCGATTA 4114527-4114569 ATTGATTTGATCGATTGAGCCTTCCAGTCCTTCGGGACTGGAA menA-rraA rraA rraAp 4119358 reverse rraA(4118845,4119330) rraA(4118845,4119330) 4118845-4119358 4119330-4119358 ATTCTCGCAGCAACTGAATGTTAAGCCTA menA-rraA menA-rraA menAp1 4120398 reverse menA(4119423,4120349) rraA(4118845,4119330) 4118845-4120398 4120349-4120398 CATCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGTATTA menA-rraA menA-rraA menAp2 4120406 reverse menA(4119423,4120349) rraA(4118845,4119330) 4118845-4120406 4120349-4120406 ATCATTTTCATCATTGTTTGATGGGGCTGAAAGGCCCCATTTTTATTGGCGCGTATTA hslVU hslVU hslVp 4122354 reverse hslV(4121757,4122287) hslU(4120416,4121747) rho-independent(4120368,4120385) 4120368-4122354 4122287-4122354 AATTGCATTATGCCCCGTACTTTTGTACGGGGTTTGTACTCTGTATTCGTAACCAAGGGGTCAGCTCG 4120368-4120416 ATCGCGTTCAATCATTTTCATCATTGTTTGATGGGGCTGAAAGGCCCCA cytR cytR cytRp 4124509 reverse cytR(4123431,4124456) cytR(4123431,4124456) 4123431-4124509 4124456-4124509 ATGTGAAGTAAACATGGATGTAGTACGCCTGACGTGCCAGGCGAGGAGTGAGTG rpmE rpmE rpmEp1 4126854 forward rpmE(4127013,4127225) rpmE(4127013,4127225) rho-independent(4127241,4127262) 4126854-4127262 4126854-4127013 GCCGTAGAAGAGTGCGGATCAGTTTGCATACGCTGGTTAATTTCTGTATGATTTCGCGCCTTCGTACGAAATGATCGTATTGAAGCTATACTTTTAACATCGCGTGGTGTCTGGCGTTAGGGCTGGAAGAGCGACGCGGCCTTAAACCGAGGTTTTCCCA 4127225-4127262 AGACCGGATTTCCGAAAAAAGCGCCGCACGGCGCTTTT rpmE rpmE rpmEp2 4126908 forward rpmE(4127013,4127225) rpmE(4127013,4127225) rho-independent(4127241,4127262) 4126908-4127262 4126908-4127013 CGCGCCTTCGTACGAAATGATCGTATTGAAGCTATACTTTTAACATCGCGTGGTGTCTGGCGTTAGGGCTGGAAGAGCGACGCGGCCTTAAACCGAGGTTTTCCCA 4127225-4127262 AGACCGGATTTCCGAAAAAAGCGCCGCACGGCGCTTTT metJ metJ metJp3 4128466 reverse metJ(4128078,4128395) metJ(4128078,4128395) 4128078-4128466 4128395-4128466 GTTTACGGTCAGTACCCACATCAACTGTGTGGTCTGGTCTCAATTTATTGACGAAGAGGATTAAGTATCTCA metJ metJ metJp2 4128529 reverse metJ(4128078,4128395) metJ(4128078,4128395) 4128078-4128529 4128395-4128529 ATTATCACGCCGACAGGTGCATTACACGATGTCACGGTAACGCCTGTACGGTAAACTATGCGGGTTTACGGTCAGTACCCACATCAACTGTGTGGTCTGGTCTCAATTTATTGACGAAGAGGATTAAGTATCTCA metJ metJ metJp1 4128558 reverse metJ(4128078,4128395) metJ(4128078,4128395) 4128078-4128558 4128395-4128558 AATCCCAAATAGCCGTTAAAATTATATGCATTATCACGCCGACAGGTGCATTACACGATGTCACGGTAACGCCTGTACGGTAAACTATGCGGGTTTACGGTCAGTACCCACATCAACTGTGTGGTCTGGTCTCAATTTATTGACGAAGAGGATTAAGTATCTCA metBL metBL metBp 4128636 forward metB(4128672,4129832) metL(4129835,4132267) rho-independent(4132402,4132456) 4128636-4132456 4128636-4128672 GACATTTCACCGACAAAGCCCAGGGAACTTCATCACA 4132267-4132456 ATTTCAGAAATTTAATAATGCCCGGTACTCATGTTTTCGGGTTTATGGTTTCTAATGAAATATATTGAATTATCATAGGATTAGGCCGGATTAAGCGTTTACGACGAATCCGGCAAGAAGCAATAAGTACATGGTTAGTTTATATTTGCAGTCCGGTTTGCTTTGCATACCGGATTTTCTTTTTCTTACC metF metF metFp 4132546 forward metF(4132616,4133506) metF(4132616,4133506) 4132546-4133506 4132546-4132616 CATCTGGACGTCTAAACGGATAGATGTGCACAACACAACATATAACTACAAGCGATTGATGAGGTAAGGTA katG katG katGp 4133812 forward katG(4133835,4136015) katG(4133835,4136015) 4133812-4136015 4133812-4133835 ACACTGTAGAGGGGAGCACATTGA ppc ppc ppcp 4153190 reverse ppc(4150447,4153098) ppc(4150447,4153098) 4150447-4153190 4153098-4153190 GACGACGAAAAGCAAAGCCCGAGCATATTCGCGCCAATGCGACGTGAAGGATACAGGGCTATCAAACGATAAGATGGGGTGTCTGGGGTAATA argCBH argCBH argCp 4154885 forward argC(4155001,4156005) argH(4156850,4158223) 4154885-4158223 4154885-4155001 ATGCAGTATTTATGAATAAAAATACACTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGAAGGTGAATAGCCCCGA argE argE argEp1 4154897 reverse argE(4153696,4154847) argE(4153696,4154847) 4153696-4154897 4154847-4154897 ATAAATACTGCATGAATATTGATACTATCATGACCAGAGGTGTGTCAACAA argE argE argEp2 4155078 reverse argE(4153696,4154847) argE(4153696,4154847) 4153696-4155078 4154847-4155078 ATGCGGATGGCGATTTACATAGGTCACTAGCTCTGCGCCAGCGTAGCCGCTGGCACCCACAATCAGCGTATTCAACATCGGGGCTATTCACCTTCTTATGTCTGGTTGCCAGGTTAAACGTAAAACATTCACCTTACGGCTGGTGGGTTTTATTACGCTCAACGTTAGTGTATTTTTATTCATAAATACTGCATGAATATTGATACTATCATGACCAGAGGTGTGTCAACAA oxyS oxyS oxySp 4158394 reverse oxyS(4158278,4158394) oxyS(4158278,4158394) 4158278-4158394 4158394-4158394 G oxyR oxyR oxyRp 4158457 forward oxyR(4158490,4159407) oxyR(4158490,4159407) 4158457-4159407 4158457-4158490 GCCATGAACTATCGTGGCGATGGAGGATGGATAA oxyR oxyR oxyRp2 4158457 forward oxyR(4158490,4159407) oxyR(4158490,4159407) 4158457-4159407 4158457-4158490 GCCATGAACTATCGTGGCGATGGAGGATGGATAA sthA sthA sthAp 4160802 reverse sthA(4159390,4160790) sthA(4159390,4160790) 4159390-4160802 4160790-4160802 GTAAGCCCTACCA trmA trmA trmAp 4163295 reverse trmA(4162170,4163270) trmA(4162170,4163270) rho-independent(4162137,4162164) 4162137-4163295 4163270-4163295 GTACTTTAATTTTTCAGGATACATCA 4162137-4162170 AAACCCATGCCGGATGCGCCAGCATCCGGCATAA btuB-murI btuB-murI btuBp 4163399 forward btuB(4163639,4165483) murI(4165428,4166285) 4163399-4166285 4163399-4163639 GCCGGTCCTGTGAGTTAATAGGGAATCCAGTGCGAATCTGGAGCTGACGCGCAGCGGTAAGGAAAGGTGCGATGATTGCGTTATGCGGACACTGCCATTCGGTGGGAAGTCATCATCTCTTAGTATCTTAGATACCCCTCCAAGCCCGAAGACCTGCCGGCCAACGTCGCATCTGGTTCTCATCATCGCGTAATATTGATGAAACCTGCGGCATCCTTCTTCTATTGTGGATGCTTTACAA rrsB-gltT-rrlB-rrfB rrsB-gltT-rrlB-rrfB rrsBp1 4166367 forward rrsB(4166659,4168200) rrfB(4171637,4171756) rho-independent(4171760,4171803) 4166367-4171803 4166367-4166659 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA 4171756-4171803 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAT rrsB-gltT-rrlB-rrfB rrsB-gltT-rrlB-rrfB rrsBp1 4166367 forward rrsB(4166659,4168200) rrfB(4171637,4171756) rho-independent(4171935,4171962) 4166367-4171962 4166367-4166659 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA 4171756-4171962 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTT rrsB-gltT-rrlB-rrfB rrsB-gltT-rrlB-rrfB rrsBp 4166367 forward rrsB(4166659,4168200) rrfB(4171637,4171756) rho-independent(4171760,4171803) 4166367-4171803 4166367-4166659 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA 4171756-4171803 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAT rrsB-gltT-rrlB-rrfB rrsB-gltT-rrlB-rrfB rrsBp 4166367 forward rrsB(4166659,4168200) rrfB(4171637,4171756) rho-independent(4171935,4171962) 4166367-4171962 4166367-4166659 ACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAGGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA 4171756-4171962 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTT rrsB-gltT-rrlB-rrfB rrsB-gltT-rrlB-rrfB rrsBp2 4166484 forward rrsB(4166659,4168200) rrfB(4171637,4171756) rho-independent(4171760,4171803) 4166484-4171803 4166484-4166659 CCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA 4171756-4171803 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAT rrsB-gltT-rrlB-rrfB rrsB-gltT-rrlB-rrfB rrsBp2 4166484 forward rrsB(4166659,4168200) rrfB(4171637,4171756) rho-independent(4171935,4171962) 4166484-4171962 4166484-4166659 CCCGCGCCGCTGAGAAAAAGCGAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTA 4171756-4171962 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTT coaA coaA coaAp 4175107 reverse coaA(4174076,4175026) coaA(4174076,4175026) 4174076-4175107 4175026-4175107 ATTAACCCATTCAACAGAACTGTGACGCGCCATGGCAAATATCGCTTTGCCGATAGAGCTATGACCGCCAGAAACATGCTTA thrU-tyrU-glyT-thrT-tufB thrU-tyrU-glyT-thrT-tufB thrUp 4175381 forward thrU(4175388,4175463) tufB(4175944,4177128) rho-independent(4177158,4177185) 4175381-4177185 4175381-4175388 ACTTGATG 4177128-4177185 ATTGCCGATAACATTTGACGCAATGCGCACTAAAAGGGCATCATTTGATGCCCTTTTT secE-nusG secE-nusG secEp 4177177 forward secE(4177358,4177741) nusG(4177743,4178288) rho-independent(4178328,4178356) 4177177-4178356 4177177-4177358 GCCCTTTTTGCACGCTTTCGTACCAGAACCTGGCTCATCAGTGATTTTCTTTGTCATAATCATTGCTGAGACAGGCTCTGTTGAGGGCGTATAATCCGAAAAGCTAATACGCGTTTCGATTTGGTTTGCCTCGCGATCGCGGGGTGAAAATGTTTGTAGAAAACTTCTGACAGGTTGGTTTA 4178288-4178356 ACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCC rplKAJL-rpoBC rplKAJL-rpoBC rplKp 4178354 forward rplK(4178447,4178875) rpoC(4185350,4189573) rho-independent(4189599,4189613) 4178354-4189613 4178354-4178447 GCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGCGTTATTACCCAACTTGAGGAATTTATAA 4189573-4189613 ATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGG rplKAJL-rpoBC rplJL-rpoBC rplJp 4179623 forward rplJ(4179996,4180493) rpoC(4185350,4189573) rho-independent(4189599,4189613) 4179623-4189613 4179623-4179996 CCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTCCGTTTGGAGGAGTGAAGTGAGTTCCAGAGATTTTCTCTGGCAAACATCCAGGAGCAAAGCTAA 4189573-4189613 ATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGG rplKAJL-rpoBC rpoBC rpoBp 4181063 forward rpoB(4181245,4185273) rpoC(4185350,4189573) rho-independent(4189599,4189613) 4181063-4189613 4181063-4181245 ATCGACGACTTAATATACTGCGACAGGACGTCCGTTCTGTGTAAATCGCAATGAAATGGTTTAAGCGTGATAGCAACAGGCATTGCGGAAAGTGTTCCATTTTCCGGTCAACAAAATAGTGTTGCACAAACTGTCCGCTCAATGGACAGATGGGTCGACTTGTCAGCGAGCTGAGGAACCCTA 4189573-4189613 ATCGTTAATCCGCAAATAACGTAAAAACCCGCTTCGGCGGG yjaZ yjaZ yjaZp 4189753 forward yjaZ(4189786,4190325) yjaZ(4189786,4190325) rho-independent(4190328,4190349) 4189753-4190349 4189753-4189786 ACTATTCCTGTGTAACTTTCTTAAGGAACGAGAA 4190325-4190349 ACAAAACCCACCTTAAGGTGGGTTT sroH sroH sroHp 4190487 reverse sroH(4190327,4190487) sroH(4190327,4190487) 4190327-4190487 4190487-4190487 G thiCEFSGH thiCEFSGH thiCp 4196281 reverse thiC(4194204,4196099) thiH(4190735,4191868) 4190735-4196281 4196099-4196281 TAATTTCTTGTCGGAGTGCCTTAACTGGCTGAGACCGTTTATTCGGGATCCGCGGAACCTGATCAGGCTAATACCTGCGAAGGGAACAAGAGTTAATCTGCTATCGCATCGCCCCTGCGGCGATCGTCTCTTGCTTCATCCGTCGTCTGACAAGCCACGTCCTTAACTTTTTGGAATGAGCTA rsd rsd rsdp2 4196859 reverse rsd(4196332,4196808) rsd(4196332,4196808) 4196332-4196859 4196808-4196859 TTTTACATTTCTCACTGAGCAGTTTTTGAATACAAACTTGCGGAGTCAATCA rsd rsd rsdp1 4196954 reverse rsd(4196332,4196808) rsd(4196332,4196808) 4196332-4196954 4196808-4196954 CATGGCTGACGACCCACCAGCCGTGATCTAATTTTTCAATTATACGATCCATAGCTCTTGCACTACCTTTGCATCACTGGCATGTTTAACATGGTTTTTACATTTCTCACTGAGCAGTTTTTGAATACAAACTTGCGGAGTCAATCA hupA hupA hupAp 4200176 forward hupA(4200281,4200553) hupA(4200281,4200553) rho-independent(4200582,4200601) 4200176-4200601 4200176-4200281 GCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAAACACATTGTAAGGATAACTTA 4200553-4200601 AGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGTGGTTTCACCCCTT zraP zraP zraPp 4201712 reverse zraP(4201263,4201688) zraP(4201263,4201688) 4201263-4201712 4201688-4201712 AAGACAACCACTGGAGGATTAACCA zraSR zraSR zraSp 4201905 forward zraS(4201926,4203323) zraR(4203320,4204645) 4201905-4204645 4201905-4201926 GATGAGCAGGCAAAGAAGAAGA purHD purHD purHp 4207627 reverse purH(4205943,4207532) purD(4204642,4205931) 4204642-4207627 4207532-4207627 GAAAAATAAGGATGCCCCGTTAGGGGCGTTAGCTGAGTTTTTCGCGAAAAATTCAGCTAACGCTCTCTGTAATAGTCAAATCCAGGGGATTTACCA rrsE-gltV-rrlE-rrfE rrsE-gltV-rrlE-rrfE rrsEp1 4207863 forward rrsE(4208147,4209688) rrfE(4213040,4213159) rho-independent(4213155,4213209) 4207863-4213209 4207863-4208147 ATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 4213159-4213209 TCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAAT rrsE-gltV-rrlE-rrfE rrsE-gltV-rrlE-rrfE rrsEp3 4207863 forward rrsE(4208147,4209688) rrfE(4213040,4213159) rho-independent(4213155,4213209) 4207863-4213209 4207863-4208147 ATCGACACGGCGGATGTGAATCACTTCACACAAACAGCCGGTTCGGTTGAAGAGAAAAATCCTGAAATTCAGGGTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 4213159-4213209 TCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAAT rrsE-gltV-rrlE-rrfE rrsE-gltV-rrlE-rrfE rrsEp2 4207971 forward rrsE(4208147,4209688) rrfE(4213040,4213159) rho-independent(4213155,4213209) 4207971-4213209 4207971-4208147 CCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAGACGAAAAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCATCAAACTTTTA 4213159-4213209 TCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAAT metA metA metAp2 4214159 forward metA(4214280,4215209) metA(4214280,4215209) 4214159-4215209 4214159-4214280 AGTCTTTTCCTTGAAACTTTCTCACCTTCAACATGCAGGCTCGACATTGGCAAATTTTCTGGTTATCTTCAGCTATCTGGATGTCTAAACGTATAAGCGTATGTAGTGAGGTAATCAGGTTA metA metA metAp1 4214233 forward metA(4214280,4215209) metA(4214280,4215209) 4214233-4215209 4214233-4214280 ATCTGGATGTCTAAACGTATAAGCGTATGTAGTGAGGTAATCAGGTTA aceBAK aceBAK aceBp 4215402 forward aceB(4215478,4217079) aceK(4218596,4220332) 4215402-4220332 4215402-4215478 GTGCTGAACGAAAAGAGCACAACGATCCTTCGTTCACAGTGGGGAAGTTTTCGGATCCATGACGAGGAGCTGCACGA metH metH metHp2 4223505 forward metH(4223828,4227511) metH(4223828,4227511) 4223505-4227511 4223505-4223828 CATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCACAGATGCGTTTATGCCAGTATGGTTTGTTGAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGTG iclR iclR iclRp 4223652 reverse iclR(4222804,4223628) iclR(4222804,4223628) 4222804-4223652 4223628-4223652 ACGATACAGAAAAAAGAGACTGTCA metH metH metHp1 4223783 forward metH(4223828,4227511) metH(4223828,4227511) 4223783-4227511 4223783-4223828 TGTTGAATTTTTATTAAATCTGGGTTGAGCGTGTCGGGAGCAAGTG yjbB yjbB yjbBp 4227602 forward yjbB(4227731,4229362) yjbB(4227731,4229362) 4227602-4229362 4227602-4227731 AGGCTGGAATAATCTTAGCCGGAAAAACGAATGTCAAAAGGCACAGTAAAGATGCCAGTCAGCGTGTTTCCGGTCCTTTGGTCATTCAATTGCTTCAGGAACATATAACGATAAGGAGAACCTGAACTCG lysC lysC lysCp1 4233539 reverse lysC(4231884,4233233) lysC(4231884,4233233) 4231884-4233539 4233233-4233539 GTACTACCTGCGCTAGCGCAGGCCAGAAGAGGCGCGTTGCCCAAGTAACGGTGTTGGAGGAGCCAGTCCTGTGATAACACCTGAGGGGGTGCATCGCCGAGGTGATTGAACGGCTGGCCACGTTCATCATCGGCTACAGGGGCTGAATCCCCTGGGTTGTCACCAGAAGCGTTCGCAGTCGGGCGTTTCGCAAGTGGTGGAGCACTTCTGGGTGAAAATAGTAGCGAAGTATCGCTCTGCGCCCACCCGTCTTCCGCTCTTCCCTTGTGCCAAGGCTGAAAATGGATCCCCTGACACGAGGTAGTTA lysC lysC lysCp2 4233616 reverse lysC(4231884,4233233) lysC(4231884,4233233) 4231884-4233616 4233233-4233616 CTGACCGCCAGGAGTGGATGAAAAATCCGCATGACCCCATCGTTGACAACCGCCCCGCTCACCCTTTATTTATAAATGTACTACCTGCGCTAGCGCAGGCCAGAAGAGGCGCGTTGCCCAAGTAACGGTGTTGGAGGAGCCAGTCCTGTGATAACACCTGAGGGGGTGCATCGCCGAGGTGATTGAACGGCTGGCCACGTTCATCATCGGCTACAGGGGCTGAATCCCCTGGGTTGTCACCAGAAGCGTTCGCAGTCGGGCGTTTCGCAAGTGGTGGAGCACTTCTGGGTGAAAATAGTAGCGAAGTATCGCTCTGCGCCCACCCGTCTTCCGCTCTTCCCTTGTGCCAAGGCTGAAAATGGATCCCCTGACACGAGGTAGTTA pgi pgi pgip 4233722 forward pgi(4233758,4235407) pgi(4233758,4235407) 4233722-4235407 4233722-4233758 AAAGTCACAATTCTCAAAATCAGAAGAGTATTGCTAA pgi pgi pgip2 4233722 forward pgi(4233758,4235407) pgi(4233758,4235407) 4233722-4235407 4233722-4233758 AAAGTCACAATTCTCAAAATCAGAAGAGTATTGCTAA yjbEFGH yjbE yjbEp1 4235858 forward yjbE(4235906,4236148) yjbE(4235906,4236148) rho-independent(4236159,4236209) 4235858-4236209 4235858-4235906 GAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTTA 4236148-4236209 ATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTGTGGCTAGAAGTATGAAGGGA yjbEFGH yjbEFGH yjbEp1 4235858 forward yjbE(4235906,4236148) yjbH(4237634,4239730) 4235858-4239730 4235858-4235906 GAAATGTTTTTGGGTAAATCTCCATTCATTCAATGAAGGGAAATTGTTA yjbEFGH yjbEFGH yjbEp2 4235872 forward yjbE(4235906,4236148) yjbH(4237634,4239730) 4235872-4239730 4235872-4235906 TAAATCTCCATTCATTCAATGAAGGGAAATTGTTA psiE psiE psiEp 4240300 forward psiE(4240325,4240735) psiE(4240325,4240735) 4240300-4240735 4240300-4240325 TCGCCACTGTGAAGGAGGTACTGCTA xylE xylE xylEp 4242291 reverse xylE(4240779,4242254) xylE(4240779,4242254) rho-independent(4240734,4240777) 4240734-4242291 4242254-4242291 ACTGATAAAAGATCAGAATGGTCTAAGGCAGGTCTGAA 4240734-4240779 ATCTTCCTGTCCAGCACGCCGCGCCATTTCGGCGTGCTGACTTTTT malEFGH malEFGH malEp 4246464 reverse malE(4245229,4246419) malH(4242531,4242633) rho-independent(4242539,4242555) 4242539-4246464 4246419-4246464 GTTTAGGTGTTTTCACGAGCACTTCACCAACAAGGACCATAGATTA malK-lamB-malM malK-lamB-malM malKp 4246736 forward malK(4246784,4247899) malM(4249554,4250474) 4246736-4250474 4246736-4246784 ATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCA ubiCA ubiCA ubiCp 4252443 forward ubiC(4252506,4253003) ubiA(4253016,4253888) 4252443-4253888 4252443-4252506 ACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCA dgkA dgkA dgkAp1 4256457 forward dgkA(4256637,4257005) dgkA(4256637,4257005) 4256457-4257005 4256457-4256637 AGCCGGACATAAACGATGTAAAGCCTCTGGTTAATAATGCAAATGCGCGGCAAGGATAGCAGAAAGTCATGGGAAATTCTGTGGTATCCGCTCATGTTTCGCGCGGCGCTACGCAAACCCGAATCATCGGATTTAACGGTACACTGATATTGACGCTCATAATGTAAAAAGGTTCTTTCAA plsB plsB plsBp2 4256502 reverse plsB(4254043,4256466) plsB(4254043,4256466) 4254043-4256502 4256466-4256502 GCATTTGCATTATTAACCAGAGGCTTTACATCGTTTA plsB plsB plsBp1 4256598 reverse plsB(4254043,4256466) plsB(4254043,4256466) 4254043-4256598 4256466-4256598 GTACCGTTAAATCCGATGATTCGGGTTTGCGTAGCGCCGCGCGAAACATGAGCGGATACCACAGAATTTCCCATGACTTTCTGCTATCCTTGCCGCGCATTTGCATTATTAACCAGAGGCTTTACATCGTTTA dgkA dgkA dgkAp2 4256608 forward dgkA(4256637,4257005) dgkA(4256637,4257005) 4256608-4257005 4256608-4256637 GACGCTCATAATGTAAAAAGGTTCTTTCAA lexA-dinF lexA-dinF lexAp 4257087 forward lexA(4257115,4257723) dinF(4257742,4259121) 4257087-4259121 4257087-4257115 ATAACTGTATATACACCCAGGGGGCGGAA pspGH pspG pspGp 4262816 forward pspG(4262840,4263082) pspH(4263139,4263249) 4262816-4263249 4262816-4262840 AGATTTCATATTTGGGAGAGCATCA dnaB dnaB dnaBp 4264283 forward dnaB(4264314,4265729) dnaB(4264314,4265729) 4264283-4265729 4264283-4264314 CCCATTCTTTATCTCGGTAACTCCATTCACTA qorA qorA qorAp 4264304 reverse qorA(4263248,4264231) qorA(4263248,4264231) 4263248-4264304 4264231-4264304 AGTTACCGAGATAAAGAATGGGTCGAAACTTTATCATATGAAGCAGACCCTGACGATACGTTCTGGAGGACACA alr alr alrp1 4265589 forward alr(4265782,4266861) alr(4265782,4266861) 4265589-4266861 4265589-4265782 GAAAACAGTGATTTAAAAGGCATCGCGGAAATTATTATCGGTAAACAACGTAACGGCCCAATCGGGACGGTACGCCTGACCTTTAACGGTCAATGGTCGCGCTTCGACAACTATGCGGGGCCGCAGTACGACGACGAATAATAATTATTTTATGAATTAGGTAATTAAAGCAAACACTTATCAAGGAACACAAA alr alr alrp2 4265652 forward alr(4265782,4266861) alr(4265782,4266861) 4265652-4266861 4265652-4265782 GGGACGGTACGCCTGACCTTTAACGGTCAATGGTCGCGCTTCGACAACTATGCGGGGCCGCAGTACGACGACGAATAATAATTATTTTATGAATTAGGTAATTAAAGCAAACACTTATCAAGGAACACAAA tyrB tyrB tyrBp 4267082 forward tyrB(4267114,4268307) tyrB(4267114,4268307) rho-independent(4268317,4268340) 4267082-4268340 4267082-4267114 ACCACCTGCCCGTAAACCTGGAGAACCATCGCG 4268307-4268340 ATGCAGGAAAGCAGGCTGGAGCTACCCAGCCTGC yjbQR yjbQR yjbQp 4270214 forward yjbQ(4270238,4270654) yjbR(4270658,4271014) rho-independent(4271007,4271061) 4270214-4271061 4270214-4270238 GAGAGTTTTATCAAGGAGCAGCACA 4271014-4271061 AAAGGAAAAGGCCGCTCAGAAAGCGGCCTTAACGATTACAGCATCGGC uvrA uvrA uvrAp 4273936 reverse uvrA(4271049,4273871) uvrA(4271049,4273871) rho-independent(4271007,4271061) 4271007-4273936 4273871-4273936 ACCGTTTGTGATCGCCGGTAGCACCATGCCACCGGGCAAAAAAGCGTTTAATCCGGGAAAGGTGAA 4271007-4271049 ATCGTTAAGGCCGCTTTCTGAGCGGCCTTTTCCTTTCAGAGTT ssb ssb ssbp3 4274011 forward ssb(4274125,4274661) ssb(4274125,4274661) 4274011-4274661 4274011-4274125 CTGGCCAGGTTTGTTTCCCGGAACCGAGGTCACAACATAGTAAAAGCGCTATTGGTAATGGTACAATCGCGCGTTTACACTTATTCAGAACGATTTTTTTCAGGAGACACGAACA ssb ssb ssbp2 4274080 forward ssb(4274125,4274661) ssb(4274125,4274661) 4274080-4274661 4274080-4274125 CGCGTTTACACTTATTCAGAACGATTTTTTTCAGGAGACACGAACA ssb ssb ssbp1 4274092 forward ssb(4274125,4274661) ssb(4274125,4274661) 4274092-4274661 4274092-4274125 TATTCAGAACGATTTTTTTCAGGAGACACGAACA yjcB yjcB yjcBp 4275164 reverse yjcB(4274760,4275041) yjcB(4274760,4275041) 4274760-4275164 4275041-4275164 TGAAACAAACAGAGTGTTTCATTTTTGTGTTCTGCAAGCCCCGCGATAGCCAGAGTGTACCACGCCTCCCGTGAACAACGCCGCGCTGTCCAGGGCATCGGCTCTTTTCAGAGGAATTGTTTGA pdeC yjcC yjcCp 4275418 forward pdeC(4275471,4277057) pdeC(4275471,4277057) 4275418-4277057 4275418-4275471 CAGGGTTTTCACCTTGCAATGGCCGGGTATAAACAGGCAGGAAATTGATAGCAA soxS soxS soxSp 4277423 reverse soxS(4277060,4277383) soxS(4277060,4277383) 4277060-4277423 4277383-4277423 AGATGAATTAACGAACTGAACACTGAAAAGAGGCAGATTTA soxR soxR soxRp 4277447 forward soxR(4277469,4277933) soxR(4277469,4277933) rho-independent(4277927,4277957) 4277447-4277957 4277447-4277469 TTAACTTGAGGTAAAGCGATTTA 4277933-4277957 AAGCGCCACAAGGGCGCTTTAGTTT ryjA ryjA ryjAp 4278066 reverse ryjA(4277926,4278066) ryjA(4277926,4278066) rho-independent(4277927,4277957) 4277927-4278066 4278066-4278066 A ghxP ghxP ghxPp 4278321 forward ghxP(4278479,4279828) ghxP(4278479,4279828) 4278321-4279828 4278321-4278479 TTTTTTACCACCCGTTTTGTATGCGCGGAGCTAAACGTTTGCTTTTTTGCGACGCAGCAAATTGTCGCAAACCTGGAGCAGGAAGATAACGTTTCGCTGGCAGGGGATTGTCCGCCACGCATCTTGACGAAAATTAAACTCTCAGGGGATGTTTTCTTA acs-yjcH-actP actP actPp 4284935 reverse actP(4283253,4284902) actP(4283253,4284902) 4283253-4284935 4284902-4284935 TAATAATGAAGTCCTGCATGAGGTACAAGCATCA acs-yjcH-actP acs-yjcHG acsp2 4287391 reverse acs(4285413,4287371) actP(4283253,4284902) 4283253-4287391 4287371-4287391 CCTACAAGGAGAACAAAAGCA acs-yjcH-actP acs-yjcHG acsp 4287391 reverse acs(4285413,4287371) actP(4283253,4284902) 4283253-4287391 4287371-4287391 CCTACAAGGAGAACAAAAGCA acs-yjcH-actP acs-yjcHG acsp1 4287595 reverse acs(4285413,4287371) actP(4283253,4284902) 4283253-4287595 4287371-4287595 AGAGTTAGTCAGTATCTTCCTCTTTTTCAACAGCATGCATAACTGCATGTTCCTCAAAGAATTAATCAACTTTTGTTGCTGACCTTCAAAAATTACCCTGCCGTTTATTTGCACAATTCTACTTTTGCGTGATCTGTCGCCCAAATACTAAACAAAACTGCCAATACCCCTACATTTAACGCTTATGCCACATATTATTAACATCCTACAAGGAGAACAAAAGCA nrfABCDEFG nrfABCDEFG nrfAp 4287671 forward nrfA(4287764,4289200) nrfG(4293543,4294139) 4287671-4294139 4287671-4287764 CGAGCAATGTCATGACAGTGTAGGTGCGGTTACTGTCGTGAAAAACAATAAAAACCGCCATTGCAACAATGGCGCAATTCGGATGAAGCCCCTA fdhF fdhF fdhFp 4299407 reverse fdhF(4297219,4299366) fdhF(4297219,4299366) rho-independent(4297178,4297211) 4297178-4299407 4299366-4299407 GAGAGCGCGTATGCGTGATTTGATTAACTGGAGCGAGACCGA 4297178-4297219 ATACCGTCCTTTCTACAGCCTCCTTTCGGAGGCTGTTTTTTT alsRBACE alsRBACE alsRp1 4313132 reverse alsR(4312101,4312991) alsE(4307783,4308478) 4307783-4313132 4312991-4313132 AAATAAAATTTTAAGCCACTCGCCATTGTTCACAATAAAATAAACTTTATAAATTTTATTTTTTTGTGAAGTCGCCAGCATCTTTTCTGTTCTTGCTGTGGTGATATAGTGGCGTCTTCAATTCAAGGACAAGAGAACGTGA alsRBACE alsRBACE alsRp2 4313137 reverse alsR(4312101,4312991) alsE(4307783,4308478) 4307783-4313137 4312991-4313137 AAATGAAATAAAATTTTAAGCCACTCGCCATTGTTCACAATAAAATAAACTTTATAAATTTTATTTTTTTGTGAAGTCGCCAGCATCTTTTCTGTTCTTGCTGTGGTGATATAGTGGCGTCTTCAATTCAAGGACAAGAGAACGTGA rpiB rpiB rpiBp 4313257 forward rpiB(4313350,4313799) rpiB(4313350,4313799) rho-independent(4313801,4313827) 4313257-4313827 4313257-4313350 GGAAGGCGTAATTCATCGATTTTGGGTGTTTTTAATTCATTAACATCACAAATGTTTTTTGATTGTGAAGTTTTGCACGGACGGGGAAGATGAA 4313799-4313827 AGATTCATCCACTACTTGCATGGATGAGT phnCDEFGHIJKLMNOP phnCDEEFGHIJKLMNOP phnCp 4325206 reverse phnC(4324377,4325165) phnP(4314344,4315102) 4314344-4325206 4325165-4325206 AATCCGCCACGATGGAGCCACTTTTTTAGGGAGGCTGCATCA rdcAB rdcAB rdcAp2 4327064 forward rdcA(4327135,4329363) rdcB(4329360,4330238) 4327064-4330238 4327064-4327135 AGCCGAAAACAGAACTCAAAAACAATCTGGCTAAATAAAATAACAAAATTTGCTTTAAGGAAGAATTTTCTA rdcAB rdcAB rdcAp1 4327079 forward rdcA(4327135,4329363) rdcB(4329360,4330238) 4327079-4330238 4327079-4327135 TCAAAAACAATCTGGCTAAATAAAATAACAAAATTTGCTTTAAGGAAGAATTTTCTA proP proP proPp1 4330320 forward proP(4330502,4332004) proP(4330502,4332004) 4330320-4332004 4330320-4330502 GTCATTAACTGCCCAATTCAGGCGTCAACTGGTTTGATTGTACATTCCTTAACCGGAGGGTGTAAGCAAACCCGCTACGCTTGTTACAGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTA proP proP proPp2 4330407 forward proP(4330502,4332004) proP(4330502,4332004) 4330407-4332004 4330407-4330502 AGAGATTGCATCCTGCAATTCCCGCTCCCCTTTTGCGGCCGTCGCGCTGATTTTTCTGGCGTTTGCGGAAATGGGCCAACTCTGCGAGGAAAGCTA adiC adiC adiCp7 4337202 reverse adiC(4335694,4337031) adiC(4335694,4337031) 4335694-4337202 4337031-4337202 ATGTTAGTCAGCACAGAGAACGCACTGTCGCCTGATTTTTAACCTTAACGAAGAGCTATATTAATAACGGCATCAGCGATAACCCGGTCGATAATAATTCAACTATCGAATGCAGGCGTATGATATGACGTAATTTATTGTCACGAAGCTCGCCTTCGCAGGAGTTTAATTA adiY adiY adiYp 4338042 reverse adiY(4337168,4337929) adiY(4337168,4337929) 4337168-4338042 4337929-4338042 AAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCATTTCCCGGTATCGCTTTGCTTTAGCGAGAACTGGTCTTTTATTCGCACTCAGGAGTACATGTA adiA adiA adiAp 4340556 reverse adiA(4338254,4340521) adiA(4338254,4340521) rho-independent(4338210,4338237) 4338210-4340556 4340521-4340556 GCAACGAAGATTCCTTCATAACCGGGTAAGCAATGA 4338210-4338254 ACCACTATTCCGCTGAAGGCGTAATTGTTTAAATAACATTACGCC melR melR melRp 4341650 reverse melR(4340720,4341628) melR(4340720,4341628) 4340720-4341650 4341628-4341650 ATTCCAGGAAAGAGAGCCATCCA melAB melAB melAp 4341887 forward melA(4341911,4343266) melB(4343369,4344790) 4341887-4344790 4341887-4341911 ATTCAAGCAAGCCAGGAGATCTGCA dcuB-fumB fumB fumBp 4347348 reverse fumB(4345680,4347326) fumB(4345680,4347326) rho-independent(4345631,4345650) 4345631-4347348 4347326-4347348 ACAGAGTTACAGGCTGGAAGCTA 4345631-4345680 ACCTCTTCGGCCCAGCGCCTGGCAGCATGCTGCCAGGTGATCCCCCTGGC dcuB-fumB dcuB-fumB dcuBp1 4348764 reverse dcuB(4347404,4348744) fumB(4345680,4347326) rho-independent(4345631,4345650) 4345631-4348764 4348744-4348764 ATTATCGCGAGGGTTCACACA 4345631-4345680 ACCTCTTCGGCCCAGCGCCTGGCAGCATGCTGCCAGGTGATCCCCCTGGC dcuB-fumB dcuB-fumB dcuBp2 4349091 reverse dcuB(4347404,4348744) fumB(4345680,4347326) rho-independent(4345631,4345650) 4345631-4349091 4348744-4349091 ACAAATGGGTAGATCAGATTAATCTATAAACCTAATGACATCTGCCCTGAGAACAAAAAATAGACCGATAAATATCAATAAGATAACAGCAAACAAAACATTAACATCTGCGCAGTACAAACTATAAACCCATCGCCAGAGAGTCTTTCTCTCTGAAAAAGCCGCTTATCACAGTGCATAAATTTGCCGCTGCTTTAATCAGCCAATATTCACTGTGAGGTATTTGCTAAAGCCGGTAACGACCAAACGGATATTTAGTCAGGCTCTGAAAACAGTTCATACAAAACAGAACGTGACTGTGATCTATTCAGCAAAAATTTAAATAGGATTATCGCGAGGGTTCACACA 4345631-4345680 ACCTCTTCGGCCCAGCGCCTGGCAGCATGCTGCCAGGTGATCCCCCTGGC dcuSR dcuR dcuRp 4350565 reverse dcuR(4349315,4350034) dcuR(4349315,4350034) 4349315-4350565 4350034-4350565 TTATAAGCAGTTGGAAGATTACATTCTCAAAACAGCCAATAACTATCAGGAAGAGATTGGCTCTCTGCTGGGTAAGATCAAATCTCCGGTTATCGCTGGTTTTTTAATCAGCAAGATTAACCGCGCGACCGATTTAGGCCATACGCTGATTTTAAACAGTGAAAGCCAGCTGCCAGACAGCGGCAGTGAGGACCAGGTCGCGACGCTGATTACCACGTTGGGAAATCTGATAGAAAACGCGCTGGAGGCATTAGGGCCGGAACCCGGAGGCGAAATTAGCGTAACATTGCACTACCGTCACGGCTGGCTGCACTGTGAAGTTAATGATGATGGACCGGGGATCGCACCCGATAAAATCGATCACATTTTTGACAAAGGTGTCTCGACAAAAGGAAGCGAGCGAGGCGTCGGTTTAGCACTTGTCAAACAACAGGTAGAAAATCTCGGCGGCAGCATCGCCGTGGAATCGGAACCCGGGATTTTCACACAATTTTTTGTCCAGATACCCTGGGACGGGGAGAGGTCGAACAGA dcuSR dcuSR dcuSp 4351685 reverse dcuS(4350031,4351662) dcuR(4349315,4350034) 4349315-4351685 4351662-4351685 AAATTTGTCACACAAGGAAGCTGA ghoST ghoST ghoSp 4352549 forward ghoS(4352584,4352880) ghoT(4352908,4353081) 4352549-4353081 4352549-4352584 TCCCCAGAGCGTTTAATATTGATAGGAGTCATATTA lysU lysU lysUp2 4354797 reverse lysU(4353200,4354717) lysU(4353200,4354717) 4353200-4354797 4354717-4354797 ATAGTCGAGGCAGATAATACAGTGTACCGATCTGTCTCTTTATCTACGCTAAATTGAAAGCTGGATTTAGAGGAACCAAAA lysU lysU lysUp1 4354805 reverse lysU(4353200,4354717) lysU(4353200,4354717) 4353200-4354805 4354717-4354805 AGTTACTAATAGTCGAGGCAGATAATACAGTGTACCGATCTGTCTCTTTATCTACGCTAAATTGAAAGCTGGATTTAGAGGAACCAAAA cadBA cadBA cadBp 4360106 reverse cadB(4358697,4360031) cadA(4356470,4358617) 4356470-4360106 4360031-4360106 AGTTTGGTCTGGTCAGGAAATAGTTATACATCATGACCCGGACTCCAAATTCAAAAATGAAATTAGGAGAAGAGCA cadC cadC cadCp 4361963 reverse cadC(4360396,4361934) cadC(4360396,4361934) 4360396-4361963 4361934-4361963 ATCATTCCCTTTTCGAATGAGTTTCTATTA pheU pheU pheUp 4362627 reverse pheU(4362551,4362626) pheU(4362551,4362626) rho-independent(4362509,4362548) 4362509-4362627 4362626-4362627 TG 4362509-4362551 AAATTCATATAAACGGACCTCCACGGAGGTCCGTTTTTCGTTT dsbD-yjdC yjdC yjdCp 4363330 reverse yjdC(4362733,4363308) yjdC(4362733,4363308) 4362733-4363330 4363308-4363330 GGGAAAGACGGAGGAAAATAGCG cutA cutA cutAp 4365392 reverse cutA(4365018,4365356) cutA(4365018,4365356) 4365018-4365392 4365356-4365392 CTCTCTTGCGGTTCCATCTGTTCTTGCGAGGTGTTTA aspA-dcuA dcuA dcuAp1 4366843 reverse dcuA(4365472,4366773) dcuA(4365472,4366773) 4365472-4366843 4366773-4366843 TTTTTCTTGTGAGCAGTAACTTAAAAATAACAATCTAATATCAACTTGTTAAAAAACAAGGAAGGCTAATA aspX aspXS aspXp2 4366951 reverse aspX(4366839,4366951) aspX(4366839,4366951) 4366839-4366951 4366951-4366951 A aspA-dcuA aspA-dcuA aspAp 4368432 reverse aspA(4366891,4368327) dcuA(4365472,4366773) 4365472-4368432 4368327-4368432 TATTCGGTCGATGCAGGGGATAATCGTCGGTCGAAAAACATTCGAAACCACATATATTCTGTGTGTTTAAAGCAAATCATTGGCAGCTTGAAAAAGAAGGTTCACA aspA-dcuA aspA aspAp 4368432 reverse aspA(4366891,4368327) aspA(4366891,4368327) rho-independent(4366844,4366864) 4366844-4368432 4368327-4368432 TATTCGGTCGATGCAGGGGATAATCGTCGGTCGAAAAACATTCGAAACCACATATATTCTGTGTGTTTAAAGCAAATCATTGGCAGCTTGAAAAAGAAGGTTCACA 4366844-4366891 ATCGTACAGGGTAGTACAAATAAAAAAGGCACGTCAGATGACGTGCCT fxsA fxsA fxsAp 4368603 forward fxsA(4368664,4369140) fxsA(4368664,4369140) 4368603-4369140 4368603-4368664 ACGCGATTCGCAACCCATTCAGGTAGCCGGGGTTAACCGGCTGCTATTACAGGAGAAACCTT groSL groSL groSp 4370616 forward groS(4370688,4370981) groL(4371025,4372671) 4370616-4372671 4370616-4370688 ACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAA groSL groSL groSp2 4370616 forward groS(4370688,4370981) groL(4371025,4372671) 4370616-4372671 4370616-4370688 ACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAA groSL groL groLp1 4370783 forward groL(4371025,4372671) groL(4371025,4372671) 4370783-4372671 4370783-4371025 GGCTAAATCCACCCGCGGCGAAGTGCTGGCTGTCGGCAATGGCCGTATCCTTGAAAATGGCGAAGTGAAGCCGCTGGATGTGAAAGTTGGCGACATCGTTATTTTCAACGATGGCTACGGTGTGAAATCTGAGAAGATCGACAATGAAGAAGTGTTGATCATGTCCGAAAGCGACATTCTGGCAATTGTTGAAGCGTAATCCGCGCACGACACTGAACATACGAATTTAAGGAATAAAGATAA groSL groL groLp2 4370873 forward groL(4371025,4372671) groL(4371025,4372671) 4370873-4372671 4370873-4371025 CGACATCGTTATTTTCAACGATGGCTACGGTGTGAAATCTGAGAAGATCGACAATGAAGAAGTGTTGATCATGTCCGAAAGCGACATTCTGGCAATTGTTGAAGCGTAATCCGCGCACGACACTGAACATACGAATTTAAGGAATAAAGATAA groSL groL groLp3 4370976 forward groL(4371025,4372671) groL(4371025,4372671) 4370976-4372671 4370976-4371025 GCGTAATCCGCGCACGACACTGAACATACGAATTTAAGGAATAAAGATAA yjeI yjeI yjeIp 4372761 forward yjeI(4372809,4373162) yjeI(4372809,4373162) 4372761-4373162 4372761-4372809 ACACGGACGACGCGAGTGGCGTCCAGCTCATTGATTATGGGGAATAACA efp efp efpp 4375567 forward efp(4375699,4376265) efp(4375699,4376265) 4375567-4376265 4375567-4375699 GCAGAAGTTCATCAGGATCGGTCACAACATCGGCAAGTTGCGTTAACCAATCTTCTCTGGATGGGGTATTTAGGGTTACAATATGCGCCATTTTGTGGCTTAGCTACCAATTAACAAATTTCAGAGGGCCTTA ecnAB ecnB ecnBp 4376509 forward ecnB(4376553,4376699) ecnB(4376553,4376699) rho-independent(4376705,4376731) 4376509-4376731 4376509-4376553 TGCTATAGGCAAACATAAATAACATTACCTAAAAGGAAGACGTTA 4376699-4376731 AGCAATAACGGTACGACAGCTGTGTCGTGCCGT gdx sugE sugEp 4376794 forward gdx(4376875,4377192) gdx(4376875,4377192) 4376794-4377192 4376794-4376875 TCCGTTCAACCATCAGCTTTGCAGGACGACCTGCAAACGCCTCTTTTCACCGGGGACGGCCCCAATTCTCCGGAGCCTGATA blc blc blcp 4377745 reverse blc(4377189,4377722) blc(4377189,4377722) 4377189-4377745 4377722-4377745 AAAAAACCAGTAAGGAAACATTTA ampC ampC ampCp 4379003 reverse ampC(4377811,4378944) ampC(4377811,4378944) rho-independent(4377783,4377800) 4377783-4379003 4378944-4379003 ATCGCCAATGTAAATCCGGCCCGCCTATGGCGGGCCGTTTTGTATGGAAACCAGACCCTA 4377783-4377811 AAATTCCATCGGGTCCGAATTTTCGGACC frdABCD frdABCD frdAp 4382412 reverse frdA(4380510,4382318) frdD(4379007,4379366) rho-independent(4378966,4378987) 4378966-4382412 4382318-4382412 AAAGGAGCAGTGGAATAGCGTTCGCAGACCGTAACTTTCAGGTACTTACCCTGAAGTACGTGGCTGTGGGATAAAAACAATCTGGAGGAATGTCG 4378966-4379007 ACGCATCGCCAATGTAAATCCGGCCCGCCTATGGCGGGCCGT frdABCD frdABCD frdAp2 4382412 reverse frdA(4380510,4382318) frdD(4379007,4379366) rho-independent(4378966,4378987) 4378966-4382412 4382318-4382412 AAAGGAGCAGTGGAATAGCGTTCGCAGACCGTAACTTTCAGGTACTTACCCTGAAGTACGTGGCTGTGGGATAAAAACAATCTGGAGGAATGTCG 4378966-4379007 ACGCATCGCCAATGTAAATCCGGCCCGCCTATGGCGGGCCGT epmA epmA epmAp 4382618 forward epmA(4382643,4383620) epmA(4382643,4383620) 4382618-4383620 4382618-4382643 CTTGTCAAAAACTGGAGATTTAACTA psd-mscM psd-mscM psdp 4390638 reverse psd(4389392,4390360) mscM(4386047,4389370) 4386047-4390638 4390360-4390638 ATGACTATTTAGGTCTGTGTAAATATCGCGATTGCAAACACGATACCGATCCGGGCTGCGCTATCCGGGAAGCGGTTGAGGAAGGGAAAATCGCGGAAACCCGTTTCGAAAACTATCACCGTATTCTGGAAAGCATGGCGCAGGTAAAAACGCGTAAAAACTTTTCTGATACGGATGACTGACAATTAAGCTAACCGTCGTTAGAATCGTCCCCTTTTTTTCAGGATCCGGCATGTAGGCCGGATCAGGAACGACAAAACAATGGCCTGGAGGCTACCT glyVXY glyVXY glyVp 4392313 forward glyV(4392360,4392435) glyY(4392583,4392658) 4392313-4392658 4392313-4392360 TAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACG yjeV yjeV yjeVp 4392736 forward yjeV(4392892,4392945) yjeV(4392892,4392945) 4392736-4392945 4392736-4392892 AAACAGAGTTATCCACAGCCTCAGGCTGTAATCTTAATTTCAAAGAAACTTCGCACGGTGAATAGTATTTTTTTAACCTATTGATAGATAAGTTAAAAATTAAGATTCCGTTTTGTCGAGTCGATCACTTGACGATTTTATTCGTCTTGAATTGCAA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC yjeFE-amiB-mutL-miaA-hfq-hflXKC yjeFp1 4393677 forward nnr(4394066,4395613) hflC(4403300,4404304) 4393677-4404304 4393677-4394066 AAACACAATGTTGCTGAATCATCTCGCCCAGCTTTTTGAGTCGGTTGCGCAGAAGTTTGTGATAGTCACGGCCCAGCGCATAACGGCTAACATAGCCGAGTTTGGGGTTTTTCAGCGTGCTGGCAAATGCGGCGTTAGCAGGAAGGTAATTCATCCGCACGCTGATCACGCGCAGCGTACCGGGCAATAACTCATGAGGGCGAGCGCGCAGCATACCGTGACGTGCCATCCAGTCCATTTCGCCGTGGTATTGTTTGTCCAGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGGGCTCTGACA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC yjeFE-amiB-mutL-miaA-hfq-hflXKC yjeFp2 4393937 forward nnr(4394066,4395613) hflC(4403300,4404304) 4393937-4404304 4393937-4394066 AGCCATGCTTGCAGTTTGGGCTCGGACTCGCTGAGATCGGTATCGGTAATACCTACCTGCTGAAAGCCCAGTTCCAGCCCCCACTGTTTAATTTTTTGCGCTAACTGATTGAGATCGAGGGGCTCTGACA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC yjeFE-amiB-mutL-miaA-hfq-hflXKC yjeFp3 4394035 forward nnr(4394066,4395613) hflC(4403300,4404304) 4394035-4404304 4394035-4394066 CGCTAACTGATTGAGATCGAGGGGCTCTGACA queG queG queGp 4394092 reverse queG(4392928,4394067) queG(4392928,4394067) 4392928-4394092 4394067-4394092 GTTTTTCTTCATTGTATGGTCCGTCA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC mutL-miaA-hfq-hflXKC mutLp2 4397046 forward mutL(4397412,4399259) hflC(4403300,4404304) 4397046-4404304 4397046-4397412 GCGGTGCTGGATTTACAGTTCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGTCGACCAGAACACGCCAGCCTTGGCGTTCTGCGCTCGCCGGATATCCCATCAGTACTGGTCGAAACCGGTTTTATCAGCAACAACAGCGAAGAACGTTTGCTGGCGAGCGACGATTACCAACAACAGCTGGCAGAAGCCATTTACAAAGGCCTGCGCAATTACTTCCTTGCGCATCCGATGCAATCTGCGCCGCAGGGTGCAACGGCACAAACTGCCAGTACGGTGACGACGCCAGATCGCACGCTGCCAAACTAAGGACGATTGA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC mutL-miaA-hfq-hflXKC mutLp1 4397100 forward mutL(4397412,4399259) hflC(4403300,4404304) 4397100-4404304 4397100-4397412 ACCAGTATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGTCGACCAGAACACGCCAGCCTTGGCGTTCTGCGCTCGCCGGATATCCCATCAGTACTGGTCGAAACCGGTTTTATCAGCAACAACAGCGAAGAACGTTTGCTGGCGAGCGACGATTACCAACAACAGCTGGCAGAAGCCATTTACAAAGGCCTGCGCAATTACTTCCTTGCGCATCCGATGCAATCTGCGCCGCAGGGTGCAACGGCACAAACTGCCAGTACGGTGACGACGCCAGATCGCACGCTGCCAAACTAAGGACGATTGA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC miaA-hfq-hflXKC miaAp2 4398982 forward miaA(4399252,4400202) hflC(4403300,4404304) 4398982-4404304 4398982-4399252 GGGCAGTGCCTTTACCCTTACGCCAACAAAATTTACAAATCTTGATTCCTGAACTGATAGGCTACCTGGCGAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACATCCGGCGATAAAAGCCCTGAAAGA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC miaA-hfq-hflXKC miaAp1 4399052 forward miaA(4399252,4400202) hflC(4403300,4404304) 4399052-4404304 4399052-4399252 GAAGCAGTCCGTATTCGAACCTGGCAATATTGCGCAGTGGATTGCACGAAATCTGATGAGCGAACATGCGCAGTGGTCAATGGCACAGGCCATAACCCTGCTGGCGGACGTGGAACGGTTATGTCCGCAACTTGTGAAAACGCCGCCGGGTGGTCTGTTACAATCTGTTGATTTACATCCGGCGATAAAAGCCCTGAAAGA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC hfq-hflXKC hfqp2 4399801 forward hfq(4400288,4400596) hflC(4403300,4404304) 4399801-4404304 4399801-4400288 GAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAGTTCGCCATCGCCCCGGCGAGCCGTGAACTGCTCCATCAACGCATTGAGCAGCGTTTTCATCAGATGTTGGCTTCAGGTTTTGAAGCAGAAGTCCGGGCGCTTTTTGCCCGAGGAGATTTGCATACGGACTTGCCTTCCATTCGTTGCGTGGGTTATCGCCAGATGTGGTCTTACCTTGAAGGCGAAATCTCATACGATGAAATGGTTTATCGAGGTGTTTGCGCCACGAGACAGTTGGCGAAGCGGCAGATAACCTGGCTGCGTGGTTGGGAAGGGGTTCACTGGCTTGACAGTGAAAAACCAGAACAGGCGCGTGACGAAGTATTACAGGTTGTTGGTGCTATCGCAGGCTGAATGTGTACAATTGAGACGTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC hfq-hflXKC hfqp3 4400220 forward hfq(4400288,4400596) hflC(4403300,4404304) 4400220-4404304 4400220-4400288 GTATCGTGCGCAATTTTTTCAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA purA purA purAp 4404664 forward purA(4404687,4405985) purA(4404687,4405985) 4404664-4405985 4404664-4404687 TAAGCAAACGGTGATTTTGAAAAA nsrR-rnr-rlmB-yjfIJ nsrR-rnr-rlmB-yjfI nsrRp 4406044 forward nsrR(4406190,4406615) yjfI(4410133,4410534) 4406044-4410534 4406044-4406190 GTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTTTCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTCCCTTTTGAGGTTGATG aidB aidB aidBp1 4414247 forward aidB(4414275,4415900) aidB(4414275,4415900) 4414247-4415900 4414247-4414275 GTGACTGCCATTGATGGAGGGAGACACAG aidB aidB aidBp2 4414247 forward aidB(4414275,4415900) aidB(4414275,4415900) 4414247-4415900 4414247-4414275 GTGACTGCCATTGATGGAGGGAGACACAG bsmA bsmA bsmAp 4416869 reverse bsmA(4416441,4416770) bsmA(4416441,4416770) 4416441-4416869 4416770-4416869 ATGTGGGTTACGCTTTCGTCACGTTTTCATTCGAAAATCGCGTACCAGGTAACAATTCGGGAACATTCCCCCAAAGTTAAATTAATAAGGCACTACACTA ulaG ulaG ulaGp 4419675 reverse ulaG(4418561,4419625) ulaG(4418561,4419625) 4418561-4419675 4419625-4419675 AAACCAATCACATATTGATTCGAATTGAACTATCATGAAGGTAAATGGCGA ulaABCDEF ulaABCDEF ulaAp 4419927 forward ulaA(4419980,4421377) ulaF(4423700,4424386) 4419927-4424386 4419927-4419980 ACAACATTCCGGGTGTGTGGAATACCCGGTTACCTCTTCTTCAGGAGATCGTTA rpsF-priB-rpsR-rplI rpsF-priB-rpsR-rplI rpsFp 4425025 forward rpsF(4425118,4425513) rplI(4426108,4426557) 4425025-4426557 4425025-4425118 GTCATTTTTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAATAATCCGTAAGGAGCAATTCGA ytfB ytfB ytfBp 4428819 reverse ytfB(4428079,4428717) ytfB(4428079,4428717) 4428079-4428819 4428717-4428819 ATCCCGTATGAATATAATAAAGGCGGGTTTACCACGGACATCATAGCGTTAGCTTATTCATAGGCTATGATTGAGGAACAAGACGCGGAGCAGGAGGAAACCA cycA cycA cycAp 4429780 forward cycA(4429864,4431276) cycA(4429864,4431276) 4429780-4431276 4429780-4429864 GTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAGACAGGTACAGGAAGAAAAAAACA ytfE ytfE ytfEp 4432009 reverse ytfE(4431321,4431983) ytfE(4431321,4431983) 4431321-4432009 4431983-4432009 ATCTTATTAAGAATGAGGTATCAGCTA cpdB cpdB cpdBp 4436629 reverse cpdB(4434622,4436565) cpdB(4434622,4436565) 4434622-4436629 4436565-4436629 TCTATAAGTAAGACGTTTATTCTCCCTTTTCTTTCGTATTCCCGATGATAAAAGGATGTCCCTGA ytfJ ytfJ ytfJp 4439286 reverse ytfJ(4438708,4439262) ytfJ(4438708,4439262) 4438708-4439286 4439262-4439286 TGCATATCATAAGAAGGAAACACCA ytfK ytfK ytfKp2 4439413 forward ytfK(4439587,4439793) ytfK(4439587,4439793) 4439413-4439793 4439413-4439587 CGCGCTTCGGTAAAAAGATAATTCTGAATAATTGTAACCTTTAGGTAAAAAAAGTTATACGCGGTGGAAACATTGCCCGGATAGTCTATAGTCACTAAGCATTAAAATTTGCGCCTCATAATAGTTGGGCCGATTGTGGCACCGCACAGGCGTAATACTCAGCAGGAGATAACAA ytfK ytfK ytfKp1 4439511 forward ytfK(4439587,4439793) ytfK(4439587,4439793) 4439511-4439793 4439511-4439587 GCATTAAAATTTGCGCCTCATAATAGTTGGGCCGATTGTGGCACCGCACAGGCGTAATACTCAGCAGGAGATAACAA msrA msrA msrAp 4442261 reverse msrA(4441538,4442176) msrA(4441538,4442176) 4441538-4442261 4442176-4442261 GACCTATTCACGGTGGTTATTGTGTGCAAATACGCCTCTTGTTACAACCTTAACCCCAATGACCGATTTTCGGGAGAGCGACACCA yzfA yzfA yzfAp2 4448294 reverse yzfA(4447976,4448245) yzfA(4447976,4448245) 4447976-4448294 4448245-4448294 ACAGAATGCGAGTCGTCTCGCAAAAAACAACGCCACCCGAAGGTGGCGTA chpSB chpSB chpSp1 4448402 forward chpS(4448447,4448698) chpB(4448692,4449042) 4448402-4449042 4448402-4448447 CTGTAGCACCGTGAGTTATACTTTGTATAACTTAAGGAGGTGCAGA chpSB chpSB chpSp2 4448428 forward chpS(4448447,4448698) chpB(4448692,4449042) 4448428-4449042 4448428-4448447 ATAACTTAAGGAGGTGCAGA ppa ppA ppap 4449686 reverse ppa(4449122,4449652) ppa(4449122,4449652) 4449122-4449686 4449652-4449686 ACTTGTTTGCCACATATTTTTAAAGGAAACAGACA mpl mpl mplp1 4455728 forward mpl(4455785,4457158) mpl(4455785,4457158) 4455728-4457158 4455728-4455785 CTCACTTGCCCGACATATGCGTAAAATGAGCGGCAGATTAAAAAAGGATAGTGACGTA mpl mpl mplp 4455728 forward mpl(4455785,4457158) mpl(4455785,4457158) 4455728-4457158 4455728-4455785 CTCACTTGCCCGACATATGCGTAAAATGAGCGGCAGATTAAAAAAGGATAGTGACGTA mpl mpl mplp2 4455760 forward mpl(4455785,4457158) mpl(4455785,4457158) 4455760-4457158 4455760-4455785 GCAGATTAAAAAAGGATAGTGACGTA tldE tldE tldEp 4457945 forward tldE(4457959,4459311) tldE(4457959,4459311) 4457945-4459311 4457945-4457959 AAACTCTCTACATTA nrdDG nrdDG nrdDp 4462838 reverse nrdD(4460522,4462660) nrdG(4459900,4460364) 4459900-4462838 4462660-4462838 AACCCAATATGTTGTATTAATCGACTATAATTGCTACTACAGCTCCCCACGAAAAAGGTGCGGCGTTGTGGATAAGCGGATGGCGATTGCGGAAAGCACCGGAAAACGAAACGAAAAAACCGGAAAACGCCTTTCCCAATTTCTGTGGATAACCTGTTCTTAAAAATATGGAGCGATCA treBC treBC treBp 4466210 reverse treB(4464759,4466180) treC(4463054,4464709) 4463054-4466210 4466180-4466210 AACCAAAAATGTCATCTGCCATGGGGCTTTA treR treR treRp1 4467271 reverse treR(4466299,4467246) treR(4466299,4467246) rho-independent(4466284,4466298) 4466284-4467271 4467246-4467271 AAACAACACGTTACAGGACAACAGGA 4466284-4466299 ATCGTTTCCTGAACGA treR treR treRp2 4467275 reverse treR(4466299,4467246) treR(4466299,4467246) rho-independent(4466284,4466298) 4466284-4467275 4467246-4467275 AATTAAACAACACGTTACAGGACAACAGGA 4466284-4466299 ATCGTTTCCTGAACGA treR treR treRp3 4467279 reverse treR(4466299,4467246) treR(4466299,4467246) rho-independent(4466284,4466298) 4466284-4467279 4467246-4467279 AAATAATTAAACAACACGTTACAGGACAACAGGA 4466284-4466299 ATCGTTTCCTGAACGA mgtLA mgtA mgtAp2 4467280 forward mgtL(4467431,4467484) mgtA(4467625,4470321) 4467280-4470321 4467280-4467431 GAGCCTAACGTTACCCGTGCATTCAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATA treR treR treRp4 4467347 reverse treR(4466299,4467246) treR(4466299,4467246) rho-independent(4466284,4466298) 4466284-4467347 4467246-4467347 TGCTGACAACTAAACCAACGATAAACCAGACTTTACCCATTGCTGAATGCACGGGTAACGTTAGGCTCAAATAATTAAACAACACGTTACAGGACAACAGGA 4466284-4466299 ATCGTTTCCTGAACGA mgtLA mgtA mgtAp1 4467363 forward mgtL(4467431,4467484) mgtA(4467625,4470321) 4467363-4470321 4467363-4467431 TAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATA ridA ridA ridAp 4470946 reverse ridA(4470527,4470913) ridA(4470527,4470913) 4470527-4470946 4470913-4470946 CAGACTTTTTACCGCTGTAATAAAGGAGAAATCA pyrLBI pyrLBI pyrLp2 4472553 reverse pyrL(4472399,4472533) pyrI(4470986,4471447) rho-independent(4472426,4472445) 4472426-4472553 4472533-4472553 ACAATTTGCCGGGAGGATGTA pyrLBI pyrLBI pyrLp1 4472745 reverse pyrL(4472399,4472533) pyrI(4470986,4471447) rho-independent(4472426,4472445) 4472426-4472745 4472533-4472745 CTGATTGCGTGAAAGTGAAAAAGGAAAAAGCAGGGAATGTCTGCAATTATTGATACCGAAGGACAGTTCCCCTGCAGAATCACATCAAATAAAAATGCATATACCTTGACTTTTAATTCAAATAAACCGTTTGCGCTGACAAAATATTGCATCAAATGCTTGCGCCGCTTCTGACGATGAGTATAATGCCGGACAATTTGCCGGGAGGATGTA bdcA bdcA bdcAp 4474064 reverse bdcA(4473340,4474053) bdcA(4473340,4474053) 4473340-4474064 4474053-4474064 AAGGAGTCCTTA argI argI argIp 4478344 reverse argI(4477307,4478311) argI(4477307,4478311) 4477307-4478344 4478311-4478344 AATTCATTGAGGCGTTAGCCACAGGAGGGATCTA rraB rraB rraBp1 4478384 forward rraB(4478473,4478889) rraB(4478473,4478889) 4478384-4478889 4478384-4478473 TAAAGCATAAATCTTTGTCACAAAGGTGGAGGCAATGTCAGTGGTGTGTGACAATAAGAGTATCGGCAGGACATTAAGAGGAATGAGCCA rraB yjgD rraBp2 4478445 forward rraB(4478473,4478889) rraB(4478473,4478889) 4478445-4478889 4478445-4478473 ATCGGCAGGACATTAAGAGGAATGAGCCA holC-valS valS valSp2 4483919 reverse valS(4480982,4483837) valS(4480982,4483837) rho-independent(4480932,4480957) 4480932-4483919 4483837-4483919 ATTCTCTGAAACAACTGGCGCGCGAACGCTATAAAGCCTACCGCGTGGCTGGTTTCAACCTGAATACGGCAACCTGGAAATAA 4480932-4480982 ATCAAAACACAGTGATGAAAACGAAGGCCGGAGCATGCTCCGGCCTTTTTT holC-valS valS valSp1 4483927 reverse valS(4480982,4483837) valS(4480982,4483837) rho-independent(4480932,4480957) 4480932-4483927 4483837-4483927 TTATGAAGATTCTCTGAAACAACTGGCGCGCGAACGCTATAAAGCCTACCGCGTGGCTGGTTTCAACCTGAATACGGCAACCTGGAAATAA 4480932-4480982 ATCAAAACACAGTGATGAAAACGAAGGCCGGAGCATGCTCCGGCCTTTTTT holC-valS holC-valS holCp 4484273 reverse holC(4483837,4484280) valS(4480982,4483837) 4480982-4484273 4484280-4484273 pepA pepA pepAp3 4486101 reverse pepA(4484440,4485951) pepA(4484440,4485951) 4484440-4486101 4485951-4486101 ATTCACCTCTCAGATTTTGTTCTGACGTGCCAATGCCGTAATAACGTTAAGATTAACACGAAGTCATCGCAACAGCGGACATGAGTTACGAAAGCTTGCAATTCTATCTGTAGCCACCGCCGTTGTCTTTAAGATTCAGGAGCGTAGTGCA pepA pepA pepAp2 4486112 reverse pepA(4484440,4485951) pepA(4484440,4485951) 4484440-4486112 4485951-4486112 ATACTCAACGGATTCACCTCTCAGATTTTGTTCTGACGTGCCAATGCCGTAATAACGTTAAGATTAACACGAAGTCATCGCAACAGCGGACATGAGTTACGAAAGCTTGCAATTCTATCTGTAGCCACCGCCGTTGTCTTTAAGATTCAGGAGCGTAGTGCA pepA pepA pepAp1 4486139 reverse pepA(4484440,4485951) pepA(4484440,4485951) 4484440-4486139 4485951-4486139 GTCGTCGAAATCGTCGCTAAGATAATTATACTCAACGGATTCACCTCTCAGATTTTGTTCTGACGTGCCAATGCCGTAATAACGTTAAGATTAACACGAAGTCATCGCAACAGCGGACATGAGTTACGAAAGCTTGCAATTCTATCTGTAGCCACCGCCGTTGTCTTTAAGATTCAGGAGCGTAGTGCA idnDOTR idnR idnRp 4491182 reverse idnR(4490141,4491139) idnR(4490141,4491139) 4490141-4491182 4491139-4491182 TTTCGGGGGAAGATTGAAGATTCCCCCGACGTTGGGAGAAGTTA idnDOTR idnDOTR idnDp 4494435 reverse idnD(4493375,4494406) idnR(4490141,4491139) 4490141-4494435 4494406-4494435 GAGGTGTCTACCTGACCAGTGAGGAATTTA idnK idnK idnKp 4494597 forward idnK(4494623,4495186) idnK(4494623,4495186) 4494597-4495186 4494597-4494623 AGGTAAGATGATTCAGGAGATTTTAAA leuX leuX leuXp 4496386 forward leuX(4496405,4496489) leuX(4496405,4496489) rho-independent(4496494,4496529) 4496386-4496529 4496386-4496405 TTCCGCATACCTCTTCAGTG 4496489-4496529 AAAAGTATGTAAATAGACCTCAACTGAGGTCTTTTTTTATG nanXY nanXY yjhBp2 4504020 forward nanX(4504058,4505275) nanY(4505287,4506405) 4504020-4506405 4504020-4504058 ACTTTAAGGGCTATATTAGAATAACACAGGAAACAAATA nanXY nanY nanYp2 4505260 forward nanY(4505287,4506405) nanY(4505287,4506405) 4505260-4506405 4505260-4505287 ATCCGTGGCTAAATGATTGGAGGCTTTA nanXY nanY nanYp1 4505266 forward nanY(4505287,4506405) nanY(4505287,4506405) 4505266-4506405 4505266-4505287 GGCTAAATGATTGGAGGCTTTA fecABCDE fecABCDE fecAp 4516727 reverse fecA(4514353,4516677) fecE(4510690,4511457) 4510690-4516727 4516677-4516727 TTCTCGTTCGACTCATAGCTGAACACAACAAAAATGATGATGGGGAAGGTA fecIR fecIR fecIp 4518282 reverse fecI(4517714,4518235) fecR(4516764,4517717) 4516764-4518282 4518235-4518282 CTCATATTAATATGACTACGTGATAATTAACTTTTGATGCACTCCGCA yjhIHG yjhIHG yjhIp 4525888 reverse yjhI(4525015,4525803) yjhG(4522127,4524094) 4522127-4525888 4525803-4525888 CATTACGGTTCAGCATGCTGAACAAAGCATATTTTCCACTATGTAATGCCGATACCATTTATTCCATGAGCAAGGAGGAGCCATTA ryjB ryjB ryjBp 4527977 forward ryjB(4527977,4528066) ryjB(4527977,4528066) 4527977-4528066 4527977-4527977 T nanCMS nanCM nanCp 4539928 reverse nanC(4538785,4539501) nanM(4537659,4538765) 4537659-4539928 4539501-4539928 AAAGGTGCACCAAGATAGTCAATGAGACAGGGCATCTCGCAATCTATGGCAAACATCACTTCAGTTCTTTCTCATCGGGTGATGAAAACGCACTTCAGTCTGAAAGGAATATGAAAATGAGATCAACAGACATTCTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATATAGCTTACGAACATTCAAATCAATTAAACATCAGAAGAGATTTTATACTCAGGTATTTAATCTGGATCTCTGTTTATTTAAATAATGTGAAAAGAGATTTTTCACAGGAGACCTTATACAAAAAAATATAAAATACAGCTACCGGTTGCCAAAGACACTATAAGCCTGGCAAAAAAATATTACACAACATAAATGCTAATTGTTTATGCGGGCTTTGTATTGCTTTCTGTATCCTACAAATGAGTGAAATTTA nanCMS nanCMS nanCp 4539928 reverse nanC(4538785,4539501) nanS(4536614,4537594) 4536614-4539928 4539501-4539928 AAAGGTGCACCAAGATAGTCAATGAGACAGGGCATCTCGCAATCTATGGCAAACATCACTTCAGTTCTTTCTCATCGGGTGATGAAAACGCACTTCAGTCTGAAAGGAATATGAAAATGAGATCAACAGACATTCTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATATAGCTTACGAACATTCAAATCAATTAAACATCAGAAGAGATTTTATACTCAGGTATTTAATCTGGATCTCTGTTTATTTAAATAATGTGAAAAGAGATTTTTCACAGGAGACCTTATACAAAAAAATATAAAATACAGCTACCGGTTGCCAAAGACACTATAAGCCTGGCAAAAAAATATTACACAACATAAATGCTAATTGTTTATGCGGGCTTTGTATTGCTTTCTGTATCCTACAAATGAGTGAAATTTA fimB fimB fimBp2 4540667 forward fimB(4540957,4541559) fimB(4540957,4541559) 4540667-4541559 4540667-4540957 CACATGATATATAGATAAGATTAGTTGCATTAATGATGAGGGTTATTATTAGATTCGTATCCGATTGATAAATATATAAAGGTACATAGCATGCAAGAGCATGGCGTTTGTATGGCAACGTTATTATAATTAACAGTTGCTACTCCATTTAAGTTCACTCAGAAGAACTGGTCCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGA fimB fimB fimBp1 4540809 forward fimB(4540957,4541559) fimB(4540957,4541559) 4540809-4541559 4540809-4540957 CTCCATTTAAGTTCACTCAGAAGAACTGGTCCACTTACGTTAGTTATTAAGCAAACGTTCGCTTTTATAAACATAATCAGGATAAAAATGTTGGATTATTGCTAACCCAGCACAGCTAGTGCGCGTCTGTAATTATAAGGGAAAAACGA fimE fimE fimEp 4541871 forward fimE(4542037,4542633) fimE(4542037,4542633) rho-dependent(4542851,4542902) 4541871-4542902 4541871-4542037 TTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTG 4542633-4542902 ATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATC fimAICDFGH fimAICDFGH fimAp 4542694 forward fimA(4543115,4543663) fimH(4548808,4549710) 4542694-4549710 4542694-4543115 TGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCA gntP gntP gntPp 4551334 reverse gntP(4549953,4551296) gntP(4549953,4551296) rho-independent(4549922,4549942) 4549922-4551334 4551296-4551334 CAAAATAACAACGGTTCAACCAGGTAAGGTAAAACGTTA 4549922-4549953 AAAGGACACCAGAGCCTGCCAATGGCAGGCTC uxuAB uxuAB uxuAp 4551518 forward uxuA(4551636,4552820) uxuB(4552901,4554361) 4551518-4554361 4551518-4551636 GCCATCTCATCCGATGCAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCA uxuR uxuR uxuRp 4554458 forward uxuR(4554576,4555349) uxuR(4554576,4555349) 4554458-4555349 4554458-4554576 GCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGATTAACCGCACCTAACGGACACAACACCA ytiCD-idlP-iraD iraD iraDp1 4556576 forward ytiC(4556574,4556675) iraD(4556993,4557385) 4556576-4557385 4556576-4556574 ytiCD-idlP-iraD iraD iraDp2 4556856 forward idlP(4556913,4556996) iraD(4556993,4557385) 4556856-4557385 4556856-4556913 ACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTA ytiCD-idlP-iraD iraD idlPp 4556856 forward idlP(4556913,4556996) iraD(4556993,4557385) 4556856-4557385 4556856-4556913 ACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAATGAACAAAAGGGAATGGCTA symR symR symRp 4579835 forward symR(4579835,4579911) symR(4579835,4579911) 4579835-4579911 4579835-4579835 A symE symE symEp 4579917 reverse symE(4579499,4579840) symE(4579499,4579840) 4579499-4579917 4579840-4579917 GTATTTAGCGCGGTGCGGATGTGCGCCAACACACCCGCATCGCTAATCACAATCACTATTCCTGGAGAATAGCAGTTA btsT btsT yjiYp 4591367 reverse btsT(4589129,4591279) btsT(4589129,4591279) 4589129-4591367 4591279-4591367 AGGATAGCGGTCAATTTACCTCCTCAAACGCAACGCAAACCTAGAACGGCTTCGGCCAACTATTAATCAATACATGCCAGGTTTTACTA tsr tsr tsrp1 4591412 forward tsr(4591657,4593312) tsr(4591657,4593312) 4591412-4593312 4591412-4591657 AACTGAGTGGTTATTTTAGGGATGTAAGCGGTCAGTTTTGCGGTTGAGCGGCAAAGGCGTCGTTTAAGTGACGATAAATATGTGATTCATATCACATATTTATATTGTGAATAATTTATGTAAATAATGGCTTTTTAAATTCAGAGTGTGAATAAAATTCACTCGGCGTAATCTCCGCGGGATATTCATAAAGTTTTTCCTTTCCAGGCCGAAAATCTTGCATCGGTCCACAGGAAAGAGAAACCA tsr tsr tsrp2 4591633 forward tsr(4591657,4593312) tsr(4591657,4593312) 4591633-4593312 4591633-4591657 ATCGGTCCACAGGAAAGAGAAACCA lgoR lgoR lgoRp4 4595947 reverse lgoR(4594937,4595851) lgoR(4594937,4595851) 4594937-4595947 4595851-4595947 ATGAAAAATGGCAGCGGAACGGAAAATCTTTTTTGTGAAAACACACGCATAAAAATGTTTTAAATCGGGTTTTAATGGACTCACAAGGAGGAAAATA yjjB-dnaTC-yjjA dnaTC-yjjA dnaTp 4601615 reverse dnaT(4600978,4601517) yjjA(4599695,4600189) rho-independent(4599620,4599635) 4599620-4601615 4601517-4601615 CGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGTTACTATAAAAGTTATCTCCCTTCTCGTTCATCGTTCCATATTTGAGAAACAGTA 4599620-4599695 AACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCTCTCTCCTGCCCTTTTCCCTGCTCCTGGACGG yjjB-dnaTC-yjjA dnaTC dnaTp 4601615 reverse dnaT(4600978,4601517) dnaC(4600238,4600975) rho-independent(4600139,4600157) 4600139-4601615 4601517-4601615 CGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGTTACTATAAAAGTTATCTCCCTTCTCGTTCATCGTTCCATATTTGAGAAACAGTA 4600139-4600238 ATCCCCGTTTCTGGCGGTATACTGCGACACAATTCCACCTTGAGTAATGATGATGAAAACTGTTAAACATCTTCTGTGCTGTGCCATTGCCGCCAGCGCA yjjB-dnaTC-yjjA yjjB-dnaTC-yjjA yjjBp 4602177 reverse yjjB(4601624,4602097) yjjA(4599695,4600189) rho-independent(4599620,4599635) 4599620-4602177 4602097-4602177 CGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGA 4599620-4599695 AACCGCGAAACGCCGCGTTTTAGCTGTTACCCGGCTGACGCGGCTCTCTCCTGCCCTTTTCCCTGCTCCTGGACGG yjjB-dnaTC-yjjA yjjB-dnaTC yjjBp 4602177 reverse yjjB(4601624,4602097) dnaC(4600238,4600975) rho-independent(4600139,4600157) 4600139-4602177 4602097-4602177 CGCTGGGCGATCGCCAGTCTGCTGACACTGGCTACCTGCGTCGGCGTAGTGATGGCACTGACGATTTGGGGGCTACGCGGA 4600139-4600238 ATCCCCGTTTCTGGCGGTATACTGCGACACAATTCCACCTTGAGTAATGATGATGAAAACTGTTAAACATCTTCTGTGCTGTGCCATTGCCGCCAGCGCA yjjP yjjP yjjPp 4603034 reverse yjjP(4602088,4602858) yjjP(4602088,4602858) 4602088-4603034 4602858-4603034 GATAGTTTGTTTGCGGCGAGAGATAATTCGCTTTTTATCACCGAGCTTCTCCCGATAACCAGGATTAATCAGCGCAATTTTGATCTTAACCTACCGCAAAACAACCGTGCTTCATGATACAAATGGATTCTCATTATCTGAACAATACGCAGCACGTCTATGACAAAGGGCGAGTTA yjjQ-bglJ yjjQ-bglJ yjjQp 4603319 forward yjjQ(4603477,4604202) bglJ(4604160,4604837) 4603319-4604837 4603319-4603477 ACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTAGACAGTGGATGTGGAGGAAATA fhuF fhuF fhuFp1 4605694 reverse fhuF(4604875,4605663) fhuF(4604875,4605663) 4604875-4605694 4605663-4605694 AATCATTATCATTTAGATTACTATCCCGATTA fhuF fhuF fhuFp2 4605752 reverse fhuF(4604875,4605663) fhuF(4604875,4605663) 4604875-4605752 4605663-4605752 ATCATTTGCAAGCCAGATAAATCCCTTGCTATCGGGTAAACCTATCGCTATGATTAGCAATCATTATCATTTAGATTACTATCCCGATTA yjjZ yjjZ yjjZp 4605777 forward yjjZ(4605804,4606040) yjjZ(4605804,4606040) 4605777-4606040 4605777-4605804 ATCATTATCAATGAAAGAGATGAAATCA leuQPV leuQPV leuQp 4606432 reverse leuQ(4606315,4606401) leuV(4606079,4606165) 4606079-4606432 4606401-4606432 GGTAGCAATTCTTTTTAAGAATTGATGGTATG holD-rimI-yjjG holD-rimI-yjjG holDp 4607781 forward holD(4607803,4608216) yjjG(4608646,4609323) 4607781-4609323 4607781-4607803 CTGACAACAGGAGCGATTCGCTA prfC prfC prfCp 4609358 forward prfC(4609414,4611003) prfC(4609414,4611003) 4609358-4611003 4609358-4609414 AATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTA osmY osmY osmYp 4611153 forward osmY(4611396,4612001) osmY(4611396,4612001) 4611153-4612001 4611153-4611396 GTGATGACATTTCTGACGGCGTTAAATACCGTTCAATGCGTAGATATCAGTATCTAAAGCCGTCGATTGTCATTCTACCGATATTAATAACTGATTCAGAGGCTGTAATGGTCGTTATTCATCACTCATCGCTTTTGTGATGGCGACCATTGACTTCTGTAGAGGGTGAAGTCTCTCCCTATTCAGCAATGCAACCTCGTGTTGCCAGGCTCAAATTACGAGCAAACATACAGGAATAAATCGA osmY osmY osmYp2 4611153 forward osmY(4611396,4612001) osmY(4611396,4612001) 4611153-4612001 4611153-4611396 GTGATGACATTTCTGACGGCGTTAAATACCGTTCAATGCGTAGATATCAGTATCTAAAGCCGTCGATTGTCATTCTACCGATATTAATAACTGATTCAGAGGCTGTAATGGTCGTTATTCATCACTCATCGCTTTTGTGATGGCGACCATTGACTTCTGTAGAGGGTGAAGTCTCTCCCTATTCAGCAATGCAACCTCGTGTTGCCAGGCTCAAATTACGAGCAAACATACAGGAATAAATCGA deoCABD deoCABD deoCp1 4616679 forward deoC(4617323,4618102) deoD(4620883,4621602) rho-independent(4621635,4621659) 4616679-4621659 4616679-4617323 ATACGGTTGCAACAACGCATCCAGTTGCCCCAGGTAGACCGGCATCGATGTGACCGACGGTACGTGGTGGTAAAGAATGGTCAGCAGAGAGAGTGCGTCATCAAGATCTTTCGCGCCTTCCAGCTCCAGCCATTCGGAACCGTTCGCCAGAAAACGGGCGTAATCGGGTAAGACATAGCGCGGTTTGTACGGCGCATGACCTTCAAACATATCGCAGATTACACCTTCATCCAGCGCGCGGCGGGCTTCGGCAGGAAGCTGTGGGTAAGGCAGATTGTTTTCTGCTTCCAGTGCCAGAAAATGGCGCTTCTGCTCCGGGCTAAGCACTGGGCTGGTGACAATTTGCTGGCAACGTTGTTGCAGTGCATTTTCATGAGAAGTGGGCATCTTCTTTTCCTTTTATGCCGAAGGTGATGCGCCATTGTAAGAAGTTTCGTGATGTTCACTTTGATCCTGATGCGTTTGCCACCACTGACGCATTCATTTGAAAGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAA 4621602-4621659 ATTGTGTTTCGCTGCAAGGCGATTGCCTTGTGAAGCCGGAGCGGGAGACTGCTCCGGC deoCABD deoCABD deoCp2 4617278 forward deoC(4617323,4618102) deoD(4620883,4621602) rho-independent(4621635,4621659) 4617278-4621659 4617278-4617323 AAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAA 4621602-4621659 ATTGTGTTTCGCTGCAAGGCGATTGCCTTGTGAAGCCGGAGCGGGAGACTGCTCCGGC deoCABD deoBD deoBp 4619567 forward deoB(4619603,4620826) deoD(4620883,4621602) rho-independent(4621635,4621659) 4619567-4621659 4619567-4619603 ATCATTTAAATTTGAAGCACTGAGTACGGAGAACATA 4621602-4621659 ATTGTGTTTCGCTGCAAGGCGATTGCCTTGTGAAGCCGGAGCGGGAGACTGCTCCGGC ytjB-lplA ytjB-lplA ytjBp 4624799 reverse ytjB(4624145,4624789) lplA(4623101,4624117) 4623101-4624799 4624789-4624799 AGGGTGGAAGA serB-radA-nadR serB-radA serBp 4624856 forward serB(4624895,4625863) radA(4625912,4627294) 4624856-4627294 4624856-4624895 GTTATTTTCCCTGCTTCGAACGATTTTACAGGAGCCTTAA slt slt sltp7 4630700 forward slt(4630733,4632670) slt(4630733,4632670) 4630700-4632670 4630700-4630733 GCATTGATGTATTTACACTTAGAGGATGCGCTTG trpR trpR trpRp 4632704 forward trpR(4632760,4633086) trpR(4632760,4633086) rho-independent(4633111,4633144) 4632704-4633144 4632704-4632760 AGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTA 4633086-4633144 ATTTTGTAGGCCTGATAAGACGTGGCGCATCAGGCATCGTGCACCGAATGCCGGATGCG creABCD creABC creAp2 4635243 forward creA(4635521,4635994) creC(4636696,4638120) 4635243-4638120 4635243-4635521 GACAGGGGCTGATCCAGATGACCTTCCAGCCAGATTAAAAGGTCGCGAATAATGCCGGCCTGATCCATAAAATATCCTCATCCTTTCAACAACGAGCACCTGACATCAGGTAATTGGATAATAGCATTTTTTGCTGTTTTAGCATTCAGTGTTTTTTTCTTAGTAGAGTATGTTTTAGGGCTTGACGGAAATAAAAGTATTGAGATTTTGTTCTTAATCAATATGTTATTTACCGTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATA rob rob robp 4635353 reverse rob(4634441,4635310) rob(4634441,4635310) 4634441-4635353 4635310-4635353 ACCTGATGTCAGGTGCTCGTTGTTGAAAGGATGAGGATATTTTA creABCD creABCD creAp 4635477 forward creA(4635521,4635994) creD(4638178,4639530) rho-independent(4639538,4639572) 4635477-4639572 4635477-4635521 GTGACGAACTAATTGCTCGTGTAATAGATAAAAATGGTAACAATA 4639530-4639572 AGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTT creABCD creD creDp 4638160 forward creD(4638178,4639530) creD(4638178,4639530) rho-independent(4639538,4639572) 4638160-4639572 4638160-4638178 ATTGCAAAGGAGAAGACTA 4639530-4639572 AGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTT arcA arcA arcAp1 4640508 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640508 4640306-4640508 GTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT arcA arcA arcAp2 4640512 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640512 4640306-4640512 AGCCGTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT arcA arcA arcAp3 4640535 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640535 4640306-4640535 GCTGTTAAAATGGTTAGGATGACAGCCGTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT arcA arcA arcAp4 4640599 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640599 4640306-4640599 ACTTGATATATGTCAACGAAGCGTAGTTTTATTGGGTGTCCGGCCCCTCTTAGCCTGTTATGTTGCTGTTAAAATGGTTAGGATGACAGCCGTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT arcA arcA arcAp5 4640681 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640681 4640306-4640681 TAGTTGGATTATTAAAATAATGTGACGAAAGCTAGCATTTAGATACGATGATTTCATCAAACTGTTAACGTGCTACAATTGAACTTGATATATGTCAACGAAGCGTAGTTTTATTGGGTGTCCGGCCCCTCTTAGCCTGTTATGTTGCTGTTAAAATGGTTAGGATGACAGCCGTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT arcA arcA arcAp6 4640688 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640688 4640306-4640688 ATGCAACTAGTTGGATTATTAAAATAATGTGACGAAAGCTAGCATTTAGATACGATGATTTCATCAAACTGTTAACGTGCTACAATTGAACTTGATATATGTCAACGAAGCGTAGTTTTATTGGGTGTCCGGCCCCTCTTAGCCTGTTATGTTGCTGTTAAAATGGTTAGGATGACAGCCGTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT arcA arcA arcAp7 4640801 reverse arcA(4639590,4640306) arcA(4639590,4640306) rho-independent(4639539,4639572) 4639539-4640801 4640306-4640801 CTGTACTAACGGTTGAGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAGGATAATTTTATAAAAAATAAATCTCGACAATTGGATTCACCACGTTTATTAGTTGTATGATGCAACTAGTTGGATTATTAAAATAATGTGACGAAAGCTAGCATTTAGATACGATGATTTCATCAAACTGTTAACGTGCTACAATTGAACTTGATATATGTCAACGAAGCGTAGTTTTATTGGGTGTCCGGCCCCTCTTAGCCTGTTATGTTGCTGTTAAAATGGTTAGGATGACAGCCGTTTTTGACACTGTCGGGTCCTGAGGGAAAGTACCCACGACCAAGCTAATGATGTTGTTGACGTTGATGGAAAGTGCATCAAGAACGCAATTACGTACTTTAGTCATGTTACGCCGATCATGTTAATTTGCAGCATGCATCAGGCAGGTCAGGGACTTTTGTACTTCCTGTTTCGATTTAGTTGGCAATTTAGGTAGCAAACA 4639539-4639590 ATCGGCTTTACCACCGTCAAAAAAAACGGCGCTTTTTAGCGCCGTTTTTATT gltI-sroC-gltJKL gltI-sroC-gltJKL gltIp2 reverse gltI(686839,687747) gltL(684530,685255) 684530-687747 garD garD garDp forward garD(3275282,3276853) garD(3275282,3276853) 3275282-3276853 gudPXD gudPXD gudPp reverse gudP(2920748,2922100) gudD(2918045,2919385) 2918045-2922100 lptD-surA-pdxA-rsmA-apaGH pdxA-rsmA-apaGH pdxAp reverse pdxA(52427,53416) apaH(50380,51222) 50380-53416 lptD-surA-pdxA-rsmA-apaGH pdxA-rsmA pdxAp reverse pdxA(52427,53416) rsmA(51609,52430) 51609-53416 napFDAGHBC-ccmABCDEFGH ccmABCDEFGH ccmAp reverse ccmA(2297021,2297644) ccmH(2291358,2292410) 2291358-2297644 fimB fimB fimBp3 forward fimB(4540957,4541559) fimB(4540957,4541559) 4540957-4541559 lptD-surA-pdxA-rsmA-apaGH surA-pdxA-rsmA-apaGH surAp reverse surA(53416,54702) apaH(50380,51222) 50380-54702 ldcC ldcC ldcCp forward ldcC(209679,211820) ldcC(209679,211820) 209679-211820 gatR gatR_2 gatR_2p (209679,211820) (209679,211820) - rtcR rtcR rtcRp forward rtcR(3558268,3559866) rtcR(3558268,3559866) 3558268-3559866 rplKAJL-rpoBC rplL rplLp forward rplL(4180560,4180925) rplL(4180560,4180925) 4180560-4180925 allR allR allRp forward allR(533011,533826) allR(533011,533826) 533011-533826 yjcS yjcS yjcSp reverse yjcS(4304612,4306597) yjcS(4304612,4306597) 4304612-4306597 fliDST fliDST fliDp1 forward fliD(2003872,2005278) fliT(2005713,2006078) 2003872-2006078 yhiL yhiL yhiLp reverse yhiL(3632852,3634458) yhiL(3632852,3634458) 3632852-3634458 yffB-dapE-ypfN yffB-dapE-ypfN yffBp forward yffB(2591247,2591603) ypfN(2592762,2592962) 2591247-2592962 hydN-hypF hypF hypFp1 reverse hypF(2835173,2837425) hypF(2835173,2837425) 2835173-2837425 udk-dcd dcd dcdp reverse dcd(2141634,2142215) dcd(2141634,2142215) 2141634-2142215 trkA trkA trkAp forward trkA(3436518,3437894) trkA(3436518,3437894) 3436518-3437894 yehS yehS yehSp reverse yehS(2211726,2212196) yehS(2211726,2212196) 2211726-2212196 mnmA mnmA mnmAp reverse mnmA(1192667,1193773) mnmA(1192667,1193773) 1192667-1193773 yfcD yfcD yfcDp reverse yfcD(2418634,2419176) yfcD(2418634,2419176) 2418634-2419176 hda hda hdap reverse hda(2618075,2618776) hda(2618075,2618776) 2618075-2618776 folX-yfcH folX-yfcH folXp forward folX(2421325,2421687) yfcH(2421708,2422601) 2421325-2422601 cmtBA-yggPF-fumE-yggC yggDC fumEp reverse fumE(3074686,3075195) yggC(3073976,3074689) 3073976-3075195 tsaB-yeaY tsaB-yeaY tsaBp reverse tsaB(1890572,1891267) yeaY(1889951,1890532) 1889951-1891267 yfhL yfhL yfhLp forward yfhL(2699663,2699923) yfhL(2699663,2699923) 2699663-2699923 deoR deoR deoRp reverse deoR(881976,882734) deoR(881976,882734) 881976-882734 coaE-zapD-yacG yacG yacGp reverse yacG(111649,111846) yacG(111649,111846) 111649-111846 ydeQ ydeQ ydeQp reverse ydeQ(1586820,1587734) ydeQ(1586820,1587734) 1586820-1587734 yfcE yfcE yfcEp reverse yfcE(2419234,2419788) yfcE(2419234,2419788) 2419234-2419788 aspU aspU aspUp forward aspU(228928,229004) aspU(228928,229004) rho-independent(228998,229052) 228928-229052 229004-229052 ACTTATTAAGAAGCCTCGAGTTAACGCTCGAGGTTTTTTTTCGTCTGTA pgsA pgsA pgsAp reverse pgsA(1992269,1992817) pgsA(1992269,1992817) 1992269-1992817 pdxH-tyrS-pdxY pdxY pdxYp reverse pdxY(1715026,1715889) pdxY(1715026,1715889) 1715026-1715889 yhfK yhfK yhfKp forward yhfK(3486791,3488893) yhfK(3486791,3488893) 3486791-3488893 insO insN-2 insNp (3486791,3488893) (3486791,3488893) - yegW yegW yegWp reverse yegW(2182035,2182781) yegW(2182035,2182781) 2182035-2182781 pspABCDE pspE pspEp forward pspE(1369689,1370003) pspE(1369689,1370003) 1369689-1370003 xseB-ispA-dxs-yajO yajO yajOp reverse yajO(437161,438135) yajO(437161,438135) 437161-438135 nrdDG nrdG nrdGp reverse nrdG(4459900,4460364) nrdG(4459900,4460364) 4459900-4460364 fucPIKUR fucR fucRp forward fucR(2939368,2940099) fucR(2939368,2940099) 2939368-2940099 aceBAK aceK aceKp forward aceK(4218596,4220332) aceK(4218596,4220332) 4218596-4220332 yadMLKC yadC yadCp reverse yadC(149715,150953) yadC(149715,150953) 149715-150953 gcl-hyi-glxR-ybbW-allB-ybbY-glxK glxK glxKp forward glxK(541888,543033) glxK(541888,543033) 541888-543033 gcvTHP gcvP gcvPp reverse gcvP(3046168,3049041) gcvP(3046168,3049041) rho-independent(3046126,3046145) 3046126-3049041 3046126-3046168 ATTCACTGATTCGACTATTTTCTAAAGGCGCTTCGGCGCCTTT rrsG-gltW-rrlG-rrfG rrfG rrfGp reverse rrfG(2726069,2726188) rrfG(2726069,2726188) 2726069-2726188 cysJIH cysH cysHp reverse cysH(2887578,2888312) cysH(2887578,2888312) 2887578-2888312 serV-argVYZQ argQ argQp reverse argQ(2817784,2817860) argQ(2817784,2817860) 2817784-2817860 cadBA cadA cadAp reverse cadA(4356470,4358617) cadA(4356470,4358617) 4356470-4358617 csgBAC csgC csgCp forward csgC(1104961,1105293) csgC(1104961,1105293) 1104961-1105293 ybjC-nfsA-rimK-ybjN ybjN ybjNp forward ybjN(892957,893433) ybjN(892957,893433) 892957-893433 dhaKLM dhaM dhaMp reverse dhaM(1247696,1249114) dhaM(1247696,1249114) 1247696-1249114 cvpA-purF-ubiX ubiX ubiXp reverse ubiX(2428057,2428626) ubiX(2428057,2428626) rho-independent(2428030,2428048) 2428030-2428626 2428030-2428057 ACTCCGCTGTTGCCCTGTTTCAGGGCAA yjfKLMC yjfKLMC yjfKp forward yjfK(4411302,4411961) yjfC(4413028,4414191) 4411302-4414191 yjiXA yjiXA yjiXp reverse yjiX(4588876,4589079) yjiA(4587909,4588865) 4587909-4589079 lacZYA lacYA lacYp reverse lacY(361926,363179) lacA(361249,361860) rho-independent(361212,361236) 361212-363179 361212-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGC lacZYA lacYA lacYp reverse lacY(361926,363179) lacA(361249,361860) rho-independent(361140,361179) 361140-363179 361140-361249 AATTATAAAAATTGCCTGATACGCTGCGCTTATCAGGCCTACAAGTTCAGCGATCTACATTAGCCGCATCCGGCATGAACAAAGCGCAGGAACAAGCGTCGCATCATGCC rfbBDACX rfbACX rfbAp reverse rfbA(2110138,2111019) rfbX(2108337,2109584) 2108337-2111019 rrsH-ileV-alaV-rrlH-rrfH rrlH-rrfH rrlHp forward rrlH(225759,228662) rrfH(228756,228875) 225759-228875 rirA-waaQGPSBOJYZU rfaZ-waaU waaZp reverse waaZ(3799345,3800196) waaU(3798239,3799312) 3798239-3800196 rrsB-gltT-rrlB-rrfB rrlB-rrfB rrlBp forward rrlB(4168641,4171544) rrfB(4171637,4171756) rho-independent(4171760,4171803) 4168641-4171803 4171756-4171803 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAT rrsB-gltT-rrlB-rrfB rrlB-rrfB rrlBp forward rrlB(4168641,4171544) rrfB(4171637,4171756) rho-independent(4171935,4171962) 4168641-4171962 4171756-4171962 TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTT caiTABCDE caiCDE caiCp reverse caiC(36271,37824) caiE(34781,35371) 34781-37824 rrsE-gltV-rrlE-rrfE rrlE-rrfE rrlEp forward rrlE(4210043,4212946) rrfE(4213040,4213159) rho-independent(4213155,4213209) 4210043-4213209 4213159-4213209 TCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAAT nuoABCEFGHIJKLMN nuoMN nuoMp reverse nuoM(2391512,2393041) nuoN(2390048,2391505) rho-independent(2390005,2390023) 2390005-2393041 2390005-2390048 ATCTGTTACTTTGTAAGTCAGAAAGCCGCCGACATGCTCGGCGG mreBCD mreCD mreCp reverse mreC(3398875,3399978) mreD(3398387,3398875) 3398387-3399978 rrsA-ileT-alaT-rrlA-rrfA rrlA-rrfA rrlAp forward rrlA(4037519,4040423) rrfA(4040517,4040636) 4037519-4040636 yafY-ykfBF-yafX-ykfGH-yafW-ykfI ykfGH-yafW-ykfI ykfGp reverse ykfG(264256,264732) ykfI(263328,263669) 263328-264732 glcDEFGBA glcBA glcBp reverse glcB(3121634,3123805) glcA(3119597,3121279) 3119597-3123805 deoCABD deoABD deoAp forward deoA(4618229,4619551) deoD(4620883,4621602) 4618229-4621602 menFDHBCE menD-yfbB-menBCE menDp reverse menD(2377589,2379259) menE(2373648,2375003) 2373648-2379259 aroL-yaiA-aroM yaiA-aroM yaiAp forward yaiA(406979,407170) aroM(407428,408105) 406979-408105 alsRBACE alsBACE alsBp reverse alsB(4311107,4312042) alsE(4307783,4308478) 4307783-4312042 tyrTV-tpr tyrV-tpr tyrVp reverse tyrV(1287244,1287328) tpr(1287087,1287176) rho-dependent(1287009,1287033) 1287009-1287328 1287009-1287087 AGTAATCCTTCCCCCACCACCATCACTTTCAAAAGTCCCTGAACTCTCAAGCGAATCCGCAATCAAATATTCTGCCCAT pspABCDE pspBCDE pspBp forward pspB(1368801,1369025) pspE(1369689,1370003) 1368801-1370003 tdcABCDEFG tdcBCDEFG tdcBp reverse tdcB(3265039,3266028) tdcG(3258285,3259649) 3258285-3266028 phnCDEFGHIJKLMNOP phnLMNOP phnLp reverse phnL(4317215,4317895) phnP(4314344,4315102) 4314344-4317895 yjiT yjiT yjiTp forward yjiT(4572414,4573931) yjiT(4572414,4573931) 4572414-4573931 metT-leuW-glnUW-metU-glnVX glnW-metU-glnVX glnWp reverse glnW(696756,696830) glnX(696430,696504) rho-independent(696392,696429) 696392-696830 696392-696430 ACATTAAAAAAGCTCGCTTCGGCGAGCTTTTTGCTTTTC yafU yafU yafUp reverse yafU(238746,239084) yafU(238746,239084) 238746-239084 yehR yehR yehRp forward yehR(2211225,2211686) yehR(2211225,2211686) 2211225-2211686 safA-ydeO ydeO ydeOp reverse ydeO(1582926,1583687) ydeO(1582926,1583687) 1582926-1583687 yiaA yiaA yiaAp reverse yiaA(3726924,3727361) yiaA(3726924,3727361) 3726924-3727361 yccE yccE yccEp forward yccE(1064036,1065292) yccE(1064036,1065292) 1064036-1065292 yrdA yrdA yrdAp forward yrdA(3429236,3429790) yrdA(3429236,3429790) 3429236-3429790 yfjV yfjV yfjVp reverse yfjV(2772167,2773182) yfjV(2772167,2773182) 2772167-2773182 yrfG-hslRO yrfG-hslR yrfGp forward yrfG(3528669,3529337) hslR(3529348,3529749) 3528669-3529749 rhsA-yibA yibA yibAp forward yibA(3766337,3767179) yibA(3766337,3767179) 3766337-3767179 casABCDE12 casDE-ygbTF casDp reverse casD(2880374,2881048) cas2(2878569,2878853) 2878569-2881048 osmF-yehYXW osmF-yehYXW osmFp2 reverse osmF(2218564,2219481) yehW(2215745,2216476) 2215745-2219481 hspQ hspQ hspQp reverse hspQ(1028404,1028721) hspQ(1028404,1028721) 1028404-1028721 nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC hfq-hflXKC hfqp1 forward hfq(4400288,4400596) hflC(4403300,4404304) 4400288-4404304 nnr-tsaE-amiB-mutL-miaA-hfq-hflXKC tsaE-amiB-mutL-miaA-hfq-hflXKC tsaEp forward tsaE(4395585,4396046) hflC(4403300,4404304) 4395585-4404304 cas3 cas3 cas3p reverse cas3(2884553,2887219) cas3(2884553,2887219) 2884553-2887219