RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [ArcA,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[ArcA,+] Regulatory phrases      

[ArcA,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [ArcA,+,-77.5]   cydAp2
    [ArcA,+,-44]   cydDp
    [ArcA,+,5]   focAp2
    [ArcA,+,-67] [ArcA,+,-7.5]   hyaAp
    [ArcA,+,-67] [ArcA,+,-7.5]   hyaAp2
  [ArcA,+,-170.5] [ArcA,+,-16.5]   iraMp1
  [ArcA,+,-99] [ArcA,+,-82]   grcAp1
  [ArcA,+,-251] [ArcA,+,-114] [ArcA,+,-6]   focAp1
  [ArcA,+,-315] [ArcA,+,-304] [ArcA,+,-293] [ArcA,+,-84] [ArcA,+,135] cydAp1
  [ArcA,+,-101] [ArcA,+,-91] [ArcA,+,28] [ArcA,+,50] caiTp
  [ArcA,+,-340]     dcuCp
  [ArcA,+,-237]     treBp
  [ArcA,+,-197]     appYp2
  [ArcA,+,-137]     moeAp
  [ArcA,+,-97]     rutAp
  [ArcA,+,-95.5]     dpiBp1
  [ArcA,+,-211] [ArcA,+,-137]     sdhCp
      [ArcA,+,64.5] ybdNp


[ArcA,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [FNR,+,-167.5] [FNR,-,-115.5] [ArcA,+,-77.5] cydAp2
  [NarL,+,-126.0] [ArcA,+,-44.0] [NarL,+,-80.0] [FNR,+,-90.5] cydDp
  [ArcA,+,5.0] focAp2
  [YdeO,+,-61.0] [IscR,-,-39.0,-42.0] [ArcA,+,-67.0,-7.5] [NarP,-,7.0,-10.0] [NarL,-,7.0,-10.0] [Fis,-,-21.0] hyaAp
  [YdeO,+,-61.0] [IscR,-,-39.0,-42.0] [ArcA,+,-67.0,-7.5] [NarP,-,-10.0,7.0] [NarL,-,7.0,-10.0] [Fis,-,-21.0] hyaAp2
  [ArcA,+,-170.5] [PhoP,+,-199.5] [ArcA,+,-16.5] [FNR,+,-70.5] [PhoP,+,-68.0] iraMp1
  [ArcA,+,-99.0] [Fis,+,-159.0,-117.0] [FNR,-,-93.5] [PdhR,-,17.0] [ArcA,+,-82.0] [CRP,+,-40.5] [Fis,+,-10.0] [FNR,+,-40.5] [FNR,-,-40.5] grcAp1
  [ArcA,+,-251.0,-114.0] [IHF,+,-112.5] [NarL,-,-152.0,-226.0,-253.0,-270.0,-286.0,-101.0,-235.0,-346.0,-348.0] [ArcA,+,-6.0] [NarL,-,-20.0,-37.0] [CRP,+,-40.5] [FNR,+,-40.5] focAp1
  [ArcA,+,-315.0,-293.0,-304.0] [ArcA,+,-84.0] [FNR,-,-53.5,-1.5] [ArcA,+,135.0] cydAp1
  [ArcA,+,-101.0] [CaiF,+,-151.5,-227.5,-208.5,-170.5] [ArcA,+,28.0,-91.0] [CRP,+,-41.5] [FNR,+,-41.5,-90.5] [ArcA,+,50.0] caiTp
  [ArcA,+,-340.0] [FNR,+,-115.5] [FNR,+,-33.5,-63.5] dcuCp
  [ArcA,+,-237.0] [CRP,-,12.0] [TreR,-,-81.0,-48.0] [CRP,?,-60.5] treBp
  [ArcA,+,-197.0] appYp2
  [ArcA,+,-137.0] [NarL,+,-177.0,-109.0] [FNR,-,34.5] moeAp
  [ArcA,+,-97.0] [RutR,-,-102.5] [NtrC,+,-124.0,-145.0] [PhoP,+,-106.0] rutAp
  [ArcA,+,-95.5] [NarL,-,20.0] [CRP,-,45.5] [DpiA,+,104.0,146.0,77.0] [FNR,-,45.5] dpiBp1
  [ArcA,+,-137.0,-211.0] [ArcA,-,-27.0,-32.0] [CRP,+,-83.5] [Fur,+,-34.0] [ArcA,-,257.0] sdhCp
  [CysB,+,-177.5] [FNR,+,-303.5] [FNR,+,-26.5] [ArcA,+,64.5] ybdNp

  

  

RegulonDB