RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [FNR,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[FNR,-] Regulatory phrases      

[FNR,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [FNR,-,-55.5]   arcAp3
    [FNR,-,-50.5]   pdhRp
    [FNR,-,-50.5]   pdhRp2
    [FNR,-,-40.5]   nuoAp2
    [FNR,-,-40.5]   acnAp2
    [FNR,-,-37.5]   sodAp
    [FNR,-,-28.5]   yeiLp
    [FNR,-,-26.5]   gltBp
    [FNR,-,-26.5]   gltBp2
    [FNR,-,-24.5]   hemAp1
    [FNR,-,-18.5]   tpxp
    [FNR,-,-10.5]   aldAp
    [FNR,-,-.5]   ubiCp
    [FNR,-,-.5]   fnrp
    [FNR,-,5.5]   hmpp
    [FNR,-,11.5]   gadAp2
    [FNR,-,11.5]   gadAp
    [FNR,-,11.5]   citCp2
    [FNR,-,29]   puuAp
    [FNR,-,-85.5] [FNR,-,-33.5]   cydAp3
    [FNR,-,-53.5] [FNR,-,-1.5]   cydAp1
  [FNR,-,-96.5] [FNR,-,-44.5]   cydAp4
  [FNR,-,-94.5] [FNR,-,-50.5]   ndhp
  [FNR,-,-93.5] [FNR,-,-40.5]   grcAp1
  [FNR,-,-106.5] [FNR,-,-75] [FNR,-,107.5] narXp
  [FNR,-,-192.5]     purMp
  [FNR,-,-192.5]     cyoAp
  [FNR,-,-162.5]     dppAp
  [FNR,-,-159.5]     gadXp
  [FNR,-,-140.5]     norVp
  [FNR,-,-126.5]     ompWp
  [FNR,-,-115.5]     cydAp2
  [FNR,-,-105.5]     hyfAp
  [FNR,-,-97.5]     fdnGp
      [FNR,-,34.5] moeAp
      [FNR,-,45.5] dpiBp1


[FNR,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [FNR,-,-55.5] arcAp3
  [BtsR,-,-203.0,-188.0] [CRP,+,-377.5,-110.5] [Cra,-,-185.5] [PdhR,-,19.0] [CRP,+,-70.5,-62.5,-82.5,-50.5] [FNR,+,-50.5] [FNR,-,-50.5] pdhRp
  [BtsR,-,-203.0,-188.0] [CRP,+,-377.5,-110.5] [Cra,-,-185.5] [PdhR,-,19.0] [CRP,+,-50.5,-70.5,-82.5,-62.5] [FNR,+,-50.5] [FNR,-,-50.5] pdhRp2
  [ArcA,-,-108.0] [NarL,+,-122.0] [IHF,-,-83.0,-74.0,-66.0] [FNR,-,-40.5] nuoAp2
  [ArcA,-,-34.0] [SoxS,+,-51.5] [Rob,+,-51.5] [CRP,+,-40.5] [MarA,+,-51.5] [FNR,-,-40.5] acnAp2
  [CRP,+,-99.5] [ArcA,-,-10.0,-38.0,-21.0] [SoxS,+,-44.0] [Rob,+,-40.5] [SoxR,+,9.0] [Fur,-,-36.0,-30.0,-33.0,-42.0] [IHF,-,-48.0,-1.0,-68.0,-24.0] [MarA,+,-40.5] [FNR,-,-37.5] sodAp
  [IHF,+,-227.0,-193.0] [Lrp,+,-120.0] [FNR,-,-28.5] yeiLp
  [Lrp,+,-246.0,-215.0,-108.0,-152.0] [ArgR,-,-352.0,-331.5] [GadE,+,-284.0] [IHF,+,-85.0,-89.0] [CRP,-,-65.5] [FNR,-,-26.5] gltBp
  [Lrp,+,-108.0,-246.0,-152.0,-215.0] [ArgR,-,-331.5,-352.0] [GadE,+,-284.0] [IHF,+,-89.0,-85.0] [CRP,-,-65.5] [FNR,-,-26.5] gltBp2
  [FNR,-,-24.5] hemAp1
  [ArcA,-,-22.0] [FNR,-,-18.5] tpxp
  [ArcA,-,-157.0,-137.0] [SoxS,+,-161.0] [Rob,+,-161.0] [MarA,+,-161.0] [ArcA,-,2.0,13.0,-5.0] [DnaA,-,-7.5] [CRP,+,-59.5] [FNR,-,-10.5] aldAp
  [IHF,-,-12.0] [FNR,-,-0.5] ubiCp
  [IHF,+,-104.0] [FNR,-,-0.5] fnrp
  [MetR,+,-80.0] [NsrR,-,2.0,20.0,-38.0] [Fur,-,6.0] [FNR,-,5.5] hmpp
  [TorR,-,-122.5] [GadW,-,-121.5,-100.5] [GadX,+,-121.5,-100.5] [Fis,-,-94.0,-118.0,-147.0] [GadW,+,-121.5,-100.5] [GadW,-,-57.5,-78.0] [RcsB,-,-18.5] [GadE-RcsB,+,-62.5] [GadX,+,-10.5,-31.5,-78.0,-57.5] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-57.5,-78.0] [FNR,-,11.5] [TorR,-,73.5] gadAp2
  [TorR,-,-122.5] [GadW,-,-100.5,-121.5] [GadX,+,-121.5,-100.5] [Fis,-,-147.0,-94.0,-118.0] [GadW,+,-121.5,-100.5] [GadW,-,-57.5,-78.0] [RcsB,-,-18.5] [GadE-RcsB,+,-62.5] [GadX,+,-10.5,-57.5,-31.5,-78.0] [Fis,-,-18.0] [CRP,-,-62.5] [GadW,+,-57.5,-78.0] [FNR,-,11.5] [TorR,-,73.5] gadAp
  [CRP,-,11.5] [DpiA,+,-21.0,-90.0,-48.0] [FNR,-,11.5] [NarL,-,37.0] citCp2
  [ArcA,-,-165.0] [PuuR,-,-126.5,-161.5] [PuuR,-,11.5,-84.5] [FNR,-,29.0] puuAp
  [FNR,-,-33.5,-85.5] cydAp3
  [ArcA,+,-315.0,-293.0,-304.0] [ArcA,+,-84.0] [FNR,-,-53.5,-1.5] [ArcA,+,135.0] cydAp1
  [FNR,-,-96.5] [FNR,-,-44.5] cydAp4
  [Fis,+,-123.0] [FNR,-,-94.5] [PdhR,-,-35.0] [NsrR,-,6.0] [ArcA,-,-57.0] [Fis,+,-72.0] [IHF,-,26.0,-17.0,-58.0] [FNR,-,-50.5] [ArcA,-,68.0,57.0,66.0,52.0,36.0] [Fis,-,51.0] ndhp
  [Fis,+,-159.0,-117.0] [ArcA,+,-99.0] [FNR,-,-93.5] [PdhR,-,17.0] [CRP,+,-40.5] [Fis,+,-10.0] [FNR,+,-40.5] [ArcA,+,-82.0] [FNR,-,-40.5] grcAp1
  [ModE,+,-141.5] [FNR,-,-106.5] [FNR,-,-75.0] [FNR,-,107.5] narXp
  [FNR,-,-192.5] [PurR,-,-27.5] purMp
  [PdhR,-,-177.0] [ArcA,-,-200.0] [CRP,+,-191.5] [Fur,-,-213.0] [Cra,-,-268.5] [FNR,-,-192.5] [CRP,+,-37.5] [HprR,-,69.5] [CusR,+,69.5] cyoAp
  [FNR,-,-162.5] [IHF,+,1848.0] dppAp
  [RutR,-,-824.5] [FNR,-,-159.5] gadXp
  [NorR,+,-132.0,-111.0] [FNR,-,-140.5] [IHF,+,-48.0] [NorR,+,-87.0] [IHF,-,17.0] [NarP,-,-69.0,-78.0] [NarL,-,-78.0,-69.0] norVp
  [FNR,-,-126.5] [ArcA,-,1.5] [FNR,+,-81.5] [NarL,-,-18.5] [CRP,-,-42.5] ompWp
  [FNR,+,-167.5] [FNR,-,-115.5] [ArcA,+,-77.5] cydAp2
  [CRP,+,-160.5] [HyfR,+,-129.5] [FhlA,+,-130.0] [FNR,-,-105.5] hyfAp
  [NarL,+,-100.0,-124.0,-109.0] [FNR,+,-97.5] [NarP,-,-109.0,-100.0] [FNR,-,-97.5] [NarL,+,-77.0] [FNR,+,-42.5] fdnGp
  [NarL,+,-177.0,-109.0] [ArcA,+,-137.0] [FNR,-,34.5] moeAp
  [ArcA,+,-95.5] [NarL,-,20.0] [CRP,-,45.5] [DpiA,+,104.0,146.0,77.0] [FNR,-,45.5] dpiBp1

  

  

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