RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [Cra,+] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[Cra,+] Regulatory phrases      

[Cra,+] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [Cra,+,-76.5]   icdAp2
    [Cra,+,-48.5]   ptsHp2
    [Cra,+,-45.5]   crpp1
    [Cra,+,-45.5]   ppsAp
  [Cra,+,-198.5]     aroPp2
  [Cra,+,-177.5]     aroPp1
  [Cra,+,-166.5]     aceBp
  [Cra,+,-139.5]     pckp
  [Cra,+,-134.5] [Cra,+,-105.5]     cydAp5
  [Cra,+,-563.5] [Cra,+,-227.5] [Cra,+,-196.5]   [Cra,+,46.5] csgDp3
  [Cra,+,-563.5] [Cra,+,-227.5] [Cra,+,-196.5]   [Cra,+,46.5] csgDp1


[Cra,+] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [Cra,+,-76.5] icdAp2
  [CRP,-,-35.5] [Cra,+,-48.5] ptsHp2
  [Fis,-,-92.0] [CRP,+,-59.5] [Cra,+,-45.5] [Fis,-,69.0,31.0,49.0] [CRP,-,41.5] crpp1
  [Cra,+,-45.5] ppsAp
  [Cra,+,-198.5] [TyrR,-,19.5] [TyrR,-,42.5] aroPp2
  [Cra,+,-177.5] [TyrR,-,63.5,40.5] aroPp1
  [IHF,+,-159.0] [IclR,-,-122.0,-131.0,-104.0,-141.0] [Cra,+,-166.5] [IHF,+,-72.0] [IclR,-,-26.0,-38.0,-53.0] [CRP,-,-30.5] aceBp
  [Cra,+,-139.5] [DcuR,+,-13.0,-64.0] [CRP,-,13.5] [CRP,+,-90.5] pckp
  [Cra,+,-134.5,-105.5] cydAp5
  [CsgD,+,-118.5,-166.5] [RcdA,+,-298.5] [IHF,+,-173.5] [MlrA,+,-129.5] [CpxR,-,-178.0,-186.0,-141.0,-108.5,-166.0,-95.5,-100.0,-129.5] [CRP,+,-170.5] [Cra,+,-196.5,-227.5,-563.5] [CsgD,+,29.5] [BasR,+,-90.5] [OmpR,+,-49.5] [IHF,+,-66.5] [CpxR,-,-21.5,-43.0,-48.0,-73.5,-52.0] [RstA,-,-50.5] [MqsA,-,-83.5] [BtsR,-,-25.0] [CRP,+,-42.5] [BtsR,-,37.0] [Cra,+,46.5] csgDp3
  [CsgD,+,-166.5,-118.5] [RcdA,+,-298.5] [IHF,+,-173.5] [MlrA,+,-129.5] [CpxR,-,-166.0,-178.0,-186.0,-129.5,-100.0,-108.5,-95.5,-141.0] [CRP,+,-170.5] [Cra,+,-563.5,-196.5,-227.5] [CsgD,+,29.5] [BasR,+,-90.5] [OmpR,+,-49.5] [IHF,+,-66.5] [CpxR,-,-48.0,-73.5,-21.5,-52.0,-43.0] [RstA,-,-50.5] [MqsA,-,-83.5] [BtsR,-,-25.0] [CRP,+,-42.5] [BtsR,-,37.0] [Cra,+,46.5] csgDp1

  

  

RegulonDB