RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [NagC,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[NagC,-] Regulatory phrases      

[NagC,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [NagC,-,-28]   ydePp
    [NagC,-,-14]   dinIp
    [NagC,-,2]   creAp
    [NagC,-,2]   galPp
    [NagC,-,7]   ptsHp3
    [NagC,-,13]   ptsHp
    [NagC,-,13]   ptsHp4
    [NagC,-,16]   ptsHp5
    [NagC,-,-80] [NagC,-,4]   manXp
  [NagC,-,-277] [NagC,-,-65]   nanCp
  [NagC,-,-244] [NagC,-,-22]   chiZp
  [NagC,-,-140] [NagC,-,-16]   ydeNp
  [NagC,-,-125] [NagC,-,-31]   nagEp
  [NagC,-,-112] [NagC,-,1]   chbBp
  [NagC,-,-101] [NagC,-,-7]   nagBp
  [NagC,-,-96]   [NagC,-,58] glmUp2


[NagC,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [EvgA,+,-74.5] [NagC,-,-28.0] [PhoP,-,34.5] ydePp
  [LexA,-,-7.5] [NagC,-,-14.0] dinIp
  [NagC,-,2.0] creAp
  [GalR,-,-207.5,-243.5,-107.5,-178.5] [GalS,-,-207.5,-107.5,-243.5,-178.5] [GalR,-,-61.5] [GalS,-,-61.5] [CRP,+,-42.5] [NagC,-,2.0] [GalR,-,136.5] [GalS,-,136.5] galPp
  [NagC,-,7.0] ptsHp3
  [Mlc,-,13.0] [CRP,+,-63.5] [NagC,-,13.0] ptsHp
  [Mlc,-,13.0] [CRP,+,-63.5] [NagC,-,13.0] ptsHp4
  [CRP,+,-60.5] [NagC,-,16.0] ptsHp5
  [Mlc,-,-13.0,-79.0] [CRP,+,-92.5,-40.5] [NagC,-,4.0,-80.0] [Cra,-,40.5] manXp
  [NagC,-,-277.0] [NanR,-,-11.5,6.5,-2.5] [CRP,+,-61.5] [NagC,-,-65.0] nanCp
  [NagC,-,-244.0] [CRP,+,-70.5] [NagC,-,-22.0] chiZp
  [GadX,-,-233.5] [NagC,-,-140.0] [GadX,-,-69.0] [NagC,-,-16.0] ydeNp
  [NagC,-,-125.0] [CRP,-,-27.5,-61.5] [CRP,+,-27.5,-61.5] [NagC,-,-31.0] nagEp
  [NagC,-,-112.0] [ChbR,+,-38.0,-61.0] [ChbR,-,-38.0,-61.0] [CRP,+,-83.5] [NagC,-,1.0] chbBp
  [CRP,-,-104.5] [CRP,+,-104.5] [NagC,-,-101.0] [CRP,-,-70.5] [CRP,+,-70.5] [NagC,-,-7.0] nagBp
  [NagC,-,-96.0] [NagC,-,58.0] glmUp2

  

  

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