RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by [CytR,-] regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


[CytR,-] Regulatory phrases      

[CytR,-] phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
    [CytR,-,-22]   ycdZp4
    [CytR,-,-83] [CytR,-,-64.5]   ppiAp2
    [CytR,-,-82.5] [CytR,-,-64]   cddp
    [CytR,-,-73.5] [CytR,-,-54.5]   rpoHp5
    [CytR,-,-59] [CytR,-,-40.5]   rpoHp4
    [CytR,-,-52] [CytR,-,-33.5]   rpoHp3
    [CytR,-,-48] [CytR,-,-29.5]   ppiAp3
    [CytR,-,-29] [CytR,-,-10.5]   ppiAp4
    [CytR,-,-87.5] [CytR,-,-70.5] [CytR,-,-61]   deoCp2
    [CytR,-,-87] [CytR,-,-70.5] [CytR,-,-61]   udpP
    [CytR,-,-76.5] [CytR,-,-61] [CytR,-,-53]   nupGp
    [CytR,-,-68.5] [CytR,-,-57.5] [CytR,-,-31.5]   tsxp2
    [CytR,-,-59] [CytR,-,-43] [CytR,-,-22]   cytRp


[CytR,-] phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [CytR,-,-22.0] [CRP,-,4.0,-48.0] [CRP,+,-48.0,4.0] ycdZp4
  [CRP,-,-95.5] [CytR,-,-64.5,-83.0] [CRP,-,-42.5] [CRP,+,-42.5] ppiAp2
  [CRP,-,-94.5] [CytR,-,-64.0,-82.5] [CRP,-,-42.5] [NsrR,-,9.0] [CRP,+,-42.5,-92.5] cddp
  [CRP,-,-94.5] [CRP,+,-94.5] [CytR,-,-73.5,-54.5] [CRP,-,-41.5] [CRP,+,-41.5,-48.5] rpoHp5
  [CytR,-,-40.5,-59.0] [CRP,-,-27.5,-80.5] [DnaA,-,-55.0,-31.0] rpoHp4
  [CytR,-,-52.0,-33.5] [CRP,-,-73.5,-20.5] [DnaA,-,-48.0] rpoHp3
  [CytR,-,-29.5,-48.0] [CRP,-,-60.5,-7.5] [CRP,+,-60.5] ppiAp3
  [CytR,-,-10.5,-29.0] [CRP,-,12.5] ppiAp4
  [CRP,-,-93.5] [DeoR,-,-308.0,-887.0] [CRP,+,-93.5] [Fis,+,-102.0] [CytR,-,-87.5,-61.0,-70.5] [DeoR,-,-8.0] [ModE,-,-35.0] [CRP,+,-40.5] deoCp2
  [CRP,-,-93.5] [CRP,+,-93.5] [CytR,-,-87.0,-70.5,-61.0] [CRP,+,-41.5] udpP
  [CytR,-,-53.0,-61.0,-76.5] [CRP,-,-40.5,-92.5] [CRP,+,-42.5,-92.5] [CRP,-,56.5] [CRP,+,56.5] nupGp
  [CytR,-,-57.5,-31.5,-68.5] [CRP,-,-73.5,-40.5] [CRP,+,-73.5,-40.5] tsxp2
  [CytR,-,-22.0,-43.0,-59.0] [CRP,-,-64.5] [CRP,+,-64.5] cytRp

  

  

RegulonDB