RegulonDB RegulonDB 11.2: Regulatory Phrase Regulatory Phrase
   

  

List of promoters regulated by DnaA,- regulatory phrase

  

List of promoters with sites of this regulated phrase. Proximal sites are those within the interval from -93 to +30 with respect to the TSS (+1); from where the TF can in principle directly interact with RNA polymerase. All other sites are considered remote, either upstream or downstream.

Promoters and their regulatory phrases

  


DnaA,- Regulatory phrases      

DnaA,- phrase
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
      rpoHp3
      nrdAp
      aldAp
      dnaAp1
      yjeVp
      rpoHp4
      recNp
      uvrBp3
      dnaAp2
    uvrBp2
      guaBp


DnaA,- phrase and all other phrases that regulate this promoter(s). List of promoters and their corresponding regulatory phrases.
  Remote upstream site(s) Proximal site(s) Remote downstream site(s) Promoter name
  [CytR,-,-52.0,-33.5] [CRP,-,-73.5,-20.5] rpoHp3
  [CRP,+,-136.5] [Fis,+,-323.0,-156.0,-269.0,-128.0,-199.0] [H-NS,-,-415.0,-439.0] [ArgP,+,-244.5,-281.5,-218.5,-190.5,-163.5,-334.5] [DnaA,+,-36.5,-48.0] [NrdR,-,25.5,-7.5] nrdAp
  [ArcA,-,-157.0,-137.0] [MarA,+,-161.0] [SoxS,+,-161.0] [Rob,+,-161.0] [ArcA,-,2.0,13.0,-5.0] [CRP,+,-59.5] [FNR,-,-10.5] aldAp
  [ArgP,+,-49.5,-69.5] [ArgP,+,219.5] dnaAp1
  yjeVp
  [CytR,-,-40.5,-59.0] [CRP,-,-27.5,-80.5] rpoHp4
  [LexA,-,-0.5,-22.5] recNp
  [LexA,-,-24.5] uvrBp3
  [Fis,-,-26.0] [DnaA,+,-40.0,-61.0,-51.0,-73.0] dnaAp2
  [LexA,-,-167.5,-220.5] [LexA,-,-20.5] uvrBp2
  [CRP,+,-117.5] [Fis,-,-11.0,8.0,29.0] [PurR,-,-24.5] guaBp

  

  

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