RegulonDB RegulonDB 11.2:Regulon Page
   

ArcA DNA-binding transcriptional dual regulator

Synonyms: ArcA-phosphorylated, ArcA
Summary:
ArcA is a dual transcriptional regulator for Anoxic redox control [5, 72, 73]. It acts primarily as a negative transcriptional regulator under anaerobic conditions. ArcA represses operons involved in respiratory metabolism, including those that encode products such as the tricarboxylic acid cycle enzymes, enzymes of the glyoxylate shunt, and enzymes of the pathway for fatty acid degradation [73, 74, 75]. In addition, ArcA acts as a repressor for rpoS transcription [64]. ArcA also activates a few operons encoding proteins involved in fermentative metabolism [12, 49]. It has been identified as global repressor of carbon oxidation pathways [62]. Microarray analyses have identified a large number of genes affected by ArcA and have revealed that the Arc system and the FNR regulatory network overlap to a much greater extent than previously estimated [10, 27, 76, 77].
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Transcription factor      
TF conformation(s):
Name Conformation Type TF-Effector Interaction Type Apo/Holo Conformation Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) References
ArcA Non-Functional   Apo [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IPI] S [1], [2], [3], [4]
ArcA-phosphorylated Functional Covalent Holo [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IPI] S [1], [2], [3], [4]
Evolutionary Family: OmpR
TFBs length: 15
Sensing class: External-Two-component systems
Connectivity class: Global Regulator
Gene name: arcA
  Genome position: 4639590-4640306
  Length: 717 bp / 238 aa
Operon name: arcA
TU(s) encoding the TF:
Transcription unit        Promoter
arcA
arcAp1
arcA
arcAp2
arcA
arcAp3
arcA
arcAp4
arcA
arcAp5
arcA
arcAp6
arcA
arcAp7


Regulon       
Regulated gene(s) aceA, aceB, aceE, aceF, aceK, ackA, acnA, acnB, aldA, appA, appB, appC, appX, appY, arcZ, betA, betB, betI, betT, cadA, cadB, caiA, caiB, caiC, caiD, caiE, caiT, citC, citD, citE, citF, citG, citX, cydA, cydB, cydC, cydD, cyoA, cyoB, cyoC, cyoD, cyoE, dctA, dcuC, dpiA, dpiB, fadA, fadB, fadD, fadE, fadH, fadI, fadJ, fadL, fnr, focA, fumA, fumB, fumC, gadA, gadE, gadF, gadX, gatA, gatB,
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Multifun term(s) of regulated gene(s) MultiFun Term (List of genes associated to the multifun term)
membrane (48)
aerobic respiration (33)
anaerobic respiration (31)
electron donors (30)
carbon compounds (24)
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Regulated operon(s) aceBAK, ackA-pta, acnB, aldA, appCBXA, appY, arcZ, betIBA, betT, cadBA, caiTABCDE, citCDEFXG, cydAB, cydDC, cyoABCDE, dctA, dcuB-fumB, dcuC, dpiBA, fadBA, fadD-sroD, fadE, fadH, fadIJ, fadL, fnr, focA-pflB, fumAC, gadAXW, gadEF-mdtEF, gatYZABCD, glcDEFGBA, glpABC, glpD, gltA, grcA, hemA-prfA-prmC, hyaABCDEF, hybOABCDEFG, icd, iraM, lldPRD, mdh, moeAB, ndh, nlpD-rpoS, nuoABCEFGHIJKLMN, ompW, oppABCDF, pdhR-aceEF-lpd, ptsG, puuA-ymjE-puuP, puuDRCBE, rhaT, rmf, rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ, rsd, rutABCDEFG, sdhCDAB-sucABCD-sdhX, sodA, ssb, tpx, treBC, ubiCA, uvrA,
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First gene in the operon(s) aceB, aceE, ackA, acnA, acnB, aldA, appC, appY, arcZ, betI, betT, cadB, caiT, citC, cydA, cydD, cyoA, dctA, dcuC, dpiB, fadB, fadD, fadE, fadH, fadI, fadL, fnr, focA, fumA, fumB, fumC, gadA, gadE, gatY, glcD, glpA, glpD, gltA, grcA, hemA, hyaA, hybO, icd, iraM, lldP, lpd, mdh, moeA, ndh, nuoA, ompW, oppA, ptsG, puuA, puuD, rhaT, rmf, rpoS, rpsJ, rsd, rutA, sdhC, sodA, ssb, sucA,
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Simple and complex regulons AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR
AdiY,ArcA,CRP,FNR,Fis,GadE-RcsB,GadW,GadX,H-NS,RcsB,TorR,ppGpp
AppY,ArcA,Fis,IscR,NarL,NarP,YdeO
AppY,ArcA,YdeO
ArcA
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Simple and complex regulatory phrases Regulatory phrase (List of promoters regulated by the phrase)
[ArcA,-](54)
[ArcA,+](30)


Transcription factor regulation    


Transcription factor binding sites (TFBSs) arrangements
      

  Functional conformation Function Promoter Sigma factor Central Rel-Pos Distance to first Gene Genes Sequence
 LeftPos RightPos Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) References
  ArcA-phosphorylated repressor aceBp Sigma70 nd nd aceB, aceA, aceK
nd
 nd nd [EXP-IMP-REACTION-BLOCKED] W [5]
  ArcA-phosphorylated repressor aceEp1 Sigma70 nd nd aceE, aceF
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [6], [6]
  ArcA-phosphorylated repressor aceEp2 Sigma38 nd nd aceE, aceF
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [6], [6]
  ArcA-phosphorylated activator ackAp Sigma32 nd nd ackA
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [6]
  ArcA-phosphorylated repressor acnAp2 Sigma70 -34.0 -84.0 acnA
aatttgggttGTTATCAAATCGTTAcgcgatgttt
 1335740 1335754 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [7]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -170.0 -266.0 acnB
gaggcggtagTTTAAATTTTGACTAatcttgggat
 131342 131356 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [7]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -143.0 -239.0 acnB
cttgggattcGTTGAGAAAGGTGATtatcaccatg
 131369 131383 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [7]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -139.0 -235.0 acnB
ggattcgttgAGAAAGGTGATTATCaccatgcgaa
 131373 131387 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [7]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -119.0 -215.0 acnB
ttatcaccatGCGAATTAACGAAGTttttacggag
 131393 131407 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP] S [7], [8], [8]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -113.0 -209.0 acnB
ccatgcgaatTAACGAAGTTTTTACggagggaaac
 131399 131413 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [7]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -57.0 -153.0 acnB
gattcagccaCTTTTTTATGTTGCTtttttgtaaa
 131455 131469 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [7]
  ArcA-phosphorylated repressor acnBp1 Sigma70 -48.0 -144.0 acnB
acttttttatGTTGCTTTTTTGTAAacagattaac
 131464 131478 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP] S [7], [8], [8]
  ArcA-phosphorylated repressor aldAp Sigma70 -157.0 -199.0 aldA
aaagtcgctcGTTACGTTAAAAATTgcccgtttgt
 1488026 1488040 [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [9], [9]
  ArcA-phosphorylated repressor aldAp Sigma70 -137.0 -179.0 aldA
aaattgcccgTTTGTGAACCACTTGtttgcaaacg
 1488046 1488060 [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [9], [9]
  ArcA-phosphorylated repressor aldAp Sigma70 -5.0 -47.0 aldA
gatgattgatGTTAATTAACAATGTattcaccgaa
 1488178 1488192 [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] C [8], [8], [9], [9], [10]
  ArcA-phosphorylated repressor aldAp Sigma70 2.0 -41.0 aldA
tgatgttaatTAACAATGTATTCACcgaaaacaaa
 1488184 1488198 [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [9], [9], [10]
  ArcA-phosphorylated repressor aldAp Sigma70 13.0 -30.0 aldA
aacaatgtatTCACCGAAAACAAACatataaatca
 1488195 1488209 [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION] C [9], [9], [10]
  ArcA-phosphorylated activator appCp Sigma70 nd nd appC, appB, appX, appA
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [11]
  ArcA-phosphorylated activator appCp2 Sigma38 nd nd appC, appB, appX, appA
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [11]
  ArcA-phosphorylated activator appYp2 Sigma38 -197.0 -222.0 appY
agtgagtttaTGTTAATAAAAagcatagtaa
 583454 583464 [COMP-AINF-SIMILAR-TO-CONSENSUS] W [12], [12]
  ArcA-phosphorylated repressor arcZp nd -29.0 -29.0 arcZ
aactgattcaTGTAACAAATCATTTaagttttgct
 3350541 3350555 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [13], [13]
  ArcA-phosphorylated repressor betIp Sigma70 -74.0 -101.0 betI, betB, betA
cactgttattGTTACTATTTAAAATcaaattcgta
 329428 329442 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-GSELEX], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] S [14], [15], [16]
  ArcA-phosphorylated repressor betIp Sigma70 -6.0 -33.0 betI, betB, betA
tcaataaccgCTTTAATAGATAAACaccgctgatg
 329360 329374 [EXP-GSELEX], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] W [12], [14], [15], [16]
  ArcA-phosphorylated repressor betTp Sigma70 3.0 -40.0 betT
tgtcttaattGTTACGAATTTGATTttaaatagta
 329416 329430 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-GSELEX], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] S [12], [14], [15], [16]
  ArcA-phosphorylated repressor betTp Sigma70 15.0 -28.0 betT
tacgaatttgATTTTAAATAGTAACaataacagtg
 329428 329442 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-GSELEX], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] S [14], [15], [15], [16]
  ArcA-phosphorylated repressor cadBp Sigma70 -179.0 -254.0 cadB, cadA
ataatttttaTTACATAAATTTAACcagagaatgt
 4360278 4360292 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated activator caiTp Sigma70 -101.0 -207.0 caiT, caiA, caiB, caiC, caiD, caiE
cagagcataaCAAACTGATTATTAAtcaaaattaa
 42131 42145 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated activator caiTp Sigma70 -91.0 -197.0 caiT, caiA, caiB, caiC, caiD, caiE
caaactgattATTAATCAAAATTAAcgaaaaaacg
 42121 42135 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated activator caiTp Sigma70 28.0 -79.0 caiT, caiA, caiB, caiC, caiD, caiE
cgtccacgagGTTAATAATAATTATattaaatgtt
 42003 42017 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated activator caiTp Sigma70 50.0 -57.0 caiT, caiA, caiB, caiC, caiD, caiE
tatattaaatGTTAACAAAAATAAAacaaacggga
 41981 41995 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated repressor citCp1 nd 64.5 -32.5 citC, citD, citE, citF, citX, citG
attcgttgcaAATCGATAACAacatgcacct
 651884 651894 [COMP-AINF-SIMILAR-TO-CONSENSUS] W [17], [17]
  ArcA-phosphorylated activator cydAp1 Sigma70 -315.0 -603.0 cydA, cydB
ccctgggtgaGTTAATTATAATATAattataagtt
 770848 770862 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [18], [19], [20], [21]
  ArcA-phosphorylated activator cydAp1 Sigma70 -304.0 -592.0 cydA, cydB
ttaattataaTATAATTATAAGTTAactaaatgtt
 770859 770873 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [18], [19], [20], [21]
  ArcA-phosphorylated activator cydAp1 Sigma70 -293.0 -581.0 cydA, cydB
ataattataaGTTAACTAAATGTTAatattggcgg
 770870 770884 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [10], [10], [12], [18], [19], [20], [21], [22], [23]
  ArcA-phosphorylated activator cydAp1 Sigma70 -84.0 -372.0 cydA, cydB
aagttaccttATTGAAACATGATTAacataatttg
 771079 771093 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] S [10], [10], [12], [18], [19], [20], [21], [22], [23]
  ArcA-phosphorylated activator cydAp1 Sigma70 135.0 -154.0 cydA, cydB
ggatcaatttGAGTTTTTATTAACAtgtttgcaac
 771297 771311 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [18], [19], [20], [21], [21]
  ArcA-phosphorylated activator cydAp2 Sigma70 -77.5 -251.5 cydA, cydB
cggtaatttaGCTATAAATTGATCAccgtcgaaaa
 771199 771213 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [12], [18], [19], [20]
  ArcA-phosphorylated activator cydAp3 Sigma70 nd nd cydA, cydB
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [18], [19], [20], [24], [25]
  ArcA-phosphorylated activator cydAp4 Sigma70 nd nd cydA, cydB
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [18], [19], [20], [24], [25]
  ArcA-phosphorylated activator cydDp Sigma70 -44.0 -113.0 cydD, cydC
gcaaaataatTTTACAAATCAGTAACaaaagtaaag
 931068 931083 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ] S [8], [8], [19], [26]
  ArcA-phosphorylated repressor cyoAp Sigma70 -200.0 -243.0 cyoA, cyoB, cyoC, cyoD, cyoE
ataattatttGTTAAATAATTGTTTtatttcacat
 451846 451860 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ], [EXP-GSELEX], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] S [8], [8], [12], [14], [16], [22], [26], [27], [28]
  ArcA-phosphorylated repressor dctAp Sigma70 nd nd dctA
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [29]
  ArcA-phosphorylated activator dcuCp nd -340.0 -455.0 dcuC
gcttgttcaaGTTAAATATTTCCGCgcatcgatta
 656416 656430 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [30]
  ArcA-phosphorylated activator dpiBp1 nd -95.5 -346.5 dpiB, dpiA
aggtgcatgtTGTTATCGATTtgcaacgaat
 651884 651894 [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [17], [17]
  ArcA-phosphorylated repressor fadBp Sigma70 -29.0 -71.0 fadB, fadA
aatcttttgtTTGCATATTTTTAACacaaaataca
 4031035 4031049 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [10], [10], [28], [31], [31]
  ArcA-phosphorylated repressor fadDp Sigma70 -7.0 -68.0 fadD, sroD
ggtatgatgaGTTAATATTATGTTAacggcatgta
 1889807 1889821 [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [8], [31], [31]
  ArcA-phosphorylated repressor fadEp nd 15.0 -89.0 fadE
gctttgttgtAATTATATTGTAAACatattgctaa
 243385 243399 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [8], [14], [16], [31], [31]
  ArcA-phosphorylated repressor fadHp nd 19.0 -23.0 fadH
tccgaccacaTAACAATTATTTTACatactggaca
 3231635 3231649 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP] S [8], [8], [31], [31], [32], [32]
  ArcA-phosphorylated repressor fadIp Sigma70 -17.0 -59.0 fadI, fadJ
ttggctaaatGTAAAAAAATGGTTAagactatgat
 2460521 2460535 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [31], [31]
  ArcA-phosphorylated repressor fadLp Sigma38 -38.0 -139.0 fadL
aaaaagatagAAACATACTTGCAACattccagctg
 2461160 2461174 [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [31]
  ArcA-phosphorylated repressor fnrp Sigma70 nd nd fnr
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [6]
  ArcA-phosphorylated activator focAp1 Sigma70 -251.0 -278.0 focA, pflB
tataaggttaAATATCGGTAATTTGtatttaataa
 954737 954751 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP] S [6], [8], [8], [33], [34], [35], [36], [37]
  ArcA-phosphorylated activator focAp1 Sigma70 -114.0 -141.0 focA, pflB
tttatttttaTTTGGATAATCAAATatttactccg
 954600 954614 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [8], [33], [34], [34], [35], [35], [36], [36], [37], [37]
  ArcA-phosphorylated activator focAp1 Sigma70 -6.0 -33.0 focA, pflB
ataatgctttGTTAGTATCTCGTCGccgacttaat
 954492 954506 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [6], [33], [34], [35], [36], [37]
  ArcA-phosphorylated activator focAp2 Sigma70 5.0 -33.0 focA, pflB
ataatgctttGTTAGTATCTCGTCGccgacttaat
 954492 954506 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [6], [33], [34], [35], [36], [37]
  ArcA-phosphorylated repressor fumAp Sigma70 nd nd fumA, fumC
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [28], [38]
  ArcA-phosphorylated activator fumBp Sigma70 nd nd fumB
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [39]
  ArcA-phosphorylated repressor fumCp2 Sigma38 nd nd fumC
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [38]
  ArcA-phosphorylated activator gadAp Sigma70 nd nd gadA, gadX
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated activator gadAp2 Sigma38 nd nd gadA, gadX
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated activator gadEp1 Sigma38 nd nd gadE, gadF
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [40], [40]
  ArcA-phosphorylated activator gadEp3 Sigma70 nd nd gadE, gadF
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [40], [40]
  ArcA-phosphorylated repressor gatYp Sigma70 nd nd gatY, gatZ, gatA, gatB, gatC, gatD
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated repressor glcDp Sigma70 -111.0 -166.0 glcD, glcE, glcF, glcG, glcB, glcA
aagtgattatGTTACATCAATTTAAcattgagtta
 3128180 3128194 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [26], [41]
  ArcA-phosphorylated repressor glcDp Sigma70 -104.0 -159.0 glcD, glcE, glcF, glcG, glcB, glcA
tatgttacatCAATTTAACATTGAGttaaccaaga
 3128173 3128187 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [10], [10], [26], [41]
  ArcA-phosphorylated repressor glpABCp Sigma70 nd nd glpA, glpB, glpC
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [42]
  ArcA-phosphorylated repressor glpDp Sigma70 nd nd glpD
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [42]
  ArcA-phosphorylated repressor gltAp1 Sigma70 -47.0 -346.0 gltA
tgacaatcatTCAACAAAGTTGTTAcaaacattac
 754807 754821 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] S [8], [8], [12], [12], [19], [27], [43], [43], [44], [44]
  ArcA-phosphorylated activator grcAp1 Sigma70 -99.0 -173.0 grcA
ttcacacccgCATAAGTTGATGTAAaacaataaaa
 2716615 2716629 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [45], [45]
  ArcA-phosphorylated activator grcAp1 Sigma70 -82.0 -156.0 grcA
tgatgtaaaaCAATAAAATCCATTTgcgaccatac
 2716598 2716612 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [45], [45]
  ArcA-phosphorylated activator hemAp1 Sigma70 nd nd hemA, prfA, prmC
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [46], [47]
  ArcA-phosphorylated activator hyaAp Sigma70 -67.0 -222.0 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
aaaaataggtCCATTTTTATCGCTAaaagataaat
 1031910 1031924 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [48], [48], [49]
  ArcA-phosphorylated activator hyaAp Sigma70 -7.5 -162.5 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
gtgcaaaagtTTCACTACGCTTTATTAACAATActttctggcg
 1031966 1031988 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [50], [50]
  ArcA-phosphorylated activator hyaAp2 Sigma38 -67.0 -222.0 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
aaaaataggtCCATTTTTATCGCTAaaagataaat
 1031910 1031924 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [48], [48], [49]
  ArcA-phosphorylated activator hyaAp2 Sigma38 -7.5 -162.5 hyaA, hyaB, hyaC, hyaD, hyaE, hyaF
gtgcaaaagtTTCACTACGCTTTATTAACAATActttctggcg
 1031966 1031988 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [50], [50]
  ArcA-phosphorylated repressor hybOp1 Sigma70 -57.0 -159.0 hybO, hybA, hybB, hybC, hybD, hybE, hybF, hybG
attatcttgcTTTAATTAATTACACtaatgcttct
 3146413 3146427 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [48], [48]
  ArcA-phosphorylated repressor icdAp1 Sigma70 -3.0 -118.0 icd
caatagggtaGTATTGACAAGCCAATtacaaatcat
 1194998 1195013 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [19], [27], [51], [51], [52], [52]
  ArcA-phosphorylated repressor icdAp1 Sigma70 16.0 -100.0 icd
aagccaattaCAAATCATTAACAAAAaattgctcta
 1195016 1195031 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [8], [19], [27], [51], [51], [52], [52]
  ArcA-phosphorylated activator iraMp1 nd -170.5 -257.5 iraM
ataaaggctaTGTTTTAATTACAGGatgttcagtc
 1212253 1212267 [COMP-AINF-SIMILAR-TO-CONSENSUS] W [53], [53]
  ArcA-phosphorylated activator iraMp1 nd -16.5 -103.5 iraM
tataagccatCATTTTAATTAATTTatttttttga
 1212099 1212113 [COMP-AINF-SIMILAR-TO-CONSENSUS] W [53], [53]
  ArcA-phosphorylated repressor lldPp Sigma70 -18.0 -128.0 lldP, lldR, lldD
gttgccaataCATAACATTTAGTTAaccattcatt
 3777264 3777278 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [10], [10], [12], [12], [18]
  ArcA-phosphorylated repressor lldPp Sigma70 10.0 -101.0 lldP, lldR, lldD
cattcattgtCATTATCCCTACACAacacaattgg
 3777291 3777305 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [10], [12], [18]
  ArcA-phosphorylated repressor lpdAp Sigma70 -27.0 -222.0 lpd
cgtttgttgtTTAAAAATTGTTAACaattttgtaa
 127683 127697 [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP] S [8], [8], [10]
  ArcA-phosphorylated repressor lpdAp Sigma70 -18.0 -213.0 lpd
tttaaaaattGTTAACAATTTTGTAaaataccgac
 127692 127706 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [8], [10], [27], [54], [55], [56]
  ArcA-phosphorylated repressor mdhp1 Sigma70 27.0 -19.0 mdh
catatcttagTTTATCAATATAATAaggagtttag
 3384280 3384294 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] W [12], [27], [43], [57]
  ArcA-phosphorylated activator moeAp Sigma70 -137.0 -167.0 moeA, moeB
tggttcgccaCTTTTGCTATAAATAtcagaatttt
 866524 866538 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [58], [58]
  ArcA-phosphorylated repressor ndhp Sigma70 -57.0 -150.0 ndh
cttttcagcaACAAAACTTGATTAAcatcaatttt
 1165928 1165942 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [59]
  ArcA-phosphorylated repressor ndhp Sigma70 36.0 -58.0 ndh
gtaacctgttGTTAATTAAGAGCTAtgttaataac
 1166020 1166034 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [59]
  ArcA-phosphorylated repressor ndhp Sigma70 52.0 -42.0 ndh
taagagctatGTTAATAACCATTAAttaacaattg
 1166036 1166050 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [59]
  ArcA-phosphorylated repressor ndhp Sigma70 57.0 -37.0 ndh
gctatgttaaTAACCATTAATTAACaattggttaa
 1166041 1166055 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [59]
  ArcA-phosphorylated repressor ndhp Sigma70 66.0 -28.0 ndh
ataaccattaATTAACAATTGGTTAataaatttaa
 1166050 1166064 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [59]
  ArcA-phosphorylated repressor ndhp Sigma70 68.0 -26.0 ndh
aaccattaatTAACAATTGGTTAATaaatttaagg
 1166052 1166066 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10], [59]
  ArcA-phosphorylated repressor nuoAp2 Sigma70 -108.0 -198.0 nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN
tgctaatggtGTTGATATTATGTAAactaatgtga
 2405263 2405277 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IMP-SITE-MUTATION] S [12], [19], [27], [60]
  ArcA-phosphorylated repressor ompWp nd 1.5 -28.5 ompW
tgtaggtataTTCGTCACGTTTTTATAACcataacgacg
 1313983 1314001 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [61], [61], [62]
  ArcA-phosphorylated repressor oppAp Sigma28 nd nd oppA, oppB, oppC, oppD, oppF
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated repressor ptsGp1 nd -85.0 -188.0 ptsG
tgtgacatatGTTTTGTCAAAATGTgcaacttctc
 1157674 1157688 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [63], [63]
  ArcA-phosphorylated repressor ptsGp1 nd -48.0 -151.0 ptsG
atgatctgaaGTTGAAACGTGATAGccgtcaaaca
 1157711 1157725 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [63], [63]
  ArcA-phosphorylated repressor ptsGp1 nd 2.0 -102.0 ptsG
tattttactcTGTGTAATAAATAAAgggcgcttag
 1157760 1157774 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [63], [63]
  ArcA-phosphorylated repressor puuAp Sigma38 -165.0 -225.0 puuA, ymjE, puuP
cgataaccggATTGTTCATTATATTttccatgctc
 1361126 1361140 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [53], [53]
  ArcA-phosphorylated repressor puuDp Sigma38 82.0 14.0 puuD, puuR, puuC, puuB, puuE
gagcatggaaAATATAATGAACAATccggttatcg
 1361126 1361140 [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [53], [53]
  ArcA-phosphorylated repressor rhaTp Sigma70 -184.0 -225.0 rhaT
gtaagcagttGGTTCATTATAGTTAattaaatgat
 4100743 4100757 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated repressor rhaTp Sigma70 -173.0 -214.0 rhaT
gttcattataGTTAATTAAATGATAttgaaaatga
 4100732 4100746 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated repressor rhaTp Sigma70 -156.0 -197.0 rhaT
aaatgatattGAAAATGATTATCAAtgccgtactt
 4100715 4100729 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated repressor rmfp nd nd nd rmf
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [16], [16]
  ArcA-phosphorylated repressor rpoSp Sigma70 -64.0 -631.0 rpoS
agagcaaggaGTTGTGATCAAGCCTgcacaaaatt
 2868175 2868189 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [64], [64]
  ArcA-phosphorylated repressor rpoSp Sigma70 24.0 -544.0 rpoS
tgaacagagtGCTAACAAAATGTTGccgaacaaca
 2868088 2868102 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [64], [64]
  ArcA-phosphorylated repressor rpsJp Sigma70 nd nd rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV, rpsC, rplP, rpmC, rpsQ
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated repressor rsdp2 Sigma70 nd nd rsd
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-GSELEX], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [16], [16]
  ArcA-phosphorylated activator rutAp Sigma54 -97.0 -112.0 rutA, rutB, rutC, rutD, rutE, rutF, rutG
ctgttttgacCGTTTAGTCCACTTTttaccagata
 1074116 1074130 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated activator sdhCp Sigma70 -211.0 -430.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
tgttacataaGTTAATCTTAGGTGAaataccgact
 754740 754754 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [65]
  ArcA-phosphorylated activator sdhCp Sigma70 -137.0 -356.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
ttgtaacaacTTTGTTGAATGATTGtcaaattaga
 754814 754828 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [65]
  ArcA-phosphorylated repressor sdhCp Sigma70 -32.0 -251.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
atgtaggttaATTGTAATGATTTTGtgaacagcct
 754919 754933 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [5], [12]
  ArcA-phosphorylated repressor sdhCp Sigma70 -27.0 -246.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
ggttaattgtAATGATTTTGTGAACagcctatact
 754924 754938 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [5], [56], [65], [66]
  ArcA-phosphorylated repressor sdhCp Sigma70 257.0 38.0 sdhC, sdhD, sdhA, sdhB, sucA, sucB, sucC, sucD, sdhX
acaaagacctGTTAATCTGGACCTAcagaccatcc
 755207 755221 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [65]
  ArcA-phosphorylated repressor sodAp Sigma70 -38.0 -89.0 sodA
aaagtacggcATTGATAATCATTTTcaatatcatt
 4100714 4100728 [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] W [10], [67], [67]
  ArcA-phosphorylated repressor sodAp Sigma70 -21.0 -72.0 sodA
atcattttcaATATCATTTAATTAActataatgaa
 4100731 4100745 [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] W [10], [67], [67]
  ArcA-phosphorylated repressor sodAp Sigma70 -10.0 -61.0 sodA
tatcatttaaTTAACTATAATGAACcaactgctta
 4100742 4100756 [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] W [67], [67]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -153.5 -186.5 ssb
ggcgatcacaAACGGTTAATTATGAcacaaattga
 4273931 4273945 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -90.5 -123.5 ssb
attacccggaGTGTTGTGTAACAATgtctggccag
 4273994 4274008 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -50.5 -83.5 ssb
tttcccggaaCCGAGGTCACAACATagtaaaagcg
 4274034 4274048 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp1 Sigma70 -7.5 -40.5 ssb
aatggtacaaTCGCGCGTTTACACTtattcagaac
 4274077 4274091 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp2 Sigma70 -141.5 -186.5 ssb
ggcgatcacaAACGGTTAATTATGAcacaaattga
 4273931 4273945 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp2 Sigma70 -78.5 -123.5 ssb
attacccggaGTGTTGTGTAACAATgtctggccag
 4273994 4274008 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp2 Sigma70 -38.5 -83.5 ssb
tttcccggaaCCGAGGTCACAACATagtaaaagcg
 4274034 4274048 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp2 Sigma70 5.5 -40.5 ssb
aatggtacaaTCGCGCGTTTACACTtattcagaac
 4274077 4274091 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp3 Sigma70 -72.5 -186.5 ssb
ggcgatcacaAACGGTTAATTATGAcacaaattga
 4273931 4273945 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp3 Sigma70 -9.5 -123.5 ssb
attacccggaGTGTTGTGTAACAATgtctggccag
 4273994 4274008 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp3 Sigma70 31.5 -83.5 ssb
tttcccggaaCCGAGGTCACAACATagtaaaagcg
 4274034 4274048 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor ssbp3 Sigma70 74.5 -40.5 ssb
aatggtacaaTCGCGCGTTTACACTtattcagaac
 4274077 4274091 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor sucAp Sigma38 nd nd sucA, sucB, sucC, sucD, sdhX
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [12], [28], [69]
  ArcA-phosphorylated repressor tpxp Sigma70 -22.0 -55.0 tpx
cgtttgctgtGTTATTGACAGTTAGcataaactag
 1388859 1388873 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS] W [70]
  ArcA-phosphorylated activator treBp Sigma70 -237.0 -267.0 treB, treC
ggcgagcgtcGGTAATACGCCGTTAatgaaattcc
 4466440 4466454 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]
  ArcA-phosphorylated repressor ubiCp Sigma70 nd nd ubiC, ubiA
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS] W [71]
  ArcA-phosphorylated repressor uvrAp Sigma70 -148.5 -213.5 uvrA
gttctgaataAGTGTAAACGCGCGAttgtaccatt
 4274077 4274091 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor uvrAp Sigma70 -105.5 -170.5 uvrA
cgcttttactATGTTGTGACCTCGGttccgggaaa
 4274034 4274048 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor uvrAp Sigma70 -65.5 -130.5 uvrA
ctggccagacATTGTTACACAACACtccgggtaat
 4273994 4274008 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated repressor uvrAp Sigma70 -2.5 -67.5 uvrA
tcaatttgtgTCATAATTAACCGTTtgtgatcgcc
 4273931 4273945 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] S [68], [68]
  ArcA-phosphorylated activator xylRp nd nd nd xylR
nd
 nd nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [27], [27]
  ArcA-phosphorylated activator ybdNp Sigma70 64.5 -53.5 ybdN
acagtgtttaCTTTATAATTAACAGacttatctca
 636615 636629 [COMP-AINF-SIMILAR-TO-CONSENSUS] W [53], [53]
  ArcA-phosphorylated repressor ydeAp nd 16.0 -58.0 ydeA
aatgcattgtATTCACATCATTAACcgttttaaga
 1616963 1616977 [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS] W [10], [10]



High-throughput Transcription factor binding sites (TFBSs)
      

  Functional conformation Function Object name Object type Distance to first Gene Sequence LeftPos RightPos Center Position Growth Condition Evidence Confidence level (C: Confirmed, S: Strong, W: Weak) References
  ArcA-phosphorylated activator ybfA Gene nd
aaaagccatgATTTAACTAATGTTTAgtattaattt
728937 728952 728944.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator manA Gene nd
aacaatatccTACACACTTTTTTAACaaaaactgag
1688458 1688473 1688465.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dcuA Gene nd
cttccttgttTTTTAACAAGTTGATAttagattgtt
4366790 4366805 4366797.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pntA Gene nd
gaatcactacTTAACATTAAATTAACttatacaatt
1678202 1678217 1678209.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pldA Gene nd
acacttcattGGTTAATGAAATGTTGattttatgct
4004717 4004732 4004724.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator arcA Gene nd
aattgtagcaCGTTAACAGTTTGATGaaatcatcgt
4640612 4640627 4640619.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pyrS Gene nd
agaaaattacCACTCATTTTATTAACataataattt
2498479 2498494 2498486.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator oppA Gene nd
agagaattgcTTAACAATTTTGCAAAatgtattggc
1300858 1300873 1300865.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dcuB Gene nd
actgcgcagaTGTTAATGTTTTGTTTgctgttatct
4348986 4349001 4348993.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator argR Gene nd
agccaaaacaACATCAATTTGATAACaattaattta
3384506 3384521 3384513.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator cydA Gene nd
agccttataaCTCACACATTTTAAACataaatgtca
771040 771055 771047.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pldA Gene nd
atattcacctTATCAATAATTCGTTAcggagaacac
4004831 4004846 4004838.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator nupC Gene nd
attcaactgcTTGTTATCGAAGTGTTactggcgtgg
2513151 2513166 2513158.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dppA Gene nd
acctacaatcTGTCAACAGAATGTGAaaacgtcaat
3707882 3707897 3707889.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator igaA Gene nd
attgcatgttATTTACATTTATGTAActtaataaat
3526225 3526240 3526232.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator argR Gene nd
catcaatttgATAACAATTAATTTACttttaagcag
3384517 3384532 3384524.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pncB Gene nd
cgcggtgtatGTTATAAAAATGTAGcaataaaggc
990501 990515 990508.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dcuB Gene nd
aagttggataGTAAATAACATGTGTGaaccctcgcg
4348734 4348749 4348741.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pntA Gene nd
tcggcgtgaaCTCGCAAAATATTAACgattcagccg
1678079 1678094 1678086.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator carA Gene nd
cttctgttttTGTTGTTTTAATGTAAattttgacca
29340 29355 29347.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dcuB Gene nd
ttttgtttgcTGTTATCTTATTGATAtttatcggtc
4349004 4349019 4349011.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator yfiF Transcription-Unit nd
cgataatatgTAACATATTAGAAACAtaccggcgtc
2718671 2718686 2718678.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator gcvB Gene nd
gatcacactaTGTAACCTATTAGTTTttttaatctg
2942616 2942631 2942623.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator arcA Gene nd
ctagttgcatCATACAACTAATAAACgtggtgaatc
4640689 4640704 4640696.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator cydA Gene nd
gattttgcggCGTAATATATACGTGGgatcaatttg
771272 771287 771279.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator nupC Gene nd
gcaaaaaaatTCGTATCCGTTATGTTattcaactgc
2513125 2513140 2513132.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator rstA Gene nd
gcagctttatCCAGCATATAATCAACacccatgcgc
1681710 1681725 1681717.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator ybfA Gene nd
gcgggcggggTGTAAAAAAAGTATAAaaatggcaaa
728904 728919 728911.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator igaA Gene nd
ggcaatgtgaATTGCATGTTATTTACatttatgtaa
3526215 3526230 3526222.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dsbB Transcription-Unit nd
ccggtaagttGTTATCAAAGCGTTGCtatccagccc
1233172 1233187 1233179.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator rho Gene nd
gtgagtcatgCTAACTTAGTGTTGACttcgtattaa
3966149 3966164 3966156.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator yhgE Transcription-Unit nd
cccgccatatAAACCAAGATTTAACCttttgagaac
3532612 3532627 3532619.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator pyrS Gene nd
taacataataATTTCAATAAATTTACtaaccagaag
2498501 2498516 2498508.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator sstT Gene nd
tactcgacctTGCAAACACTTTGTTAcatcctgaaa
3239862 3239877 3239869.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator ybfA Gene nd
tagtattaatTTAACTTTTGTGTAACttaattacag
728961 728976 728968.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator cydA Gene nd
tcacacatttTAAACATAAATGTCACtaaagttacc
771051 771066 771058.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator oppA Gene nd
tccctaaataATAATCAATTGTTAAAttattgtgca
1300701 1300716 1300708.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-GSELEX] S [8]
  ArcA-phosphorylated activator rstA Gene nd
tctttttaccTTAACACTTCCATAACaagtcatcag
1682040 1682055 1682047.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator cydA Gene nd
tgagtttttaTTAACATGTTTGCAACctttctttac
771306 771321 771313.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator acpP Gene nd
tgcaaattttTCAACATTTTATACACtacgaaaacc
1151553 1151568 1151560.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator cydA Gene nd
tgtcactaaaGTTACCTTATTGAAACatgattaaca
771071 771086 771078.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator gcvB Gene nd
ttaaatgaatTTAACAATTAGATCACactatgtaac
2942596 2942611 2942603.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator micF Gene nd
ttcgcgaagtTTTAACAGGTCATAAAcacgaatgcg
2313467 2313482 2313474.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator dcuA Gene nd
gatattagatTGTTATTTTTAAGTTActgctcacaa
4366812 4366827 4366819.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator micF Gene nd
ttgttaactaTTTCACAAATAATTAAcatccgcata
2313242 2313257 2313249.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ] S [8]
  ArcA-phosphorylated activator pyrS Gene nd
tttatctgcgCTAACAAGAAAATTACcactcatttt
2498463 2498478 2498470.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated activator sstT Gene nd
tttatttttaTGTCAAAGAAATGTAAccattaagtt
3239763 3239778 3239770.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor ybiU Gene nd
tgacaatataAGTTATAAATAAGTTAatgcaagttt
859118 859133 859125.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor kdpA Gene nd
aaaagccatgATTTAACTAATGTTTAgtattaattt
728937 728952 728944.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yejG Gene nd
tacatcaattTTAACACATCATCAACaatccgtctt
2278286 2278301 2278293.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ] S [8]
  ArcA-phosphorylated repressor putA Gene nd
taaaatttaaTGTAAATGGTGTGTTAaatcgattgt
1079154 1079169 1079161.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor cycA Gene nd
acactcacttTAAACATAAAATTAACattagatcta
4429711 4429726 4429718.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yeiQ Gene nd
acactgtcgtTGTTAATTAATCGTTActaagacgtg
2266213 2266228 2266220.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yncE Gene nd
acgccgtcatGGTAATGAAATTGTAAatttatggaa
1523103 1523118 1523110.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yncD Gene nd
cggcacaataCGTTAAGTAATTGAGAaaattgtagt
1523146 1523161 1523153.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor ndk Transcription-Unit nd
ttgatgaaggTAACATTTTTTTAAAAtaaaatgagt
2644960 2644975 2644967.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor cyoA Gene nd
taaaacaattATTTAACAAATAATTAtcattagagt
451854 451869 451861.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ], [EXP-GSELEX] S [8]
  ArcA-phosphorylated repressor msrB Gene nd
taagttgctgAATCGTTTTTTCAACCgttgatttct
1862006 1862021 1862013.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yigI Gene nd
acacttcattGGTTAATGAAATGTTGattttatgct
4004717 4004732 4004724.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor sthA Gene nd
caaccgccgcCAACATTTTGATAACGctcgataact
4160667 4160682 4160674.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yhjE Transcription-Unit nd
atccagttggTAACTTTTATTTAACCtgaaaccagt
3674585 3674600 3674592.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor feoA Gene nd
attaacaactGAAACCTTAATTAAACattagccagt
3539889 3539904 3539896.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor mqo Transcription-Unit nd
gcatcaacggTAACACTTAAGTAACAacatttaaat
2306815 2306830 2306822.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor nudE Gene nd
attgcatgttATTTACATTTATGTAActtaataaat
3526225 3526240 3526232.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor focA Gene nd
taaccttataATTACAATTATTTTATtaatgcaaat
954762 954777 954769.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor kgtP Transcription-Unit nd
tattttttttGTAAAGGAAATATTATacatttgttg
2725807 2725822 2725814.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yieE Gene nd
cacaataaaaTGTAAAAAAGTTGTAAtaagcttgtc
3893763 3893778 3893770.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor glpD Gene nd
cactctaaaaTGTTTTTTCAATGTTAcctaaagcgc
3561922 3561937 3561929.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor ynaJ Transcription-Unit nd
catggtattgTTACGTTTAGGTAACAagaaatttgt
1397321 1397336 1397328.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yejG Gene nd
ataaattgatTTTACATAAAATAAACatatatcggg
2278475 2278490 2278482.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor feoA Gene nd
ccggcaatatTTATCATTTCATTAACaactgaaacc
3539869 3539884 3539876.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor xthA Gene nd
cgacctctacAGTAAATAATTCGTTAtttatatgtt
1831995 1832010 1832002.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor pepN Gene nd
cgcggtgtatGTTATAAAAATGTAGcaataaaggc
990501 990515 990508.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yncE Gene nd
cggcacaataCGTTAAGTAATTGAGAaaattgtagt
1523146 1523161 1523153.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor folE Gene nd
catcagcagaTGTTAAAACATCGTTAtgcaaatacg
2243807 2243822 2243814.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor glaH Gene nd
ctacgttaaaTGTTACTAATTTGTTGcttttgatca
2788839 2788854 2788846.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor msrB Gene nd
aattttacagGCAACCTTTTATTCACtaacaaatag
1862733 1862748 1862740.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor fumA Gene nd
aacaatatccTACACACTTTTTTAACaaaaactgag
1688458 1688473 1688465.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor ydgC Gene nd
tctttttaccTTAACACTTCCATAACaagtcatcag
1682040 1682055 1682047.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor mdh Gene nd
catcaatttgATAACAATTAATTTACttttaagcag
3384517 3384532 3384524.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor kdpA Gene nd
tagtattaatTTAACTTTTGTGTAACttaattacag
728961 728976 728968.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor argT Gene nd
acgttaaataTGTTAATAAGACGTTGcattattgtc
2427910 2427925 2427917.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ] S [8]
  ArcA-phosphorylated repressor focA Gene nd
atcctccgctAAAACAGTTAATTAAAagggagcatc
954671 954686 954678.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yjiR Gene nd
cctgtctgtaTGTTAAATAAAAGTAAtatttgaatc
4571666 4571681 4571673.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor potF Gene nd
gcaaatatgcATAAAAATTTGTTAAAtaccgttttt
893568 893583 893575.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor msrB Gene nd
gtgactgattCTAACAAAACATTAACaccaactggc
1862475 1862490 1862482.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor thrA Gene nd
gccgtgagtaAATTAAAATTTTATTGacttaggtca
98 113 105.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor sthA Gene nd
atacataaaaGCAACAGAATGGTAACattttatcgc
4160821 4160836 4160828.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor ydgC Gene nd
gcagctttatCCAGCATATAATCAACacccatgcgc
1681710 1681725 1681717.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor glpE Gene nd
cactctaaaaTGTTTTTTCAATGTTAcctaaagcgc
3561922 3561937 3561929.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor tpx Gene nd
ttatctttccTGTTTACATATAGTTAacgtcacacc
1388824 1388839 1388831.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor phoH Gene nd
ggtgttttatAGTTAAATATAAGTAAatatattgtt
1084883 1084898 1084890.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor xthA Gene nd
gtaaataattCGTTATTTATATGTTAataataagta
1832006 1832021 1832013.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yigI Gene nd
atattcacctTATCAATAATTCGTTAcggagaacac
4004831 4004846 4004838.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor phoH Gene nd
gttaaatataAGTAAATATATTGTTGcaataaatgc
1084894 1084909 1084901.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yeiQ Gene nd
gttaattaatCGTTACTAAGACGTGActcctatgaa
2266224 2266239 2266231.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor xthA Gene nd
gttatttataTGTTAATAATAAGTAAtgtttgcgct
1832017 1832032 1832024.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor glaH Gene nd
gttgcttttgATCACAATAAGAAAACaatatgtcgc
2788861 2788876 2788868.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor puuD Gene nd
gttttccgctCGTTATCAAAGCGTAAaatataatga
1360938 1360953 1360945.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor focA Gene nd
ttaccgatatTTAACCTTATAATTACaattatttta
954751 954766 954758.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yejG Gene nd
gcacattcacTTCACAATTTGTTTACatcaatttta
2278263 2278278 2278270.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ] S [8]
  ArcA-phosphorylated repressor putP Gene nd
taaaatttaaTGTAAATGGTGTGTTAaatcgattgt
1079154 1079169 1079161.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor mdh Gene nd
agccaaaacaACATCAATTTGATAACaattaattta
3384506 3384521 3384513.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor glcC Gene nd
taactcaatgTTAAATTGATGTAACataatcactt
3128180 3128194 3128187.0 nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8]
  ArcA-phosphorylated repressor fadE Gene nd
gtaaaaacatTTAGCAATATGTTTACaatataatta
243375 243390 243382.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP], [EXP-GSELEX] S [8]
  ArcA-phosphorylated repressor osmY Gene nd
tatcccgagcGGTTTCAAAATTGTGAtctatattta
4611122 4611137 4611129.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor aldA Gene nd
tcaccgaaaaCAAACATATAAATCACaggagtcgcc
1488205 1488220 1488212.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor puuA Gene nd
gttttccgctCGTTATCAAAGCGTAAaatataatga
1360938 1360953 1360945.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor thiC Gene nd
gggcattgaaTGTAAATTACGCGTTAacagcgcaga
4196304 4196319 4196311.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor potF Gene nd
tctgctgtttTTAACCTTTTCTTAAAgattatttca
893498 893513 893505.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor glcC Gene nd
tcttggttaaCTCAATGTTAAATTGatgtaacata
3128173 3128187 3128180.0 nd [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-CHIP], [EXP-DAP-SEQ], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] C [8], [10]
  ArcA-phosphorylated repressor osmY Gene nd
tgatctatatTTAACAAAGTGATGACatttctgacg
4611145 4611160 4611152.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor cyoA Gene nd
tttacgggaaGGTTACATTACTGTAAacatgattaa
451672 451687 451679.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor nudE Gene nd
ggcaatgtgaATTGCATGTTATTTACatttatgtaa
3526215 3526230 3526222.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor sthA Gene nd
tacctgttctTATACATAAAAGCAACagaatggtaa
4160810 4160825 4160817.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor yncD Gene nd
acgccgtcatGGTAATGAAATTGTAAatttatggaa
1523103 1523118 1523110.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
  ArcA-phosphorylated repressor kdpA Gene nd
gcgggcggggTGTAAAAAAAGTATAAaaatggcaaa
728904 728919 728911.0 nd [EXP-IEP-MICROARRAY], [COMP-AINF-PATTERN-DISCOVERY], [EXP-CHIP-CHIP] S [8]
Other High-throughput regulatory interactions with weak evidence


Alignment and PSSM for ArcA TFBSs    

Aligned TFBS of ArcA   
  Sequence
  TACAAATCATTAACAAA
  AACAATTATTTAACAAA
  TAAAAATTGTTAACAAT
  AACATTTAGTTAACTTA
  AACATTTAGTTAACCAT
  TACGCTTTATTAACAAT
  TGCATATTTTTAACACA
  AACATAATATTAACTCA
  TGCTTTTTATTAACATA
  AACAATTGGTTAATAAA
  ATCATTTAATTAACTAT
  AAAACTTGATTAACATC
  AACGATTTGATAACAAC
  AACAAGTGGTTCACAAA
  AACATTTTGTTAGCACT
  GAAACATGATTAACATA
  AGCTCTTAATTAACAAC
  TGCAAATCGATAACAAC
  AAAATATAATGAACAAT
  TACATAATATCAACACC
  TAATTATTATTAACCTC
  AACAATTATTTTACATA
  TTATTTTTGTTAACATT
  TACATAAATTTAACCAG
  ATTATATTGTAAACATA
  AATACATTGTTAATTAA
  AACATGTTAATAAAAAC
  AATTATAAGTTAACTAA
  ATATTATAATTAACTCA
  TAATTTTGATTAATAAT
  AATATTTGATTATCCAA
  CACCTAAGATTAACTTA
  TACATCAATTTAACATT
  ATCAAATTCGTAACAAT
  AACCATTTTTTTACATT
  TAACTGTCAATAACACA
  TGAAAATGATTATCAAT
  CACGTTTTTATAACCAT
  TTCACATCATTAACCGT
  TAACTATAATGAACCAA
  TAATGGTTATTAACATA
  ACTTTATAATTAACAGA
  TTATATTGATAAACTAA
  TACTATTTAAAATCAAA
  ATCCTGTAATTAAAACA
  ATAAATTAATTAAAATG
  AAAACTTCGTTAATTCG
  CACATTTTGACAAAACA
  GACGAGATACTAACAAA
  AACATACTTGCAACATT
  AACAAAGTTGTTACAAA
  CACAAACGGTTAATTAT
  TTAGTGTAATTAATTAA
  TTTAATAGATAAACACC
  CGGAAATATTTAACTTG
  GTCAAAATTTAAACTAC
  CACAAAATCATTACAAT
  CTGATATTTATAGCAAA
  TATAAATTGATCACCGT
  AACAAATCATTTAAGTT
  TGTTTTACATCAACTTA
  TAAATATCGGTAATTTG
  TATTCACCGAAAACAAA
  GGGCAATTTTTAACGTA
  ACCGTTTAGTCCACTTT
  AGACATTGTTACACAAC
  TCACCTTTCTCAACGAA
  TCTGTGTAATAAATAAA
  AAAACAATAAAATCCAT
  AAAGCAACATAAAAAAG
  TCCATTTTTATCGCTAA
  AATACGCCGTTAATGAA
  AAGGAGTTGTGATCAAG
  TATCCCTACACAACACA
  ACCGAGGTCACAACATA
  AGGTCCAGATTAACAGG
  GAATAAGTGTAAACGCG
  TATCACGTTTCAACTTC
  TAGTATTGACAAGCCAA

Position weight matrix (PWM). ArcA matrix-quality result    
A	36	50	22	43	31	34	14	20	36	15	12	69	70	6	46	41	38
C	7	6	38	10	14	4	4	11	5	2	9	5	0	64	10	12	11
G	5	10	6	10	1	11	4	14	22	4	3	0	4	0	5	4	9
T	31	13	13	16	33	30	57	34	16	58	55	5	5	9	18	22	21

Consensus    
;	consensus.strict             	aacatattattAACaaa
;	consensus.strict.rc          	TTTGTTAATAATATGTT
;	consensus.IUPAC              	wacawwttrttAACaaa
;	consensus.IUPAC.rc           	TTTGTTAAYAAWWTGTW
;	consensus.regexp             	[at]aca[at][at]tt[ag]ttAACaaa
;	consensus.regexp.rc          	TTTGTTAA[CT]AA[AT][AT]TGT[AT]

PWM logo   


 


Evolutionary conservation of regulatory elements    
     Note: Evolutionary conservation of regulatory interactions and promoters is limited to gammaproteobacteria.
TF-target gene evolutionary conservation
Promoter-target gene evolutionary conservation


Evidence    

 [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] Binding of purified proteins

 [EXP-IPI] Inferred from physical interaction

 [EXP-IMP-REACTION-BLOCKED] Reaction blocked in mutant

 [EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis

 [COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.

 [EXP-IEP-MICROARRAY] high throughput expression microarray evidence

 [COMP-AINF-PATTERN-DISCOVERY] Automated inference based on sequence pattern discovery

 [EXP-CHIP-CHIP] high throughput ChIP-chip evidence

 [EXP-IMP-SITE-MUTATION] Site mutation

 [COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences

 [EXP-GSELEX] high throughput Genomic SELEX-chip evidence

 [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] Binding of cellular extracts

 [EXP-DAP-SEQ] high throughput DNA Affinity Purification (DAP) Sequencing


Reference(s)    

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 [67] Tardat B., Touati D., 1993, Iron and oxygen regulation of Escherichia coli MnSOD expression: competition between the global regulators Fur and ArcA for binding to DNA., Mol Microbiol 9(1):53-63

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