![]() ![]() |
Synonyms: ArgP-L-arginine, ArgP, ArgP-L-lysine |
Summary:
ArgP, for "arginine protein," controls the transcription of genes involved in the arginine transport system and genes involved in DNA replication. DNA replication is also regulated directly by ArgP when the protein binds to three 13-mers located in the origin of replication (OriC), which blocks the DNA opening by DnaA and inhibits this cellular process [15, 16, 17] DNA binding by ArgP is prevented when the serine protease Do (DegP) hydrolyzes this transcriptional regulator [18]. ArgP was first identified as an inhibitor of oriC-initiated DNA replication in vitro. It has also subsequently been described as a nucleoid-associated protein that shows apparently sequence-nonspecific DNA-binding activity [19] ArgP is a noncanonical regulator, as it binds to a number of additional sites in the genome without an apparent direct regulatory effect, exhibiting low-affinity binding to these additional sites [3, 12, 17] To activate transcription, ArgP recognizes AT-rich DNA-binding sites, but no consensus sequence has been identified. Read more > |
Transcription factor | ![]() ![]() |
||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF conformation(s): |
|
||||||||||||||||||||||||||||
Evolutionary Family: | LysR | ||||||||||||||||||||||||||||
TFBs length: | 20 | ||||||||||||||||||||||||||||
Sensing class: | Using internal synthesized signals | ||||||||||||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||||||||||||
Gene name: | argP | ||||||||||||||||||||||||||||
Genome position: | 3059753-3060646 | ||||||||||||||||||||||||||||
Length: | 894 bp / 297 aa | ||||||||||||||||||||||||||||
Operon name: | argP | ||||||||||||||||||||||||||||
TU(s) encoding the TF: |
|
Regulon |
![]() ![]() |
||||||
---|---|---|---|---|---|---|---|
Regulated gene(s) | argO, argP, dapB, dapD, dnaA, dnaN, gdhA, lysA, lysC, lysP, nrdA, nrdB, recF, yfaE | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
lysine (5)
DNA replication (3)
Porters (Uni-, Sym- and Antiporters) (2)
Transcription related (2)
nucleoproteins, basic proteins (2)
Read more >
|
||||||
Regulated operon(s) | argO, argP, dapB, dnaAN-recF, gdhA, lysA, lysC, lysP, map-glnD-dapD, nrdAB-yfaE | ||||||
First gene in the operon(s) | argO, argP, dapB, dapD, dnaA, gdhA, lysA, lysC, lysP, nrdA | ||||||
Simple and complex regulons | ArgP ArgP,CRP,DnaA,Fis,H-NS,NrdR ArgP,CRP,FNR,Fur,Nac ArgP,DnaA,ppGpp ArgP,Lrp Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
![]() |
---|
Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ArgP | activator | asd | Transcription-Unit | nd | nd | nd | nd | nd | [EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] | W | [3] |
Alignment and PSSM for ArgP TFBSs | ![]() |
---|
Aligned TFBS of ArgP |
---|
Sequence | |
---|---|
ATTTGCTTTCCTGGGTCAT | |
ATTTTGTGTCAGGTTGCAT | |
ATTTTCCAATATGCGGCGT | |
ATTAGCGGAAATTGATAAT | |
AGTTTTTCTGATTGCCAAT | |
AGATTATGTGATGACTCGT | |
AATTTTTGTCTATGGTCAT | |
TTTATCATTAATTTCTAAT | |
ATTTGGTTATGAGATTACT | |
CTATTCGGTTATTGTTAAA | |
ATTCGCTTATATATTGACC | |
AAATTGTGTCATAGTGCAG | |
ATTTCTTGAACGGCATAAT | |
TTTTGCAATCATTAGCAAA | |
TTTCACTGATATCCCTCCC | |
ACTTTTGTTCGAGTGGAGT | |
ATTGATATAGATGGCTTAT | |
ATTATAAGTAAAGCAGCCA | |
AGACACCTTCATGATCGCC |
Position weight matrix (PWM). ArgP matrix-quality result |
---|
A 15 2 4 3 3 2 4 2 7 4 14 4 2 4 3 0 9 11 3 C 1 1 0 3 1 9 2 1 0 7 2 0 1 4 5 3 8 5 3 G 0 3 0 1 5 3 3 9 0 3 2 2 10 7 5 6 1 3 1 T 3 13 15 12 10 5 10 7 12 5 1 13 6 4 6 10 1 0 12 |
Consensus |
---|
; consensus.strict attttctgtcatgggtcat ; consensus.strict.rc ATGACCCATGACAGAAAAT ; consensus.IUPAC atttkctkwcatksbkmmt ; consensus.IUPAC.rc AKKMVSMATGWMAGMAAAT ; consensus.regexp attt[gt]ct[gt][at]cat[gt][cg][cgt][gt][ac][ac]t ; consensus.regexp.rc A[GT][GT][AC][ACG][CG][AC]ATG[AT][AC]AG[AC]AAAT |
Evolutionary conservation of regulatory elements | ![]() |
---|
Reference(s) |
![]() |
---|---|