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Synonyms: NagC, NagC-N-acetyl-D-glucosamine 6-phosphate |
Summary:
The NagC, "N-acetylglucosamine," transcriptional dual regulator participates in regulating the phosphotransferase system (PTS) [18] Its function is to coordinate the biosynthesis of the amino sugars, D-glucosamine (GlcN) and N-acetylglucosamine (GlcNAc) with their catabolism [1, 2, 12, 19]. The specific inducer for NagC is GlcNAc-6-P, the product of GlcNAc transport by the PTS [1, 19] NagC is displaced from its DNA targets by interacting with GlcNAc-6-P [1] Mutation in the first two amino acids of the recognition helix of the DNA-binding motif causes GlcNAc6P to act with NagC as a corepressor instead of as an inducer [15]. Proline at the first position of this helix seems to contribute to the distinction between the NagC binding sites and suboptimal sites [15]. Based on the structure of |FRAME: PD01896|, models for the three-dimensional structure of NagC and for the binding of GlcNAc-6-P were developed [18] The Nag regulon consists of two divergent operons, nagE and nagBACD. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | MarR | |||||||||||||||||||||
TFBs length: | 23 | |||||||||||||||||||||
TFBs symmetry: | inverted-repeat | |||||||||||||||||||||
Sensing class: | External sensing using transported metabolites | |||||||||||||||||||||
Connectivity class: | Local Regulator | |||||||||||||||||||||
Gene name: | nagC | |||||||||||||||||||||
Genome position: | 700374-701594 | |||||||||||||||||||||
Length: | 1221 bp / 406 aa | |||||||||||||||||||||
Operon name: | nagBAC-umpH | |||||||||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | chbA, chbB, chbC, chbF, chbG, chbR, chiP, chiQ, chiZ, creA, creB, creC, creD, crr, dinI, feoA, feoB, feoC, fimB, galP, glmS, glmU, manX, manY, manZ, nagA, nagB, nagC, nagE, nanC, nanM, nanS, ptsH, ptsI, umpH, ydeM, ydeN, ydeP | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
carbon compounds (14)
membrane (9)
Phosphotransferase Systems (PEP-dependent PTS) (8)
amino sugar conversions (5)
operon (4)
Read more >
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Regulated operon(s) | chbBCARFG, chiZPQ, creABCD, dinI, feoABC, fimB, galP, glmUS, manXYZ, nagBAC-umpH, nagE, nanCMS, ptsHI-crr, ydeNM, ydeP | ||||||
First gene in the operon(s) | chbB, chiZ, creA, dinI, feoA, fimB, galP, glmU, manX, nagB, nagE, nanC, ptsH, ydeN, ydeP | ||||||
Simple and complex regulons | AraC,GadX,NagC BasR,DksA,DksA-ppGpp,H-NS,IHF,NagC,NanR,ppGpp CRP,ChbR,NagC CRP,Cra,Mlc,NagC CRP,GalR,GalS,NagC Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Functional conformation | Function | Object name | Object type | Distance to first Gene | Sequence | LeftPos | RightPos | Center Position | Growth Condition | Evidence | Confidence level (C: Confirmed, S: Strong, W: Weak) | References | |
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NagC | unknown | eutSPQTDM | Transcription-Unit | nd | nd | nd | nd | nd | [COMP-AINF-SIMILAR-TO-CONSENSUS] | nd | nd |
Alignment and PSSM for NagC TFBSs | ![]() |
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Aligned TFBS of NagC |
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Sequence | |
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AAATAATTCGCGAAGATAATTAAGA | |
ACATATTTCATGATGAGAATTATGC | |
AGTAATTTTACGAAGAGAAATAAGT | |
CTATTTTTCGCGACGCGAATTATCA | |
AATTAATTCGCGAAGAAAAGCAGAA | |
ATTAATTTCGCGCATCAAAATAATT | |
ATTTAATTCGTATCGCAAATTAAAC | |
TCTTAATTCACAATAAAAAATAACC | |
AATTAGTTCGTCACGGTAAATAACA | |
AGAAATTTCGAAAGGTAAAATATCC | |
ATATAATTCGAATAGTGAATTACCC | |
ACATATTTTGTGACACGAATTGCAA | |
ACTTATTTTATCATTCAAAAAATCA | |
AGTAATTTCTCGCCGATAAACAACT | |
ATATTTTTCAATATAAAAAATAAGA | |
TCTTATTTCGATCAATGAATAAACA | |
GGTTATTTTACCTGTATAAATAACC | |
GTCCATTTCACGATGAAAAAAATGT | |
ACTTTTTTTGTGGCTGAAAGGAGTA | |
AAATAAATCGCGAAACGCAGGGGTT |
Position weight matrix (PWM). NagC matrix-quality result |
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A 15 4 8 4 17 6 1 0 0 7 4 4 13 7 5 9 9 19 20 10 3 18 10 3 9 C 1 6 1 1 0 0 0 0 15 0 10 3 3 6 0 6 0 1 0 0 2 0 2 9 6 G 2 4 0 0 0 1 0 0 0 12 0 11 1 2 11 2 7 0 0 3 2 2 3 5 0 T 2 6 11 15 3 13 19 20 5 1 6 2 3 5 4 3 4 0 0 7 13 0 5 3 5 |
Consensus |
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; consensus.strict acttAtTTCGcgacgagAAatAaca ; consensus.strict.rc TGTTATTTCTCGTCGCGAAATAAGT ; consensus.IUPAC aywtAwTTCRygamgmrAAwtAasm ; consensus.IUPAC.rc KSTTAWTTYKCKTCRYGAAWTAWRT ; consensus.regexp a[ct][at]tA[at]TTC[AG][ct]ga[ac]g[ac][ag]AA[at]tAa[cg][ac] ; consensus.regexp.rc [GT][CG]TTA[AT]TT[CT][GT]C[GT]TC[AG][CT]GAA[AT]TA[AT][AG]T |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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