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Synonyms: PurR-Guanine, PurR, PurR-hypoxanthine |
Summary:
PurR dimer controls several genes involved in purine nucleotide biosynthesis and its own synthesis [7, 8, 21, 26]. This regulator necessarily binds two products of purine metabolism, hypoxanthine and guanine, to induce the conformational change that allows PurR to bind DNA [26, 27, 28]. PurR belongs to the GalR/LacI family [29], and it shows 35%, 33%, and 26% identity with CytR, GalR, and LacI, respectively [10]. As with other members of this group, PurR shows a helix-turn-helix motif in the N-terminal domain for DNA binding [10, 26] and a ligand-binding and dimerization motif in the C-terminal domain that shows similarity with ligand binding sites of periplasmic sugar-binding proteins [26, 29, 30]. Read more > |
Transcription factor | ![]() ![]() |
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TF conformation(s): |
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Evolutionary Family: | GalR/LacI | ||||||||||||||||||||||||||||
TFBs length: | 16 | ||||||||||||||||||||||||||||
Sensing class: | Using internal synthesized signals | ||||||||||||||||||||||||||||
Connectivity class: | Local Regulator | ||||||||||||||||||||||||||||
Gene name: | purR | ||||||||||||||||||||||||||||
Genome position: | 1737844-1738869 | ||||||||||||||||||||||||||||
Length: | 1026 bp / 341 aa | ||||||||||||||||||||||||||||
Operon name: | purR | ||||||||||||||||||||||||||||
TU(s) encoding the TF: |
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Regulon |
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Regulated gene(s) | carA, carB, codA, codB, cvpA, gcvH, gcvP, gcvT, glnB, glyA, guaA, guaB, hflD, prs, purA, purB, purC, purD, purE, purF, purH, purK, purL, purM, purN, purR, purT, pyrC, pyrD, speA, speB, ubiX | ||||||
Multifun term(s) of regulated gene(s) |
MultiFun Term (List of genes associated to the multifun term)
purine biosynthesis (15)
nucleotide and nucleoside conversions (7)
pyrimidine biosynthesis (5)
amino acids (5)
formyl-THF biosynthesis (5)
Read more >
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Regulated operon(s) | carAB, codBA, cvpA-purF-ubiX, gcvTHP, glrR-glnB, glyA, guaBA, hflD-purB, lolB-ispE-prs, purA, purC, purEK, purHD, purL, purMN, purR, purT, pyrC, pyrD, speAB | ||||||
First gene in the operon(s) | carA, codB, cvpA, gcvT, glnB, glyA, guaB, hflD, prs, purA, purC, purE, purH, purL, purM, purR, purT, pyrC, pyrD, speA | ||||||
Simple and complex regulons | CRP,DnaA,Fis,PurR CRP,FNR,GcvA,Lrp,PurR FNR,PurR Fis,IHF,PepA,PurR,RutR Fis,PurR Read more > | ||||||
Simple and complex regulatory phrases | Regulatory phrase (List of promoters regulated by the phrase) |
Transcription factor regulation |
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Alignment and PSSM for PurR TFBSs | ![]() |
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Aligned TFBS of PurR |
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Sequence | |
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ACGCAAACGTTTTCGTT | |
ACGCAAACGTTTTCTTT | |
GCGCAAACGTTTTCGTT | |
ACGCAACCGTTTTCCTT | |
ACGCAAACGGTTTCGTC | |
ACGCAATCGGTTACCTT | |
ACGCAAACGATTACCTT | |
AGGCAAACGTTTACCTT | |
GCGCAACCGGTTTCTTT | |
GCGGAAACGTTTTCCTT | |
AAGCAATCGTTTTCGTG | |
ACGCAATCGTTCTCTTT | |
TCGCAAACGTTTGCTTT | |
ACGCAAACGTTTTCCGA | |
GCGAAAACGTTTTCTTG | |
ACGCAAACGTGTGCGTC | |
GCGCAAGCGTTTTCCAG | |
AGCCAATCGTTTTCCTC | |
ATGCAATCGGTTACGCT | |
GAGCAAACGTTTCCACT | |
ATGCAAACGATTTCAAG | |
AAGCAAACGGTGATTTT |
Position weight matrix (PWM). PurR matrix-quality result |
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A 15 3 0 1 22 22 14 0 0 2 0 0 5 0 2 2 1 C 0 15 1 20 0 0 2 22 0 0 0 1 1 21 8 2 3 G 6 2 21 1 0 0 1 0 22 5 1 1 2 0 6 1 4 T 1 2 0 0 0 0 5 0 0 15 21 20 14 1 6 17 14 |
Consensus |
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; consensus.strict aCGCAAaCGtTTtCctt ; consensus.strict.rc AAGGAAAACGTTTGCGT ; consensus.IUPAC rCGCAAaCGkTTtCstt ; consensus.IUPAC.rc AASGAAAMCGTTTGCGY ; consensus.regexp [ag]CGCAAaCG[gt]TTtC[cg]tt ; consensus.regexp.rc AA[CG]GAAA[AC]CGTTTGCG[CT] |
Evolutionary conservation of regulatory elements | ![]() |
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Reference(s) |
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