RegulonDB

Regulon
Regulated gene(s)	aceA, aceB, aceK, acs, actP, adiA, amiA, atoA, atoB, atoD, atoE, carA, carB, csgD, csgE, csgF, csgG, csrB, cysG, cysH, cysI, cysJ, dcuD, dmsA, dmsB, dmsC, dppA, dppB, dppC, dppD, dppF, dps, dusB, envZ, fhlA, fimA, fimB, fimC, fimD, fimF, fimG, fimH, fimI, fis, flhC, flhD, fliA, fliZ, fnr, focA, folA, gcd, glcA, glcB, glcD, glcE, glcF, glcG, glmY, glnH, glnP, glnQ, glpQ, glpT, gltA, gltD, gltF, hemA, hemF, hipA, hipB, hpt, htrE, hycA, hycB, hycC, hycD, hycE, hycF, hycG, hycH, hycI, hypA, hypB, hypC, hypD, hypE, ibpB, ihfA, ihfB, ilvA, ilvD, ilvE, ilvG, ilvL, ilvM, ilvX, lyxK, micF, mtr, narG, narH, narI, narJ, narK, narS, ndh, nirB, nirC, nirD, nmpC, norV, norW, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, ompC, ompF, ompR, osmE, osmY, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaZ, patA, pflB, phoU, plaR, prfA, prmC, proV, proW, proX, pspA, pspB, pspC, pspD, pspE, pspG, pspH, pstA, pstB, pstC, pstS, rpoE, rpoH, rseA, rseB, rseC, rseD, rtcA, rtcB, sdhX, sgbE, sgbH, sgbU, sodA, sodB, sra, ssuA, ssuB, ssuC, ssuD, ssuE, sucA, sucB, sucC, sucD, sufA, sufB, sufC, sufD, sufE, sufS, tcyJ, tdcA, tdcB, tdcC, tdcD, tdcE, tdcF, tdcG, tyrP, ubiA, ubiC, ulaA, ulaB, ulaC, ulaD, ulaE, ulaF, ulaG, uspA, uspB, yadV, yeiL, yiaK, yiaL, yiaM, yiaN, yiaO, yjbE, yjbF, yjbG, yjbH, yjcH Read more >
Multifun term(s) of regulated gene(s)	MultiFun Term (List of genes associated to the multifun term) membrane (43) actP, atoB, csgF, dcuD, dmsA, dmsB, dmsC, dppB, dppC, envZ, focA, gcd, glcA, glnP, glpT, hycC, hycD, hycF, mtr, narI, narK, nirC, nrfC, nrfD, nrfE, nuoA, nuoH, nuoJ, nuoK, nuoL, nuoM, nuoN, proW, pstA, pstC, rseC, ssuC, tdcC, tyrP, ubiA, uspB, yiaM, yiaN anaerobic respiration (33) dmsA, dmsB, dmsC, fnr, glpT, hypA, hypC, hypD, hypE, narG, narH, narI, narJ, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN carbon compounds (21) acs, focA, gcd, glcA, glcB, lyxK, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaJ, paaK, paaZ, sgbE, sgbU, ulaD, yiaK Transcription related (19) csgD, fhlA, fis, flhC, flhD, fliA, fnr, hipB, ihfA, ihfB, ompR, plaR, rpoE, rpoH, rseA, rseB, rseC, tdcA, yeiL aerobic respiration (16) glpT, ndh, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN, ubiA electron donors (15) gcd, ndh, nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN Porters (Uni-, Sym- and Antiporters) (13) actP, dcuD, focA, glcA, glpT, mtr, narK, nirC, tdcC, tyrP, yiaM, yiaN, yiaO operon (13) fhlA, fimB, flhC, flhD, gltF, hycA, ompR, osmE, plaR, pspA, pspB, pspC, tdcA Oxidoreduction-driven Active Transporters (13) nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN sulfur metabolism (12) cysH, cysI, cysJ, ssuB, ssuD, ssuE, sufA, sufB, sufC, sufD, sufE, sufS fermentation (12) fhlA, hycA, hycB, hycC, hycD, hycE, hycF, hycG, hycH, hypB, pflB, tdcE activator (11) csgD, fhlA, fis, flhC, flhD, fnr, ihfA, ihfB, ompR, tdcA, yeiL repressor (10) csgD, fis, flhC, flhD, fnr, hipB, ihfA, ihfB, ompR, plaR chaperoning, repair (refolding) (10) dppA, fimC, hycI, hypB, hypC, narJ, nrfE, nrfF, nrfG, yadV electron acceptors (9) dmsA, dmsB, dmsC, narG, narH, narI, nrfA, nrfB, nrfC pilus (8) fimA, fimB, fimC, fimD, fimF, fimG, fimH, fimI posttranslational modification (7) aceK, envZ, hipA, hycI, hypD, hypE, prmC amino acids (7) dppA, dppD, dppF, tdcA, tdcB, tdcE, tdcG ABC superfamily, membrane component (7) dppB, dppC, glnP, proW, pstA, pstC, ssuC nitrogen metabolism (7) gltB, gltD, narK, nirB, nirC, nirD, patA phosphorous metabolism (7) phoU, pstA, pstB, pstC, pstS, ssuA, ssuC ABC superfamily, periplasmic binding component (6) dppA, glnH, proX, pstS, ssuA, tcyJ ABC superfamily ATP binding cytoplasmic component (6) dppD, dppF, glnQ, proV, pstB, ssuB incorporation of metal ions (6) dps, sufA, sufB, sufC, sufD, sufE sigma factors, anti-sigmafactors (6) fliA, rpoE, rpoH, rseA, rseB, rseC cytochromes (6) narI, nrfA, nrfB, nrfE, nrfF, nrfG TCA cycle (5) gltA, sucA, sucB, sucC, sucD other (mechanical, nutritional, oxidative stress) (5) ibpB, rpoE, rseA, rseB, rseC isoleucine/valine (5) ilvA, ilvD, ilvE, ilvL, ilvM osmotic pressure (5) osmE, osmY, proV, proW, proX fatty acids (4) acs, atoA, atoB, atoD starvation (4) dps, rseB, rseC, ssuE DNA recombination (4) fimB, fis, ihfA, ihfB temperature extremes (4) ibpB, rpoE, rpoH, rseA detoxification (4) norW, sodA, sodB, uspB prophage genes and phage related functions (4) pspA, pspB, pspC, pspD biosynthesis of macromolecules (cellular constituents) (4) yjbE, yjbF, yjbG, yjbH glyoxylate bypass (3) aceA, aceB, aceK covalent modification, demodification, maturation (3) aceK, envZ, hipA posttranscriptional (3) csrB, glmY, pspH heme, porphyrine (3) cysG, hemA, hemF nucleoproteins, basic proteins (3) dps, fis, ihfB motility, chemotaxis, energytaxis (aerotaxis, redoxtaxis etc) (3) flhC, flhD, fliA flagella (3) flhC, flhD, fliA stimulon (3) fliA, rpoE, rpoH unknown (3) fliZ, phoU, uspA glycolate metabolism (3) glcD, glcE, glcF glutamine (3) glnH, glnP, glnQ translation (3) hipA, prfA, sra antisense RNA (3) micF, micF, sdhX adaptations (3) micF, uspA, uspB unassigned reversible reactions (3) sgbH, ulaE, ulaF threonine catabolism (3) tdcB, tdcD, tdcE Phosphotransferase Systems (PEP-dependent PTS) (3) ulaA, ulaB, ulaC fatty acids and phosphatidic acid (2) acs, glpT arginine (2) carA, carB pyrimidine biosynthesis (2) carA, carB fimbri, pili (2) csgF, fimB RNA modification (2) dusB, rtcA two component regulatory systems (external signal) (2) envZ, ompR flagellum (2) flhC, flhD misc. glycerol metabolism (2) glpQ, glpT glutamate (2) gltB, gltD defense/survival (2) micF, pspG electron carriers (2) norV, norW Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily) (2) ompC, ompF inhibition / activation of enzymes (2) pspA, sufE menaquinone, ubiquinone (2) ubiA, ubiC acetate catabolism (1) acs pH (1) adiA murein (peptidoglycan) (1) amiA murein (1) amiA Putative uncharacterized transport protein (1) atoE Accessory Factors Involved in Transport (1) csgE Channel-type Transporters (1) csgG RNA degradation (1) csrB DNA structure level (1) fimB glycoprotein (1) fimH global (1) fnr folic acid (1) folA formyl-THF biosynthesis (1) folA misc. glucose metabolism (1) gcd glyoxylate degradation (1) glcB nucleotide and nucleoside conversions (1) hpt cell structure (1) htrE alanine (1) ilvE leucine (1) ilvE translation attenuation and efficiency (1) micF drug resistance/sensitivity (1) micF tryptophan (1) mtr metabolism (1) paaI DNA related (1) rtcB RNA related (1) rtcB ribosomal proteins (1) sra ribosomes (1) sra threonine (1) tdcC tyrosine (1) tyrP carbon utilization (1) ulaG surface antigens (ECA, O antigen of LPS) (1) yjbE Read more >
Regulated operon(s)	aceBAK, acs-yjcH-actP, adiA, amiA-hemF, atoDAEB, bdm-sra, carAB, cmk-rpsA-ihfB, csgDEFG, csrB, cysJIH, dcuD, dmsABC, dppABCDF, dps, dusB-fis, fimAICDFGH, fimB, flhDC, fliAZ-tcyJ, fnr, focA-pflB, folA, gcd, glcDEFGBA, glmY, glnHPQ, glpTQ, gltA, gltBDF, hemA-prfA-prmC, hipBA, hpt, hycABCDEFGHI, hypABCDE-fhlA, ibpAB, ilvLXGMEDA, micF, mtr, narGHJI, narKS, ndh, nirBDC-cysG, nmpC, norVW, nrfABCDEFG, nuoABCEFGHIJKLMN, ompC, ompF, ompR-envZ, osmE, osmY, paaABCDEFGHIJK, paaZ, patA, plaR, proVWX, pspABCDE, pspGH, pstSCAB-phoU, rpoH, rseD-rpoE-rseABC, rtcBA, sdhCDAB-sucABCD-sdhX, sodA, ssuEADCB, sufABCDSE, tdcABCDEFG, thrS-infC-rpmI-rplT-pheMST-ihfA, tyrP, ubiCA, ulaABCDEF, ulaG, uspA, uspB, yadV-htrE, yeiL, yiaKLMNO-lyxK-sgbHUE, yjbEFGH Read more >
First gene in the operon(s)	aceB, acs, adiA, amiA, atoD, carA, csgD, csrB, cysJ, dcuD, dmsA, dppA, dps, dusB, fimA, fimB, flhD, fliA, fnr, focA, folA, gcd, glcD, glmY, glnH, glpT, gltA, gltB, hemA, hemF, hipB, hpt, hycA, hypA, ibpB, ihfA, ihfB, ilvL, micF, mtr, narG, narK, ndh, nirB, norV, nrfA, nuoA, ompC, ompF, ompR, osmE, osmY, paaA, paaZ, patA, plaR, proV, pspA, pspG, pstS, rseD, rpoH, rtcB, sodA, sodB, ssuE, sucA, sufA, tdcA, tyrP, ubiC, ulaA, ulaG, uspA, uspB, yadV, yeiL, yiaK, yjbE Read more >
Simple and complex regulons	AcrR,CRP,FliZ,Fur,H-NS,HdfR,IHF,LrhA,MatA,OmpR,QseB,RcsAB,YjjQ AcrR,H-NS,HU,IHF,Lrp,MarA,OmpR,Rob,SoxS AdiY,ArgR,CRP,FNR,Fur,GadE,HdfR,IHF,Lrp,Nac AdiY,H-NS,IHF ArcA,CRP,Cra,IHF,IclR ArcA,CRP,FNR,Fur,IHF,MarA,Rob,SoxR,SoxS ArcA,CRP,FNR,IHF,NarL ArcA,CRP,IHF ArcA,FNR,Fis,Fur,IHF,NsrR,PdhR ArcA,FNR,Fur,IHF ArcA,FNR,IHF ArcA,FNR,IHF,NarL ArcA,GlcC,IHF,PdhR AtoC,IHF BasR,BolA,BtsR,CRP,CpxR,Cra,CsgD,FliZ,H-NS,IHF,MlrA,MqsA,OmpR,RcdA,RcsAB,RstA,ppGpp BasR,BtsR,CRP,CpxR,Cra,CsgD,FliZ,H-NS,IHF,MlrA,MqsA,OmpR,RcdA,RcsAB,RstA BasR,DksA,DksA-ppGpp,H-NS,IHF,NagC,NanR,ppGpp CRP,CpxR,EnvY,Fur,IHF,OmpR,PhoB,RstA CRP,Cra,FNR,Fis,H-NS,IHF,NarL,NarP CRP,DksA-ppGpp,Fis,IHF,ppGpp CRP,FNR,Fis,GlpR,IHF CRP,FNR,IHF,TdcA,TdcR CRP,Fis,FliZ,IHF,Lrp CRP,Fis,IHF CRP,IHF CRP,IHF,MprA,OmpR CRP,IHF,NsrR CRP,IHF,PaaX CRP,IHF,PaaX,SlyA CRP,IHF,PlaR CRP,IHF,UlaR Cbl,CysB,FNR,IHF CpxR,EnvY,IHF,Lrp,OmpR,YjjQ CsgD,FlhDC,H-NS,IHF,MatA,NsrR,SutR CysB,IHF FNR,Fis,FlhDC,IHF,NarL,NarP,NsrR FNR,Fis,IHF,NarL FNR,Fis,IHF,NarL,RstA FNR,IHF FNR,IHF,Lrp,YeiL FNR,IHF,NarL,NarP,NorR FNR,IHF,PhoB FadR,IHF,ppGpp FhlA,IHF,ModE,NsrR FhlA,IHF,NsrR Fis,H-NS,IHF,MntR,OxyR Fis,IHF Fis,IHF,NtrC Fis,IHF,OmpR,ppGpp Fis,IHF,PepA,PurR,RutR Fur,IHF,IscR,NsrR,OxyR GlrR,IHF H-NS,IHF H-NS,IHF,Lrp,QseB HU,IHF,TrpR,TyrR HU,IHF,TyrR HipAB,HipB,IHF IHF IHF,Lrp IHF,Lrp,ppGpp IHF,ModE IHF,NtrC IHF,PspF IHF,RcsAB IHF,RtcR IHF,TyrR IHF,UlaR IHF,UvrY IHF,ppGpp Read more >
Simple and complex regulatory phrases	Regulatory phrase (List of promoters regulated by the phrase) [IHF,-](44) acsp, acsp1, acsp2, amiAp, carAp1, dmsAp2, flhDp, fliAp1, glpTQp, hemFp1, hptp, ihfAp4, ihfBp, ihfBp2, ilvLp1, micFp1, micFp2, mtrp2, ndhp, nirBp, nmpCp, norVp, nrfAp, nuoAp2, ompCp1, ompCp3, ompFp, ompFp2, ompRp1, osmEp, osmEp2, osmYp, osmYp2, plaRp, rpoEp1b, sodAp, sodBp, ssuEp, sucAp, tyrPp1, ubiCp, ulaAp, ulaGp, uspBp [IHF,+](58) aceBp, adiAp, atoDp, carAp1, csgDp1, csgDp3, csrBp, cysJp, dcuDp2, dppAp, dpsp, dpsp2, dusBp, fimAp, fimBp2, fnrp, focAp1, folAp, gcdp1, glcDp, glmYp1, glnHp2, gltAp1, gltBp, gltBp2, hemAp1, hipBp, hycAp, hypAp, ibpBp, ilvLp2, narGp, narKp1, nirBp, norVp, nrfAp, ompFp, ompFp2, paaAp, paaZp, proVp3, pspAp, pspGp, pstSp, pstSp2, rpoHp6, rtcBp, srap, ssuEp, sufAp, tdcAp, uspAp1, yadVp1, yadVp2, yadVp3, yeiLp, yiaKp1, yjbEp1

Transcription factor binding sites (TFBSs) arrangements

Functional conformation	Function	Promoter	Sigma factor	Central Rel-Pos	Distance to first Gene	Genes	Sequence	LeftPos	RightPos	Evidence	Confidence level (C: Confirmed, S: Strong, W: Weak)	References
IHF	activator	aceBp	Sigma70	-159.0	-235.0	aceB, aceA, aceK	tcgttaagcgATTCAGCACCTTAcctcaggcac nd	4215237	4215249	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[1], [1]
IHF	activator	aceBp	Sigma70	-72.0	-148.0	aceB, aceA, aceK	ttcatattgtTATCAACAAGTTAtcaagtattt nd	4215324	4215336	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[1], [1]
IHF	repressor	acsp	Sigma38	-225.0	-245.0	acs, yjcH, actP	ctttaatcaaTTGTAAGTGCATGtaaaatacca nd	4287610	4287622	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[2], [2], [3], [4]
IHF	repressor	acsp	Sigma38	-180.0	-200.0	acs, yjcH, actP	tcagtatcttCCTCTTTTTCAACagcatgcata nd	4287565	4287577	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[2], [2]
IHF	repressor	acsp	Sigma38	-153.0	-173.0	acs, yjcH, actP	tgcataactgCATGTTCCTCAAAgaattaatca nd	4287538	4287550	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[2], [2], [5], [5], [6]
IHF	repressor	acsp1	Sigma70	-21.0	-245.0	acs, yjcH, actP	ctttaatcaaTTGTAAGTGCATGtaaaatacca nd	4287610	4287622	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[2], [2], [3]
IHF	repressor	acsp2	Sigma70	-225.0	-245.0	acs, yjcH, actP	ctttaatcaaTTGTAAGTGCATGtaaaatacca nd	4287610	4287622	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[2], [2], [3], [4]
IHF	repressor	acsp2	Sigma70	-180.0	-200.0	acs, yjcH, actP	tcagtatcttCCTCTTTTTCAACagcatgcata nd	4287565	4287577	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[2], [2]
IHF	repressor	acsp2	Sigma70	-153.0	-173.0	acs, yjcH, actP	tgcataactgCATGTTCCTCAAAgaattaatca nd	4287538	4287550	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[2], [2], [5], [5], [6]
IHF	activator	adiAp	Sigma70	nd	nd	adiA	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IMP-SITE-MUTATION]	S	[7]
IHF	repressor	amiAp	Sigma70	20.5	-91.5	amiA, hemF	tgtcaactatTGAAATGAAAAGTaaaacaattc nd	2552254	2552266	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[8], [8]
IHF	activator	atoDp	Sigma54	-57.0	-92.0	atoD, atoA, atoE, atoB	cccttcatatTCAATTAGTTAAAtaactaaatc nd	2323349	2323361	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[9], [9]
IHF	activator	atoDp	Sigma54	-32.0	-67.0	atoD, atoA, atoE, atoB	actaaatccaATAATCTCATTCTggcactcccc nd	2323374	2323386	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[9], [9]
IHF	activator	carAp1	Sigma70	-305.0	-405.0	carA, carB	atttaatttaTTGATTATAAAGGgctttaattt nd	29240	29252	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[10], [10], [11], [11], [12]
IHF	repressor	carAp1	Sigma70	-305.0	-405.0	carA, carB	atttaatttaTTGATTATAAAGGgctttaattt nd	29240	29252	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[10], [10], [11], [11], [12]
IHF	activator	csgDp1	Sigma70	-173.5	-321.5	csgD, csgE, csgF, csgG	aaatatttttTATATGCATTATTAGTAAGTTATCACCATTTgtatgatttt nd	1103503	1103533	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[13], [14], [14]
IHF	activator	csgDp1	Sigma70	-66.5	-214.5	csgD, csgE, csgF, csgG	catttctaaaCTTAATAAAACCTTAAGGTTAACATTTTAATATAACGAGTTACATTTAGTTACATGTTTAAcacttgattt nd	1103381	1103441	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[14], [14]
IHF	activator	csgDp3	Sigma38	-173.5	-321.5	csgD, csgE, csgF, csgG	aaatatttttTATATGCATTATTAGTAAGTTATCACCATTTgtatgatttt nd	1103503	1103533	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[13], [14], [14]
IHF	activator	csgDp3	Sigma38	-66.5	-214.5	csgD, csgE, csgF, csgG	catttctaaaCTTAATAAAACCTTAAGGTTAACATTTTAATATAACGAGTTACATTTAGTTACATGTTTAAcacttgattt nd	1103381	1103441	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[14], [14]
IHF	activator	csrBp	Sigma70	-99.0	-99.0	csrB	tttcatttaaAATCAAAATGTTGattgttaatt nd	2924617	2924629	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[15], [15]
IHF	activator	cysJp	Sigma70	-124.0	-190.0	cysJ, cysI, cysH	gctaaattcaTTTGTTTTTCATTaggttggtta nd	2892082	2892094	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[16], [16]
IHF	activator	dcuDp2	Sigma54	-44.0	-330.0	dcuD	acatcctatcACAGGATTGAAAGtaggggaaaa nd	3374533	3374545	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[17]
IHF	repressor	dmsAp2	nd	-22.0	-103.0	dmsA, dmsB, dmsC	tctctttgatTTTCAAATTATTCgatgtataca nd	940850	940862	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[18]
IHF	activator	dppAp	Sigma70	1848.0	1683.0	dppA, dppB, dppC, dppD, dppF	aggcctacgaAAATTCTGCAATGtattgaattt nd	3706017	3706029	[EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[19]
IHF	activator	dpsp	Sigma70	-98.5	-137.5	dps	tatatctaacTCATTGAATCTTTattagttttg nd	849042	849054	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[20]
IHF	activator	dpsp2	Sigma38	-98.5	-137.5	dps	tatatctaacTCATTGAATCTTTattagttttg nd	849042	849054	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[20]
IHF	activator	dusBp	Sigma70	-114.0	-148.0	dusB, fis	tttctaatatGATGATTTTTATGagtaattatc nd	3410126	3410138	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[21], [21], [22], [22]
IHF	activator	fimAp	Sigma70	-52.0	-473.0	fimA, fimI, fimC, fimD, fimF, fimG, fimH	aggtttgattTAACTTATTGATAataaagttaa nd	4542636	4542648	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[23], [24], [25], [26]
IHF	activator	fimAp	Sigma70	77.0	-345.0	fimA, fimI, fimC, fimD, fimF, fimG, fimH	aaaaagcatcTAACTGTTTGATAtgtaaattat nd	4542764	4542776	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[23], [24], [25], [26]
IHF	activator	fimBp2	nd	-576.0	-866.0	fimB	agatcttagtTTAACTATTTGTTttataaataa nd	4540085	4540097	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[27], [27]
IHF	repressor	flhDp	Sigma70	-92.0	-290.0	flhD, flhC	ccatttatgtTAAGTAATTGAGTgttttgtgtg nd	1978481	1978493	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[28], [28]
IHF	repressor	fliAp1	Sigma70	-202.5	-232.5	fliA, fliZ, tcyJ	tacaagttgaATTGCAATTTATTGAATttgcacattt nd	2002014	2002030	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF], [EXP-IMP-SITE-MUTATION]	S	[13], [13]
IHF	repressor	fliAp1	Sigma70	-186.5	-216.5	fliA, fliZ, tcyJ	atttattgaaTTTGCACATTTTTGTAGgccggataag nd	2001998	2002014	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF], [EXP-IMP-SITE-MUTATION]	S	[13], [13]
IHF	activator	fnrp	Sigma70	-104.0	-130.0	fnr	cccttaacaaCTTAAGGGTTTTCAAatagatagac nd	1399649	1399663	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[29], [29]
IHF	activator	focAp1	Sigma70	-112.5	-139.5	focA, pflB	atttttatttGGATAATCAAATAtttactccgt nd	954599	954611	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[30]
IHF	activator	folAp	Sigma70	-65.0	-89.0	folA	tcgccagcagAATATAAAATTTTcctcaacatc nd	49728	49740	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[31], [31]
IHF	activator	gcdp1	Sigma70	-73.0	-111.0	gcd	gtataccagtAAAACTATTCATTcgcggaatct nd	141330	141342	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[32]
IHF	activator	glcDp	Sigma70	-107.0	-162.0	glcD, glcE, glcF, glcG, glcB, glcA	attatgttacATCAATTTAACATtgagttaacc nd	3128177	3128189	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[33]
IHF	activator	glmYp1	Sigma54	-169.0	-169.0	glmY	gcgacacttaACTCATTGATTTTaatattatct nd	2691503	2691515	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[34], [34], [35], [35]
IHF	activator	glmYp1	Sigma54	-52.0	-52.0	glmY	agcaacgtatAATCAGTACGTTAccaaactatt nd	2691386	2691398	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[34], [34]
IHF	activator	glnHp2	Sigma54	-152.0	-195.0	glnH, glnP, glnQ	tacgctaaatAATCACTGTGTTGagtgcacaat nd	848193	848205	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[36], [36], [37], [38]
IHF	activator	glnHp2	Sigma54	-47.0	-90.0	glnH, glnP, glnQ	tttgccgcatCTCGAAAAATCAAggagttgcaa nd	848088	848100	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-PCR-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[36], [36], [38], [38], [39]
IHF	repressor	glpTQp	Sigma70	35.0	-43.0	glpT, glpQ	ttctctcactGAATCAGGCTGTTaatcataaat nd	2352411	2352423	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[40], [40]
IHF	repressor	glpTQp	Sigma70	202.0	125.0	glpT, glpQ	ggctatgcggCTTACTATTTGGTtcgtaagaac nd	2352244	2352256	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[40], [40]
IHF	activator	gltAp1	Sigma70	-70.0	-369.0	gltA	tttaatttttAATCATCTAATTTgacaatcatt nd	754831	754843	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	S	[41], [42], [42], [43]
IHF	activator	gltBp	Sigma70	-89.0	-305.0	gltB, gltD, gltF	tccattttaaTTTCAGTCATTTAataaagaatt nd	3354414	3354426	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[44], [44], [45], [45]
IHF	activator	gltBp	Sigma70	-85.0	-301.0	gltB, gltD, gltF	ttttaatttcAGTCATTTAATAAagaattttgc nd	3354418	3354430	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[44], [44], [45], [45]
IHF	activator	gltBp2	Sigma38	-89.0	-305.0	gltB, gltD, gltF	tccattttaaTTTCAGTCATTTAataaagaatt nd	3354414	3354426	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[44], [44], [45], [45]
IHF	activator	gltBp2	Sigma38	-85.0	-301.0	gltB, gltD, gltF	ttttaatttcAGTCATTTAATAAagaattttgc nd	3354418	3354430	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[44], [44], [45], [45]
IHF	activator	hemAp1	Sigma70	nd	nd	hemA, prfA, prmC	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[46]
IHF	repressor	hemFp1	Sigma70	8.0	-13.0	hemF	agaaagcacaTTCGAAAAAGCGAtaagttatga nd	2553206	2553218	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[8], [8]
IHF	activator	hipBp	Sigma70	-117.0	-157.0	hipB, hipA	tcaaacggcgCATCAACGCCTTAtttaaatcct nd	1592593	1592605	[COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[47], [47]
IHF	repressor	hptp	Sigma70	-24.0	-95.0	hpt	agattccgcgAATGAATAGTTTTactggtatac nd	141330	141342	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[32]
IHF	activator	hycAp	Sigma54	-38.5	-64.5	hycA, hycB, hycC, hycD, hycE, hycF, hycG, hycH, hycI	atctctttaaTAACAATAAATTAaaagttggca nd	2850493	2850505	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[48], [48]
IHF	activator	hypAp	Sigma54	-127.5	-147.5	hypA, hypB, hypC, hypD, hypE, fhlA	tgccaactttTAATTTATTGTTAttaaagagat nd	2850493	2850505	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[48], [48]
IHF	activator	ibpBp	Sigma54	-31.0	-115.0	ibpB	gccgtatcgaAATCAACTAATTCcctaaggccg nd	3867006	3867018	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[49]
IHF	repressor	ihfAp4	Sigma38	-47.0	-216.0	ihfA	gcggatatttTATCCGAATGTAAgaaagttggc nd	1795762	1795774	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfAp4	Sigma38	-21.0	-190.0	ihfA	agttggcgtaAATCAGGTAGTTGgcgtaaactt nd	1795736	1795748	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfAp4	Sigma38	54.0	-116.0	ihfA	agagcctcgcCATAAGCCTGATCctgcaagata nd	1795662	1795674	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp	Sigma70	-320.0	-399.0	ihfB	cgttgaaggtTACCTGCGTGCTTctgaagcatc nd	963423	963435	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp	Sigma70	-304.0	-383.0	ihfB	cgtgcttctgAAGCATCCCGTGAccgcgttgaa nd	963439	963451	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp	Sigma70	-207.0	-286.0	ihfB	aaaaccgcgcAATCAGCCTGTCTgttcgtgcga nd	963536	963548	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp	Sigma70	-157.0	-236.0	ihfB	aaagatgcaaTCGCAACTGTTAAcaaacaggaa nd	963586	963598	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp	Sigma70	-77.0	-156.0	ihfB	taaaggcgagTAATTCTCTGACTcttcgggatt nd	963666	963678	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp	Sigma70	-2.0	-81.0	ihfB	ttcgtcctgtAATCAAGCACTAAgggcggctac nd	963741	963753	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp2	Sigma38	-320.0	-399.0	ihfB	cgttgaaggtTACCTGCGTGCTTctgaagcatc nd	963423	963435	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp2	Sigma38	-304.0	-383.0	ihfB	cgtgcttctgAAGCATCCCGTGAccgcgttgaa nd	963439	963451	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp2	Sigma38	-207.0	-286.0	ihfB	aaaaccgcgcAATCAGCCTGTCTgttcgtgcga nd	963536	963548	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp2	Sigma38	-157.0	-236.0	ihfB	aaagatgcaaTCGCAACTGTTAAcaaacaggaa nd	963586	963598	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp2	Sigma38	-77.0	-156.0	ihfB	taaaggcgagTAATTCTCTGACTcttcgggatt nd	963666	963678	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ihfBp2	Sigma38	-2.0	-81.0	ihfB	ttcgtcctgtAATCAAGCACTAAgggcggctac nd	963741	963753	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[50], [51]
IHF	repressor	ilvLp1	Sigma70	-17.0	-121.0	ilvL, ilvX, ilvG, ilvM, ilvE, ilvD, ilvA	tatttttaaaAAACAACAATTTAtattgaaatt nd	3950195	3950207	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[52], [52]
IHF	repressor	ilvLp1	Sigma70	210.0	106.0	ilvL, ilvX, ilvG, ilvM, ilvE, ilvD, ilvA	aaaggcttagAGATCAAGCCTTAacgaactaag nd	3950421	3950433	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-PCR-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[39], [52], [52]
IHF	activator	ilvLp2	Sigma70	-89.0	-121.0	ilvL, ilvX, ilvG, ilvM, ilvE, ilvD, ilvA	tatttttaaaAAACAACAATTTAtattgaaatt nd	3950195	3950207	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[52], [52], [53], [54], [55], [56]
IHF	activator	ilvLp2	Sigma70	138.0	106.0	ilvL, ilvX, ilvG, ilvM, ilvE, ilvD, ilvA	aaaggcttagAGATCAAGCCTTAacgaactaag nd	3950421	3950433	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-PCR-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[39], [52], [52], [53], [56]
IHF	repressor	micFp1	Sigma70	-72.0	-72.0	micF	tcaaggttaaAATCAATAACTTAttcttaagta nd	2313006	2313018	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[57], [57]
IHF	repressor	micFp2	Sigma38	-72.0	-72.0	micF	tcaaggttaaAATCAATAACTTAttcttaagta nd	2313006	2313018	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[57], [57]
IHF	repressor	mtrp2	Sigma70	nd	nd	mtr	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[58]
IHF	activator	narGp	Sigma70	-125.0	-182.0	narG, narH, narJ, narI	aaacgtcttaATTTACAGTCTGTtatgtggtgg nd	1279676	1279688	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[59], [59], [60], [60], [61]
IHF	activator	narKp1	Sigma70	-130.0	-155.0	narK, narS	ttttacagcaCCGTGAAAAATCTcataattttt nd	1277796	1277808	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[62], [62], [63], [63]
IHF	repressor	ndhp	Sigma70	-58.0	-151.0	ndh	cttttcagcaACAAAACTTGATTaacatcaatt nd	1165928	1165940	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[64]
IHF	repressor	ndhp	Sigma70	-17.0	-110.0	ndh	accaatgcacCATTCATGTTATTctcaatagcg nd	1165969	1165981	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[64]
IHF	repressor	ndhp	Sigma70	26.0	-68.0	ndh	ttcattgctgTAACCTGTTGTTAattaagagct nd	1166011	1166023	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[64]
IHF	activator	nirBp	Sigma70	-115.0	-139.0	nirB, nirD, nirC, cysG	catgaaatatCAGACAATTCCGTgacttaagaa nd	3493866	3493878	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[65], [65], [66], [66]
IHF	repressor	nirBp	Sigma70	-88.0	-112.0	nirB, nirD, nirC, cysG	taagaaaattTATACAAATCAGCaatataccca nd	3493893	3493905	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[65], [65], [66], [66], [67], [67]
IHF	repressor	nmpCp	nd	-144.0	nd	nmpC	ataaattggcTAATAGATTTATTtttattcagc nd	577008	577020	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IMP-SITE-MUTATION]	S	[68]
IHF	activator	norVp	Sigma54	-48.0	-85.0	norV, norW	aattttatttATAGAGTAAAAACaatcagataa nd	2832385	2832397	[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[69], [69]
IHF	repressor	norVp	Sigma54	17.0	-21.0	norV, norW	catctttttaGAACACGCTGAATaaattgaggt nd	2832449	2832461	[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[69], [69]
IHF	activator	nrfAp	Sigma70	-127.0	-220.0	nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG	tgattaattcTTTGAGGAACATGcagttatgca nd	4287538	4287550	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[2], [2], [5], [5], [6], [6]
IHF	repressor	nrfAp	Sigma70	-55.0	-148.0	nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG	tggtattttaCATGCACTTACAAttgattaaag nd	4287610	4287622	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[2], [2], [3], [4]
IHF	repressor	nuoAp2	Sigma70	-83.0	-173.0	nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN	ctaatgtgaaGAAACTTTTGTTAaagttgacaa nd	2405239	2405251	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[70], [70], [71]
IHF	repressor	nuoAp2	Sigma70	-74.0	-164.0	nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN	agaaacttttGTTAAAGTTGACAaaaggttata nd	2405230	2405242	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[70], [70], [71], [71]
IHF	repressor	nuoAp2	Sigma70	-66.0	-156.0	nuoA, nuoB, nuoC, nuoE, nuoF, nuoG, nuoH, nuoI, nuoJ, nuoK, nuoL, nuoM, nuoN	ttgttaaagtTGACAAAAGGTTAtagaaaggag nd	2405222	2405234	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[70], [70], [71], [71]
IHF	repressor	ompCp1	Sigma70	-182.0	-263.0	ompC	tacttaagaaTAAGTTATTGATTttaaccttga nd	2313006	2313018	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[57]
IHF	repressor	ompCp3	nd	-125.0	-263.0	ompC	tacttaagaaTAAGTTATTGATTttaaccttga nd	2313006	2313018	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[57]
IHF	repressor	ompFp	Sigma70	-176.0	-286.0	ompF	aatataaggaAATCATATAAATAgattaaaatt nd	987262	987274	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[72]
IHF	activator	ompFp	Sigma70	-108.0	-218.0	ompF	cggtgttcacAAAGTTCCTTAAAttttactttt nd	987194	987206	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[72]
IHF	repressor	ompFp	Sigma70	-62.0	-172.0	ompF	ttctttttgaAACCAAATCTTTAtctttgtagc nd	987148	987160	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[72]
IHF	repressor	ompFp2	Sigma38	-176.0	-286.0	ompF	aatataaggaAATCATATAAATAgattaaaatt nd	987262	987274	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[72]
IHF	activator	ompFp2	Sigma38	-108.0	-218.0	ompF	cggtgttcacAAAGTTCCTTAAAttttactttt nd	987194	987206	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[72]
IHF	repressor	ompFp2	Sigma38	-62.0	-172.0	ompF	ttctttttgaAACCAAATCTTTAtctttgtagc nd	987148	987160	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[72]
IHF	repressor	ompRp1	Sigma70	-102.0	-225.0	ompR, envZ	aggggcgtttTCATCTCGTTGATtccctttgtc nd	3536803	3536815	[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[73], [73]
IHF	repressor	ompRp1	Sigma70	-37.0	-160.0	ompR, envZ	atcatatcaaCAGAATCAATAATgtttcgccga nd	3536738	3536750	[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[73], [73]
IHF	repressor	ompRp1	Sigma70	8.0	-116.0	ompR, envZ	acttaagctgCTGTTTAATATGCtttgtaacaa nd	3536694	3536706	[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[73], [73]
IHF	repressor	osmEp	Sigma70	4.5	-23.5	osmE	caggcttatcTAACACGCTGATAaacaagagga nd	1822273	1822285	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[74], [74]
IHF	repressor	osmEp2	Sigma38	4.5	-23.5	osmE	caggcttatcTAACACGCTGATAaacaagagga nd	1822273	1822285	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[74], [74]
IHF	repressor	osmYp	Sigma70	-96.5	-339.5	osmY	tcaatttcccTTCCTTATTAGCCgcttacggaa nd	4611050	4611062	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-PCR-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[39], [75], [76]
IHF	repressor	osmYp	Sigma70	-5.0	-248.0	osmY	ttgtgatctaTATTTAACAAAGTgatgacattt nd	4611142	4611154	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[76]
IHF	repressor	osmYp2	Sigma38	-96.5	-339.5	osmY	tcaatttcccTTCCTTATTAGCCgcttacggaa nd	4611050	4611062	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-CHIP-PCR-MANUAL], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[39], [75], [76]
IHF	repressor	osmYp2	Sigma38	-5.0	-248.0	osmY	ttgtgatctaTATTTAACAAAGTgatgacattt nd	4611142	4611154	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[76]
IHF	activator	paaAp	Sigma70	-115.0	-177.0	paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK	gcgatctgtaTAGCAACTGCGGAaaacattaat nd	1453744	1453756	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[77], [77]
IHF	activator	paaZp	nd	-80.0	-108.0	paaZ	attaatgtttTCCGCAGTTGCTAtacagatcgc nd	1453744	1453756	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[77], [77]
IHF	unknown	patAp	Sigma38	-256.0	-292.0	patA	tttaaacacaAATCTAATTCCTTgatttaaaat nd	3219196	3219208	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[78], [78]
IHF	unknown	patAp2	Sigma54	-256.0	-292.0	patA	tttaaacacaAATCTAATTCCTTgatttaaaat nd	3219196	3219208	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[78], [78]
IHF	repressor	plaRp	Sigma70	-4.0	-90.0	plaR	aatctgattgATGAATTTCAAAAgacataaaaa nd	3742616	3742628	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[79], [79]
IHF	activator	proVp3	Sigma70	-18.5	-78.5	proV, proW, proX	ttgcctcagaTTCTCAGTATGTTAGggtagaaaaa nd	2804730	2804744	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[80], [80]
IHF	activator	proVp3	Sigma70	140.0	80.0	proV, proW, proX	gttcaaatatATCGAACAAGGACTTTcaaaagaaca nd	2804887	2804902	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[80], [80]
IHF	activator	pspAp	Sigma54	-42.5	-83.5	pspA, pspB, pspC, pspD, pspE	atcagatcttTATAAATCAAAAAgataaaaaat nd	1367989	1368001	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	C	[81], [82]
IHF	activator	pspGp	Sigma54	-38.5	-62.5	pspG, pspH	ttttgctgttAAATCAATAGATTatttttggca nd	4262771	4262783	[COMP]	W	[83], [83]
IHF	activator	pstSp	Sigma70	16.5	-27.5	pstS, pstC, pstA, pstB, phoU	gtagccaacaAACAATGCTTTATgaatcctccc nd	3911546	3911558	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[84], [84], [85], [86]
IHF	activator	pstSp2	Sigma38	16.5	-27.5	pstS, pstC, pstA, pstB, phoU	gtagccaacaAACAATGCTTTATgaatcctccc nd	3911546	3911558	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[84], [84], [85], [86]
IHF	repressor	rpoEp1b	Sigma70	-59.5	-288.5	rseD, rpoE, rseA, rseB, rseC	ccgctaccgaTAATCAACACGTCacatgaatgt nd	2710447	2710459	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [IC], [COMP-HINF-SIMILAR-TO-CONSENSUS], [IC]	W	[13], [87], [87]
IHF	activator	rpoHp6	Sigma54	-326.0	-356.0	rpoH	cgaagtttgaTATCAATGGCTTAtcattcgatg nd	3601133	3601145	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[88], [88]
IHF	activator	rtcBp	Sigma54	-62.0	-90.0	rtcB, rtcA	taatctttttTAAAACAATGAATtaaaaaatta nd	3558163	3558175	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[89], [89]
IHF	activator	rtcBp	Sigma54	-52.0	-80.0	rtcB, rtcA	taaaacaatgAATTAAAAAATTAagctgcttat nd	3558153	3558165	[COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[89], [89]
IHF	repressor	sodAp	Sigma70	-68.0	-119.0	sodA	cattttcctgCAAAACCATACCCttacgaaaag nd	4100685	4100697	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[90]
IHF	repressor	sodAp	Sigma70	-48.0	-99.0	sodA	cccttacgaaAAGTACGGCATTGataatcattt nd	4100705	4100717	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[90]
IHF	repressor	sodAp	Sigma70	-24.0	-75.0	sodA	taatcattttCAATATCATTTAAttaactataa nd	4100729	4100741	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[90]
IHF	repressor	sodAp	Sigma70	-1.0	-52.0	sodA	ttaactataaTGAACCAACTGCTtacgcggcat nd	4100752	4100764	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[90]
IHF	repressor	sodBp	Sigma70	-61.0	-116.0	sodB	gctaaaacttTACCCTGTTGTTAcggcaacagg nd	1735256	1735268	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[91], [91]
IHF	activator	srap	Sigma38	nd	nd	sra	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[92]
IHF	activator	ssuEp	Sigma70	-177.0	-228.0	ssuE, ssuA, ssuD, ssuC, ssuB	gacaaatcttTAATTTATAGATTtcatgaatat nd	997734	997746	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[93], [93]
IHF	activator	ssuEp	Sigma70	-134.0	-185.0	ssuE, ssuA, ssuD, ssuC, ssuB	actgaacgagTAATTCATTGATTcaacatctaa nd	997691	997703	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[93], [93]
IHF	repressor	ssuEp	Sigma70	33.0	-19.0	ssuE, ssuA, ssuD, ssuC, ssuB	aacaaaaaaaGAACAATTGGTTAtaaggagaga nd	997525	997537	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[93], [93]
IHF	repressor	sucAp	Sigma38	nd	nd	sucA, sucB, sucC, sucD, sdhX	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-AINF-SIMILAR-TO-CONSENSUS]	W	[41], [42]
IHF	activator	sufAp	Sigma70	-145.0	-177.0	sufA, sufB, sufC, sufD, sufS, sufE	taataaccatTATCTAACAATGAgatacctaat nd	1764557	1764569	[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[94], [94], [95]
IHF	activator	tdcAp	nd	-103.0	-131.0	tdcA, tdcB, tdcC, tdcD, tdcE, tdcF, tdcG	ttaacttgttGATATTTAAAGGTatttaattgt nd	3267190	3267202	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[96], [97]
IHF	repressor	tyrPp1	Sigma70	nd	nd	tyrP	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[58]
IHF	repressor	ubiCp	Sigma70	-12.0	-75.0	ubiC, ubiA	ttgcgtattaGATCACTTAATTTgctttacatc nd	4252425	4252437	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[98], [98]
IHF	repressor	ulaAp	Sigma70	nd	nd	ulaA, ulaB, ulaC, ulaD, ulaE, ulaF	nd nd	nd	nd	[AS-NAS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[99], [99]
IHF	repressor	ulaGp	nd	nd	nd	ulaG	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS]	W	[99], [99]
IHF	activator	uspAp1	Sigma70	-81.0	-209.0	uspA	ggttaaccacTATCAATATATTCatgtcgaaaa nd	3639896	3639908	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[100], [100], [101]
IHF	repressor	uspBp	Sigma38	-54.0	-182.0	uspB	ttttcgacatGAATATATTGATAgtggttaacc nd	3639896	3639908	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[100], [100]
IHF	activator	yadVp1	Sigma70	nd	nd	yadV, htrE	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[102]
IHF	activator	yadVp2	Sigma38	nd	nd	yadV, htrE	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[102]
IHF	activator	yadVp3	Sigma70	nd	nd	yadV, htrE	nd nd	nd	nd	[EXP-IEP-GENE-EXPRESSION-ANALYSIS]	W	[102]
IHF	activator	yeiLp	Sigma38	-227.0	-292.0	yeiL	aatgttttatCAAGCGTCTGATTacccgctaca nd	2255057	2255069	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[103]
IHF	activator	yeiLp	Sigma38	-193.0	-258.0	yeiL	tagtgatgccTAATAAATCTATTgccggatgtt nd	2255091	2255103	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS]	W	[103]
IHF	activator	yiaKp1	Sigma70	-49.5	-108.5	yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE	tttatgtcttTTGAAATTCATCAatcagattgc nd	3742618	3742630	[EXP-IEP-GENE-EXPRESSION-ANALYSIS], [COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS], [EXP-IMP-SITE-MUTATION]	C	[79], [79]
IHF	activator	yjbEp1	Sigma70	-133.0	-181.0	yjbE, yjbF, yjbG, yjbH	tgtttttattTTAAGTTTATGATttttattgtt nd	4235719	4235731	[COMP-HINF-SIMILAR-TO-CONSENSUS], [EXP-IDA-BINDING-OF-PURIFIED-PROTEINS]	S	[104], [104]

	Sequence
	agatcttagtTTAACTATTTGTTttataaataa	[-576.0, fimBp2, forward]
	cgaagtttgaTATCAATGGCTTAtcattcgatg	[-326.0, rpoHp6, reverse]
	cgttgaaggtTACCTGCGTGCTTctgaagcatc	[-320.0, ihfBp, forward] [-320.0, ihfBp2, forward]
	atttaatttaTTGATTATAAAGGgctttaattt	[-305.0, carAp1, forward]
	cgtgcttctgAAGCATCCCGTGAccgcgttgaa	[-304.0, ihfBp, forward] [-304.0, ihfBp2, forward]
	tttaaacacaAATCTAATTCCTTgatttaaaat	[-256.0, patAp, forward] [-256.0, patAp2, forward]
	aatgttttatCAAGCGTCTGATTacccgctaca	[-227.0, yeiLp, forward]
	tggtattttaCATGCACTTACAAttgattaaag	[-225.0, acsp, reverse] [-21.0, acsp1, reverse] [-225.0, acsp2, reverse] [-55.0, nrfAp, forward]
	aaaaccgcgcAATCAGCCTGTCTgttcgtgcga	[-207.0, ihfBp, forward] [-207.0, ihfBp2, forward]
	tacaagttgaATTGCAATTTATTGAATttgcacattt	[-202.5, fliAp1, reverse]
	tagtgatgccTAATAAATCTATTgccggatgtt	[-193.0, yeiLp, forward]
	atttattgaaTTTGCACATTTTTGTAGgccggataag	[-186.5, fliAp1, reverse]
	tcaaggttaaAATCAATAACTTAttcttaagta	[-72.0, micFp1, forward] [-72.0, micFp2, forward] [-182.0, ompCp1, reverse] [-125.0, ompCp3, reverse]
	tcagtatcttCCTCTTTTTCAACagcatgcata	[-180.0, acsp, reverse] [-180.0, acsp2, reverse]
	gacaaatcttTAATTTATAGATTtcatgaatat	[-177.0, ssuEp, reverse]
	aatataaggaAATCATATAAATAgattaaaatt	[-176.0, ompFp, reverse] [-176.0, ompFp2, reverse]
	aaatatttttTATATGCATTATTAGTAAGTTATCACCATTTgtatgatttt	[-173.5, csgDp1, reverse] [-173.5, csgDp3, reverse]
	gcgacacttaACTCATTGATTTTaatattatct	[-169.0, glmYp1, reverse]
	tcgttaagcgATTCAGCACCTTAcctcaggcac	[-159.0, aceBp, forward]
	aaagatgcaaTCGCAACTGTTAAcaaacaggaa	[-157.0, ihfBp, forward] [-157.0, ihfBp2, forward]
	tgattaattcTTTGAGGAACATGcagttatgca	[-153.0, acsp, reverse] [-153.0, acsp2, reverse] [-127.0, nrfAp, forward]
	tacgctaaatAATCACTGTGTTGagtgcacaat	[-152.0, glnHp2, reverse]
	taataaccatTATCTAACAATGAgatacctaat	[-145.0, sufAp, reverse]
	ataaattggcTAATAGATTTATTtttattcagc	[-144.0, nmpCp, reverse]
	actgaacgagTAATTCATTGATTcaacatctaa	[-134.0, ssuEp, reverse]
	tgtttttattTTAAGTTTATGATttttattgtt	[-133.0, yjbEp1, forward]
	ttttacagcaCCGTGAAAAATCTcataattttt	[-130.0, narKp1, forward]
	tgccaactttTAATTTATTGTTAttaaagagat	[-38.5, hycAp, reverse] [-127.5, hypAp, forward]
	aaacgtcttaATTTACAGTCTGTtatgtggtgg	[-125.0, narGp, forward]
	gctaaattcaTTTGTTTTTCATTaggttggtta	[-124.0, cysJp, reverse]
	tcaaacggcgCATCAACGCCTTAtttaaatcct	[-117.0, hipBp, reverse]
	catgaaatatCAGACAATTCCGTgacttaagaa	[-115.0, nirBp, forward]
	gcgatctgtaTAGCAACTGCGGAaaacattaat	[-115.0, paaAp, forward] [-80.0, paaZp, reverse]
	tttctaatatGATGATTTTTATGagtaattatc	[-114.0, dusBp, forward]
	atttttatttGGATAATCAAATAtttactccgt	[-112.5, focAp1, reverse]
	cggtgttcacAAAGTTCCTTAAAttttactttt	[-108.0, ompFp, reverse] [-108.0, ompFp2, reverse]
	attatgttacATCAATTTAACATtgagttaacc	[-107.0, glcDp, reverse]
	cccttaacaaCTTAAGGGTTTTCAAatagatagac	[-104.0, fnrp, reverse]
	ttaacttgttGATATTTAAAGGTatttaattgt	[-103.0, tdcAp, reverse]
	aggggcgtttTCATCTCGTTGATtccctttgtc	[-102.0, ompRp1, reverse]
	tttcatttaaAATCAAAATGTTGattgttaatt	[-99.0, csrBp, reverse]
	tatatctaacTCATTGAATCTTTattagttttg	[-98.5, dpsp, reverse] [-98.5, dpsp2, reverse]
	tcaatttcccTTCCTTATTAGCCgcttacggaa	[-96.5, osmYp, forward] [-96.5, osmYp2, forward]
	ccatttatgtTAAGTAATTGAGTgttttgtgtg	[-92.0, flhDp, reverse]
	tccattttaaTTTCAGTCATTTAataaagaatt	[-89.0, gltBp, forward] [-89.0, gltBp2, forward]
	tatttttaaaAAACAACAATTTAtattgaaatt	[-17.0, ilvLp1, forward] [-89.0, ilvLp2, forward]
	taagaaaattTATACAAATCAGCaatataccca	[-88.0, nirBp, forward]
	ttttaatttcAGTCATTTAATAAagaattttgc	[-85.0, gltBp, forward] [-85.0, gltBp2, forward]
	ctaatgtgaaGAAACTTTTGTTAaagttgacaa	[-83.0, nuoAp2, reverse]
	ggttaaccacTATCAATATATTCatgtcgaaaa	[-81.0, uspAp1, forward] [-54.0, uspBp, reverse]
	taaaggcgagTAATTCTCTGACTcttcgggatt	[-77.0, ihfBp, forward] [-77.0, ihfBp2, forward]
	agaaacttttGTTAAAGTTGACAaaaggttata	[-74.0, nuoAp2, reverse]
	agattccgcgAATGAATAGTTTTactggtatac	[-73.0, gcdp1, reverse] [-24.0, hptp, forward]
	ttcatattgtTATCAACAAGTTAtcaagtattt	[-72.0, aceBp, forward]
	tttaatttttAATCATCTAATTTgacaatcatt	[-70.0, gltAp1, reverse]
	cattttcctgCAAAACCATACCCttacgaaaag	[-68.0, sodAp, forward]
	catttctaaaCTTAATAAAACCTTAAGGTTAACATTTTAATATAACGAGTTACATTTAGTTACATGTTTAAcacttgattt	[-66.5, csgDp1, reverse] [-66.5, csgDp3, reverse]
	ttgttaaagtTGACAAAAGGTTAtagaaaggag	[-66.0, nuoAp2, reverse]
	tcgccagcagAATATAAAATTTTcctcaacatc	[-65.0, folAp, forward]
	taatctttttTAAAACAATGAATtaaaaaatta	[-62.0, rtcBp, reverse]
	ttctttttgaAACCAAATCTTTAtctttgtagc	[-62.0, ompFp, reverse] [-62.0, ompFp2, reverse]
	gctaaaacttTACCCTGTTGTTAcggcaacagg	[-61.0, sodBp, forward]
	ccgctaccgaTAATCAACACGTCacatgaatgt	[-59.5, rpoEp1b, reverse]
	cttttcagcaACAAAACTTGATTaacatcaatt	[-58.0, ndhp, forward]
	cccttcatatTCAATTAGTTAAAtaactaaatc	[-57.0, atoDp, forward]
	taaaacaatgAATTAAAAAATTAagctgcttat	[-52.0, rtcBp, reverse]
	agcaacgtatAATCAGTACGTTAccaaactatt	[-52.0, glmYp1, reverse]
	aggtttgattTAACTTATTGATAataaagttaa	[-52.0, fimAp, forward]
	tttatgtcttTTGAAATTCATCAatcagattgc	[-49.5, yiaKp1, forward]
	aattttatttATAGAGTAAAAACaatcagataa	[-48.0, norVp, forward]
	cccttacgaaAAGTACGGCATTGataatcattt	[-48.0, sodAp, forward]
	tttgccgcatCTCGAAAAATCAAggagttgcaa	[-47.0, glnHp2, reverse]
	gcggatatttTATCCGAATGTAAgaaagttggc	[-47.0, ihfAp4, reverse]
	acatcctatcACAGGATTGAAAGtaggggaaaa	[-44.0, dcuDp2, forward]
	atcagatcttTATAAATCAAAAAgataaaaaat	[-42.5, pspAp, forward]
	ttttgctgttAAATCAATAGATTatttttggca	[-38.5, pspGp, forward]
	atcatatcaaCAGAATCAATAATgtttcgccga	[-37.0, ompRp1, reverse]
	actaaatccaATAATCTCATTCTggcactcccc	[-32.0, atoDp, forward]
	gccgtatcgaAATCAACTAATTCcctaaggccg	[-31.0, ibpBp, reverse]
	taatcattttCAATATCATTTAAttaactataa	[-24.0, sodAp, forward]
	tctctttgatTTTCAAATTATTCgatgtataca	[-22.0, dmsAp2, forward]
	agttggcgtaAATCAGGTAGTTGgcgtaaactt	[-21.0, ihfAp4, reverse]
	ttgcctcagaTTCTCAGTATGTTAGggtagaaaaa	[-18.5, proVp3, forward]
	accaatgcacCATTCATGTTATTctcaatagcg	[-17.0, ndhp, forward]
	ttgcgtattaGATCACTTAATTTgctttacatc	[-12.0, ubiCp, forward]
	ttgtgatctaTATTTAACAAAGTgatgacattt	[-5.0, osmYp, forward] [-5.0, osmYp2, forward]
	aatctgattgATGAATTTCAAAAgacataaaaa	[-4.0, plaRp, reverse]
	ttcgtcctgtAATCAAGCACTAAgggcggctac	[-2.0, ihfBp, forward] [-2.0, ihfBp2, forward]
	ttaactataaTGAACCAACTGCTtacgcggcat	[-1.0, sodAp, forward]
	caggcttatcTAACACGCTGATAaacaagagga	[4.5, osmEp, reverse] [4.5, osmEp2, reverse]
	acttaagctgCTGTTTAATATGCtttgtaacaa	[8.0, ompRp1, reverse]
	agaaagcacaTTCGAAAAAGCGAtaagttatga	[8.0, hemFp1, forward]
	gtagccaacaAACAATGCTTTATgaatcctccc	[16.5, pstSp, reverse] [16.5, pstSp2, reverse]
	catctttttaGAACACGCTGAATaaattgaggt	[17.0, norVp, forward]
	tgtcaactatTGAAATGAAAAGTaaaacaattc	[20.5, amiAp, forward]
	ttcattgctgTAACCTGTTGTTAattaagagct	[26.0, ndhp, forward]
	aacaaaaaaaGAACAATTGGTTAtaaggagaga	[33.0, ssuEp, reverse]
	ttctctcactGAATCAGGCTGTTaatcataaat	[35.0, glpTQp, reverse]
	agagcctcgcCATAAGCCTGATCctgcaagata	[54.0, ihfAp4, reverse]
	aaaaagcatcTAACTGTTTGATAtgtaaattat	[77.0, fimAp, forward]
	aaaggcttagAGATCAAGCCTTAacgaactaag	[210.0, ilvLp1, forward] [138.0, ilvLp2, forward]
	gttcaaatatATCGAACAAGGACTTTcaaaagaaca	[140.0, proVp3, forward]
	ggctatgcggCTTACTATTTGGTtcgtaagaac	[202.0, glpTQp, reverse]
	aggcctacgaAAATTCTGCAATGtattgaattt	[1848.0, dppAp, reverse]

Alignment and PSSM for IHF TFBSs

Aligned TFBS of IHF

	Sequence
	AAATCAATGAGTTA
	TTATCAATAAGTTA
	AAATCAATAACTTA
	GAATCAATGAATTA
	TTATCAACAAGTTA
	ATATCAAACAGTTA
	AAATCAATAGATTA
	GATTCAATGAGTTA
	AAATCAAGGAATTA
	TAATCAGTACGTTA
	ATATCAATGGCTTA
	TATTCAATTAGTTA
	AAAACAATGAATTA
	AAAACAAATAGTTA
	ATAACAATAAATTA
	TAATCAAATATTTA
	GAATCAGGCTGTTA
	TTAACAACAGGTTA
	AAATCATAAACTTA
	TTATCAGCGTGTTA
	AAAACAACAATTTA
	ATATCATTTAATTA
	AAATCAACTAATTC
	AAATCAAAAAGATA
	AAATCAAAATGTTG
	AAATCAGGTAGTTG
	GATTCAGCACCTTA
	AATTCAATAAATTG
	TAATCAAGCACTAA
	ATTTCAGTCATTTA
	AAAACACTCAATTA
	AAATCTATAAATTA
	AGAACAATTGGTTA
	ATATAAATAGATTA
	TAATCAGACGCTTG
	AAATAAATCTATTA
	TTATCAATGCCGTA
	ATATCAGACAATTC
	GTAACAACAGGGTA
	TAATCATCTAATTT
	GAACCAACTGCTTA
	GAATCAACGAGATG
	CAAACAATGCTTTA
	TAATCAACACGTCA
	TTTACAGTCTGTTA
	GTTACATTTAGTTA
	TAATCACTGTGTTG
	TTATTAGTAAGTTA
	CTATCAATATATTC
	GAATTAAAAAATTA
	TATTCAGCGTGTTC
	GAATCAATAATGTT
	CTAACAATGAGATA
	GCATCAACGCCTTA
	TTTACATGCACTTA
	GAGTCAGAGAATTA
	GTTACATCAATTTA
	TAATAAATCTATTG
	TTAACAAAAGTTTC
	AAACCAAATCTTTA
	TTTTCAAATTATTC
	TTATTAGCCGCTTA
	AAACCATACCCTTA
	TTATAAAGGGCTTT
	TTGACAAAAGGTTA
	GAACCAAATAGTAA
	TTCTCAGTATGTTA
	TCATCACTTTGTTA
	AGATCACTTAATTT
	CGAACAAGGACTTT
	CTATCACAGGATTG
	GAATGAATAGTTTT
	GAAGCACGCAGGTA
	AGATCAAGCCTTAA
	ATTTAAGGAACTTT
	TTTTCATTTCAATA
	TTTAAAGGTATTTA
	TAATCAAGTTTTGT
	GAAGCATCCCGTGA
	CATTCATGTTATTC
	CAATCAGCCTGTCT
	GAATGAGATTATTG
	CTTACATTCGGATA
	TGAAAAACAAATGA
	AATTCTGCAATGTA
	TAAAAATCATCATA
	TTTGAAAACCCTTA
	TGAAAAATCTCATA
	GAATATAAAATTTT
	GTTTAATATGCTTT
	GATTGATGAATTTC
	GGATCAGGCTTATG
	TATTTATAGAGTAA
	ATAGCAACTGCGGA
	AAATGTGCAAATTC
	TTAACAGTTGCGAT
	TATACAAATCAGCA
	CGAAAAAGCGATAA
	AATTCTTTGAGGAA
	GAAAAAGAGGAAGA
	GAAAAATCAAGGAG

Position weight matrix (PWM). IHF matrix-quality result

A	33	56	75	27	15	96	55	24	34	49	29	9	8	69
C	9	2	1	4	78	0	6	23	22	13	21	0	3	9
G	24	8	2	4	4	0	23	16	21	20	35	10	5	11
T	35	35	23	66	4	5	17	38	24	19	16	82	85	12

Consensus

;	consensus.strict             	taatCAataagtTa
;	consensus.strict.rc          	TAACTTATTGATTA
;	consensus.IUPAC              	dwatCAryvastTa
;	consensus.IUPAC.rc           	TAASTBRYTGATWH
;	consensus.regexp             	[agt][at]atCA[ag][ct][acg]a[cg]tTa
;	consensus.regexp.rc          	TAA[CG]T[CGT][AG][CT]TGAT[AT][ACT]

PWM logo

Evolutionary conservation of regulatory elements

Note: Evolutionary conservation of regulatory interactions and promoters is limited to gammaproteobacteria.

TF-target gene evolutionary conservation
Promoter-target gene evolutionary conservation

Evidence
[EXP-IEP-GENE-EXPRESSION-ANALYSIS] Gene expression analysis
[EXP-IDA-BINDING-OF-PURIFIED-PROTEINS] Binding of purified proteins
[COMP-AINF-SIMILAR-TO-CONSENSUS] Automated inference based on similarity to consensus sequences
[EXP-IMP-SITE-MUTATION] Site mutation
[COMP-HINF-SIMILAR-TO-CONSENSUS] A person inferred or reviewed a computer inference of sequence function based on similarity to a consensus sequence.
[EXP-IDA-BINDING-OF-CELLULAR-EXTRACTS] Binding of cellular extracts
[COMP-HINF] Inferred by a human based on computational evidence
[EXP-CHIP-PCR-MANUAL] ChIP-PCR evidence used in manual assertion
[COMP] Inferred by computational analysis
[IC] Inferred by curator
[AS-NAS] Non-traceable author statement

Reference(s)
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RegulonDB

DNA binding site length:	13
DNA binding site symmetry:	inverted-repeat